Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051896.t1 | XP_013450268.1 | 98.3 | 599 | 10 | 0 | 1 | 599 | 1 | 599 | 0.00E+00 | 1141.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051896.t1 | Q9NYP3 | 23.5 | 396 | 211 | 12 | 220 | 543 | 139 | 514 | 5.1e-12 | 74.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051896.t1 | A0A072U4M0 | 98.3 | 599 | 10 | 0 | 1 | 599 | 1 | 599 | 0.0e+00 | 1141.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051896 | MS.gene054662 | 0.814625 | 1.40E-51 | -1.69E-46 |
| MS.gene051896 | MS.gene055308 | 0.823015 | 1.74E-53 | -1.69E-46 |
| MS.gene051896 | MS.gene055578 | 0.822944 | 1.81E-53 | -1.69E-46 |
| MS.gene051896 | MS.gene056041 | 0.809493 | 1.84E-50 | -1.69E-46 |
| MS.gene051896 | MS.gene05640 | 0.830311 | 3.15E-55 | -1.69E-46 |
| MS.gene051896 | MS.gene05652 | 0.809036 | 2.31E-50 | -1.69E-46 |
| MS.gene051896 | MS.gene057669 | 0.817426 | 3.32E-52 | -1.69E-46 |
| MS.gene051896 | MS.gene058128 | 0.818671 | 1.74E-52 | -1.69E-46 |
| MS.gene051896 | MS.gene058853 | 0.808982 | 2.37E-50 | -1.69E-46 |
| MS.gene051896 | MS.gene059616 | 0.836646 | 8.28E-57 | -1.69E-46 |
| MS.gene051896 | MS.gene06093 | 0.82977 | 4.27E-55 | -1.69E-46 |
| MS.gene051896 | MS.gene063308 | 0.811664 | 6.25E-51 | -1.69E-46 |
| MS.gene051896 | MS.gene064328 | 0.809908 | 1.50E-50 | -1.69E-46 |
| MS.gene051896 | MS.gene066026 | 0.823005 | 1.75E-53 | -1.69E-46 |
| MS.gene051896 | MS.gene068197 | 0.813048 | 3.12E-51 | -1.69E-46 |
| MS.gene051896 | MS.gene07051 | 0.810089 | 1.37E-50 | -1.69E-46 |
| MS.gene051896 | MS.gene070800 | 0.815335 | 9.75E-52 | -1.69E-46 |
| MS.gene051896 | MS.gene071422 | 0.804858 | 1.77E-49 | -1.69E-46 |
| MS.gene051896 | MS.gene072702 | 0.806554 | 7.77E-50 | -1.69E-46 |
| MS.gene051896 | MS.gene073059 | 0.805074 | 1.59E-49 | -1.69E-46 |
| MS.gene051896 | MS.gene07616 | 0.819939 | 8.92E-53 | -1.69E-46 |
| MS.gene051896 | MS.gene09885 | 0.814622 | 1.40E-51 | -1.69E-46 |
| MS.gene051896 | MS.gene20224 | 0.835574 | 1.55E-56 | -1.69E-46 |
| MS.gene051896 | MS.gene21734 | 0.819816 | 9.52E-53 | -1.69E-46 |
| MS.gene051896 | MS.gene21888 | 0.829572 | 4.78E-55 | -1.69E-46 |
| MS.gene051896 | MS.gene22466 | 0.813724 | 2.21E-51 | -1.69E-46 |
| MS.gene051896 | MS.gene22500 | 0.81759 | 3.05E-52 | -1.69E-46 |
| MS.gene051896 | MS.gene23064 | 0.836835 | 7.41E-57 | -1.69E-46 |
| MS.gene051896 | MS.gene23886 | 0.851878 | 6.66E-61 | -1.69E-46 |
| MS.gene051896 | MS.gene24758 | 0.826597 | 2.49E-54 | -1.69E-46 |
| MS.gene051896 | MS.gene25797 | 0.802673 | 5.02E-49 | -1.69E-46 |
| MS.gene051896 | MS.gene26406 | 0.828772 | 7.47E-55 | -1.69E-46 |
| MS.gene051896 | MS.gene27811 | 0.813387 | 2.63E-51 | -1.69E-46 |
| MS.gene051896 | MS.gene27812 | 0.813854 | 2.07E-51 | -1.69E-46 |
| MS.gene051896 | MS.gene28807 | 0.820983 | 5.14E-53 | -1.69E-46 |
| MS.gene051896 | MS.gene28923 | 0.816439 | 5.53E-52 | -1.69E-46 |
| MS.gene051896 | MS.gene31651 | 0.818061 | 2.39E-52 | -1.69E-46 |
| MS.gene051896 | MS.gene31653 | 0.802002 | 6.90E-49 | -1.69E-46 |
| MS.gene051896 | MS.gene32740 | 0.811723 | 6.07E-51 | -1.69E-46 |
| MS.gene051896 | MS.gene34503 | 0.824789 | 6.67E-54 | -1.69E-46 |
| MS.gene051896 | MS.gene34573 | 0.829309 | 5.53E-55 | -1.69E-46 |
| MS.gene051896 | MS.gene35150 | 0.812495 | 4.12E-51 | -1.69E-46 |
| MS.gene051896 | MS.gene36273 | 0.815933 | 7.17E-52 | -1.69E-46 |
| MS.gene051896 | MS.gene40241 | 0.813941 | 1.98E-51 | -1.69E-46 |
| MS.gene051896 | MS.gene40405 | 0.804602 | 2.00E-49 | -1.69E-46 |
| MS.gene051896 | MS.gene40689 | 0.801689 | 8.00E-49 | -1.69E-46 |
| MS.gene051896 | MS.gene42663 | 0.818815 | 1.61E-52 | -1.69E-46 |
| MS.gene051896 | MS.gene44100 | 0.804446 | 2.15E-49 | -1.69E-46 |
| MS.gene051896 | MS.gene44251 | 0.815093 | 1.10E-51 | -1.69E-46 |
| MS.gene051896 | MS.gene50484 | 0.801456 | 8.93E-49 | -1.69E-46 |
| MS.gene051896 | MS.gene51554 | 0.816897 | 4.36E-52 | -1.69E-46 |
| MS.gene051896 | MS.gene52113 | 0.818895 | 1.54E-52 | -1.69E-46 |
| MS.gene051896 | MS.gene52403 | 0.846191 | 2.54E-59 | -1.69E-46 |
| MS.gene051896 | MS.gene52980 | 0.830752 | 2.46E-55 | -1.69E-46 |
| MS.gene051896 | MS.gene53188 | 0.817779 | 2.76E-52 | -1.69E-46 |
| MS.gene051896 | MS.gene53408 | 0.813939 | 1.99E-51 | -1.69E-46 |
| MS.gene051896 | MS.gene54040 | 0.824796 | 6.65E-54 | -1.69E-46 |
| MS.gene051896 | MS.gene55817 | 0.802423 | 5.65E-49 | -1.69E-46 |
| MS.gene051896 | MS.gene57751 | 0.826515 | 2.60E-54 | -1.69E-46 |
| MS.gene051896 | MS.gene58234 | 0.822273 | 2.59E-53 | -1.69E-46 |
| MS.gene051896 | MS.gene58754 | 0.816665 | 4.92E-52 | -1.69E-46 |
| MS.gene051896 | MS.gene58835 | 0.826187 | 3.11E-54 | -1.69E-46 |
| MS.gene051896 | MS.gene60269 | 0.852182 | 5.46E-61 | -1.69E-46 |
| MS.gene051896 | MS.gene61618 | 0.805841 | 1.10E-49 | -1.69E-46 |
| MS.gene051896 | MS.gene61684 | 0.817338 | 3.47E-52 | -1.69E-46 |
| MS.gene051896 | MS.gene63469 | 0.83568 | 1.46E-56 | -1.69E-46 |
| MS.gene051896 | MS.gene65301 | 0.831059 | 2.07E-55 | -1.69E-46 |
| MS.gene051896 | MS.gene67555 | 0.823505 | 1.34E-53 | -1.69E-46 |
| MS.gene051896 | MS.gene70263 | 0.809132 | 2.20E-50 | -1.69E-46 |
| MS.gene051896 | MS.gene71431 | 0.813875 | 2.05E-51 | -1.69E-46 |
| MS.gene051896 | MS.gene75642 | 0.837655 | 4.57E-57 | -1.69E-46 |
| MS.gene051896 | MS.gene75915 | 0.805363 | 1.38E-49 | -1.69E-46 |
| MS.gene051896 | MS.gene77563 | 0.848818 | 4.81E-60 | -1.69E-46 |
| MS.gene051896 | MS.gene79921 | 0.850429 | 1.71E-60 | -1.69E-46 |
| MS.gene051896 | MS.gene89653 | 0.84518 | 4.77E-59 | -1.69E-46 |
| MS.gene051896 | MS.gene90302 | 0.816321 | 5.87E-52 | -1.69E-46 |
| MS.gene051896 | MS.gene90876 | 0.801015 | 1.10E-48 | -1.69E-46 |
| MS.gene051896 | MS.gene93762 | 0.809793 | 1.59E-50 | -1.69E-46 |
| MS.gene051896 | MS.gene99337 | 0.805669 | 1.19E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051896.t1 | MTR_7g106900 | 98.331 | 599 | 10 | 0 | 1 | 599 | 1 | 599 | 0.0 | 1205 |
| MS.gene051896.t1 | MTR_7g029625 | 57.971 | 621 | 105 | 24 | 1 | 599 | 1 | 487 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051896.t1 | AT3G54750 | 43.648 | 614 | 279 | 9 | 23 | 598 | 5 | 589 | 5.33e-161 | 473 |
| MS.gene051896.t1 | AT3G54750 | 43.485 | 614 | 279 | 9 | 23 | 598 | 5 | 588 | 1.79e-160 | 472 |
| MS.gene051896.t1 | AT3G54750 | 43.485 | 614 | 279 | 9 | 23 | 598 | 5 | 588 | 1.79e-160 | 472 |
| MS.gene051896.t1 | AT3G54750 | 43.577 | 615 | 278 | 10 | 23 | 598 | 5 | 589 | 7.78e-159 | 468 |
| MS.gene051896.t1 | AT3G54750 | 43.577 | 615 | 278 | 10 | 23 | 598 | 5 | 589 | 7.78e-159 | 468 |
Find 145 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAGAAACCAGGATTATTT+AGG | 0.170968 | 7.1:-6199231 | MS.gene051896:CDS |
| TTTATGTAGCATTGAAATTA+AGG | 0.194384 | 7.1:-6192247 | MS.gene051896:CDS |
| TCAGCTGTTGATAGATCTTC+TGG | 0.224294 | 7.1:-6198733 | MS.gene051896:CDS |
| CGGCTAATAATGGGTCTATT+TGG | 0.239647 | 7.1:-6192308 | MS.gene051896:CDS |
| CTGAAAACCAGCAATGATTC+TGG | 0.249867 | 7.1:+6192864 | None:intergenic |
| TTGACCTATTACTGAATTAC+AGG | 0.250085 | 7.1:-6192815 | MS.gene051896:intron |
| GAAGATATTGCGGCTAATAA+TGG | 0.271803 | 7.1:-6192318 | MS.gene051896:CDS |
| ATTCGAAACGGTGTTTCTAT+TGG | 0.298594 | 7.1:-6199583 | MS.gene051896:CDS |
| CTTACCTGTAATTCAGTAAT+AGG | 0.301616 | 7.1:+6192811 | None:intergenic |
| GCAAGTTACAACTGAGGATT+TGG | 0.306169 | 7.1:-6193608 | MS.gene051896:CDS |
| GTTTCGAATTCGGTGAGAAC+TGG | 0.310383 | 7.1:+6199597 | None:intergenic |
| AAATAGAATTGGAGTTCTTA+AGG | 0.314290 | 7.1:-6196559 | MS.gene051896:intron |
| TAGAAACACCGTTTCGAATT+CGG | 0.316399 | 7.1:+6199587 | None:intergenic |
| ATAAGCATTGCATGAACATT+TGG | 0.321160 | 7.1:+6194891 | None:intergenic |
| TAAGAAACCAGGATTATTTA+GGG | 0.327895 | 7.1:-6199230 | MS.gene051896:CDS |
| CAGTGAACATCACAATAAAC+TGG | 0.329835 | 7.1:+6194935 | None:intergenic |
| ACCTGGCAAGAAGGCTCCTT+TGG | 0.335017 | 7.1:-6198459 | MS.gene051896:CDS |
| TTACTAGTTTGCTCCATAGA+TGG | 0.340079 | 7.1:+6199003 | None:intergenic |
| CGAGGCTGCAGTAATTCCTT+TGG | 0.362313 | 7.1:-6191276 | MS.gene051896:CDS |
| TACCAAGGATGGTGTGTTGC+AGG | 0.368424 | 7.1:-6198815 | MS.gene051896:CDS |
| CTTGGACCGCGTGGTGATAA+TGG | 0.369016 | 7.1:-6198560 | MS.gene051896:CDS |
| GAAGACGTAACTGCAGCTTC+TGG | 0.379959 | 7.1:+6191249 | None:intergenic |
| AGCCCATCAATGCACATATA+CGG | 0.387724 | 7.1:+6192196 | None:intergenic |
| CAGCCGTATATGTGCATTGA+TGG | 0.392186 | 7.1:-6192199 | MS.gene051896:CDS |
| AAGATATTGCGGCTAATAAT+GGG | 0.398168 | 7.1:-6192317 | MS.gene051896:CDS |
| TATCCCCTGCTTCTGCGAAT+TGG | 0.398491 | 7.1:-6198406 | MS.gene051896:intron |
| AGGGGATACTATTCGCATAC+TGG | 0.405603 | 7.1:+6198421 | None:intergenic |
| TAAGGAAACGGCAAGTGGCT+TGG | 0.428810 | 7.1:-6196541 | MS.gene051896:CDS |
| CAGTTTATTGTGATGTTCAC+TGG | 0.431777 | 7.1:-6194934 | MS.gene051896:CDS |
| CCCGATGGAATCTTAAACCT+CGG | 0.436019 | 7.1:+6199157 | None:intergenic |
| CGCCTGCAACACACCATCCT+TGG | 0.438483 | 7.1:+6198813 | None:intergenic |
| AGAAGGCGGAAGAACAGATT+GGG | 0.438610 | 7.1:+6196713 | None:intergenic |
| TAATAGCCCAGAATCATTGC+TGG | 0.440353 | 7.1:-6192871 | MS.gene051896:CDS |
| TTTGCACAAGGATCATTAGA+TGG | 0.442251 | 7.1:-6192273 | MS.gene051896:CDS |
| GCAGAACTTTGGAACGGAAC+AGG | 0.445768 | 7.1:+6192630 | None:intergenic |
| AAGGAAACGGCAAGTGGCTT+GGG | 0.452290 | 7.1:-6196540 | MS.gene051896:CDS |
| GTGTCTCTGAGGTGGACAAT+AGG | 0.452787 | 7.1:-6199255 | MS.gene051896:CDS |
| AATGCAAAACTTTGAAGCCC+TGG | 0.454841 | 7.1:+6196748 | None:intergenic |
| AACTAACTTTGCTGAACCAC+TGG | 0.455460 | 7.1:+6199354 | None:intergenic |
| ACTTACCAATTCGCAGAAGC+AGG | 0.456314 | 7.1:+6198401 | None:intergenic |
| GCCTCTTTGCCGTTCAAAAG+AGG | 0.462275 | 7.1:-6193632 | MS.gene051896:CDS |
| TGAAAATATGAGAAGTTCCC+AGG | 0.465432 | 7.1:-6196766 | MS.gene051896:CDS |
| AGAGACAGCAAGGGGTTTCA+CGG | 0.466552 | 7.1:-6198942 | MS.gene051896:intron |
| ATGACCTCTATTACATGCTT+CGG | 0.466766 | 7.1:-6196505 | MS.gene051896:CDS |
| CCGAGGTTTAAGATTCCATC+GGG | 0.467403 | 7.1:-6199157 | MS.gene051896:CDS |
| TTCACTGGTGGCGATGGCTC+TGG | 0.470881 | 7.1:-6194919 | MS.gene051896:CDS |
| CAATGCAGACCCGGCGCTCA+AGG | 0.471035 | 7.1:-6192911 | MS.gene051896:intron |
| AATTGGAGTTCTTAAGGAAA+CGG | 0.472450 | 7.1:-6196553 | MS.gene051896:CDS |
| AGAGATAGAGAAGCAAAACT+TGG | 0.474814 | 7.1:-6193575 | MS.gene051896:CDS |
| CTCAACACTGATATGATAGA+AGG | 0.475132 | 7.1:+6196696 | None:intergenic |
| TGAAAACCAGCAATGATTCT+GGG | 0.481029 | 7.1:+6192865 | None:intergenic |
| TCCAAAGGAGCCTTCTTGCC+AGG | 0.481682 | 7.1:+6198458 | None:intergenic |
| GATAAGTCAGAGCAGAACTT+TGG | 0.481909 | 7.1:+6192619 | None:intergenic |
| CTCTGAAGGGAGGAGCTTTG+AGG | 0.485787 | 7.1:-6192175 | MS.gene051896:CDS |
| TAGAAGGCGGAAGAACAGAT+TGG | 0.489932 | 7.1:+6196712 | None:intergenic |
| AGAGAATGACCTTGAGCGCC+GGG | 0.492279 | 7.1:+6192902 | None:intergenic |
| AGTCGTGTATCATTGTATCT+AGG | 0.496935 | 7.1:+6199205 | None:intergenic |
| TTTCGAATTCGGTGAGAACT+GGG | 0.497996 | 7.1:+6199598 | None:intergenic |
| TAACAATGATCTAAAACCTC+TGG | 0.503353 | 7.1:+6194855 | None:intergenic |
| TCCACGTCCATCGGATGAAT+CGG | 0.504224 | 7.1:+6198529 | None:intergenic |
| TTGGAGAAATCTGCTACCTC+AGG | 0.513340 | 7.1:-6198844 | MS.gene051896:CDS |
| AAATCTGAATCAAAAGCTGC+TGG | 0.516205 | 7.1:-6191312 | MS.gene051896:CDS |
| AGAGGAAGAATTTACTGCAA+TGG | 0.517278 | 7.1:+6198493 | None:intergenic |
| TTGAGAGGACTAGCCTCGCT+TGG | 0.519123 | 7.1:-6198578 | MS.gene051896:CDS |
| TGCTGAATCTCCACGTCCAT+CGG | 0.520790 | 7.1:+6198520 | None:intergenic |
| CAAAGCAACATTCAGTCCAC+TGG | 0.521488 | 7.1:+6191350 | None:intergenic |
| CTAGGCGCCCTAAATAATCC+TGG | 0.524786 | 7.1:+6199223 | None:intergenic |
| ATCAACAGCTGAAGAAAGAT+CGG | 0.533488 | 7.1:+6198744 | None:intergenic |
| GAAGAATTTACTGCAATGGT+TGG | 0.533738 | 7.1:+6198497 | None:intergenic |
| GCTGGCAGTGAAAGCTTGCG+AGG | 0.536250 | 7.1:-6191294 | MS.gene051896:CDS |
| AGGATACATTTATTCCACCT+TGG | 0.536590 | 7.1:-6192227 | MS.gene051896:CDS |
| TCTTTCCTAGATTAAATGCA+TGG | 0.539258 | 7.1:-6192355 | MS.gene051896:intron |
| CAGAGAATGACCTTGAGCGC+CGG | 0.540235 | 7.1:+6192901 | None:intergenic |
| GTTTAAGATTCCATCGGGGA+AGG | 0.546998 | 7.1:-6199152 | MS.gene051896:CDS |
| GAGATAGAGAAGCAAAACTT+GGG | 0.551066 | 7.1:-6193574 | MS.gene051896:CDS |
| TCCTCTGAATGTCATATACC+TGG | 0.554170 | 7.1:-6198476 | MS.gene051896:CDS |
| GAACTGGGAGGCATAGCACT+TGG | 0.555818 | 7.1:+6199613 | None:intergenic |
| AGAGAAGCAAAACTTGGGGC+AGG | 0.558039 | 7.1:-6193569 | MS.gene051896:intron |
| GGAACAGGAGAACACAAGAC+AGG | 0.558626 | 7.1:+6192645 | None:intergenic |
| ATGTGTAAATACCATAAAAG+AGG | 0.561034 | 7.1:+6196468 | None:intergenic |
| TATTTGCAGTGTCTCTGAGG+TGG | 0.563464 | 7.1:-6199263 | MS.gene051896:intron |
| GCCGAGGTTTAAGATTCCAT+CGG | 0.568404 | 7.1:-6199158 | MS.gene051896:CDS |
| ATGCAAAACTTTGAAGCCCT+GGG | 0.570699 | 7.1:+6196749 | None:intergenic |
| ACCGATTCATCCGATGGACG+TGG | 0.572736 | 7.1:-6198530 | MS.gene051896:CDS |
| GTGACTGAACCGGTCTCCAG+TGG | 0.576955 | 7.1:-6191366 | MS.gene051896:CDS |
| TGTGCATTGATGGGCTCTGA+AGG | 0.577752 | 7.1:-6192189 | MS.gene051896:CDS |
| TCTTCCGAAGCATGTAATAG+AGG | 0.579226 | 7.1:+6196501 | None:intergenic |
| GTGATGTTCACTGGTGGCGA+TGG | 0.579761 | 7.1:-6194925 | MS.gene051896:CDS |
| TTATATTTGCAGTGTCTCTG+AGG | 0.580757 | 7.1:-6199266 | MS.gene051896:intron |
| ATGTCATATACCTGGCAAGA+AGG | 0.580964 | 7.1:-6198468 | MS.gene051896:CDS |
| TTGAGCTCATCAACTGCAGA+AGG | 0.583441 | 7.1:-6196678 | MS.gene051896:CDS |
| GCCAGGTATATGACATTCAG+AGG | 0.584588 | 7.1:+6198475 | None:intergenic |
| CGTGACCTCACTGTCTAGTG+TGG | 0.586021 | 7.1:-6192673 | MS.gene051896:CDS |
| GACAATAGGTTTAAGAAACC+AGG | 0.586658 | 7.1:-6199241 | MS.gene051896:CDS |
| TCAGGAGAGGTTACCAAGGA+TGG | 0.588304 | 7.1:-6198826 | MS.gene051896:CDS |
| AGTGGCAGCAACAATGTGCA+TGG | 0.589761 | 7.1:-6192843 | MS.gene051896:CDS |
| ACATTCAGTCCACTGGAGAC+CGG | 0.590911 | 7.1:+6191357 | None:intergenic |
| CATGTAATAGAGGTCATGAA+AGG | 0.594277 | 7.1:+6196511 | None:intergenic |
| AAAAGTGTAAAGTACTGTGA+TGG | 0.597080 | 7.1:-6191207 | MS.gene051896:CDS |
| AAGGGAGGAGCTTTGAGGCA+AGG | 0.597578 | 7.1:-6192170 | MS.gene051896:intron |
| AGCCGTATATGTGCATTGAT+GGG | 0.598883 | 7.1:-6192198 | MS.gene051896:CDS |
| ATCACCACGCGGTCCAAGCG+AGG | 0.599331 | 7.1:+6198565 | None:intergenic |
| CAAGGATGGTGTGTTGCAGG+CGG | 0.599736 | 7.1:-6198812 | MS.gene051896:CDS |
| TCGGCGGTTAAGAGACAGCA+AGG | 0.602018 | 7.1:-6198952 | MS.gene051896:CDS |
| CTTACCAATTCGCAGAAGCA+GGG | 0.602342 | 7.1:+6198402 | None:intergenic |
| AAGGATGGTGTGTTGCAGGC+GGG | 0.603714 | 7.1:-6198811 | MS.gene051896:CDS |
| AGTTCTCACCGAATTCGAAA+CGG | 0.607334 | 7.1:-6199595 | MS.gene051896:CDS |
| TGCAGCTTCTGGAATGCCAA+AGG | 0.610616 | 7.1:+6191260 | None:intergenic |
| AAACGTACCCTAAGTTCTGA+AGG | 0.611789 | 7.1:+6199547 | None:intergenic |
| GAGAAGAGCTGAAGATATTG+CGG | 0.612061 | 7.1:-6192328 | MS.gene051896:CDS |
| GAAAATATGAGAAGTTCCCA+GGG | 0.612913 | 7.1:-6196765 | MS.gene051896:CDS |
| TATATTTCTCAGTCAACCAG+AGG | 0.614438 | 7.1:-6194871 | MS.gene051896:CDS |
| ATGCTTCGGAAGAACATATG+TGG | 0.616374 | 7.1:-6196491 | MS.gene051896:CDS |
| CATATACGGCTGATAATCCA+AGG | 0.618143 | 7.1:+6192210 | None:intergenic |
| TTAGCTACCGATTCATCCGA+TGG | 0.624246 | 7.1:-6198536 | MS.gene051896:CDS |
| AAAGATAACGAGTTTGCACA+AGG | 0.627297 | 7.1:-6192285 | MS.gene051896:CDS |
| AGCTCATCAACTGCAGAAGG+AGG | 0.628000 | 7.1:-6196675 | MS.gene051896:intron |
| ATCGGGGAAGGAAAATGTGA+AGG | 0.629437 | 7.1:-6199140 | MS.gene051896:intron |
| ATCCTTGGTAACCTCTCCTG+AGG | 0.635914 | 7.1:+6198828 | None:intergenic |
| GGCGGTTAAGAGACAGCAAG+GGG | 0.636366 | 7.1:-6198950 | MS.gene051896:CDS |
| TTACCAATTCGCAGAAGCAG+GGG | 0.643294 | 7.1:+6198403 | None:intergenic |
| GAAGGCGGAAGAACAGATTG+GGG | 0.643801 | 7.1:+6196714 | None:intergenic |
| ACTGGATTGAGAACATTCAT+CGG | 0.646151 | 7.1:+6199372 | None:intergenic |
| CGGCGGTTAAGAGACAGCAA+GGG | 0.649057 | 7.1:-6198951 | MS.gene051896:CDS |
| AGTGAACATCACAATAAACT+GGG | 0.650061 | 7.1:+6194936 | None:intergenic |
| AACACTGATATGATAGAAGG+CGG | 0.654535 | 7.1:+6196699 | None:intergenic |
| GTCAGAGCAGAACTTTGGAA+CGG | 0.655766 | 7.1:+6192624 | None:intergenic |
| TTTATTGTGATGTTCACTGG+TGG | 0.661733 | 7.1:-6194931 | MS.gene051896:CDS |
| GAAATCTGCTACCTCAGGAG+AGG | 0.663455 | 7.1:-6198839 | MS.gene051896:CDS |
| GTTCTTAAGGAAACGGCAAG+TGG | 0.664215 | 7.1:-6196546 | MS.gene051896:CDS |
| CATTGATGGGCTCTGAAGGG+AGG | 0.664242 | 7.1:-6192185 | MS.gene051896:CDS |
| TGGAGCAGTAAATATTGACA+TGG | 0.669718 | 7.1:-6198713 | MS.gene051896:intron |
| GATGAATGTTCTCAATCCAG+TGG | 0.671105 | 7.1:-6199370 | MS.gene051896:CDS |
| GTGCATTGATGGGCTCTGAA+GGG | 0.672288 | 7.1:-6192188 | MS.gene051896:CDS |
| CTAGCCTCGCTTGGACCGCG+TGG | 0.691482 | 7.1:-6198569 | MS.gene051896:CDS |
| ATTGAAGCGAGAAAGTGTCG+TGG | 0.691528 | 7.1:-6199401 | MS.gene051896:CDS |
| TACCTCAGGAGAGGTTACCA+AGG | 0.699417 | 7.1:-6198830 | MS.gene051896:CDS |
| AGAGGAGCAAGTTACAACTG+AGG | 0.701608 | 7.1:-6193614 | MS.gene051896:CDS |
| AGATAGAGAAGCAAAACTTG+GGG | 0.704121 | 7.1:-6193573 | MS.gene051896:CDS |
| CGAATTCGGTGAGAACTGGG+AGG | 0.706927 | 7.1:+6199601 | None:intergenic |
| ATTGAGAACATTCATCGGTG+AGG | 0.709288 | 7.1:+6199377 | None:intergenic |
| AACGTCCACACTAGACAGTG+AGG | 0.727809 | 7.1:+6192668 | None:intergenic |
| ATACGGCTGATAATCCAAGG+TGG | 0.770014 | 7.1:+6192213 | None:intergenic |
| CGAGGTTTAAGATTCCATCG+GGG | 0.798890 | 7.1:-6199156 | MS.gene051896:CDS |
| GCTAATCCATTATCACCACG+CGG | 0.807615 | 7.1:+6198554 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 6191176 | 6199653 | 6191176 | ID=MS.gene051896 |
| chr7.1 | mRNA | 6191176 | 6199653 | 6191176 | ID=MS.gene051896.t1;Parent=MS.gene051896 |
| chr7.1 | exon | 6199555 | 6199653 | 6199555 | ID=MS.gene051896.t1.exon1;Parent=MS.gene051896.t1 |
| chr7.1 | CDS | 6199555 | 6199653 | 6199555 | ID=cds.MS.gene051896.t1;Parent=MS.gene051896.t1 |
| chr7.1 | exon | 6199361 | 6199431 | 6199361 | ID=MS.gene051896.t1.exon2;Parent=MS.gene051896.t1 |
| chr7.1 | CDS | 6199361 | 6199431 | 6199361 | ID=cds.MS.gene051896.t1;Parent=MS.gene051896.t1 |
| chr7.1 | exon | 6199141 | 6199276 | 6199141 | ID=MS.gene051896.t1.exon3;Parent=MS.gene051896.t1 |
| chr7.1 | CDS | 6199141 | 6199276 | 6199141 | ID=cds.MS.gene051896.t1;Parent=MS.gene051896.t1 |
| chr7.1 | exon | 6198943 | 6199031 | 6198943 | ID=MS.gene051896.t1.exon4;Parent=MS.gene051896.t1 |
| chr7.1 | CDS | 6198943 | 6199031 | 6198943 | ID=cds.MS.gene051896.t1;Parent=MS.gene051896.t1 |
| chr7.1 | exon | 6198714 | 6198867 | 6198714 | ID=MS.gene051896.t1.exon5;Parent=MS.gene051896.t1 |
| chr7.1 | CDS | 6198714 | 6198867 | 6198714 | ID=cds.MS.gene051896.t1;Parent=MS.gene051896.t1 |
| chr7.1 | exon | 6198407 | 6198609 | 6198407 | ID=MS.gene051896.t1.exon6;Parent=MS.gene051896.t1 |
| chr7.1 | CDS | 6198407 | 6198609 | 6198407 | ID=cds.MS.gene051896.t1;Parent=MS.gene051896.t1 |
| chr7.1 | exon | 6196676 | 6196791 | 6196676 | ID=MS.gene051896.t1.exon7;Parent=MS.gene051896.t1 |
| chr7.1 | CDS | 6196676 | 6196791 | 6196676 | ID=cds.MS.gene051896.t1;Parent=MS.gene051896.t1 |
| chr7.1 | exon | 6196480 | 6196575 | 6196480 | ID=MS.gene051896.t1.exon8;Parent=MS.gene051896.t1 |
| chr7.1 | CDS | 6196480 | 6196575 | 6196480 | ID=cds.MS.gene051896.t1;Parent=MS.gene051896.t1 |
| chr7.1 | exon | 6194846 | 6194967 | 6194846 | ID=MS.gene051896.t1.exon9;Parent=MS.gene051896.t1 |
| chr7.1 | CDS | 6194846 | 6194967 | 6194846 | ID=cds.MS.gene051896.t1;Parent=MS.gene051896.t1 |
| chr7.1 | exon | 6193570 | 6193671 | 6193570 | ID=MS.gene051896.t1.exon10;Parent=MS.gene051896.t1 |
| chr7.1 | CDS | 6193570 | 6193671 | 6193570 | ID=cds.MS.gene051896.t1;Parent=MS.gene051896.t1 |
| chr7.1 | exon | 6192816 | 6192925 | 6192816 | ID=MS.gene051896.t1.exon11;Parent=MS.gene051896.t1 |
| chr7.1 | CDS | 6192816 | 6192925 | 6192816 | ID=cds.MS.gene051896.t1;Parent=MS.gene051896.t1 |
| chr7.1 | exon | 6192614 | 6192701 | 6192614 | ID=MS.gene051896.t1.exon12;Parent=MS.gene051896.t1 |
| chr7.1 | CDS | 6192614 | 6192701 | 6192614 | ID=cds.MS.gene051896.t1;Parent=MS.gene051896.t1 |
| chr7.1 | exon | 6192171 | 6192367 | 6192171 | ID=MS.gene051896.t1.exon13;Parent=MS.gene051896.t1 |
| chr7.1 | CDS | 6192171 | 6192367 | 6192171 | ID=cds.MS.gene051896.t1;Parent=MS.gene051896.t1 |
| chr7.1 | exon | 6191176 | 6191392 | 6191176 | ID=MS.gene051896.t1.exon14;Parent=MS.gene051896.t1 |
| chr7.1 | CDS | 6191176 | 6191392 | 6191176 | ID=cds.MS.gene051896.t1;Parent=MS.gene051896.t1 |
| Gene Sequence |
| Protein sequence |
