Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31651.t1 | XP_003588480.1 | 95.2 | 207 | 10 | 0 | 1 | 207 | 83 | 289 | 7.90E-89 | 336.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31651.t1 | Q9FNE9 | 73.7 | 209 | 53 | 2 | 1 | 207 | 88 | 296 | 2.0e-64 | 246.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene31651.t1 | G7I3E6 | 95.2 | 207 | 10 | 0 | 1 | 207 | 83 | 289 | 5.7e-89 | 336.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049989 | MS.gene31651 | 0.815423 | 9.31E-52 | -1.69E-46 |
MS.gene051816 | MS.gene31651 | 0.838903 | 2.18E-57 | -1.69E-46 |
MS.gene051896 | MS.gene31651 | 0.818061 | 2.39E-52 | -1.69E-46 |
MS.gene051914 | MS.gene31651 | 0.801807 | 7.56E-49 | -1.69E-46 |
MS.gene051955 | MS.gene31651 | 0.83616 | 1.10E-56 | -1.69E-46 |
MS.gene052308 | MS.gene31651 | 0.84939 | 3.33E-60 | -1.69E-46 |
MS.gene052367 | MS.gene31651 | 0.853306 | 2.61E-61 | -1.69E-46 |
MS.gene053416 | MS.gene31651 | 0.806861 | 6.70E-50 | -1.69E-46 |
MS.gene053417 | MS.gene31651 | 0.806961 | 6.38E-50 | -1.69E-46 |
MS.gene054551 | MS.gene31651 | 0.823779 | 1.15E-53 | -1.69E-46 |
MS.gene054593 | MS.gene31651 | 0.820516 | 6.58E-53 | -1.69E-46 |
MS.gene055308 | MS.gene31651 | 0.850228 | 1.94E-60 | -1.69E-46 |
MS.gene055578 | MS.gene31651 | 0.865593 | 5.28E-65 | -1.69E-46 |
MS.gene055579 | MS.gene31651 | 0.82352 | 1.33E-53 | -1.69E-46 |
MS.gene055957 | MS.gene31651 | 0.830776 | 2.43E-55 | -1.69E-46 |
MS.gene056041 | MS.gene31651 | 0.862922 | 3.59E-64 | -1.69E-46 |
MS.gene05640 | MS.gene31651 | 0.849796 | 2.57E-60 | -1.69E-46 |
MS.gene056528 | MS.gene31651 | 0.80996 | 1.46E-50 | -1.69E-46 |
MS.gene057458 | MS.gene31651 | 0.830563 | 2.74E-55 | -1.69E-46 |
MS.gene058128 | MS.gene31651 | 0.807567 | 4.75E-50 | -1.69E-46 |
MS.gene058853 | MS.gene31651 | 0.834414 | 3.04E-56 | -1.69E-46 |
MS.gene059553 | MS.gene31651 | 0.814859 | 1.24E-51 | -1.69E-46 |
MS.gene059616 | MS.gene31651 | 0.802955 | 4.39E-49 | -1.69E-46 |
MS.gene060473 | MS.gene31651 | 0.848936 | 4.46E-60 | -1.69E-46 |
MS.gene060565 | MS.gene31651 | 0.838721 | 2.43E-57 | -1.69E-46 |
MS.gene06093 | MS.gene31651 | 0.829998 | 3.76E-55 | -1.69E-46 |
MS.gene061099 | MS.gene31651 | 0.850378 | 1.77E-60 | -1.69E-46 |
MS.gene061260 | MS.gene31651 | 0.841002 | 6.19E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 40 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTATATTGCTACGTTTATC+TGG | 0.121333 | 1.1:+11889926 | None:intergenic |
CTTGAAGAAATCAATAATTT+TGG | 0.167292 | 1.1:+11891908 | None:intergenic |
AATATAGCACGTTTCATTAA+TGG | 0.211173 | 1.1:-11889911 | MS.gene31651:CDS |
GCATCCCTTGGCGCCATTCC+AGG | 0.276840 | 1.1:+11891133 | None:intergenic |
CTCCTCTTCAAATCATCATT+TGG | 0.347535 | 1.1:+11891232 | None:intergenic |
GAGAAAGCGGAGTAGTAGTT+TGG | 0.397233 | 1.1:-11891293 | MS.gene31651:CDS |
GTTGTTTATGATCCTGTAGA+AGG | 0.406850 | 1.1:-11890191 | MS.gene31651:CDS |
ACGTTCAAGAACAGGAGAAT+TGG | 0.452094 | 1.1:+11891111 | None:intergenic |
ATTCCTCCACGTTCAAGAAC+AGG | 0.452190 | 1.1:+11891103 | None:intergenic |
AAAGCGGAGTAGTAGTTTGG+TGG | 0.462327 | 1.1:-11891290 | MS.gene31651:CDS |
CGCGTTGACTGCTACTAAAA+CGG | 0.476912 | 1.1:-11891182 | MS.gene31651:CDS |
CTATATTGCTACGTTTATCT+GGG | 0.481139 | 1.1:+11889927 | None:intergenic |
ACAATAATAACAGAATATGT+TGG | 0.490743 | 1.1:-11890046 | MS.gene31651:CDS |
TAACTTGTGCAGAAGTATGA+TGG | 0.493269 | 1.1:-11890240 | MS.gene31651:CDS |
TTCTAATCCTTCACAGTCAC+TGG | 0.505311 | 1.1:-11889957 | MS.gene31651:CDS |
GCATCTAAGATTCTGAATCA+TGG | 0.512650 | 1.1:-11891867 | MS.gene31651:intron |
ATAAGTACTTACCCTTCTAC+AGG | 0.515050 | 1.1:+11890179 | None:intergenic |
ATTAGAACAGATGGCGTCGT+TGG | 0.518768 | 1.1:-11891209 | MS.gene31651:CDS |
ATTCAAAGAAGAAGAGAAAG+CGG | 0.540362 | 1.1:-11891306 | MS.gene31651:CDS |
ACAGGAGAATTGGCATCCCT+TGG | 0.541184 | 1.1:+11891121 | None:intergenic |
TCTTGAACGTGGAGGAATGC+AGG | 0.541405 | 1.1:-11891098 | MS.gene31651:intron |
AAGAATCGGGAATATGATGA+TGG | 0.544853 | 1.1:-11890007 | MS.gene31651:CDS |
AGGAGAATGTCCGCCCCTCA+TGG | 0.545962 | 1.1:-11890213 | MS.gene31651:CDS |
TGCAGAAGTATGATGGAAAG+AGG | 0.546783 | 1.1:-11890233 | MS.gene31651:CDS |
AATGAGCTTACATACATGCC+TGG | 0.552496 | 1.1:-11891151 | MS.gene31651:CDS |
CATGCCTGGAATGGCGCCAA+GGG | 0.555292 | 1.1:-11891137 | MS.gene31651:CDS |
AATTCTCCTGTTCTTGAACG+TGG | 0.561001 | 1.1:-11891109 | MS.gene31651:CDS |
ACATGCCTGGAATGGCGCCA+AGG | 0.581749 | 1.1:-11891138 | MS.gene31651:CDS |
GCTTACATACATGCCTGGAA+TGG | 0.584838 | 1.1:-11891146 | MS.gene31651:CDS |
CAGAATCTTAGATGCATCAA+CGG | 0.589395 | 1.1:+11891875 | None:intergenic |
TGCCAAATGATGATTTGAAG+AGG | 0.592036 | 1.1:-11891234 | MS.gene31651:CDS |
GAAGAGGAGATTAGAACAGA+TGG | 0.593117 | 1.1:-11891218 | MS.gene31651:CDS |
TTGTTTATGATCCTGTAGAA+GGG | 0.614616 | 1.1:-11890190 | MS.gene31651:intron |
TCTGCACAAGTTAAGAGTCT+CGG | 0.617054 | 1.1:+11890250 | None:intergenic |
TCTCCTGTTCTTGAACGTGG+AGG | 0.653986 | 1.1:-11891106 | MS.gene31651:CDS |
GGATCATAAACAACCATGAG+GGG | 0.675550 | 1.1:+11890200 | None:intergenic |
AGGATCATAAACAACCATGA+GGG | 0.678750 | 1.1:+11890199 | None:intergenic |
TCATAAACAACCATGAGGGG+CGG | 0.687468 | 1.1:+11890203 | None:intergenic |
CAGGATCATAAACAACCATG+AGG | 0.703912 | 1.1:+11890198 | None:intergenic |
CAGATGACCAGTGACTGTGA+AGG | 0.718767 | 1.1:+11889950 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAATTTTCTTTTTTTTGT+AGG | - | chr1.1:11891714-11891733 | MS.gene31651:intron | 10.0% |
!! | AAAAAAGAAAATTAAAAGTC+AGG | + | chr1.1:11891710-11891729 | None:intergenic | 15.0% |
!!! | TATTATTGTCAAATCTTTTA+TGG | + | chr1.1:11891762-11891781 | None:intergenic | 15.0% |
!! | ACAATAATAACAGAATATGT+TGG | - | chr1.1:11891773-11891792 | MS.gene31651:intron | 20.0% |
!! | TAATGTTTAGAGAATTTGAT+TGG | - | chr1.1:11890014-11890033 | MS.gene31651:CDS | 20.0% |
!! | TTAATTGAAAAATTCTACTG+TGG | - | chr1.1:11890874-11890893 | MS.gene31651:intron | 20.0% |
!!! | CTTGAAGAAATCAATAATTT+TGG | + | chr1.1:11889914-11889933 | None:intergenic | 20.0% |
!!! | GTTTGTATATATTTTTTCTC+AGG | - | chr1.1:11891528-11891547 | MS.gene31651:intron | 20.0% |
!!! | TTAGGTATTATATTGTTGTT+AGG | - | chr1.1:11890773-11890792 | MS.gene31651:intron | 20.0% |
! | AAAAAAGAAAAGGAAGTTGT+TGG | - | chr1.1:11890556-11890575 | MS.gene31651:intron | 25.0% |
! | AATATAGCACGTTTCATTAA+TGG | - | chr1.1:11891908-11891927 | MS.gene31651:CDS | 25.0% |
!! | ATAACTTTTGTAAGACTGTT+TGG | + | chr1.1:11890407-11890426 | None:intergenic | 25.0% |
!!! | ATAATTTTGGTTTGTACAAG+AGG | + | chr1.1:11889901-11889920 | None:intergenic | 25.0% |
!!! | ATGTAGACTTTTTGAAGAAT+CGG | - | chr1.1:11891798-11891817 | MS.gene31651:intron | 25.0% |
!!! | CTTAATTGAGTTTGTTAGTT+AGG | - | chr1.1:11890755-11890774 | MS.gene31651:intron | 25.0% |
ATTCAAAGAAGAAGAGAAAG+CGG | - | chr1.1:11890513-11890532 | MS.gene31651:intron | 30.0% | |
CTATATTGCTACGTTTATCT+GGG | + | chr1.1:11891895-11891914 | None:intergenic | 30.0% | |
GTTTAGAGAATTTGATTGGA+TGG | - | chr1.1:11890018-11890037 | MS.gene31651:CDS | 30.0% | |
TGAGACATTGAATTGATTGT+TGG | - | chr1.1:11891000-11891019 | MS.gene31651:intron | 30.0% | |
TGCAATACTGAAGTATAAAG+TGG | - | chr1.1:11891355-11891374 | MS.gene31651:intron | 30.0% | |
TGGTGGTTTCAAAAAAGAAA+AGG | - | chr1.1:11890546-11890565 | MS.gene31651:intron | 30.0% | |
TGTTGAGTTATGTTTGTATG+AGG | - | chr1.1:11890846-11890865 | MS.gene31651:intron | 30.0% | |
TTGTTTATGATCCTGTAGAA+GGG | - | chr1.1:11891629-11891648 | MS.gene31651:intron | 30.0% | |
! | ACTTTGTTGCCTTTATTTCT+AGG | + | chr1.1:11891334-11891353 | None:intergenic | 30.0% |
! | TATTGTTGTTAGGATACGTT+TGG | - | chr1.1:11890783-11890802 | MS.gene31651:intron | 30.0% |
! | TCTGTTTTCACAAGCTATTA+TGG | - | chr1.1:11890185-11890204 | MS.gene31651:intron | 30.0% |
! | TTAGGTTGTCAACACTAATT+AGG | - | chr1.1:11891111-11891130 | MS.gene31651:CDS | 30.0% |
!! | AGTTTATACTTTTTGAGAGC+TGG | - | chr1.1:11891169-11891188 | MS.gene31651:CDS | 30.0% |
!! | CTACAAACTAGTTTGGATTT+TGG | - | chr1.1:11891383-11891402 | MS.gene31651:intron | 30.0% |
!! | CTATTTTTCACAACCTATTG+TGG | - | chr1.1:11890256-11890275 | MS.gene31651:CDS | 30.0% |
!! | GAAGTGTGTGTTTTAAATTG+TGG | - | chr1.1:11890483-11890502 | MS.gene31651:intron | 30.0% |
!! | TGTAGACTTTTTGAAGAATC+GGG | - | chr1.1:11891799-11891818 | MS.gene31651:intron | 30.0% |
!! | TTGTTTTGTTGAACTGATAC+TGG | - | chr1.1:11891088-11891107 | MS.gene31651:intron | 30.0% |
!!! | GCTGTTTTTACAAGTTATTG+TGG | - | chr1.1:11890076-11890095 | MS.gene31651:CDS | 30.0% |
AAGAATCGGGAATATGATGA+TGG | - | chr1.1:11891812-11891831 | MS.gene31651:intron | 35.0% | |
AGGATCATAAACAACCATGA+GGG | + | chr1.1:11891623-11891642 | None:intergenic | 35.0% | |
ATAAGTACTTACCCTTCTAC+AGG | + | chr1.1:11891643-11891662 | None:intergenic | 35.0% | |
CAGAATCTTAGATGCATCAA+CGG | + | chr1.1:11889947-11889966 | None:intergenic | 35.0% | |
CTCCTCTTCAAATCATCATT+TGG | + | chr1.1:11890590-11890609 | None:intergenic | 35.0% | |
CTGCACTATTTGTCATGATT+TGG | - | chr1.1:11891410-11891429 | MS.gene31651:intron | 35.0% | |
GACATTGAATTGATTGTTGG+TGG | - | chr1.1:11891003-11891022 | MS.gene31651:intron | 35.0% | |
GAGAATTTGATTGGATGGAT+TGG | - | chr1.1:11890023-11890042 | MS.gene31651:CDS | 35.0% | |
GCAGTGTTACCTAGAAATAA+AGG | - | chr1.1:11891322-11891341 | MS.gene31651:intron | 35.0% | |
GCTATATTGCTACGTTTATC+TGG | + | chr1.1:11891896-11891915 | None:intergenic | 35.0% | |
GCTCTGATAATCTGATTAAG+TGG | + | chr1.1:11891460-11891479 | None:intergenic | 35.0% | |
GTTGTTTATGATCCTGTAGA+AGG | - | chr1.1:11891628-11891647 | MS.gene31651:intron | 35.0% | |
TAATACAAGCGCAATGTCTT+TGG | - | chr1.1:11891222-11891241 | MS.gene31651:CDS | 35.0% | |
TCGTCTTCATTTGTACAACT+AGG | + | chr1.1:11891144-11891163 | None:intergenic | 35.0% | |
TCTCAACTTATGCTCAATGT+AGG | - | chr1.1:11891247-11891266 | MS.gene31651:CDS | 35.0% | |
TGCCAAATGATGATTTGAAG+AGG | - | chr1.1:11890585-11890604 | MS.gene31651:intron | 35.0% | |
! | GCATCTAAGATTCTGAATCA+TGG | - | chr1.1:11889952-11889971 | MS.gene31651:CDS | 35.0% |
! | TAACTTGTGCAGAAGTATGA+TGG | - | chr1.1:11891579-11891598 | MS.gene31651:intron | 35.0% |
! | TAGCTTGTGAAAACAGTTGA+TGG | + | chr1.1:11890312-11890331 | None:intergenic | 35.0% |
! | TGGTTTGTACAAGAGGAAAA+GGG | + | chr1.1:11889894-11889913 | None:intergenic | 35.0% |
! | TTGTTGAACTGATACTGGTT+AGG | - | chr1.1:11891093-11891112 | MS.gene31651:intron | 35.0% |
!! | GCTGTTTTCATAAGCTAATG+TGG | - | chr1.1:11890145-11890164 | MS.gene31651:intron | 35.0% |
!! | TTATACTTTTTGAGAGCTGG+TGG | - | chr1.1:11891172-11891191 | MS.gene31651:CDS | 35.0% |
!! | TTGATTGGATGGATTGGTTT+GGG | - | chr1.1:11890029-11890048 | MS.gene31651:CDS | 35.0% |
!! | TTGGTTTGTACAAGAGGAAA+AGG | + | chr1.1:11889895-11889914 | None:intergenic | 35.0% |
!! | TTTGATTGGATGGATTGGTT+TGG | - | chr1.1:11890028-11890047 | MS.gene31651:CDS | 35.0% |
AATGAGCTTACATACATGCC+TGG | - | chr1.1:11890668-11890687 | MS.gene31651:intron | 40.0% | |
AATTCTCCTGTTCTTGAACG+TGG | - | chr1.1:11890710-11890729 | MS.gene31651:intron | 40.0% | |
ACGTTCAAGAACAGGAGAAT+TGG | + | chr1.1:11890711-11890730 | None:intergenic | 40.0% | |
CAGGATCATAAACAACCATG+AGG | + | chr1.1:11891624-11891643 | None:intergenic | 40.0% | |
GAAGAGGAGATTAGAACAGA+TGG | - | chr1.1:11890601-11890620 | MS.gene31651:intron | 40.0% | |
GGATCATAAACAACCATGAG+GGG | + | chr1.1:11891622-11891641 | None:intergenic | 40.0% | |
GGTCTGTCTACAAACTAGTT+TGG | - | chr1.1:11891376-11891395 | MS.gene31651:intron | 40.0% | |
TCTGCACAAGTTAAGAGTCT+CGG | + | chr1.1:11891572-11891591 | None:intergenic | 40.0% | |
TTCTAATCCTTCACAGTCAC+TGG | - | chr1.1:11891862-11891881 | MS.gene31651:intron | 40.0% | |
TTGCATCTCAATGTGCATGT+TGG | - | chr1.1:11890815-11890834 | MS.gene31651:intron | 40.0% | |
TTTCACATGCTCTCCACAAT+AGG | + | chr1.1:11890272-11890291 | None:intergenic | 40.0% | |
! | CAATGTGCATGTTGGTTGTT+TGG | - | chr1.1:11890823-11890842 | MS.gene31651:intron | 40.0% |
! | TGCAGAAGTATGATGGAAAG+AGG | - | chr1.1:11891586-11891605 | MS.gene31651:intron | 40.0% |
AAAGCGGAGTAGTAGTTTGG+TGG | - | chr1.1:11890529-11890548 | MS.gene31651:intron | 45.0% | |
ATGTTGCCTCTTTGTCGTCA+TGG | - | chr1.1:11890968-11890987 | MS.gene31651:intron | 45.0% | |
ATTAGAACAGATGGCGTCGT+TGG | - | chr1.1:11890610-11890629 | MS.gene31651:intron | 45.0% | |
ATTCCTCCACGTTCAAGAAC+AGG | + | chr1.1:11890719-11890738 | None:intergenic | 45.0% | |
GAGAAAGCGGAGTAGTAGTT+TGG | - | chr1.1:11890526-11890545 | MS.gene31651:intron | 45.0% | |
GCTTACATACATGCCTGGAA+TGG | - | chr1.1:11890673-11890692 | MS.gene31651:intron | 45.0% | |
TCATAAACAACCATGAGGGG+CGG | + | chr1.1:11891619-11891638 | None:intergenic | 45.0% | |
TCTAGGTAACACTGCGTACT+AGG | + | chr1.1:11891317-11891336 | None:intergenic | 45.0% | |
TCTTAGCCATGACGACAAAG+AGG | + | chr1.1:11890977-11890996 | None:intergenic | 45.0% | |
!! | CGCGTTGACTGCTACTAAAA+CGG | - | chr1.1:11890637-11890656 | MS.gene31651:intron | 45.0% |
!! | CGTTTTAGTAGCAGTCAACG+CGG | + | chr1.1:11890639-11890658 | None:intergenic | 45.0% |
ACAGGAGAATTGGCATCCCT+TGG | + | chr1.1:11890701-11890720 | None:intergenic | 50.0% | |
CAGATGACCAGTGACTGTGA+AGG | + | chr1.1:11891872-11891891 | None:intergenic | 50.0% | |
TCTCCTGTTCTTGAACGTGG+AGG | - | chr1.1:11890713-11890732 | MS.gene31651:intron | 50.0% | |
TCTTGAACGTGGAGGAATGC+AGG | - | chr1.1:11890721-11890740 | MS.gene31651:intron | 50.0% | |
ACATGCCTGGAATGGCGCCA+AGG | - | chr1.1:11890681-11890700 | MS.gene31651:intron | 60.0% | |
AGGAGAATGTCCGCCCCTCA+TGG | - | chr1.1:11891606-11891625 | MS.gene31651:intron | 60.0% | |
CATGCCTGGAATGGCGCCAA+GGG | - | chr1.1:11890682-11890701 | MS.gene31651:intron | 60.0% | |
GCATCCCTTGGCGCCATTCC+AGG | + | chr1.1:11890689-11890708 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 11889893 | 11891948 | 11889893 | ID=MS.gene31651 |
chr1.1 | mRNA | 11889893 | 11891948 | 11889893 | ID=MS.gene31651.t1;Parent=MS.gene31651 |
chr1.1 | exon | 11891868 | 11891948 | 11891868 | ID=MS.gene31651.t1.exon1;Parent=MS.gene31651.t1 |
chr1.1 | CDS | 11891868 | 11891948 | 11891868 | ID=cds.MS.gene31651.t1;Parent=MS.gene31651.t1 |
chr1.1 | exon | 11891099 | 11891328 | 11891099 | ID=MS.gene31651.t1.exon2;Parent=MS.gene31651.t1 |
chr1.1 | CDS | 11891099 | 11891328 | 11891099 | ID=cds.MS.gene31651.t1;Parent=MS.gene31651.t1 |
chr1.1 | exon | 11890191 | 11890291 | 11890191 | ID=MS.gene31651.t1.exon3;Parent=MS.gene31651.t1 |
chr1.1 | CDS | 11890191 | 11890291 | 11890191 | ID=cds.MS.gene31651.t1;Parent=MS.gene31651.t1 |
chr1.1 | exon | 11889893 | 11890105 | 11889893 | ID=MS.gene31651.t1.exon4;Parent=MS.gene31651.t1 |
chr1.1 | CDS | 11889893 | 11890105 | 11889893 | ID=cds.MS.gene31651.t1;Parent=MS.gene31651.t1 |
Gene Sequence |
Protein sequence |