Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32865.t1 | XP_013461799.1 | 97.2 | 431 | 12 | 0 | 1 | 431 | 19 | 449 | 1.90E-249 | 871.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32865.t1 | Q9FZI8 | 62.5 | 400 | 140 | 4 | 17 | 413 | 29 | 421 | 2.8e-145 | 516.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32865.t1 | A0A072V1F9 | 97.2 | 431 | 12 | 0 | 1 | 431 | 19 | 449 | 1.3e-249 | 871.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049369 | MS.gene32865 | 0.816356 | 5.77E-52 | -1.69E-46 |
| MS.gene049396 | MS.gene32865 | 0.837077 | 6.43E-57 | -1.69E-46 |
| MS.gene050502 | MS.gene32865 | 0.834769 | 2.48E-56 | -1.69E-46 |
| MS.gene050593 | MS.gene32865 | 0.80309 | 4.12E-49 | -1.69E-46 |
| MS.gene051387 | MS.gene32865 | 0.8119 | 5.56E-51 | -1.69E-46 |
| MS.gene051941 | MS.gene32865 | 0.803253 | 3.81E-49 | -1.69E-46 |
| MS.gene052414 | MS.gene32865 | 0.800991 | 1.11E-48 | -1.69E-46 |
| MS.gene052421 | MS.gene32865 | 0.801679 | 8.04E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene32865 | 0.838752 | 2.39E-57 | -1.69E-46 |
| MS.gene053505 | MS.gene32865 | 0.820273 | 7.48E-53 | -1.69E-46 |
| MS.gene05505 | MS.gene32865 | 0.80524 | 1.47E-49 | -1.69E-46 |
| MS.gene055224 | MS.gene32865 | 0.818694 | 1.72E-52 | -1.69E-46 |
| MS.gene055741 | MS.gene32865 | 0.813694 | 2.25E-51 | -1.69E-46 |
| MS.gene055744 | MS.gene32865 | 0.816144 | 6.43E-52 | -1.69E-46 |
| MS.gene055909 | MS.gene32865 | 0.841635 | 4.22E-58 | -1.69E-46 |
| MS.gene055911 | MS.gene32865 | 0.842723 | 2.17E-58 | -1.69E-46 |
| MS.gene056166 | MS.gene32865 | 0.810156 | 1.33E-50 | -1.69E-46 |
| MS.gene056422 | MS.gene32865 | 0.845502 | 3.90E-59 | -1.69E-46 |
| MS.gene056511 | MS.gene32865 | 0.827212 | 1.77E-54 | -1.69E-46 |
| MS.gene05664 | MS.gene32865 | 0.831826 | 1.34E-55 | -1.69E-46 |
| MS.gene05666 | MS.gene32865 | 0.814125 | 1.81E-51 | -1.69E-46 |
| MS.gene057019 | MS.gene32865 | 0.831576 | 1.54E-55 | -1.69E-46 |
| MS.gene057086 | MS.gene32865 | 0.831996 | 1.22E-55 | -1.69E-46 |
| MS.gene057734 | MS.gene32865 | 0.813882 | 2.04E-51 | -1.69E-46 |
| MS.gene058075 | MS.gene32865 | 0.83101 | 2.13E-55 | -1.69E-46 |
| MS.gene058995 | MS.gene32865 | 0.811774 | 5.92E-51 | -1.69E-46 |
| MS.gene059305 | MS.gene32865 | 0.802533 | 5.36E-49 | -1.69E-46 |
| MS.gene059674 | MS.gene32865 | 0.816477 | 5.42E-52 | -1.69E-46 |
| MS.gene059807 | MS.gene32865 | 0.875225 | 3.64E-68 | -1.69E-46 |
| MS.gene059870 | MS.gene32865 | 0.810262 | 1.26E-50 | -1.69E-46 |
| MS.gene059933 | MS.gene32865 | 0.823541 | 1.31E-53 | -1.69E-46 |
| MS.gene060372 | MS.gene32865 | 0.837303 | 5.63E-57 | -1.69E-46 |
| MS.gene060401 | MS.gene32865 | 0.827159 | 1.82E-54 | -1.69E-46 |
| MS.gene060403 | MS.gene32865 | 0.822017 | 2.97E-53 | -1.69E-46 |
| MS.gene060837 | MS.gene32865 | 0.817245 | 3.65E-52 | -1.69E-46 |
| MS.gene06097 | MS.gene32865 | 0.874776 | 5.19E-68 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32865.t1 | MTR_3g103300 | 97.216 | 431 | 12 | 0 | 1 | 431 | 19 | 449 | 0.0 | 866 |
| MS.gene32865.t1 | MTR_2g075650 | 95.918 | 49 | 2 | 0 | 157 | 205 | 25 | 73 | 2.11e-24 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32865.t1 | AT1G27480 | 60.870 | 414 | 151 | 5 | 4 | 413 | 15 | 421 | 0.0 | 514 |
Find 88 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAGGTCGTTTAGGAATT+TGG | 0.093532 | 3.1:-81792321 | None:intergenic |
| AAAATGGATGGTTTAGATTA+TGG | 0.209097 | 3.1:+81790811 | MS.gene32865:CDS |
| AAGAAGAAGGGTTTCGATTA+AGG | 0.254545 | 3.1:-81792433 | None:intergenic |
| GTTGCACTTGATGAAATAAT+TGG | 0.291740 | 3.1:+81793019 | MS.gene32865:CDS |
| TTAATCGAAACCCTTCTTCT+TGG | 0.309291 | 3.1:+81792435 | MS.gene32865:CDS |
| TCAAATTCTTTAGGTCGTTT+AGG | 0.309491 | 3.1:-81792328 | None:intergenic |
| TTATCAATATCAAACATCTT+AGG | 0.316150 | 3.1:-81792629 | None:intergenic |
| TGTTGGCACTTGAATCTCTA+TGG | 0.323866 | 3.1:+81792921 | MS.gene32865:CDS |
| TTTGCATCAGGCAATACTTT+GGG | 0.325360 | 3.1:+81792530 | MS.gene32865:CDS |
| CTCATGCTCAACTTGGTCTA+AGG | 0.334682 | 3.1:+81793062 | MS.gene32865:CDS |
| TCATAAGGATAAACCCCTTC+AGG | 0.343915 | 3.1:-81792725 | None:intergenic |
| ATACCATGGATCACAAATTA+AGG | 0.343972 | 3.1:-81790772 | None:intergenic |
| GTGGCTATGACTTGTATTAT+AGG | 0.349728 | 3.1:+81792791 | MS.gene32865:CDS |
| TGCGCTGAATAGCTTCTATA+TGG | 0.355751 | 3.1:-81792668 | None:intergenic |
| CTGTGTGAGACAAGTATTAC+TGG | 0.360336 | 3.1:-81792383 | None:intergenic |
| GGTAGAAGGTTTATATTTAG+TGG | 0.367636 | 3.1:-81790751 | None:intergenic |
| GGATCACAAATTAAGGTAGA+AGG | 0.371811 | 3.1:-81790765 | None:intergenic |
| GTTGTTGTTGCTTGTGCTAA+TGG | 0.373911 | 3.1:-81790670 | None:intergenic |
| AAGCTATTCAGCGCATGATA+TGG | 0.395729 | 3.1:+81792676 | MS.gene32865:CDS |
| GAACAGCTTGGTTACATAGA+TGG | 0.397233 | 3.1:+81792224 | MS.gene32865:CDS |
| TAGACCATATCGAAAATCAT+AGG | 0.397497 | 3.1:-81792267 | None:intergenic |
| TACTTGAAAGTTATTAAGAT+TGG | 0.398069 | 3.1:+81792962 | MS.gene32865:CDS |
| ATAGATGGTGAAAATCTGTT+TGG | 0.403610 | 3.1:+81792239 | MS.gene32865:CDS |
| ATACAAGTCATAGCCACTTC+TGG | 0.404583 | 3.1:-81792785 | None:intergenic |
| TTATAGCACTTTCTGCTCCA+TGG | 0.410868 | 3.1:+81792480 | MS.gene32865:CDS |
| ATATCAAACATCTTAGGATT+AGG | 0.419667 | 3.1:-81792623 | None:intergenic |
| CTACCTTAATTTGTGATCCA+TGG | 0.426147 | 3.1:+81790769 | MS.gene32865:CDS |
| GAGACACGTGTCCCTAGCTT+TGG | 0.437492 | 3.1:+81790939 | MS.gene32865:CDS |
| TATAGCACTTTCTGCTCCAT+GGG | 0.439917 | 3.1:+81792481 | MS.gene32865:CDS |
| TATTACTGGCTTCCCTCCAT+TGG | 0.440820 | 3.1:-81792369 | None:intergenic |
| TTCCTATAAAACAATTCCTC+TGG | 0.446085 | 3.1:-81792830 | None:intergenic |
| CTGTTCTAATGATTCTACTA+AGG | 0.448413 | 3.1:-81792207 | None:intergenic |
| GGTAAAATGCGAGTTTCATA+AGG | 0.448911 | 3.1:-81792740 | None:intergenic |
| AGTTGGTTCCCTCCATTACC+TGG | 0.449098 | 3.1:-81790714 | None:intergenic |
| AATTTCTTGCGCCAAGAAGA+AGG | 0.455307 | 3.1:-81792446 | None:intergenic |
| GTTCATTTCTTACTAGCAAA+GGG | 0.458490 | 3.1:-81792568 | None:intergenic |
| TTACCTGGTATTAGTATCAC+TGG | 0.464879 | 3.1:-81790699 | None:intergenic |
| ACTAGCAAAGGGTTGACTAA+TGG | 0.470555 | 3.1:-81792557 | None:intergenic |
| CATACGAGAAGCAAAACATT+TGG | 0.473192 | 3.1:-81790865 | None:intergenic |
| TGAAAGTTATTAAGATTGGT+GGG | 0.480822 | 3.1:+81792966 | MS.gene32865:CDS |
| TGTTCATTTCTTACTAGCAA+AGG | 0.481119 | 3.1:-81792569 | None:intergenic |
| TTGAAAGTTATTAAGATTGG+TGG | 0.484679 | 3.1:+81792965 | MS.gene32865:CDS |
| TACTTGTGTAGGCTTGTCAC+AGG | 0.491877 | 3.1:+81792173 | MS.gene32865:intron |
| ATACTTGTCTCACACAGCTT+GGG | 0.495176 | 3.1:+81792389 | MS.gene32865:CDS |
| AATACTTGTCTCACACAGCT+TGG | 0.497555 | 3.1:+81792388 | MS.gene32865:CDS |
| GAGGAAGTAGAACCAAAGCT+AGG | 0.502927 | 3.1:-81790951 | None:intergenic |
| GTAGAATCATTAGAACAGCT+TGG | 0.503633 | 3.1:+81792212 | MS.gene32865:CDS |
| GTGATACTAATACCAGGTAA+TGG | 0.511981 | 3.1:+81790702 | MS.gene32865:CDS |
| ATTAATTCTCATGCTCAACT+TGG | 0.515483 | 3.1:+81793055 | MS.gene32865:CDS |
| AATTTGGAACCAACTTGAGA+TGG | 0.518350 | 3.1:-81792305 | None:intergenic |
| TGTGAACATGGTGAGCTTGT+TGG | 0.520209 | 3.1:+81792904 | MS.gene32865:CDS |
| TTGCATCAGGCAATACTTTG+GGG | 0.522896 | 3.1:+81792531 | MS.gene32865:CDS |
| CGATATGGTCTAGCTGCACC+AGG | 0.525375 | 3.1:+81792278 | MS.gene32865:CDS |
| GGTTTCGATTAAGGAGTTCG+AGG | 0.526959 | 3.1:-81792424 | None:intergenic |
| ATGACTTGTATTATAGGAAA+GGG | 0.529339 | 3.1:+81792797 | MS.gene32865:CDS |
| GGGACACGTGTCTCCACTCC+AGG | 0.536426 | 3.1:-81790930 | None:intergenic |
| TTCTTGAAAGGAGGATACCA+TGG | 0.540741 | 3.1:-81790786 | None:intergenic |
| GTATTAGTATCACTGGATTG+AGG | 0.543116 | 3.1:-81790692 | None:intergenic |
| ATTTGGAACCAACTTGAGAT+GGG | 0.545508 | 3.1:-81792304 | None:intergenic |
| TATGACTTGTATTATAGGAA+AGG | 0.546133 | 3.1:+81792796 | MS.gene32865:CDS |
| TAGGATTAGGCAAAAGCCAT+AGG | 0.550005 | 3.1:-81792610 | None:intergenic |
| TAGGCTTGTCACAGGGTACA+TGG | 0.553390 | 3.1:+81792181 | MS.gene32865:intron |
| TCATCAACAGTTCCACCCCA+TGG | 0.553701 | 3.1:-81792497 | None:intergenic |
| GAAAATCGATGCACCAGAAG+TGG | 0.561621 | 3.1:+81792772 | MS.gene32865:CDS |
| CTTGTCTCACACAGCTTGGG+AGG | 0.564047 | 3.1:+81792392 | MS.gene32865:CDS |
| GAAAGTTATTAAGATTGGTG+GGG | 0.564534 | 3.1:+81792967 | MS.gene32865:CDS |
| GAAGCAAAACATTTGGTGAA+AGG | 0.565167 | 3.1:-81790858 | None:intergenic |
| TGTTCTAATGATTCTACTAA+GGG | 0.567395 | 3.1:-81792206 | None:intergenic |
| TGCATCAGGCAATACTTTGG+GGG | 0.570619 | 3.1:+81792532 | MS.gene32865:CDS |
| GCACTTTCTGCTCCATGGGG+TGG | 0.574507 | 3.1:+81792485 | MS.gene32865:CDS |
| ATTTCTTGCGCCAAGAAGAA+GGG | 0.574514 | 3.1:-81792445 | None:intergenic |
| AGGAAGTAGAACCAAAGCTA+GGG | 0.574724 | 3.1:-81790950 | None:intergenic |
| AGACCATATCGAAAATCATA+GGG | 0.574772 | 3.1:-81792266 | None:intergenic |
| GCTTGTGCTAATGGCAACAT+TGG | 0.575689 | 3.1:-81790661 | None:intergenic |
| AGGATTAAGATAAAGAAGAG+AGG | 0.580569 | 3.1:-81790970 | None:intergenic |
| GAACTTCTGAGAGTAACCTA+TGG | 0.593616 | 3.1:+81792594 | MS.gene32865:CDS |
| CCAACTTGAGATGGGTGACC+TGG | 0.599702 | 3.1:-81792296 | None:intergenic |
| ATACTAATACCAGGTAATGG+AGG | 0.600946 | 3.1:+81790705 | MS.gene32865:CDS |
| AAAGCAAGCAATTCCAATGG+AGG | 0.603247 | 3.1:+81792356 | MS.gene32865:CDS |
| CCAGGTCACCCATCTCAAGT+TGG | 0.608401 | 3.1:+81792296 | MS.gene32865:CDS |
| TGGTGACGGAACTGTGAACA+TGG | 0.612065 | 3.1:+81792892 | MS.gene32865:CDS |
| ACTTGTGTAGGCTTGTCACA+GGG | 0.624634 | 3.1:+81792174 | MS.gene32865:intron |
| AAGCAAGCAATTCCAATGGA+GGG | 0.626020 | 3.1:+81792357 | MS.gene32865:CDS |
| TACTAATACCAGGTAATGGA+GGG | 0.631997 | 3.1:+81790706 | MS.gene32865:CDS |
| ATAGCACTTTCTGCTCCATG+GGG | 0.637994 | 3.1:+81792482 | MS.gene32865:CDS |
| AATCCAGTGATACTAATACC+AGG | 0.663374 | 3.1:+81790696 | MS.gene32865:CDS |
| AAATAAACTTACTTAAGACG+AGG | 0.677738 | 3.1:-81790990 | None:intergenic |
| AAAGGGTGTGAAGACTCCAG+AGG | 0.728760 | 3.1:+81792814 | MS.gene32865:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCTTTCAATTATTATAT+GGG | + | chr3.1:81791741-81791760 | MS.gene32865:intron | 10.0% |
| !! | TTCAATAAAAAGTTATTATA+TGG | + | chr3.1:81792126-81792145 | MS.gene32865:intron | 10.0% |
| !! | TTTATCTTTCAATTATTATA+TGG | + | chr3.1:81791740-81791759 | MS.gene32865:intron | 10.0% |
| !! | AGGAAATAAAACAAAATTTA+AGG | - | chr3.1:81791033-81791052 | None:intergenic | 15.0% |
| !! | AACATTACTGTATTATTGTA+AGG | - | chr3.1:81792154-81792173 | None:intergenic | 20.0% |
| !! | ATTAAAGTTTCACTAAATCA+AGG | - | chr3.1:81791143-81791162 | None:intergenic | 20.0% |
| !! | TACTTGAAAGTTATTAAGAT+TGG | + | chr3.1:81792962-81792981 | MS.gene32865:CDS | 20.0% |
| !! | TTATCAATATCAAACATCTT+AGG | - | chr3.1:81792632-81792651 | None:intergenic | 20.0% |
| !! | TTTACATCTATATAAAGCTA+CGG | + | chr3.1:81791978-81791997 | MS.gene32865:intron | 20.0% |
| !!! | AAAAGTGTCTTTTTTTTCTT+TGG | - | chr3.1:81791960-81791979 | None:intergenic | 20.0% |
| !!! | AATTTTTTTTTGTGTTAACC+GGG | - | chr3.1:81791546-81791565 | None:intergenic | 20.0% |
| !!! | ATTCATGTTAGTCTTTTTTT+AGG | + | chr3.1:81791319-81791338 | MS.gene32865:intron | 20.0% |
| !!! | CAATTTTTTTTTGTGTTAAC+CGG | - | chr3.1:81791547-81791566 | None:intergenic | 20.0% |
| !!! | CTTTTTCTATCAAATTCTTT+AGG | - | chr3.1:81792340-81792359 | None:intergenic | 20.0% |
| !!! | GTTGATTTTCTTAAAGATAT+TGG | + | chr3.1:81792698-81792717 | MS.gene32865:CDS | 20.0% |
| ! | AAAAGATTTAACATTGCTCA+TGG | - | chr3.1:81791453-81791472 | None:intergenic | 25.0% |
| ! | AAAATGGATGGTTTAGATTA+TGG | + | chr3.1:81790811-81790830 | MS.gene32865:CDS | 25.0% |
| ! | AAATAAACTTACTTAAGACG+AGG | - | chr3.1:81790993-81791012 | None:intergenic | 25.0% |
| ! | ATATCAAACATCTTAGGATT+AGG | - | chr3.1:81792626-81792645 | None:intergenic | 25.0% |
| ! | ATATTATCAAATTAGTCCGA+AGG | - | chr3.1:81791357-81791376 | None:intergenic | 25.0% |
| ! | CTTTCAATTATTATATGGGA+AGG | + | chr3.1:81791745-81791764 | MS.gene32865:intron | 25.0% |
| ! | GACGAGAAATTATAAATTGT+TGG | - | chr3.1:81791611-81791630 | None:intergenic | 25.0% |
| ! | GTGCATTAAAAAAATCATCA+AGG | - | chr3.1:81790911-81790930 | None:intergenic | 25.0% |
| ! | TGAAAGTTATTAAGATTGGT+GGG | + | chr3.1:81792966-81792985 | MS.gene32865:CDS | 25.0% |
| ! | TGTTCTAATGATTCTACTAA+GGG | - | chr3.1:81792209-81792228 | None:intergenic | 25.0% |
| ! | TTGAAAGTTATTAAGATTGG+TGG | + | chr3.1:81792965-81792984 | MS.gene32865:CDS | 25.0% |
| !! | ATGACTTGTATTATAGGAAA+GGG | + | chr3.1:81792797-81792816 | MS.gene32865:CDS | 25.0% |
| !! | ATGAGCAATGTTAAATCTTT+TGG | + | chr3.1:81791452-81791471 | MS.gene32865:intron | 25.0% |
| !! | CTTTTCTAGATAGATTGAAT+CGG | + | chr3.1:81791810-81791829 | MS.gene32865:intron | 25.0% |
| !! | TATGACTTGTATTATAGGAA+AGG | + | chr3.1:81792796-81792815 | MS.gene32865:CDS | 25.0% |
| !! | TGAGCAATGTTAAATCTTTT+GGG | + | chr3.1:81791453-81791472 | MS.gene32865:intron | 25.0% |
| !!! | ATCTAGAAAAGTGTTCATAT+AGG | - | chr3.1:81791801-81791820 | None:intergenic | 25.0% |
| !!! | TTATTTCCTGTACTTTGTTT+TGG | + | chr3.1:81791044-81791063 | MS.gene32865:intron | 25.0% |
| AAACTTCCAAAACAAAGTAC+AGG | - | chr3.1:81791053-81791072 | None:intergenic | 30.0% | |
| AGACCATATCGAAAATCATA+GGG | - | chr3.1:81792269-81792288 | None:intergenic | 30.0% | |
| AGGATTAAGATAAAGAAGAG+AGG | - | chr3.1:81790973-81790992 | None:intergenic | 30.0% | |
| ATAATAACTAGAGCTCATGA+TGG | - | chr3.1:81791226-81791245 | None:intergenic | 30.0% | |
| ATACCATGGATCACAAATTA+AGG | - | chr3.1:81790775-81790794 | None:intergenic | 30.0% | |
| ATAGATGGTGAAAATCTGTT+TGG | + | chr3.1:81792239-81792258 | MS.gene32865:CDS | 30.0% | |
| ATTAATTCTCATGCTCAACT+TGG | + | chr3.1:81793055-81793074 | MS.gene32865:CDS | 30.0% | |
| CATTATGAGATCATCCAATT+TGG | + | chr3.1:81791103-81791122 | MS.gene32865:intron | 30.0% | |
| CTGTTCTAATGATTCTACTA+AGG | - | chr3.1:81792210-81792229 | None:intergenic | 30.0% | |
| CTTTCAAGAAGAAAAATGGA+TGG | + | chr3.1:81790799-81790818 | MS.gene32865:CDS | 30.0% | |
| GAAAGTTATTAAGATTGGTG+GGG | + | chr3.1:81792967-81792986 | MS.gene32865:CDS | 30.0% | |
| GGTAGAAGGTTTATATTTAG+TGG | - | chr3.1:81790754-81790773 | None:intergenic | 30.0% | |
| GTTAGAACCTTGAAATTGTA+GGG | - | chr3.1:81791667-81791686 | None:intergenic | 30.0% | |
| GTTCATTTCTTACTAGCAAA+GGG | - | chr3.1:81792571-81792590 | None:intergenic | 30.0% | |
| GTTGCACTTGATGAAATAAT+TGG | + | chr3.1:81793019-81793038 | MS.gene32865:CDS | 30.0% | |
| TAATTTCTCGTCAATTTCGT+AGG | + | chr3.1:81791619-81791638 | MS.gene32865:intron | 30.0% | |
| TAGACCATATCGAAAATCAT+AGG | - | chr3.1:81792270-81792289 | None:intergenic | 30.0% | |
| TCAAATTCTTTAGGTCGTTT+AGG | - | chr3.1:81792331-81792350 | None:intergenic | 30.0% | |
| TGCTAAAAGACTATACTGTT+TGG | + | chr3.1:81791575-81791594 | MS.gene32865:intron | 30.0% | |
| TGTTCATTTCTTACTAGCAA+AGG | - | chr3.1:81792572-81792591 | None:intergenic | 30.0% | |
| TTAGAACCTTGAAATTGTAG+GGG | - | chr3.1:81791666-81791685 | None:intergenic | 30.0% | |
| TTCCTATAAAACAATTCCTC+TGG | - | chr3.1:81792833-81792852 | None:intergenic | 30.0% | |
| ! | AGCAATGTTAAATCTTTTGG+GGG | + | chr3.1:81791455-81791474 | MS.gene32865:intron | 30.0% |
| ! | GAGCAATGTTAAATCTTTTG+GGG | + | chr3.1:81791454-81791473 | MS.gene32865:intron | 30.0% |
| ! | TACAGTAATGTTACTTGTGT+AGG | + | chr3.1:81792162-81792181 | MS.gene32865:intron | 30.0% |
| !! | CATCCATTTTTCTTCTTGAA+AGG | - | chr3.1:81790801-81790820 | None:intergenic | 30.0% |
| !! | GAAATGTTTACTTTTGCATC+AGG | + | chr3.1:81792518-81792537 | MS.gene32865:CDS | 30.0% |
| !! | GAGGAATTGTTTTATAGGAA+TGG | + | chr3.1:81792833-81792852 | MS.gene32865:CDS | 30.0% |
| !!! | AAAGATATTGGTTTTCCTGA+AGG | + | chr3.1:81792710-81792729 | MS.gene32865:CDS | 30.0% |
| !!! | AAGATATTGGTTTTCCTGAA+GGG | + | chr3.1:81792711-81792730 | MS.gene32865:CDS | 30.0% |
| !!! | AGTGTCTTTTTTTTCTTTGG+TGG | - | chr3.1:81791957-81791976 | None:intergenic | 30.0% |
| !!! | GATGATTTTTTTAATGCACC+TGG | + | chr3.1:81790912-81790931 | MS.gene32865:CDS | 30.0% |
| !!! | TTTTTTTATGGTGATGGTGA+CGG | + | chr3.1:81792878-81792897 | MS.gene32865:CDS | 30.0% |
| AAGAAGAAGGGTTTCGATTA+AGG | - | chr3.1:81792436-81792455 | None:intergenic | 35.0% | |
| AATCCAGTGATACTAATACC+AGG | + | chr3.1:81790696-81790715 | MS.gene32865:CDS | 35.0% | |
| AGATCATCCAATTTGGTTGT+GGG | + | chr3.1:81791110-81791129 | MS.gene32865:intron | 35.0% | |
| ATCACCATAAAAAAACTCCG+GGG | - | chr3.1:81792873-81792892 | None:intergenic | 35.0% | |
| ATTAATCAGTGTTCTCATGG+CGG | + | chr3.1:81792068-81792087 | MS.gene32865:intron | 35.0% | |
| CATACGAGAAGCAAAACATT+TGG | - | chr3.1:81790868-81790887 | None:intergenic | 35.0% | |
| CATCACCATAAAAAAACTCC+GGG | - | chr3.1:81792874-81792893 | None:intergenic | 35.0% | |
| CCATCACCATAAAAAAACTC+CGG | - | chr3.1:81792875-81792894 | None:intergenic | 35.0% | |
| CCTCCTTTCAAGAAGAAAAA+TGG | + | chr3.1:81790795-81790814 | MS.gene32865:CDS | 35.0% | |
| CTTTAGGTCGTTTAGGAATT+TGG | - | chr3.1:81792324-81792343 | None:intergenic | 35.0% | |
| GAAAAAGCAAGCAATTCCAA+TGG | + | chr3.1:81792353-81792372 | MS.gene32865:CDS | 35.0% | |
| GACAGTGCATAAAATATGCA+AGG | + | chr3.1:81791916-81791935 | MS.gene32865:intron | 35.0% | |
| GGATCACAAATTAAGGTAGA+AGG | - | chr3.1:81790768-81790787 | None:intergenic | 35.0% | |
| GGTAAAATGCGAGTTTCATA+AGG | - | chr3.1:81792743-81792762 | None:intergenic | 35.0% | |
| GGTTAGAACCTTGAAATTGT+AGG | - | chr3.1:81791668-81791687 | None:intergenic | 35.0% | |
| GTAGAATCATTAGAACAGCT+TGG | + | chr3.1:81792212-81792231 | MS.gene32865:CDS | 35.0% | |
| GTATTAGTATCACTGGATTG+AGG | - | chr3.1:81790695-81790714 | None:intergenic | 35.0% | |
| GTGATACTAATACCAGGTAA+TGG | + | chr3.1:81790702-81790721 | MS.gene32865:CDS | 35.0% | |
| GTTTCACTAAATCAAGGACT+TGG | - | chr3.1:81791137-81791156 | None:intergenic | 35.0% | |
| TCGTAGGTTCAAAATCAACT+TGG | + | chr3.1:81791635-81791654 | MS.gene32865:intron | 35.0% | |
| TGCATTAATCAGTGTTCTCA+TGG | + | chr3.1:81792065-81792084 | MS.gene32865:intron | 35.0% | |
| TTAATCGAAACCCTTCTTCT+TGG | + | chr3.1:81792435-81792454 | MS.gene32865:CDS | 35.0% | |
| TTACCTGGTATTAGTATCAC+TGG | - | chr3.1:81790702-81790721 | None:intergenic | 35.0% | |
| TTATCAATGAGTGTATCACC+AGG | - | chr3.1:81791689-81791708 | None:intergenic | 35.0% | |
| TTTGCATCAGGCAATACTTT+GGG | + | chr3.1:81792530-81792549 | MS.gene32865:CDS | 35.0% | |
| ! | AATTTGGAACCAACTTGAGA+TGG | - | chr3.1:81792308-81792327 | None:intergenic | 35.0% |
| ! | ACAATTTCAAGGTTCTAACC+TGG | + | chr3.1:81791668-81791687 | MS.gene32865:intron | 35.0% |
| ! | ATACTAATACCAGGTAATGG+AGG | + | chr3.1:81790705-81790724 | MS.gene32865:CDS | 35.0% |
| ! | ATTTGGAACCAACTTGAGAT+GGG | - | chr3.1:81792307-81792326 | None:intergenic | 35.0% |
| ! | GAAGCAAAACATTTGGTGAA+AGG | - | chr3.1:81790861-81790880 | None:intergenic | 35.0% |
| ! | GTGGCTATGACTTGTATTAT+AGG | + | chr3.1:81792791-81792810 | MS.gene32865:CDS | 35.0% |
| ! | TTTTGCATCAGGCAATACTT+TGG | + | chr3.1:81792529-81792548 | MS.gene32865:CDS | 35.0% |
| !! | CCATTTTTCTTCTTGAAAGG+AGG | - | chr3.1:81790798-81790817 | None:intergenic | 35.0% |
| !! | CTACCTTAATTTGTGATCCA+TGG | + | chr3.1:81790769-81790788 | MS.gene32865:CDS | 35.0% |
| !! | CTCCAGAGGAATTGTTTTAT+AGG | + | chr3.1:81792828-81792847 | MS.gene32865:CDS | 35.0% |
| !! | TACTAATACCAGGTAATGGA+GGG | + | chr3.1:81790706-81790725 | MS.gene32865:CDS | 35.0% |
| !!! | AGATATTGGTTTTCCTGAAG+GGG | + | chr3.1:81792712-81792731 | MS.gene32865:CDS | 35.0% |
| !!! | GTCTTTTTTTTCTTTGGTGG+TGG | - | chr3.1:81791954-81791973 | None:intergenic | 35.0% |
| !!! | TAGGCTAAGTTTTTAGCCTT+CGG | + | chr3.1:81791338-81791357 | MS.gene32865:intron | 35.0% |
| !!! | TGGTTAGTTTTGCTTCTAGT+TGG | - | chr3.1:81790734-81790753 | None:intergenic | 35.0% |
| !!! | TTTTTTTAATGCACCTGGAG+TGG | + | chr3.1:81790917-81790936 | MS.gene32865:CDS | 35.0% |
| AAAGCAAGCAATTCCAATGG+AGG | + | chr3.1:81792356-81792375 | MS.gene32865:CDS | 40.0% | |
| AAGCAAGCAATTCCAATGGA+GGG | + | chr3.1:81792357-81792376 | MS.gene32865:CDS | 40.0% | |
| AAGCTATTCAGCGCATGATA+TGG | + | chr3.1:81792676-81792695 | MS.gene32865:CDS | 40.0% | |
| AATACTTGTCTCACACAGCT+TGG | + | chr3.1:81792388-81792407 | MS.gene32865:CDS | 40.0% | |
| AATTTCTTGCGCCAAGAAGA+AGG | - | chr3.1:81792449-81792468 | None:intergenic | 40.0% | |
| ACTAGCAAAGGGTTGACTAA+TGG | - | chr3.1:81792560-81792579 | None:intergenic | 40.0% | |
| AGGAAGTAGAACCAAAGCTA+GGG | - | chr3.1:81790953-81790972 | None:intergenic | 40.0% | |
| ATACAAGTCATAGCCACTTC+TGG | - | chr3.1:81792788-81792807 | None:intergenic | 40.0% | |
| ATACTTGTCTCACACAGCTT+GGG | + | chr3.1:81792389-81792408 | MS.gene32865:CDS | 40.0% | |
| ATTTCTTGCGCCAAGAAGAA+GGG | - | chr3.1:81792448-81792467 | None:intergenic | 40.0% | |
| CGATCGAATTGACAAACTCA+CGG | - | chr3.1:81791186-81791205 | None:intergenic | 40.0% | |
| CTGTGTGAGACAAGTATTAC+TGG | - | chr3.1:81792386-81792405 | None:intergenic | 40.0% | |
| GAACAGCTTGGTTACATAGA+TGG | + | chr3.1:81792224-81792243 | MS.gene32865:CDS | 40.0% | |
| GAGATCATCCAATTTGGTTG+TGG | + | chr3.1:81791109-81791128 | MS.gene32865:intron | 40.0% | |
| GCAATACCCCTACAATTTCA+AGG | + | chr3.1:81791657-81791676 | MS.gene32865:intron | 40.0% | |
| TACAAAGACTAATCCCTCGA+AGG | - | chr3.1:81791504-81791523 | None:intergenic | 40.0% | |
| TAGATTCGAACCAGGATCTT+TGG | - | chr3.1:81791429-81791448 | None:intergenic | 40.0% | |
| TAGGATTAGGCAAAAGCCAT+AGG | - | chr3.1:81792613-81792632 | None:intergenic | 40.0% | |
| TATAGCACTTTCTGCTCCAT+GGG | + | chr3.1:81792481-81792500 | MS.gene32865:CDS | 40.0% | |
| TCACCATAAAAAAACTCCGG+GGG | - | chr3.1:81792872-81792891 | None:intergenic | 40.0% | |
| TCATAAGGATAAACCCCTTC+AGG | - | chr3.1:81792728-81792747 | None:intergenic | 40.0% | |
| TGCGCTGAATAGCTTCTATA+TGG | - | chr3.1:81792671-81792690 | None:intergenic | 40.0% | |
| TGGGAAGGAATATAATGCAG+TGG | + | chr3.1:81791760-81791779 | MS.gene32865:intron | 40.0% | |
| TGTTGGCACTTGAATCTCTA+TGG | + | chr3.1:81792921-81792940 | MS.gene32865:CDS | 40.0% | |
| TTATAGCACTTTCTGCTCCA+TGG | + | chr3.1:81792480-81792499 | MS.gene32865:CDS | 40.0% | |
| TTCAGCTTAACCAAAGATCC+TGG | + | chr3.1:81791416-81791435 | MS.gene32865:intron | 40.0% | |
| TTCTTGAAAGGAGGATACCA+TGG | - | chr3.1:81790789-81790808 | None:intergenic | 40.0% | |
| TTGCATCAGGCAATACTTTG+GGG | + | chr3.1:81792531-81792550 | MS.gene32865:CDS | 40.0% | |
| ! | AGAGCTCATGATGGAAAGTT+TGG | - | chr3.1:81791217-81791236 | None:intergenic | 40.0% |
| ! | GAACTTCTGAGAGTAACCTA+TGG | + | chr3.1:81792594-81792613 | MS.gene32865:CDS | 40.0% |
| ! | GCTCCCTATGATTTTCGATA+TGG | + | chr3.1:81792263-81792282 | MS.gene32865:CDS | 40.0% |
| ! | GTTGTTGTTGCTTGTGCTAA+TGG | - | chr3.1:81790673-81790692 | None:intergenic | 40.0% |
| !! | TTCTCATGGCGGACAAAATA+GGG | + | chr3.1:81792079-81792098 | MS.gene32865:intron | 40.0% |
| !!! | CCGGAGTTTTTTTATGGTGA+TGG | + | chr3.1:81792872-81792891 | MS.gene32865:CDS | 40.0% |
| !!! | GCATCGATTTTCGCTATCAA+AGG | - | chr3.1:81792764-81792783 | None:intergenic | 40.0% |
| !!! | TTTTTTTCTTTGGTGGTGGC+CGG | - | chr3.1:81791950-81791969 | None:intergenic | 40.0% |
| AATATGCAAGGTTCGAACCC+CGG | + | chr3.1:81791928-81791947 | MS.gene32865:intron | 45.0% | |
| ACTTGGTCCCACAACCAAAT+TGG | - | chr3.1:81791120-81791139 | None:intergenic | 45.0% | |
| ACTTGTGTAGGCTTGTCACA+GGG | + | chr3.1:81792174-81792193 | MS.gene32865:intron | 45.0% | |
| ATAGCACTTTCTGCTCCATG+GGG | + | chr3.1:81792482-81792501 | MS.gene32865:CDS | 45.0% | |
| CTCATGCTCAACTTGGTCTA+AGG | + | chr3.1:81793062-81793081 | MS.gene32865:CDS | 45.0% | |
| CTTTGTATAGTTGCGTGCAG+AGG | + | chr3.1:81791517-81791536 | MS.gene32865:intron | 45.0% | |
| GAAAATCGATGCACCAGAAG+TGG | + | chr3.1:81792772-81792791 | MS.gene32865:CDS | 45.0% | |
| GAGGAAGTAGAACCAAAGCT+AGG | - | chr3.1:81790954-81790973 | None:intergenic | 45.0% | |
| GCTTGTGCTAATGGCAACAT+TGG | - | chr3.1:81790664-81790683 | None:intergenic | 45.0% | |
| GGTTTCGATTAAGGAGTTCG+AGG | - | chr3.1:81792427-81792446 | None:intergenic | 45.0% | |
| TACTTGTGTAGGCTTGTCAC+AGG | + | chr3.1:81792173-81792192 | MS.gene32865:intron | 45.0% | |
| TGCATCAGGCAATACTTTGG+GGG | + | chr3.1:81792532-81792551 | MS.gene32865:CDS | 45.0% | |
| TGTGAACATGGTGAGCTTGT+TGG | + | chr3.1:81792904-81792923 | MS.gene32865:CDS | 45.0% | |
| ! | GCTCATGATGGAAAGTTTGG+TGG | - | chr3.1:81791214-81791233 | None:intergenic | 45.0% |
| !! | GCAAGAGCGTTTGAATGAGA+TGG | + | chr3.1:81791381-81791400 | MS.gene32865:intron | 45.0% |
| !! | GTTCTCATGGCGGACAAAAT+AGG | + | chr3.1:81792078-81792097 | MS.gene32865:intron | 45.0% |
| !! | TATTACTGGCTTCCCTCCAT+TGG | - | chr3.1:81792372-81792391 | None:intergenic | 45.0% |
| !!! | TTTTTTCTTTGGTGGTGGCC+GGG | - | chr3.1:81791949-81791968 | None:intergenic | 45.0% |
| CTCATGGCTAGATTCGAACC+AGG | - | chr3.1:81791437-81791456 | None:intergenic | 50.0% | |
| GAGAACTTTGCCACCCATTG+CGG | + | chr3.1:81791477-81791496 | MS.gene32865:intron | 50.0% | |
| TAGGCTTGTCACAGGGTACA+TGG | + | chr3.1:81792181-81792200 | MS.gene32865:intron | 50.0% | |
| TCATCAACAGTTCCACCCCA+TGG | - | chr3.1:81792500-81792519 | None:intergenic | 50.0% | |
| ! | AAAGGGTGTGAAGACTCCAG+AGG | + | chr3.1:81792814-81792833 | MS.gene32865:CDS | 50.0% |
| ! | AGTTGGTTCCCTCCATTACC+TGG | - | chr3.1:81790717-81790736 | None:intergenic | 50.0% |
| !! | TGGTGACGGAACTGTGAACA+TGG | + | chr3.1:81792892-81792911 | MS.gene32865:CDS | 50.0% |
| !!! | GAGCCCCCGGAGTTTTTTTA+TGG | + | chr3.1:81792866-81792885 | MS.gene32865:CDS | 50.0% |
| !!! | TTTTTCTTTGGTGGTGGCCG+GGG | - | chr3.1:81791948-81791967 | None:intergenic | 50.0% |
| AATCCCTCGAAGGACCGCAA+TGG | - | chr3.1:81791494-81791513 | None:intergenic | 55.0% | |
| AGTTGCGTGCAGAGGATACC+CGG | + | chr3.1:81791525-81791544 | MS.gene32865:intron | 55.0% | |
| ATCCCTCGAAGGACCGCAAT+GGG | - | chr3.1:81791493-81791512 | None:intergenic | 55.0% | |
| CCAACTTGAGATGGGTGACC+TGG | - | chr3.1:81792299-81792318 | None:intergenic | 55.0% | |
| CCAGGTCACCCATCTCAAGT+TGG | + | chr3.1:81792296-81792315 | MS.gene32865:CDS | 55.0% | |
| CGATATGGTCTAGCTGCACC+AGG | + | chr3.1:81792278-81792297 | MS.gene32865:CDS | 55.0% | |
| CTTGTCTCACACAGCTTGGG+AGG | + | chr3.1:81792392-81792411 | MS.gene32865:CDS | 55.0% | |
| GAGACACGTGTCCCTAGCTT+TGG | + | chr3.1:81790939-81790958 | MS.gene32865:CDS | 55.0% | |
| TGAGCCTAGCTCAGTTGGCA+GGG | + | chr3.1:81791894-81791913 | MS.gene32865:intron | 55.0% | |
| !! | TGGCGATTTTGATGAGCCCC+CGG | + | chr3.1:81792853-81792872 | MS.gene32865:CDS | 55.0% |
| CACCCATTGCGGTCCTTCGA+GGG | + | chr3.1:81791488-81791507 | MS.gene32865:intron | 60.0% | |
| CCAACTGAGCTAGGCTCACG+AGG | - | chr3.1:81791892-81791911 | None:intergenic | 60.0% | |
| CCTCGTGAGCCTAGCTCAGT+TGG | + | chr3.1:81791889-81791908 | MS.gene32865:intron | 60.0% | |
| CTGTCCCTGCCAACTGAGCT+AGG | - | chr3.1:81791901-81791920 | None:intergenic | 60.0% | |
| GCACTTTCTGCTCCATGGGG+TGG | + | chr3.1:81792485-81792504 | MS.gene32865:CDS | 60.0% | |
| GTGAGCCTAGCTCAGTTGGC+AGG | + | chr3.1:81791893-81791912 | MS.gene32865:intron | 60.0% | |
| CCACCCATTGCGGTCCTTCG+AGG | + | chr3.1:81791487-81791506 | MS.gene32865:intron | 65.0% | |
| CCTCGAAGGACCGCAATGGG+TGG | - | chr3.1:81791490-81791509 | None:intergenic | 65.0% | |
| GGGACACGTGTCTCCACTCC+AGG | - | chr3.1:81790933-81790952 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 81790639 | 81793117 | 81790639 | ID=MS.gene32865 |
| chr3.1 | mRNA | 81790639 | 81793117 | 81790639 | ID=MS.gene32865.t1;Parent=MS.gene32865 |
| chr3.1 | exon | 81790639 | 81791000 | 81790639 | ID=MS.gene32865.t1.exon1;Parent=MS.gene32865.t1 |
| chr3.1 | CDS | 81790639 | 81791000 | 81790639 | ID=cds.MS.gene32865.t1;Parent=MS.gene32865.t1 |
| chr3.1 | exon | 81792184 | 81793117 | 81792184 | ID=MS.gene32865.t1.exon2;Parent=MS.gene32865.t1 |
| chr3.1 | CDS | 81792184 | 81793117 | 81792184 | ID=cds.MS.gene32865.t1;Parent=MS.gene32865.t1 |
| Gene Sequence |
| Protein sequence |
