Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32920.t1 | XP_003603091.1 | 88.1 | 353 | 36 | 3 | 1 | 352 | 1 | 348 | 2.70E-169 | 604.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32920.t1 | Q9FGQ7 | 47.2 | 316 | 154 | 5 | 11 | 324 | 17 | 321 | 9.8e-72 | 271.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32920.t1 | G7J6Z8 | 88.1 | 353 | 36 | 3 | 1 | 352 | 1 | 348 | 1.9e-169 | 604.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049328 | MS.gene32920 | 0.806345 | 8.61E-50 | -1.69E-46 |
| MS.gene049418 | MS.gene32920 | 0.872651 | 2.70E-67 | -1.69E-46 |
| MS.gene049622 | MS.gene32920 | 0.802562 | 5.29E-49 | -1.69E-46 |
| MS.gene049660 | MS.gene32920 | 0.824623 | 7.30E-54 | -1.69E-46 |
| MS.gene049697 | MS.gene32920 | 0.816524 | 5.29E-52 | -1.69E-46 |
| MS.gene049989 | MS.gene32920 | 0.859143 | 5.07E-63 | -1.69E-46 |
| MS.gene050297 | MS.gene32920 | 0.860297 | 2.28E-63 | -1.69E-46 |
| MS.gene050310 | MS.gene32920 | 0.841659 | 4.16E-58 | -1.69E-46 |
| MS.gene05054 | MS.gene32920 | 0.811871 | 5.64E-51 | -1.69E-46 |
| MS.gene050648 | MS.gene32920 | 0.813794 | 2.14E-51 | -1.69E-46 |
| MS.gene051067 | MS.gene32920 | 0.82349 | 1.35E-53 | -1.69E-46 |
| MS.gene051094 | MS.gene32920 | 0.821958 | 3.06E-53 | -1.69E-46 |
| MS.gene051263 | MS.gene32920 | 0.881189 | 2.95E-70 | -1.69E-46 |
| MS.gene051478 | MS.gene32920 | 0.839855 | 1.23E-57 | -1.69E-46 |
| MS.gene051629 | MS.gene32920 | 0.814465 | 1.52E-51 | -1.69E-46 |
| MS.gene051648 | MS.gene32920 | 0.831724 | 1.42E-55 | -1.69E-46 |
| MS.gene052150 | MS.gene32920 | 0.803454 | 3.46E-49 | -1.69E-46 |
| MS.gene052151 | MS.gene32920 | 0.805416 | 1.35E-49 | -1.69E-46 |
| MS.gene052367 | MS.gene32920 | 0.817877 | 2.63E-52 | -1.69E-46 |
| MS.gene053416 | MS.gene32920 | 0.810779 | 9.73E-51 | -1.69E-46 |
| MS.gene053417 | MS.gene32920 | 0.810155 | 1.33E-50 | -1.69E-46 |
| MS.gene055884 | MS.gene32920 | 0.803981 | 2.69E-49 | -1.69E-46 |
| MS.gene055957 | MS.gene32920 | 0.815499 | 8.96E-52 | -1.69E-46 |
| MS.gene056041 | MS.gene32920 | 0.810664 | 1.03E-50 | -1.69E-46 |
| MS.gene056042 | MS.gene32920 | 0.813305 | 2.74E-51 | -1.69E-46 |
| MS.gene056169 | MS.gene32920 | 0.838994 | 2.07E-57 | -1.69E-46 |
| MS.gene056228 | MS.gene32920 | 0.829102 | 6.21E-55 | -1.69E-46 |
| MS.gene056520 | MS.gene32920 | 0.825871 | 3.70E-54 | -1.69E-46 |
| MS.gene056526 | MS.gene32920 | 0.807993 | 3.85E-50 | -1.69E-46 |
| MS.gene058196 | MS.gene32920 | 0.845228 | 4.63E-59 | -1.69E-46 |
| MS.gene058197 | MS.gene32920 | 0.870363 | 1.54E-66 | -1.69E-46 |
| MS.gene058198 | MS.gene32920 | 0.863273 | 2.80E-64 | -1.69E-46 |
| MS.gene059300 | MS.gene32920 | 0.864765 | 9.61E-65 | -1.69E-46 |
| MS.gene060473 | MS.gene32920 | 0.829389 | 5.29E-55 | -1.69E-46 |
| MS.gene060565 | MS.gene32920 | 0.845093 | 5.03E-59 | -1.69E-46 |
| MS.gene06057 | MS.gene32920 | 0.857321 | 1.77E-62 | -1.69E-46 |
| MS.gene061260 | MS.gene32920 | 0.807179 | 5.74E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32920.t1 | MTR_3g102310 | 94.901 | 353 | 12 | 3 | 1 | 352 | 1 | 348 | 0.0 | 662 |
| MS.gene32920.t1 | MTR_4g094942 | 53.892 | 334 | 141 | 6 | 23 | 348 | 12 | 340 | 1.65e-111 | 329 |
| MS.gene32920.t1 | MTR_1g107535 | 57.096 | 303 | 118 | 6 | 53 | 348 | 66 | 363 | 1.22e-110 | 328 |
| MS.gene32920.t1 | MTR_5g032550 | 34.528 | 307 | 170 | 8 | 33 | 323 | 37 | 328 | 4.12e-46 | 160 |
| MS.gene32920.t1 | MTR_5g032550 | 37.615 | 218 | 126 | 3 | 33 | 246 | 37 | 248 | 2.35e-43 | 151 |
| MS.gene32920.t1 | MTR_4g080990 | 36.626 | 243 | 135 | 8 | 88 | 321 | 91 | 323 | 2.86e-43 | 153 |
| MS.gene32920.t1 | MTR_5g035360 | 43.137 | 204 | 103 | 3 | 88 | 285 | 76 | 272 | 1.40e-41 | 148 |
| MS.gene32920.t1 | MTR_3g100710 | 44.578 | 166 | 92 | 0 | 88 | 253 | 96 | 261 | 2.45e-40 | 145 |
| MS.gene32920.t1 | MTR_8g063120 | 38.498 | 213 | 118 | 3 | 87 | 293 | 92 | 297 | 1.91e-37 | 138 |
| MS.gene32920.t1 | MTR_8g063120 | 46.053 | 152 | 81 | 1 | 87 | 238 | 92 | 242 | 2.59e-37 | 135 |
| MS.gene32920.t1 | MTR_5g065830 | 32.323 | 297 | 193 | 5 | 60 | 349 | 55 | 350 | 9.60e-36 | 133 |
| MS.gene32920.t1 | MTR_8g068950 | 33.210 | 271 | 166 | 8 | 89 | 351 | 108 | 371 | 9.96e-32 | 123 |
| MS.gene32920.t1 | MTR_5g015670 | 36.364 | 187 | 110 | 4 | 85 | 269 | 99 | 278 | 1.73e-30 | 119 |
| MS.gene32920.t1 | MTR_2g011500 | 33.495 | 206 | 124 | 5 | 91 | 293 | 86 | 281 | 2.70e-28 | 112 |
| MS.gene32920.t1 | MTR_3g103080 | 46.154 | 130 | 65 | 2 | 80 | 205 | 54 | 182 | 2.92e-27 | 109 |
| MS.gene32920.t1 | MTR_3g100710 | 38.562 | 153 | 82 | 2 | 113 | 253 | 80 | 232 | 1.75e-24 | 102 |
| MS.gene32920.t1 | MTR_2g089490 | 31.140 | 228 | 137 | 8 | 66 | 282 | 26 | 244 | 1.17e-22 | 96.7 |
| MS.gene32920.t1 | MTR_2g089490 | 32.447 | 188 | 117 | 5 | 66 | 247 | 26 | 209 | 3.91e-21 | 92.4 |
| MS.gene32920.t1 | MTR_4g095790 | 27.778 | 252 | 156 | 8 | 89 | 335 | 68 | 298 | 2.20e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32920.t1 | AT5G67260 | 47.826 | 345 | 160 | 9 | 11 | 348 | 17 | 348 | 2.59e-92 | 280 |
| MS.gene32920.t1 | AT5G67260 | 47.826 | 345 | 160 | 9 | 11 | 348 | 17 | 348 | 7.92e-92 | 280 |
| MS.gene32920.t1 | AT4G34160 | 51.812 | 276 | 123 | 4 | 10 | 285 | 17 | 282 | 1.49e-91 | 279 |
| MS.gene32920.t1 | AT3G50070 | 46.452 | 310 | 138 | 7 | 8 | 310 | 13 | 301 | 9.48e-84 | 258 |
| MS.gene32920.t1 | AT1G70210 | 40.086 | 232 | 130 | 5 | 58 | 282 | 47 | 276 | 2.22e-46 | 161 |
| MS.gene32920.t1 | AT2G22490 | 38.197 | 233 | 135 | 4 | 87 | 314 | 95 | 323 | 8.39e-44 | 155 |
| MS.gene32920.t1 | AT2G22490 | 38.197 | 233 | 136 | 3 | 87 | 314 | 95 | 324 | 6.56e-43 | 152 |
| MS.gene32920.t1 | AT5G65420 | 41.317 | 167 | 92 | 2 | 85 | 248 | 74 | 237 | 6.45e-34 | 126 |
| MS.gene32920.t1 | AT5G65420 | 34.322 | 236 | 135 | 5 | 85 | 317 | 74 | 292 | 7.76e-34 | 127 |
| MS.gene32920.t1 | AT5G65420 | 40.523 | 153 | 90 | 1 | 85 | 236 | 74 | 226 | 4.22e-33 | 123 |
| MS.gene32920.t1 | AT5G65420 | 32.927 | 246 | 135 | 6 | 85 | 317 | 74 | 302 | 8.27e-32 | 122 |
| MS.gene32920.t1 | AT5G10440 | 36.735 | 196 | 114 | 5 | 60 | 248 | 36 | 228 | 3.55e-28 | 112 |
| MS.gene32920.t1 | AT5G10440 | 35.294 | 187 | 116 | 4 | 60 | 241 | 36 | 222 | 5.40e-28 | 109 |
| MS.gene32920.t1 | AT4G03270 | 30.233 | 258 | 161 | 6 | 79 | 331 | 48 | 291 | 9.83e-23 | 97.1 |
| MS.gene32920.t1 | AT4G03270 | 30.233 | 258 | 160 | 7 | 79 | 331 | 48 | 290 | 3.07e-21 | 92.8 |
| MS.gene32920.t1 | AT4G37630 | 38.136 | 118 | 72 | 1 | 92 | 209 | 75 | 191 | 1.62e-20 | 90.1 |
| MS.gene32920.t1 | AT4G37630 | 39.669 | 121 | 68 | 3 | 92 | 209 | 75 | 193 | 1.98e-20 | 90.1 |
| MS.gene32920.t1 | AT4G37630 | 39.669 | 121 | 68 | 3 | 92 | 209 | 75 | 193 | 4.55e-20 | 90.1 |
| MS.gene32920.t1 | AT5G02110 | 32.099 | 162 | 105 | 3 | 85 | 245 | 74 | 231 | 3.34e-17 | 82.0 |
| MS.gene32920.t1 | AT5G02110 | 35.200 | 125 | 76 | 3 | 122 | 245 | 82 | 202 | 3.49e-13 | 69.7 |
Find 57 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCAGCTTCTTGGTATTCT+TGG | 0.183134 | 3.1:+81264065 | MS.gene32920:CDS |
| GTTTATTGTTGTGTTGTTTA+AGG | 0.198020 | 3.1:-81263211 | None:intergenic |
| GACATTTCCATTACACCTTT+TGG | 0.225762 | 3.1:-81264310 | None:intergenic |
| TCTTTCTCTTGCTGCTAAAA+TGG | 0.227658 | 3.1:+81263521 | MS.gene32920:CDS |
| CTATAACCCAATGTTACTTT+TGG | 0.238967 | 3.1:+81263113 | MS.gene32920:CDS |
| TGTTAGAAACCGACATGTTT+TGG | 0.243497 | 3.1:+81263250 | MS.gene32920:CDS |
| CAATGCAACAAACGCAAGTT+TGG | 0.256632 | 3.1:+81264271 | MS.gene32920:CDS |
| TCTTGAAACCAACCCTGTTT+TGG | 0.259066 | 3.1:+81263332 | MS.gene32920:CDS |
| CTTCGAGCAGTTTCCAAAAC+AGG | 0.289915 | 3.1:-81263345 | None:intergenic |
| GTCTTGAGTTCTGATCTTCT+TGG | 0.314712 | 3.1:-81264410 | None:intergenic |
| GAGTTATCTACCTTCTGTTT+TGG | 0.348297 | 3.1:+81263980 | MS.gene32920:CDS |
| GAATATCAAATCCAGCTTCT+TGG | 0.360410 | 3.1:+81264056 | MS.gene32920:CDS |
| ATGAAGAATTTAATAGAAAC+TGG | 0.368473 | 3.1:-81264432 | None:intergenic |
| TTGCTGTCAACTATCTTGAT+AGG | 0.370220 | 3.1:+81263433 | MS.gene32920:CDS |
| CTTCTCTCTGTCATTAGATC+AGG | 0.392447 | 3.1:+81263849 | MS.gene32920:CDS |
| ATAAAAGAAAGAGGTGTTGC+TGG | 0.406180 | 3.1:-81263753 | None:intergenic |
| GATTGAAAGATCATCTTTGT+TGG | 0.408339 | 3.1:+81263799 | MS.gene32920:CDS |
| GTGATAATTCCAATGATTCA+TGG | 0.412862 | 3.1:+81264341 | MS.gene32920:CDS |
| AACAGCGTGGAGCCTAGTTT+AGG | 0.414590 | 3.1:+81264029 | MS.gene32920:CDS |
| ATTGAAAGATCATCTTTGTT+GGG | 0.438979 | 3.1:+81263800 | MS.gene32920:CDS |
| AATGCAACAAACGCAAGTTT+GGG | 0.445846 | 3.1:+81264272 | MS.gene32920:CDS |
| AGAAGCTGATGTTGAAACTA+TGG | 0.448803 | 3.1:+81264227 | MS.gene32920:CDS |
| ATCTTCTTGGACAAAGGCTC+TGG | 0.449002 | 3.1:-81264397 | None:intergenic |
| GTTTCAAGAAAGATGTAAAG+TGG | 0.463002 | 3.1:-81263318 | None:intergenic |
| ATGGCTTCTCATTCTGAAAA+CGG | 0.471458 | 3.1:-81263470 | None:intergenic |
| AAGTAGTCCAAAAGGTGTAA+TGG | 0.473331 | 3.1:+81264303 | MS.gene32920:CDS |
| CTCGAAGAGAATCTATTGAA+TGG | 0.475440 | 3.1:+81263361 | MS.gene32920:CDS |
| TGATATTCATCTCCTAAACT+AGG | 0.476214 | 3.1:-81264041 | None:intergenic |
| TTCCAAGAATACCAAGAAGC+TGG | 0.476633 | 3.1:-81264067 | None:intergenic |
| AACGTATCCAAAAGTAACAT+TGG | 0.480126 | 3.1:-81263120 | None:intergenic |
| ACTTGAAGATCTAGCAAAAG+AGG | 0.483959 | 3.1:-81263558 | None:intergenic |
| CTGATGTTGAAACTATGGTC+AGG | 0.487634 | 3.1:+81264232 | MS.gene32920:CDS |
| TGCTACAGCCCATGAATCAT+TGG | 0.497238 | 3.1:-81264350 | None:intergenic |
| TTTCAAGAAAGATGTAAAGT+GGG | 0.508769 | 3.1:-81263317 | None:intergenic |
| ACGTATCCAAAAGTAACATT+GGG | 0.515111 | 3.1:-81263119 | None:intergenic |
| GTTCTGATCTTCTTGGACAA+AGG | 0.519437 | 3.1:-81264403 | None:intergenic |
| GTACTGTTCAGAAGAACATT+GGG | 0.522194 | 3.1:+81263143 | MS.gene32920:CDS |
| ACAAAATCAATAAAAGAAAG+AGG | 0.523440 | 3.1:-81263762 | None:intergenic |
| TCAATTCCAAGTAGTCCAAA+AGG | 0.525691 | 3.1:+81264295 | MS.gene32920:CDS |
| TGTACTGTTCAGAAGAACAT+TGG | 0.536203 | 3.1:+81263142 | MS.gene32920:CDS |
| TGATACTTTCAACTCTTGGA+TGG | 0.538072 | 3.1:+81263721 | MS.gene32920:CDS |
| AGCAGTTTCCAAAACAGGGT+TGG | 0.546697 | 3.1:-81263340 | None:intergenic |
| GAGTTTCTTAAGAGATGTGA+AGG | 0.552834 | 3.1:+81263822 | MS.gene32920:CDS |
| TTCGAGCAGTTTCCAAAACA+GGG | 0.563113 | 3.1:-81263344 | None:intergenic |
| TGATAATTCCAATGATTCAT+GGG | 0.572255 | 3.1:+81264342 | MS.gene32920:CDS |
| ATCTAGCAAAAGAGGAACAT+GGG | 0.578857 | 3.1:-81263550 | None:intergenic |
| CTATGGTCAGGGTATGAAGA+GGG | 0.582499 | 3.1:+81264244 | MS.gene32920:CDS |
| GATCTAGCAAAAGAGGAACA+TGG | 0.582627 | 3.1:-81263551 | None:intergenic |
| GTAGCAGTTGCCAAAACAGA+AGG | 0.597534 | 3.1:-81263990 | None:intergenic |
| GCTGCAAGCTGAGTCATCCA+TGG | 0.601969 | 3.1:-81263489 | None:intergenic |
| TTCTAACAAAGAACAAGTAG+TGG | 0.615213 | 3.1:-81263235 | None:intergenic |
| TGATGTTGAAACTATGGTCA+GGG | 0.619871 | 3.1:+81264233 | MS.gene32920:CDS |
| TTCATCGTCCCAAAACATGT+CGG | 0.630209 | 3.1:-81263259 | None:intergenic |
| CTGTTCAGAAGAACATTGGG+AGG | 0.651953 | 3.1:+81263146 | MS.gene32920:CDS |
| ACTATGGTCAGGGTATGAAG+AGG | 0.670130 | 3.1:+81264243 | MS.gene32920:CDS |
| TATGGTCAGGGTATGAAGAG+GGG | 0.674081 | 3.1:+81264245 | MS.gene32920:CDS |
| GGAATGGTTACAGGACAAGG+TGG | 0.758876 | 3.1:+81264195 | MS.gene32920:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAATATTAATGTGGAA+TGG | + | chr3.1:81264179-81264198 | MS.gene32920:intron | 15.0% |
| !!! | TTGTTTTTGAATTTTTGTTT+AGG | + | chr3.1:81263644-81263663 | MS.gene32920:intron | 15.0% |
| !! | ACAAAATCAATAAAAGAAAG+AGG | - | chr3.1:81263765-81263784 | None:intergenic | 20.0% |
| !! | ATGAAGAATTTAATAGAAAC+TGG | - | chr3.1:81264435-81264454 | None:intergenic | 20.0% |
| ! | AGCAAAGACAATTAAAAAGA+TGG | + | chr3.1:81263692-81263711 | MS.gene32920:CDS | 25.0% |
| ! | ATTGAAAGATCATCTTTGTT+GGG | + | chr3.1:81263800-81263819 | MS.gene32920:CDS | 25.0% |
| ! | TGATAATTCCAATGATTCAT+GGG | + | chr3.1:81264342-81264361 | MS.gene32920:CDS | 25.0% |
| ! | TTTCAAGAAAGATGTAAAGT+GGG | - | chr3.1:81263320-81263339 | None:intergenic | 25.0% |
| !!! | ATTTTGATACTTTCAACTCT+TGG | + | chr3.1:81263717-81263736 | MS.gene32920:CDS | 25.0% |
| !!! | GTTTATTGTTGTGTTGTTTA+AGG | - | chr3.1:81263214-81263233 | None:intergenic | 25.0% |
| AACGTATCCAAAAGTAACAT+TGG | - | chr3.1:81263123-81263142 | None:intergenic | 30.0% | |
| ACGTATCCAAAAGTAACATT+GGG | - | chr3.1:81263122-81263141 | None:intergenic | 30.0% | |
| GATTGAAAGATCATCTTTGT+TGG | + | chr3.1:81263799-81263818 | MS.gene32920:CDS | 30.0% | |
| GTGATAATTCCAATGATTCA+TGG | + | chr3.1:81264341-81264360 | MS.gene32920:CDS | 30.0% | |
| GTTTCAAGAAAGATGTAAAG+TGG | - | chr3.1:81263321-81263340 | None:intergenic | 30.0% | |
| TATTAATGTGGAATGGTTAC+AGG | + | chr3.1:81264186-81264205 | MS.gene32920:intron | 30.0% | |
| TGATATTCATCTCCTAAACT+AGG | - | chr3.1:81264044-81264063 | None:intergenic | 30.0% | |
| TTCTAACAAAGAACAAGTAG+TGG | - | chr3.1:81263238-81263257 | None:intergenic | 30.0% | |
| ! | GATTTTGTCATAAGAAGACT+TGG | + | chr3.1:81263777-81263796 | MS.gene32920:CDS | 30.0% |
| !! | TTTTGTTTCTTTCAAGAGCT+AGG | - | chr3.1:81263593-81263612 | None:intergenic | 30.0% |
| !!! | CTATAACCCAATGTTACTTT+TGG | + | chr3.1:81263113-81263132 | MS.gene32920:CDS | 30.0% |
| AATGCAACAAACGCAAGTTT+GGG | + | chr3.1:81264272-81264291 | MS.gene32920:CDS | 35.0% | |
| ACTTGAAGATCTAGCAAAAG+AGG | - | chr3.1:81263561-81263580 | None:intergenic | 35.0% | |
| AGAAGCTGATGTTGAAACTA+TGG | + | chr3.1:81264227-81264246 | MS.gene32920:CDS | 35.0% | |
| ATCTAGCAAAAGAGGAACAT+GGG | - | chr3.1:81263553-81263572 | None:intergenic | 35.0% | |
| CTCGAAGAGAATCTATTGAA+TGG | + | chr3.1:81263361-81263380 | MS.gene32920:CDS | 35.0% | |
| GAATATCAAATCCAGCTTCT+TGG | + | chr3.1:81264056-81264075 | MS.gene32920:CDS | 35.0% | |
| GAGTTTCTTAAGAGATGTGA+AGG | + | chr3.1:81263822-81263841 | MS.gene32920:CDS | 35.0% | |
| GTACTGTTCAGAAGAACATT+GGG | + | chr3.1:81263143-81263162 | MS.gene32920:CDS | 35.0% | |
| TCAATTCCAAGTAGTCCAAA+AGG | + | chr3.1:81264295-81264314 | MS.gene32920:CDS | 35.0% | |
| TCTTTCTCTTGCTGCTAAAA+TGG | + | chr3.1:81263521-81263540 | MS.gene32920:CDS | 35.0% | |
| TGATACTTTCAACTCTTGGA+TGG | + | chr3.1:81263721-81263740 | MS.gene32920:CDS | 35.0% | |
| TGATGTTGAAACTATGGTCA+GGG | + | chr3.1:81264233-81264252 | MS.gene32920:CDS | 35.0% | |
| TGTACTGTTCAGAAGAACAT+TGG | + | chr3.1:81263142-81263161 | MS.gene32920:CDS | 35.0% | |
| TTGCTGTCAACTATCTTGAT+AGG | + | chr3.1:81263433-81263452 | MS.gene32920:CDS | 35.0% | |
| ! | AAGTAGTCCAAAAGGTGTAA+TGG | + | chr3.1:81264303-81264322 | MS.gene32920:CDS | 35.0% |
| ! | ATGGCTTCTCATTCTGAAAA+CGG | - | chr3.1:81263473-81263492 | None:intergenic | 35.0% |
| ! | ATTACACCTTTTGGACTACT+TGG | - | chr3.1:81264304-81264323 | None:intergenic | 35.0% |
| ! | GACATTTCCATTACACCTTT+TGG | - | chr3.1:81264313-81264332 | None:intergenic | 35.0% |
| ! | GAGTTATCTACCTTCTGTTT+TGG | + | chr3.1:81263980-81263999 | MS.gene32920:CDS | 35.0% |
| ! | GTTAGAAACCGACATGTTTT+GGG | + | chr3.1:81263251-81263270 | MS.gene32920:CDS | 35.0% |
| ! | TGTTAGAAACCGACATGTTT+TGG | + | chr3.1:81263250-81263269 | MS.gene32920:CDS | 35.0% |
| !! | ATAAAAGAAAGAGGTGTTGC+TGG | - | chr3.1:81263756-81263775 | None:intergenic | 35.0% |
| ATCCAGCTTCTTGGTATTCT+TGG | + | chr3.1:81264065-81264084 | MS.gene32920:CDS | 40.0% | |
| CAATGCAACAAACGCAAGTT+TGG | + | chr3.1:81264271-81264290 | MS.gene32920:CDS | 40.0% | |
| CTGATGTTGAAACTATGGTC+AGG | + | chr3.1:81264232-81264251 | MS.gene32920:CDS | 40.0% | |
| CTTCTCTCTGTCATTAGATC+AGG | + | chr3.1:81263849-81263868 | MS.gene32920:CDS | 40.0% | |
| GATCTAGCAAAAGAGGAACA+TGG | - | chr3.1:81263554-81263573 | None:intergenic | 40.0% | |
| GTTCTGATCTTCTTGGACAA+AGG | - | chr3.1:81264406-81264425 | None:intergenic | 40.0% | |
| TTCATCGTCCCAAAACATGT+CGG | - | chr3.1:81263262-81263281 | None:intergenic | 40.0% | |
| TTCCAAGAATACCAAGAAGC+TGG | - | chr3.1:81264070-81264089 | None:intergenic | 40.0% | |
| TTCGAGCAGTTTCCAAAACA+GGG | - | chr3.1:81263347-81263366 | None:intergenic | 40.0% | |
| ! | GTCTTGAGTTCTGATCTTCT+TGG | - | chr3.1:81264413-81264432 | None:intergenic | 40.0% |
| ! | GTTTTCAGAATGAGAAGCCA+TGG | + | chr3.1:81263472-81263491 | MS.gene32920:CDS | 40.0% |
| ! | TCTTGAAACCAACCCTGTTT+TGG | + | chr3.1:81263332-81263351 | MS.gene32920:CDS | 40.0% |
| !!! | TGTTTTGGCAACTGCTACAA+TGG | + | chr3.1:81263995-81264014 | MS.gene32920:CDS | 40.0% |
| ACTATGGTCAGGGTATGAAG+AGG | + | chr3.1:81264243-81264262 | MS.gene32920:CDS | 45.0% | |
| AGCAGTTTCCAAAACAGGGT+TGG | - | chr3.1:81263343-81263362 | None:intergenic | 45.0% | |
| ATCTTCTTGGACAAAGGCTC+TGG | - | chr3.1:81264400-81264419 | None:intergenic | 45.0% | |
| CTATGGTCAGGGTATGAAGA+GGG | + | chr3.1:81264244-81264263 | MS.gene32920:CDS | 45.0% | |
| CTGTTCAGAAGAACATTGGG+AGG | + | chr3.1:81263146-81263165 | MS.gene32920:CDS | 45.0% | |
| CTTCGAGCAGTTTCCAAAAC+AGG | - | chr3.1:81263348-81263367 | None:intergenic | 45.0% | |
| GTAGCAGTTGCCAAAACAGA+AGG | - | chr3.1:81263993-81264012 | None:intergenic | 45.0% | |
| TATGGTCAGGGTATGAAGAG+GGG | + | chr3.1:81264245-81264264 | MS.gene32920:CDS | 45.0% | |
| TGCTACAGCCCATGAATCAT+TGG | - | chr3.1:81264353-81264372 | None:intergenic | 45.0% | |
| TGTGGAATGGTTACAGGACA+AGG | + | chr3.1:81264192-81264211 | MS.gene32920:intron | 45.0% | |
| ! | GGTTCATGTTTTCAACAGCG+TGG | + | chr3.1:81264016-81264035 | MS.gene32920:CDS | 45.0% |
| !! | TATTAATATTAATATTAATG+TGG | + | chr3.1:81264174-81264193 | MS.gene32920:intron | 5.0% |
| AACAGCGTGGAGCCTAGTTT+AGG | + | chr3.1:81264029-81264048 | MS.gene32920:CDS | 50.0% | |
| GGAATGGTTACAGGACAAGG+TGG | + | chr3.1:81264195-81264214 | MS.gene32920:intron | 50.0% | |
| GCTGCAAGCTGAGTCATCCA+TGG | - | chr3.1:81263492-81263511 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 81263099 | 81264456 | 81263099 | ID=MS.gene32920 |
| chr3.1 | mRNA | 81263099 | 81264456 | 81263099 | ID=MS.gene32920.t1;Parent=MS.gene32920 |
| chr3.1 | exon | 81263099 | 81263578 | 81263099 | ID=MS.gene32920.t1.exon1;Parent=MS.gene32920.t1 |
| chr3.1 | CDS | 81263099 | 81263578 | 81263099 | ID=cds.MS.gene32920.t1;Parent=MS.gene32920.t1 |
| chr3.1 | exon | 81263666 | 81263870 | 81263666 | ID=MS.gene32920.t1.exon2;Parent=MS.gene32920.t1 |
| chr3.1 | CDS | 81263666 | 81263870 | 81263666 | ID=cds.MS.gene32920.t1;Parent=MS.gene32920.t1 |
| chr3.1 | exon | 81263967 | 81264097 | 81263967 | ID=MS.gene32920.t1.exon3;Parent=MS.gene32920.t1 |
| chr3.1 | CDS | 81263967 | 81264097 | 81263967 | ID=cds.MS.gene32920.t1;Parent=MS.gene32920.t1 |
| chr3.1 | exon | 81264208 | 81264456 | 81264208 | ID=MS.gene32920.t1.exon4;Parent=MS.gene32920.t1 |
| chr3.1 | CDS | 81264208 | 81264456 | 81264208 | ID=cds.MS.gene32920.t1;Parent=MS.gene32920.t1 |
| Gene Sequence |
| Protein sequence |
