Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32467.t1 | XP_003616526.1 | 96.9 | 413 | 11 | 1 | 1 | 411 | 1 | 413 | 3.10E-230 | 807.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32467.t1 | Q9LZN0 | 69.3 | 352 | 100 | 3 | 63 | 411 | 52 | 398 | 2.9e-144 | 513.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32467.t1 | F6LPU5 | 96.9 | 413 | 11 | 1 | 1 | 411 | 1 | 413 | 2.3e-230 | 807.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene32467 | 0.825697 | 4.07E-54 | -1.69E-46 |
| MS.gene050297 | MS.gene32467 | 0.808772 | 2.63E-50 | -1.69E-46 |
| MS.gene051816 | MS.gene32467 | 0.809794 | 1.59E-50 | -1.69E-46 |
| MS.gene051955 | MS.gene32467 | 0.836607 | 8.47E-57 | -1.69E-46 |
| MS.gene052308 | MS.gene32467 | 0.822733 | 2.02E-53 | -1.69E-46 |
| MS.gene052367 | MS.gene32467 | 0.825605 | 4.28E-54 | -1.69E-46 |
| MS.gene053173 | MS.gene32467 | 0.802538 | 5.35E-49 | -1.69E-46 |
| MS.gene053348 | MS.gene32467 | 0.819554 | 1.09E-52 | -1.69E-46 |
| MS.gene053416 | MS.gene32467 | 0.808093 | 3.67E-50 | -1.69E-46 |
| MS.gene053417 | MS.gene32467 | 0.806895 | 6.59E-50 | -1.69E-46 |
| MS.gene05369 | MS.gene32467 | 0.803362 | 3.62E-49 | -1.69E-46 |
| MS.gene054551 | MS.gene32467 | 0.805219 | 1.48E-49 | -1.69E-46 |
| MS.gene054552 | MS.gene32467 | 0.807119 | 5.91E-50 | -1.69E-46 |
| MS.gene054593 | MS.gene32467 | 0.825144 | 5.50E-54 | -1.69E-46 |
| MS.gene054885 | MS.gene32467 | 0.800977 | 1.12E-48 | -1.69E-46 |
| MS.gene055308 | MS.gene32467 | 0.82959 | 4.73E-55 | -1.69E-46 |
| MS.gene055578 | MS.gene32467 | 0.84537 | 4.24E-59 | -1.69E-46 |
| MS.gene055579 | MS.gene32467 | 0.833255 | 5.93E-56 | -1.69E-46 |
| MS.gene055957 | MS.gene32467 | 0.824314 | 8.63E-54 | -1.69E-46 |
| MS.gene056041 | MS.gene32467 | 0.868969 | 4.40E-66 | -1.69E-46 |
| MS.gene056042 | MS.gene32467 | 0.828335 | 9.52E-55 | -1.69E-46 |
| MS.gene05640 | MS.gene32467 | 0.823272 | 1.51E-53 | -1.69E-46 |
| MS.gene056526 | MS.gene32467 | 0.822426 | 2.38E-53 | -1.69E-46 |
| MS.gene056528 | MS.gene32467 | 0.81785 | 2.66E-52 | -1.69E-46 |
| MS.gene057458 | MS.gene32467 | 0.821715 | 3.48E-53 | -1.69E-46 |
| MS.gene058128 | MS.gene32467 | 0.818634 | 1.77E-52 | -1.69E-46 |
| MS.gene058196 | MS.gene32467 | 0.810585 | 1.07E-50 | -1.69E-46 |
| MS.gene058853 | MS.gene32467 | 0.843454 | 1.39E-58 | -1.69E-46 |
| MS.gene059553 | MS.gene32467 | 0.830255 | 3.26E-55 | -1.69E-46 |
| MS.gene060473 | MS.gene32467 | 0.878847 | 2.02E-69 | -1.69E-46 |
| MS.gene060565 | MS.gene32467 | 0.878864 | 1.99E-69 | -1.69E-46 |
| MS.gene06093 | MS.gene32467 | 0.826705 | 2.34E-54 | -1.69E-46 |
| MS.gene061099 | MS.gene32467 | 0.842374 | 2.69E-58 | -1.69E-46 |
| MS.gene061260 | MS.gene32467 | 0.846898 | 1.63E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32467.t1 | MTR_5g081410 | 96.852 | 413 | 11 | 1 | 1 | 411 | 1 | 413 | 0.0 | 829 |
| MS.gene32467.t1 | MTR_3g069590 | 69.794 | 437 | 100 | 6 | 1 | 411 | 1 | 431 | 0.0 | 595 |
| MS.gene32467.t1 | MTR_3g069590 | 69.794 | 437 | 100 | 6 | 1 | 411 | 1 | 431 | 0.0 | 592 |
| MS.gene32467.t1 | MTR_7g065220 | 64.499 | 369 | 130 | 1 | 44 | 411 | 148 | 516 | 7.64e-176 | 506 |
| MS.gene32467.t1 | MTR_4g019770 | 61.765 | 374 | 135 | 2 | 42 | 411 | 54 | 423 | 1.39e-164 | 473 |
| MS.gene32467.t1 | MTR_4g075640 | 59.697 | 330 | 131 | 1 | 82 | 411 | 89 | 416 | 1.59e-139 | 410 |
| MS.gene32467.t1 | MTR_8g030850 | 54.810 | 343 | 134 | 4 | 82 | 411 | 99 | 433 | 3.10e-122 | 363 |
| MS.gene32467.t1 | MTR_7g077690 | 50.000 | 386 | 129 | 4 | 82 | 411 | 115 | 492 | 1.10e-114 | 345 |
| MS.gene32467.t1 | MTR_6g087700 | 48.943 | 331 | 149 | 4 | 82 | 411 | 98 | 409 | 8.50e-108 | 328 |
| MS.gene32467.t1 | MTR_2g101830 | 47.432 | 331 | 155 | 4 | 82 | 411 | 88 | 400 | 2.99e-105 | 321 |
| MS.gene32467.t1 | MTR_5g025960 | 45.152 | 330 | 171 | 2 | 82 | 411 | 120 | 439 | 2.11e-93 | 291 |
| MS.gene32467.t1 | MTR_4g013165 | 45.552 | 281 | 132 | 4 | 131 | 410 | 1 | 261 | 2.57e-82 | 258 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32467.t1 | AT5G02010 | 69.318 | 352 | 100 | 3 | 63 | 411 | 52 | 398 | 0.0 | 523 |
| MS.gene32467.t1 | AT5G05940 | 65.147 | 373 | 127 | 2 | 42 | 411 | 63 | 435 | 2.94e-177 | 503 |
| MS.gene32467.t1 | AT5G05940 | 65.147 | 373 | 127 | 2 | 42 | 411 | 63 | 435 | 1.03e-175 | 504 |
| MS.gene32467.t1 | AT3G55660 | 59.249 | 373 | 143 | 3 | 42 | 411 | 71 | 437 | 4.23e-154 | 442 |
| MS.gene32467.t1 | AT3G55660 | 59.249 | 373 | 143 | 3 | 42 | 411 | 71 | 437 | 8.96e-153 | 444 |
| MS.gene32467.t1 | AT4G38430 | 57.637 | 347 | 139 | 4 | 67 | 411 | 80 | 420 | 1.39e-137 | 405 |
| MS.gene32467.t1 | AT4G00460 | 55.786 | 337 | 134 | 5 | 82 | 411 | 106 | 434 | 6.17e-124 | 367 |
| MS.gene32467.t1 | AT4G00460 | 55.786 | 337 | 134 | 5 | 82 | 411 | 106 | 434 | 6.17e-124 | 367 |
| MS.gene32467.t1 | AT1G01700 | 55.786 | 337 | 134 | 5 | 82 | 411 | 118 | 446 | 9.86e-122 | 362 |
| MS.gene32467.t1 | AT1G01700 | 54.651 | 344 | 134 | 6 | 82 | 411 | 118 | 453 | 1.51e-119 | 355 |
| MS.gene32467.t1 | AT1G01700 | 51.226 | 367 | 134 | 6 | 82 | 411 | 118 | 476 | 2.95e-115 | 346 |
| MS.gene32467.t1 | AT3G24620 | 51.057 | 331 | 142 | 4 | 82 | 411 | 87 | 398 | 7.47e-115 | 345 |
| MS.gene32467.t1 | AT2G45890 | 51.176 | 340 | 145 | 6 | 82 | 411 | 95 | 423 | 3.20e-110 | 332 |
| MS.gene32467.t1 | AT4G13240 | 48.640 | 331 | 150 | 4 | 82 | 411 | 76 | 387 | 3.59e-109 | 331 |
| MS.gene32467.t1 | AT1G79860 | 47.734 | 331 | 152 | 5 | 82 | 411 | 94 | 404 | 2.69e-105 | 321 |
| MS.gene32467.t1 | AT1G52240 | 49.547 | 331 | 144 | 5 | 82 | 411 | 106 | 414 | 1.45e-104 | 320 |
| MS.gene32467.t1 | AT3G16130 | 48.225 | 338 | 157 | 5 | 75 | 411 | 85 | 405 | 2.39e-102 | 314 |
| MS.gene32467.t1 | AT4G00460 | 51.987 | 302 | 130 | 5 | 117 | 411 | 8 | 301 | 3.52e-102 | 307 |
| MS.gene32467.t1 | AT5G19560 | 45.921 | 331 | 161 | 4 | 82 | 411 | 65 | 378 | 4.48e-100 | 303 |
| MS.gene32467.t1 | AT5G19560 | 45.921 | 331 | 161 | 4 | 82 | 411 | 46 | 359 | 4.52e-99 | 304 |
| MS.gene32467.t1 | AT5G19560 | 45.921 | 331 | 161 | 4 | 82 | 411 | 46 | 359 | 4.52e-99 | 304 |
| MS.gene32467.t1 | AT5G19560 | 45.921 | 331 | 161 | 4 | 82 | 411 | 65 | 378 | 8.20e-99 | 304 |
| MS.gene32467.t1 | AT1G31650 | 41.791 | 335 | 176 | 3 | 82 | 411 | 110 | 430 | 9.30e-86 | 271 |
| MS.gene32467.t1 | AT1G31650 | 41.791 | 335 | 176 | 3 | 82 | 411 | 138 | 458 | 3.62e-85 | 271 |
| MS.gene32467.t1 | AT4G00460 | 58.333 | 228 | 90 | 3 | 82 | 306 | 106 | 331 | 7.17e-84 | 260 |
| MS.gene32467.t1 | AT1G01700 | 60.280 | 214 | 82 | 2 | 82 | 292 | 118 | 331 | 1.18e-81 | 255 |
| MS.gene32467.t1 | AT1G01700 | 60.280 | 214 | 82 | 2 | 82 | 292 | 118 | 331 | 1.18e-81 | 255 |
| MS.gene32467.t1 | AT5G19560 | 42.149 | 242 | 122 | 4 | 171 | 411 | 5 | 229 | 4.05e-61 | 202 |
Find 84 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGGCTGCTTTCAGTATT+TGG | 0.134248 | 5.3:-66007233 | None:intergenic |
| GGAAGTTCCCGAGTCGTATT+TGG | 0.241485 | 5.3:+66007284 | MS.gene32467:CDS |
| GGTCTTCTTCATTTCCTATT+AGG | 0.245693 | 5.3:+66005680 | MS.gene32467:CDS |
| CAACATGTAGGAACTGTATT+TGG | 0.265120 | 5.3:+66006198 | MS.gene32467:intron |
| TTCATCTGATTTGCTACATT+TGG | 0.286431 | 5.3:-66005716 | None:intergenic |
| TTGTTGAGTTAATGCCTTCT+TGG | 0.293497 | 5.3:+66006310 | MS.gene32467:CDS |
| GCAGGAGGCACACGGGGTAC+TGG | 0.311400 | 5.3:-66007156 | None:intergenic |
| GAACTGTATTTGGACAATTA+TGG | 0.318046 | 5.3:+66006208 | MS.gene32467:CDS |
| GTTGCACTGCTATGGAGTTT+TGG | 0.323799 | 5.3:+66007043 | MS.gene32467:CDS |
| GACATAGTGCCCTTCCTAAT+AGG | 0.352007 | 5.3:-66005694 | None:intergenic |
| TTCATTGAAGCAGCGCTTCC+CGG | 0.357161 | 5.3:+66007795 | MS.gene32467:CDS |
| TTATCATCAACTTGAGAAAC+AGG | 0.378270 | 5.3:-66005751 | None:intergenic |
| AGAAAAGTGGCAGAGAGAAA+TGG | 0.381993 | 5.3:+66006260 | MS.gene32467:CDS |
| CATCTGGTGCCACAATTCCT+TGG | 0.414903 | 5.3:-66007074 | None:intergenic |
| CTGATTTCTCTTGCGAAAAG+AGG | 0.416366 | 5.3:-66007109 | None:intergenic |
| CTCAAGTGCAACATGCTCAT+TGG | 0.420115 | 5.3:-66007599 | None:intergenic |
| GGACATTGTGAAGGACTTCA+TGG | 0.423504 | 5.3:+66007720 | MS.gene32467:CDS |
| CATAAATTGCGGCTTCTAAA+CGG | 0.424426 | 5.3:-66007630 | None:intergenic |
| TAGAAGCCGCAATTTATGTA+TGG | 0.430551 | 5.3:+66007635 | MS.gene32467:CDS |
| GTGAAGGACTTCATGGTTGA+TGG | 0.439958 | 5.3:+66007727 | MS.gene32467:CDS |
| TTTAGATAGTTGCACTGCTA+TGG | 0.442885 | 5.3:+66007035 | MS.gene32467:CDS |
| TCAGAATGGAAGAACGTGCT+TGG | 0.444622 | 5.3:+66007504 | MS.gene32467:intron |
| CAGGAGGCACACGGGGTACT+GGG | 0.446468 | 5.3:-66007155 | None:intergenic |
| TCAGGATATGTTTGCCAAGA+AGG | 0.453625 | 5.3:-66006324 | None:intergenic |
| CAGAATGGAAGAACGTGCTT+GGG | 0.465023 | 5.3:+66007505 | MS.gene32467:intron |
| GAGGCTGATCCATCTGCATC+TGG | 0.467719 | 5.3:-66007090 | None:intergenic |
| AGCATGAAACCTTGTTGCAT+TGG | 0.469347 | 5.3:-66007852 | None:intergenic |
| GCAAGCACTCTTGAGAGAAC+TGG | 0.473659 | 5.3:-66007558 | None:intergenic |
| TCATTGAAGCAGCGCTTCCC+GGG | 0.475313 | 5.3:+66007796 | MS.gene32467:CDS |
| CTGCTTGGTGAAGATATGTC+AGG | 0.475560 | 5.3:+66005988 | MS.gene32467:CDS |
| ATCAGGAGGGGATATGATGA+AGG | 0.476878 | 5.3:+66005948 | MS.gene32467:intron |
| CAGCATTGCTTTAGATGACA+TGG | 0.484744 | 5.3:+66007263 | MS.gene32467:CDS |
| TTCTTCATTTCCTATTAGGA+AGG | 0.485913 | 5.3:+66005684 | MS.gene32467:CDS |
| AATGGGTCTTGTAGTTCCAC+TGG | 0.490578 | 5.3:+66005613 | MS.gene32467:CDS |
| GTTCGACTACAAAGTCATCC+TGG | 0.490964 | 5.3:+66007698 | MS.gene32467:CDS |
| GGTGAAGATATGTCAGGGTC+TGG | 0.491025 | 5.3:+66005994 | MS.gene32467:CDS |
| GTACCCCGTGTGCCTCCTGC+CGG | 0.499229 | 5.3:+66007159 | MS.gene32467:CDS |
| TTGTCGAGTTTACGTAGAGC+TGG | 0.504038 | 5.3:-66006905 | None:intergenic |
| GTATTTGGATACCCTTCCTA+AGG | 0.508742 | 5.3:+66007299 | MS.gene32467:CDS |
| GATATGTCAGGGTCTGGAAA+AGG | 0.513629 | 5.3:+66006000 | MS.gene32467:CDS |
| ACCTCTAGCTTACTACCATC+AGG | 0.519299 | 5.3:-66006342 | None:intergenic |
| TCTTGAGTTCTCACTGAGAC+CGG | 0.521027 | 5.3:-66007178 | None:intergenic |
| ATGTAGTTTGACTTAAACCC+GGG | 0.524605 | 5.3:-66007813 | None:intergenic |
| TGGAAAATCAAACCTTAGGA+AGG | 0.525020 | 5.3:-66007311 | None:intergenic |
| GAGTTCTCACTGAGACCGGC+AGG | 0.534877 | 5.3:-66007174 | None:intergenic |
| ATCAGCGGCAAGAGGAGAAG+TGG | 0.535708 | 5.3:+66007127 | MS.gene32467:CDS |
| ATGGATTGGCTTCTTTGTGT+TGG | 0.544302 | 5.3:+66006279 | MS.gene32467:CDS |
| TCTTCATTTCCTATTAGGAA+GGG | 0.555428 | 5.3:+66005685 | MS.gene32467:CDS |
| ACTTTGTAGTCGAACGGCTA+GGG | 0.555981 | 5.3:-66007690 | None:intergenic |
| GAAGTCCTTCACAATGTCCC+AGG | 0.565686 | 5.3:-66007716 | None:intergenic |
| GACTTTGTAGTCGAACGGCT+AGG | 0.567248 | 5.3:-66007691 | None:intergenic |
| AAAAGGAGTTAGCACTGCAT+TGG | 0.568507 | 5.3:+66006017 | MS.gene32467:CDS |
| AGTGGCAGAGAGAAATGGAT+TGG | 0.572062 | 5.3:+66006265 | MS.gene32467:CDS |
| GGGTTTAAGTCAAACTACAT+TGG | 0.572158 | 5.3:+66007816 | MS.gene32467:CDS |
| GTGGTTTAGAGTGAGATCTC+TGG | 0.574600 | 5.3:-66007660 | None:intergenic |
| TGAGACCGGCAGGAGGCACA+CGG | 0.577679 | 5.3:-66007164 | None:intergenic |
| CATGTGAAAAGAAAGAAAAG+TGG | 0.581474 | 5.3:+66006247 | MS.gene32467:CDS |
| AGGTTTGCGAAGTTACTGCT+TGG | 0.585242 | 5.3:+66005973 | MS.gene32467:CDS |
| TTCGACTACAAAGTCATCCT+GGG | 0.585548 | 5.3:+66007699 | MS.gene32467:CDS |
| GAGACCGGCAGGAGGCACAC+GGG | 0.597490 | 5.3:-66007163 | None:intergenic |
| CAAGAGAAATCAGCGGCAAG+AGG | 0.598859 | 5.3:+66007119 | MS.gene32467:CDS |
| AATGCTATTACTAATTTGTG+TGG | 0.601531 | 5.3:+66006048 | MS.gene32467:CDS |
| GTATGTTGACCAAGGAATTG+TGG | 0.604214 | 5.3:+66007065 | MS.gene32467:CDS |
| GAGGGGATATGATGAAGGAA+AGG | 0.608465 | 5.3:+66005953 | MS.gene32467:CDS |
| AATGTAGTTTGACTTAAACC+CGG | 0.610470 | 5.3:-66007814 | None:intergenic |
| GTCATCCTGGGACATTGTGA+AGG | 0.614434 | 5.3:+66007711 | MS.gene32467:CDS |
| TGCTTGGTGAAGATATGTCA+GGG | 0.618748 | 5.3:+66005989 | MS.gene32467:CDS |
| AGCAATGCTGTTGATAGACA+TGG | 0.626027 | 5.3:-66007250 | None:intergenic |
| TCCTGATGGTAGTAAGCTAG+AGG | 0.628089 | 5.3:+66006341 | MS.gene32467:CDS |
| TCTTGGCAAACATATCCTGA+TGG | 0.629177 | 5.3:+66006327 | MS.gene32467:CDS |
| AGGATGACTTTGTAGTCGAA+CGG | 0.629366 | 5.3:-66007696 | None:intergenic |
| AAGGGTATCCAAATACGACT+CGG | 0.630421 | 5.3:-66007292 | None:intergenic |
| GGAAAATCAAACCTTAGGAA+GGG | 0.632917 | 5.3:-66007310 | None:intergenic |
| TTGCAAGATCCAATGCAACA+AGG | 0.637712 | 5.3:+66007843 | MS.gene32467:CDS |
| ATCTGAGCAACACGATCCAG+TGG | 0.638385 | 5.3:-66005629 | None:intergenic |
| AGGGTATCCAAATACGACTC+GGG | 0.638687 | 5.3:-66007291 | None:intergenic |
| AGACCGGCAGGAGGCACACG+GGG | 0.642385 | 5.3:-66007162 | None:intergenic |
| GTCGAACGGCTAGGGTAGAG+TGG | 0.643760 | 5.3:-66007682 | None:intergenic |
| ATTGTGGCACCAGATGCAGA+TGG | 0.645033 | 5.3:+66007081 | MS.gene32467:CDS |
| AGCGGCAAGAGGAGAAGTGG+TGG | 0.645482 | 5.3:+66007130 | MS.gene32467:CDS |
| TTCTCACTGAGACCGGCAGG+AGG | 0.665518 | 5.3:-66007171 | None:intergenic |
| GCACTCTTGAGAGAACTGGT+CGG | 0.681945 | 5.3:-66007554 | None:intergenic |
| GAACGGCTAGGGTAGAGTGG+TGG | 0.690009 | 5.3:-66007679 | None:intergenic |
| CTGGTGCCATACATAAATTG+CGG | 0.695871 | 5.3:-66007641 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAACAAAGATTAATAAAT+AGG | + | chr5.3:66006412-66006431 | MS.gene32467:intron | 15.0% |
| !!! | AATTTTCAAAAGAGAAAAAA+TGG | + | chr5.3:66005595-66005614 | MS.gene32467:CDS | 15.0% |
| !!! | ATTTTCAAAAGAGAAAAAAT+GGG | + | chr5.3:66005596-66005615 | MS.gene32467:CDS | 15.0% |
| !!! | TTGTAATAAATATTGATAGT+AGG | + | chr5.3:66006082-66006101 | MS.gene32467:intron | 15.0% |
| !! | ACATTAAACTCACATATATA+AGG | - | chr5.3:66006388-66006407 | None:intergenic | 20.0% |
| !! | ATTGTTGATACTATATAATC+TGG | + | chr5.3:66007402-66007421 | MS.gene32467:intron | 20.0% |
| !! | TACAAAGTCAAAACATAATA+AGG | - | chr5.3:66005926-66005945 | None:intergenic | 20.0% |
| !!! | ATTTTTTATTCTTCCAATGT+AGG | + | chr5.3:66006949-66006968 | MS.gene32467:intron | 20.0% |
| !!! | TTATTATGTTTTGACTTTGT+AGG | + | chr5.3:66005925-66005944 | MS.gene32467:intron | 20.0% |
| !!! | TTCTTACAATTTGTTCAATT+GGG | + | chr5.3:66006167-66006186 | MS.gene32467:intron | 20.0% |
| !!! | TTTCTTACAATTTGTTCAAT+TGG | + | chr5.3:66006166-66006185 | MS.gene32467:intron | 20.0% |
| ! | AACAAGCAAAAATAGCAAAA+GGG | + | chr5.3:66005659-66005678 | MS.gene32467:CDS | 25.0% |
| ! | CTAAAATTTCCTGTTACATA+GGG | - | chr5.3:66007020-66007039 | None:intergenic | 25.0% |
| ! | TTATGTTCTGTTTAGTGTTT+AGG | + | chr5.3:66005829-66005848 | MS.gene32467:intron | 25.0% |
| ! | TTCGTTTGATTGAAATAGAA+CGG | + | chr5.3:66006497-66006516 | MS.gene32467:intron | 25.0% |
| ! | TTGATAAAAATGTCTGATCT+TGG | - | chr5.3:66006881-66006900 | None:intergenic | 25.0% |
| !! | AATGCTATTACTAATTTGTG+TGG | + | chr5.3:66006048-66006067 | MS.gene32467:CDS | 25.0% |
| !! | TATTACTAATTTGTGTGGTA+TGG | + | chr5.3:66006053-66006072 | MS.gene32467:intron | 25.0% |
| !! | TCTAAAATTTCCTGTTACAT+AGG | - | chr5.3:66007021-66007040 | None:intergenic | 25.0% |
| !!! | CAAATTTCGAGTTTTCAATT+TGG | - | chr5.3:66006710-66006729 | None:intergenic | 25.0% |
| !!! | GTTAACTTTTTCTTGTGTTA+TGG | + | chr5.3:66006127-66006146 | MS.gene32467:intron | 25.0% |
| AAAGTTCAAACAACGTATCA+TGG | - | chr5.3:66007485-66007504 | None:intergenic | 30.0% | |
| AACGGTCTATATTTCATGTT+TGG | + | chr5.3:66006515-66006534 | MS.gene32467:intron | 30.0% | |
| AAGTTCAAACAACGTATCAT+GGG | - | chr5.3:66007484-66007503 | None:intergenic | 30.0% | |
| AATCATACAAAGTAGAGAGT+AGG | - | chr5.3:66006439-66006458 | None:intergenic | 30.0% | |
| ACACTAAACAGAACATAACA+AGG | - | chr5.3:66005827-66005846 | None:intergenic | 30.0% | |
| ACTCTCTACTTTGTATGATT+AGG | + | chr5.3:66006439-66006458 | MS.gene32467:intron | 30.0% | |
| AGTATCAGCTCAAAAATTTC+TGG | + | chr5.3:66005784-66005803 | MS.gene32467:CDS | 30.0% | |
| ATCATACAAAGTAGAGAGTA+GGG | - | chr5.3:66006438-66006457 | None:intergenic | 30.0% | |
| CATGTGAAAAGAAAGAAAAG+TGG | + | chr5.3:66006247-66006266 | MS.gene32467:CDS | 30.0% | |
| CTCTCTACTTTGTATGATTA+GGG | + | chr5.3:66006440-66006459 | MS.gene32467:intron | 30.0% | |
| CTGAACAGCTAAATAGAAAT+TGG | + | chr5.3:66006663-66006682 | MS.gene32467:intron | 30.0% | |
| GAACAAGCAAAAATAGCAAA+AGG | + | chr5.3:66005658-66005677 | MS.gene32467:CDS | 30.0% | |
| GAACTGTATTTGGACAATTA+TGG | + | chr5.3:66006208-66006227 | MS.gene32467:CDS | 30.0% | |
| TATGTGGAAAATCAAACCTT+AGG | - | chr5.3:66007318-66007337 | None:intergenic | 30.0% | |
| TCTTCATTTCCTATTAGGAA+GGG | + | chr5.3:66005685-66005704 | MS.gene32467:CDS | 30.0% | |
| TGATACATGATAGAACGTTA+TGG | + | chr5.3:66007434-66007453 | MS.gene32467:intron | 30.0% | |
| TTATCATCAACTTGAGAAAC+AGG | - | chr5.3:66005754-66005773 | None:intergenic | 30.0% | |
| TTCTTCATTTCCTATTAGGA+AGG | + | chr5.3:66005684-66005703 | MS.gene32467:CDS | 30.0% | |
| TTGATCAAAATCAGATGACT+CGG | + | chr5.3:66006565-66006584 | MS.gene32467:intron | 30.0% | |
| ! | AAGATCTCAATCGATTTATG+TGG | - | chr5.3:66007334-66007353 | None:intergenic | 30.0% |
| ! | AATGTAGTTTGACTTAAACC+CGG | - | chr5.3:66007817-66007836 | None:intergenic | 30.0% |
| ! | CACTTTTCTTTCTTTTCACA+TGG | - | chr5.3:66006249-66006268 | None:intergenic | 30.0% |
| !! | AGAAATTTTTGAGCTGATAC+TGG | - | chr5.3:66005785-66005804 | None:intergenic | 30.0% |
| !! | TTCATCTGATTTGCTACATT+TGG | - | chr5.3:66005719-66005738 | None:intergenic | 30.0% |
| ACCAATGAAAATTTGACAGC+AGG | - | chr5.3:66006619-66006638 | None:intergenic | 35.0% | |
| AGGTAGTAGTAGTACTAGTA+AGG | - | chr5.3:66006764-66006783 | None:intergenic | 35.0% | |
| ATTTAGCTGTTCAGATAGAC+TGG | - | chr5.3:66006657-66006676 | None:intergenic | 35.0% | |
| CAACATGTAGGAACTGTATT+TGG | + | chr5.3:66006198-66006217 | MS.gene32467:intron | 35.0% | |
| CATAAATTGCGGCTTCTAAA+CGG | - | chr5.3:66007633-66007652 | None:intergenic | 35.0% | |
| CCCTACTAAATATATGCACA+CGG | - | chr5.3:66006802-66006821 | None:intergenic | 35.0% | |
| CCGTGTGCATATATTTAGTA+GGG | + | chr5.3:66006799-66006818 | MS.gene32467:intron | 35.0% | |
| CGTTGTTTGAACTTTCAGAA+TGG | + | chr5.3:66007490-66007509 | MS.gene32467:intron | 35.0% | |
| GGAAAATCAAACCTTAGGAA+GGG | - | chr5.3:66007313-66007332 | None:intergenic | 35.0% | |
| GGGTTTAAGTCAAACTACAT+TGG | + | chr5.3:66007816-66007835 | MS.gene32467:CDS | 35.0% | |
| GGTAGTAGTAGTACTAGTAA+GGG | - | chr5.3:66006763-66006782 | None:intergenic | 35.0% | |
| GGTCTTCTTCATTTCCTATT+AGG | + | chr5.3:66005680-66005699 | MS.gene32467:CDS | 35.0% | |
| TAAATTGAGTCCCTGGTTAT+AGG | - | chr5.3:66006596-66006615 | None:intergenic | 35.0% | |
| TACACAATTGCAGCAAAGTA+TGG | - | chr5.3:66005865-66005884 | None:intergenic | 35.0% | |
| TAGAAGCCGCAATTTATGTA+TGG | + | chr5.3:66007635-66007654 | MS.gene32467:CDS | 35.0% | |
| TCCGTGTGCATATATTTAGT+AGG | + | chr5.3:66006798-66006817 | MS.gene32467:intron | 35.0% | |
| TGGAAAATCAAACCTTAGGA+AGG | - | chr5.3:66007314-66007333 | None:intergenic | 35.0% | |
| TTGTTGAGTTAATGCCTTCT+TGG | + | chr5.3:66006310-66006329 | MS.gene32467:CDS | 35.0% | |
| TTTAGATAGTTGCACTGCTA+TGG | + | chr5.3:66007035-66007054 | MS.gene32467:CDS | 35.0% | |
| ! | ACCTGCTGTCAAATTTTCAT+TGG | + | chr5.3:66006615-66006634 | MS.gene32467:intron | 35.0% |
| ! | ATGTAGTTTGACTTAAACCC+GGG | - | chr5.3:66007816-66007835 | None:intergenic | 35.0% |
| ! | TACACTTTTCCCTATGTAAC+AGG | + | chr5.3:66007008-66007027 | MS.gene32467:intron | 35.0% |
| ! | TCTTTCTTTTCACATGGTAC+AGG | - | chr5.3:66006243-66006262 | None:intergenic | 35.0% |
| !!! | TGTTTTGACTTTGTAGGATC+AGG | + | chr5.3:66005931-66005950 | MS.gene32467:intron | 35.0% |
| AAAAGGAGTTAGCACTGCAT+TGG | + | chr5.3:66006017-66006036 | MS.gene32467:CDS | 40.0% | |
| AGAAAAGTGGCAGAGAGAAA+TGG | + | chr5.3:66006260-66006279 | MS.gene32467:CDS | 40.0% | |
| AGGATGACTTTGTAGTCGAA+CGG | - | chr5.3:66007699-66007718 | None:intergenic | 40.0% | |
| CTACTACTACCTTTGACAGT+AGG | + | chr5.3:66006772-66006791 | MS.gene32467:intron | 40.0% | |
| CTGATTTCTCTTGCGAAAAG+AGG | - | chr5.3:66007112-66007131 | None:intergenic | 40.0% | |
| GTAGTACTAGTAAGGGATCT+CGG | - | chr5.3:66006756-66006775 | None:intergenic | 40.0% | |
| GTATGTTGACCAAGGAATTG+TGG | + | chr5.3:66007065-66007084 | MS.gene32467:CDS | 40.0% | |
| GTATTTGGATACCCTTCCTA+AGG | + | chr5.3:66007299-66007318 | MS.gene32467:CDS | 40.0% | |
| TCAGGATATGTTTGCCAAGA+AGG | - | chr5.3:66006327-66006346 | None:intergenic | 40.0% | |
| TCTAACATGTTCTGTTCTGC+AGG | + | chr5.3:66006841-66006860 | MS.gene32467:intron | 40.0% | |
| TCTTGGCAAACATATCCTGA+TGG | + | chr5.3:66006327-66006346 | MS.gene32467:CDS | 40.0% | |
| TTCGACTACAAAGTCATCCT+GGG | + | chr5.3:66007699-66007718 | MS.gene32467:CDS | 40.0% | |
| TTGACTTTGTAGGATCAGGA+GGG | + | chr5.3:66005935-66005954 | MS.gene32467:intron | 40.0% | |
| TTGTAGTCATGTCAACGCAT+TGG | + | chr5.3:66006467-66006486 | MS.gene32467:intron | 40.0% | |
| ! | ACATGGCTGCTTTCAGTATT+TGG | - | chr5.3:66007236-66007255 | None:intergenic | 40.0% |
| ! | ACTCGGATTTTCCTATAACC+AGG | + | chr5.3:66006582-66006601 | MS.gene32467:intron | 40.0% |
| ! | AGCAATGCTGTTGATAGACA+TGG | - | chr5.3:66007253-66007272 | None:intergenic | 40.0% |
| ! | CAGCATTGCTTTAGATGACA+TGG | + | chr5.3:66007263-66007282 | MS.gene32467:CDS | 40.0% |
| ! | CTCGGATTTTCCTATAACCA+GGG | + | chr5.3:66006583-66006602 | MS.gene32467:intron | 40.0% |
| ! | CTTTTCGCAAGAGAAATCAG+CGG | + | chr5.3:66007112-66007131 | MS.gene32467:CDS | 40.0% |
| ! | TACCAAGAACTAGCCTACAT+TGG | - | chr5.3:66006965-66006984 | None:intergenic | 40.0% |
| ! | TGCTTGGTGAAGATATGTCA+GGG | + | chr5.3:66005989-66006008 | MS.gene32467:CDS | 40.0% |
| ! | TTCCAATGTAGGCTAGTTCT+TGG | + | chr5.3:66006960-66006979 | MS.gene32467:intron | 40.0% |
| ! | TTTGACTTTGTAGGATCAGG+AGG | + | chr5.3:66005934-66005953 | MS.gene32467:intron | 40.0% |
| !! | AAGGGTATCCAAATACGACT+CGG | - | chr5.3:66007295-66007314 | None:intergenic | 40.0% |
| !! | ATGGATTGGCTTCTTTGTGT+TGG | + | chr5.3:66006279-66006298 | MS.gene32467:CDS | 40.0% |
| !! | CTGGTGCCATACATAAATTG+CGG | - | chr5.3:66007644-66007663 | None:intergenic | 40.0% |
| !! | GAGTTTTGGTATGTTGACCA+AGG | + | chr5.3:66007057-66007076 | MS.gene32467:CDS | 40.0% |
| !! | TGGGATTTGTTGCAACATGT+AGG | + | chr5.3:66006186-66006205 | MS.gene32467:intron | 40.0% |
| ACTTTGTAGTCGAACGGCTA+GGG | - | chr5.3:66007693-66007712 | None:intergenic | 45.0% | |
| AGGTTTGCGAAGTTACTGCT+TGG | + | chr5.3:66005973-66005992 | MS.gene32467:CDS | 45.0% | |
| AGTGGCAGAGAGAAATGGAT+TGG | + | chr5.3:66006265-66006284 | MS.gene32467:CDS | 45.0% | |
| ATCAGGAGGGGATATGATGA+AGG | + | chr5.3:66005948-66005967 | MS.gene32467:intron | 45.0% | |
| CAGAATGGAAGAACGTGCTT+GGG | + | chr5.3:66007505-66007524 | MS.gene32467:intron | 45.0% | |
| CTCAAGTGCAACATGCTCAT+TGG | - | chr5.3:66007602-66007621 | None:intergenic | 45.0% | |
| GACATAGTGCCCTTCCTAAT+AGG | - | chr5.3:66005697-66005716 | None:intergenic | 45.0% | |
| GAGGGGATATGATGAAGGAA+AGG | + | chr5.3:66005953-66005972 | MS.gene32467:CDS | 45.0% | |
| GATATGTCAGGGTCTGGAAA+AGG | + | chr5.3:66006000-66006019 | MS.gene32467:CDS | 45.0% | |
| GGACATTGTGAAGGACTTCA+TGG | + | chr5.3:66007720-66007739 | MS.gene32467:CDS | 45.0% | |
| GTGAAGGACTTCATGGTTGA+TGG | + | chr5.3:66007727-66007746 | MS.gene32467:CDS | 45.0% | |
| GTTCGACTACAAAGTCATCC+TGG | + | chr5.3:66007698-66007717 | MS.gene32467:CDS | 45.0% | |
| TCAGAATGGAAGAACGTGCT+TGG | + | chr5.3:66007504-66007523 | MS.gene32467:intron | 45.0% | |
| TCCTGATGGTAGTAAGCTAG+AGG | + | chr5.3:66006341-66006360 | MS.gene32467:CDS | 45.0% | |
| TCTTGAGTTCTCACTGAGAC+CGG | - | chr5.3:66007181-66007200 | None:intergenic | 45.0% | |
| TGACTTTGTAGGATCAGGAG+GGG | + | chr5.3:66005936-66005955 | MS.gene32467:intron | 45.0% | |
| TTGTCGAGTTTACGTAGAGC+TGG | - | chr5.3:66006908-66006927 | None:intergenic | 45.0% | |
| ! | AATGGGTCTTGTAGTTCCAC+TGG | + | chr5.3:66005613-66005632 | MS.gene32467:CDS | 45.0% |
| ! | ACCTCTAGCTTACTACCATC+AGG | - | chr5.3:66006345-66006364 | None:intergenic | 45.0% |
| ! | AGGGTATCCAAATACGACTC+GGG | - | chr5.3:66007294-66007313 | None:intergenic | 45.0% |
| ! | CTGCTTGGTGAAGATATGTC+AGG | + | chr5.3:66005988-66006007 | MS.gene32467:CDS | 45.0% |
| ! | GTGGTTTAGAGTGAGATCTC+TGG | - | chr5.3:66007663-66007682 | None:intergenic | 45.0% |
| ! | GTTGCACTGCTATGGAGTTT+TGG | + | chr5.3:66007043-66007062 | MS.gene32467:CDS | 45.0% |
| ATCTGAGCAACACGATCCAG+TGG | - | chr5.3:66005632-66005651 | None:intergenic | 50.0% | |
| ATTGTGGCACCAGATGCAGA+TGG | + | chr5.3:66007081-66007100 | MS.gene32467:CDS | 50.0% | |
| CAAGAGAAATCAGCGGCAAG+AGG | + | chr5.3:66007119-66007138 | MS.gene32467:CDS | 50.0% | |
| CAGCAGGTAAATTGAGTCCC+TGG | - | chr5.3:66006603-66006622 | None:intergenic | 50.0% | |
| GAAGTCCTTCACAATGTCCC+AGG | - | chr5.3:66007719-66007738 | None:intergenic | 50.0% | |
| GACTTTGTAGTCGAACGGCT+AGG | - | chr5.3:66007694-66007713 | None:intergenic | 50.0% | |
| GCAAGCACTCTTGAGAGAAC+TGG | - | chr5.3:66007561-66007580 | None:intergenic | 50.0% | |
| GCACTCTTGAGAGAACTGGT+CGG | - | chr5.3:66007557-66007576 | None:intergenic | 50.0% | |
| GGAAGTTCCCGAGTCGTATT+TGG | + | chr5.3:66007284-66007303 | MS.gene32467:CDS | 50.0% | |
| GGTGAAGATATGTCAGGGTC+TGG | + | chr5.3:66005994-66006013 | MS.gene32467:CDS | 50.0% | |
| GTCATCCTGGGACATTGTGA+AGG | + | chr5.3:66007711-66007730 | MS.gene32467:CDS | 50.0% | |
| TTCATTGAAGCAGCGCTTCC+CGG | + | chr5.3:66007795-66007814 | MS.gene32467:CDS | 50.0% | |
| ! | CACGGATTGCCTACTGTCAA+AGG | - | chr5.3:66006784-66006803 | None:intergenic | 50.0% |
| !! | CATCTGGTGCCACAATTCCT+TGG | - | chr5.3:66007077-66007096 | None:intergenic | 50.0% |
| ATCAGCGGCAAGAGGAGAAG+TGG | + | chr5.3:66007127-66007146 | MS.gene32467:CDS | 55.0% | |
| GAGGCTGATCCATCTGCATC+TGG | - | chr5.3:66007093-66007112 | None:intergenic | 55.0% | |
| TCATTGAAGCAGCGCTTCCC+GGG | + | chr5.3:66007796-66007815 | MS.gene32467:CDS | 55.0% | |
| AGCGGCAAGAGGAGAAGTGG+TGG | + | chr5.3:66007130-66007149 | MS.gene32467:CDS | 60.0% | |
| GAACGGCTAGGGTAGAGTGG+TGG | - | chr5.3:66007682-66007701 | None:intergenic | 60.0% | |
| GAGTTCTCACTGAGACCGGC+AGG | - | chr5.3:66007177-66007196 | None:intergenic | 60.0% | |
| GTCGAACGGCTAGGGTAGAG+TGG | - | chr5.3:66007685-66007704 | None:intergenic | 60.0% | |
| TTCTCACTGAGACCGGCAGG+AGG | - | chr5.3:66007174-66007193 | None:intergenic | 60.0% | |
| ! | CAGGAGGCACACGGGGTACT+GGG | - | chr5.3:66007158-66007177 | None:intergenic | 65.0% |
| ! | TGAGACCGGCAGGAGGCACA+CGG | - | chr5.3:66007167-66007186 | None:intergenic | 65.0% |
| GTACCCCGTGTGCCTCCTGC+CGG | + | chr5.3:66007159-66007178 | MS.gene32467:CDS | 70.0% | |
| ! | AGACCGGCAGGAGGCACACG+GGG | - | chr5.3:66007165-66007184 | None:intergenic | 70.0% |
| ! | GAGACCGGCAGGAGGCACAC+GGG | - | chr5.3:66007166-66007185 | None:intergenic | 70.0% |
| ! | GCAGGAGGCACACGGGGTAC+TGG | - | chr5.3:66007159-66007178 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 66005568 | 66007864 | 66005568 | ID=MS.gene32467 |
| chr5.3 | mRNA | 66005568 | 66007864 | 66005568 | ID=MS.gene32467.t1;Parent=MS.gene32467 |
| chr5.3 | exon | 66005568 | 66005805 | 66005568 | ID=MS.gene32467.t1.exon1;Parent=MS.gene32467.t1 |
| chr5.3 | CDS | 66005568 | 66005805 | 66005568 | ID=cds.MS.gene32467.t1;Parent=MS.gene32467.t1 |
| chr5.3 | exon | 66005953 | 66006069 | 66005953 | ID=MS.gene32467.t1.exon2;Parent=MS.gene32467.t1 |
| chr5.3 | CDS | 66005953 | 66006069 | 66005953 | ID=cds.MS.gene32467.t1;Parent=MS.gene32467.t1 |
| chr5.3 | exon | 66006208 | 66006362 | 66006208 | ID=MS.gene32467.t1.exon3;Parent=MS.gene32467.t1 |
| chr5.3 | CDS | 66006208 | 66006362 | 66006208 | ID=cds.MS.gene32467.t1;Parent=MS.gene32467.t1 |
| chr5.3 | exon | 66006863 | 66006937 | 66006863 | ID=MS.gene32467.t1.exon4;Parent=MS.gene32467.t1 |
| chr5.3 | CDS | 66006863 | 66006937 | 66006863 | ID=cds.MS.gene32467.t1;Parent=MS.gene32467.t1 |
| chr5.3 | exon | 66007030 | 66007320 | 66007030 | ID=MS.gene32467.t1.exon5;Parent=MS.gene32467.t1 |
| chr5.3 | CDS | 66007030 | 66007320 | 66007030 | ID=cds.MS.gene32467.t1;Parent=MS.gene32467.t1 |
| chr5.3 | exon | 66007508 | 66007864 | 66007508 | ID=MS.gene32467.t1.exon6;Parent=MS.gene32467.t1 |
| chr5.3 | CDS | 66007508 | 66007864 | 66007508 | ID=cds.MS.gene32467.t1;Parent=MS.gene32467.t1 |
| Gene Sequence |
| Protein sequence |
