Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33043.t1 | QDC27833.1 | 100 | 404 | 0 | 0 | 1 | 404 | 1 | 404 | 4.40E-237 | 830.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33043.t1 | Q9FUJ1 | 61.2 | 420 | 147 | 4 | 1 | 404 | 1 | 420 | 5.8e-145 | 515.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33043.t1 | A0A4Y5UJA3 | 100.0 | 404 | 0 | 0 | 1 | 404 | 1 | 404 | 3.2e-237 | 830.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050504 | MS.gene33043 | 0.801061 | 1.08E-48 | -1.69E-46 |
| MS.gene050577 | MS.gene33043 | 0.835161 | 1.97E-56 | -1.69E-46 |
| MS.gene050868 | MS.gene33043 | 0.805838 | 1.10E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene33043 | 0.811314 | 7.45E-51 | -1.69E-46 |
| MS.gene051560 | MS.gene33043 | 0.975437 | 5.96E-140 | -1.69E-46 |
| MS.gene051946 | MS.gene33043 | -0.80271 | 4.93E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene33043 | 0.841512 | 4.54E-58 | -1.69E-46 |
| MS.gene052482 | MS.gene33043 | 0.828711 | 7.73E-55 | -1.69E-46 |
| MS.gene052486 | MS.gene33043 | 0.835426 | 1.69E-56 | -1.69E-46 |
| MS.gene052823 | MS.gene33043 | 0.808807 | 2.58E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene33043 | 0.809 | 2.35E-50 | -1.69E-46 |
| MS.gene053436 | MS.gene33043 | 0.809143 | 2.19E-50 | -1.69E-46 |
| MS.gene053626 | MS.gene33043 | 0.835505 | 1.61E-56 | -1.69E-46 |
| MS.gene054003 | MS.gene33043 | 0.811288 | 7.55E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene33043 | 0.820579 | 6.37E-53 | -1.69E-46 |
| MS.gene055629 | MS.gene33043 | 0.85062 | 1.51E-60 | -1.69E-46 |
| MS.gene056040 | MS.gene33043 | 0.834405 | 3.05E-56 | -1.69E-46 |
| MS.gene056166 | MS.gene33043 | 0.809083 | 2.25E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene33043 | 0.807947 | 3.94E-50 | -1.69E-46 |
| MS.gene05726 | MS.gene33043 | -0.803711 | 3.06E-49 | -1.69E-46 |
| MS.gene05787 | MS.gene33043 | 0.827156 | 1.83E-54 | -1.69E-46 |
| MS.gene058157 | MS.gene33043 | 0.825468 | 4.61E-54 | -1.69E-46 |
| MS.gene058173 | MS.gene33043 | -0.801253 | 9.83E-49 | -1.69E-46 |
| MS.gene058420 | MS.gene33043 | 0.865101 | 7.54E-65 | -1.69E-46 |
| MS.gene059223 | MS.gene33043 | -0.822576 | 2.20E-53 | -1.69E-46 |
| MS.gene059367 | MS.gene33043 | 0.82212 | 2.81E-53 | -1.69E-46 |
| MS.gene059517 | MS.gene33043 | 0.801979 | 6.97E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene33043 | 0.80116 | 1.03E-48 | -1.69E-46 |
| MS.gene06000 | MS.gene33043 | 0.820338 | 7.23E-53 | -1.69E-46 |
| MS.gene060295 | MS.gene33043 | 0.812899 | 3.36E-51 | -1.69E-46 |
| MS.gene060778 | MS.gene33043 | 0.829443 | 5.13E-55 | -1.69E-46 |
| MS.gene06077 | MS.gene33043 | 0.821312 | 4.32E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33043.t1 | MTR_1g015410 | 98.267 | 404 | 7 | 0 | 1 | 404 | 1 | 404 | 0.0 | 824 |
| MS.gene33043.t1 | MTR_7g090920 | 45.844 | 397 | 190 | 9 | 18 | 401 | 49 | 433 | 2.47e-114 | 345 |
| MS.gene33043.t1 | MTR_3g036100 | 46.543 | 376 | 181 | 7 | 37 | 404 | 81 | 444 | 2.34e-113 | 342 |
| MS.gene33043.t1 | MTR_4g044110 | 45.213 | 376 | 187 | 6 | 37 | 404 | 57 | 421 | 4.31e-111 | 336 |
| MS.gene33043.t1 | MTR_3g112350 | 48.257 | 373 | 179 | 9 | 37 | 401 | 57 | 423 | 8.88e-106 | 322 |
| MS.gene33043.t1 | MTR_2g039410 | 43.003 | 393 | 194 | 9 | 36 | 404 | 53 | 439 | 1.95e-100 | 309 |
| MS.gene33043.t1 | MTR_4g126150 | 40.295 | 407 | 211 | 11 | 17 | 404 | 37 | 430 | 7.78e-98 | 302 |
| MS.gene33043.t1 | MTR_4g126160 | 43.194 | 382 | 194 | 12 | 35 | 404 | 52 | 422 | 1.25e-92 | 288 |
| MS.gene33043.t1 | MTR_2g039340 | 39.535 | 430 | 214 | 12 | 1 | 404 | 16 | 425 | 6.17e-90 | 281 |
| MS.gene33043.t1 | MTR_0005s0070 | 46.792 | 265 | 123 | 5 | 50 | 306 | 1 | 255 | 1.11e-79 | 247 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33043.t1 | AT5G21482 | 61.190 | 420 | 147 | 4 | 1 | 404 | 1 | 420 | 2.08e-180 | 513 |
| MS.gene33043.t1 | AT2G41510 | 46.113 | 373 | 187 | 7 | 37 | 404 | 76 | 439 | 2.87e-113 | 338 |
| MS.gene33043.t1 | AT2G41510 | 46.237 | 372 | 186 | 7 | 38 | 404 | 77 | 439 | 7.37e-112 | 339 |
| MS.gene33043.t1 | AT2G41510 | 46.237 | 372 | 186 | 7 | 38 | 404 | 139 | 501 | 3.24e-111 | 340 |
| MS.gene33043.t1 | AT1G75450 | 48.031 | 381 | 183 | 11 | 29 | 401 | 44 | 417 | 7.27e-108 | 328 |
| MS.gene33043.t1 | AT3G63440 | 45.503 | 378 | 187 | 7 | 37 | 405 | 60 | 427 | 9.22e-107 | 325 |
| MS.gene33043.t1 | AT1G75450 | 47.906 | 382 | 183 | 12 | 29 | 401 | 40 | 414 | 3.57e-106 | 323 |
| MS.gene33043.t1 | AT5G56970 | 43.935 | 371 | 199 | 6 | 37 | 404 | 58 | 422 | 6.31e-100 | 304 |
| MS.gene33043.t1 | AT5G56970 | 43.935 | 371 | 199 | 6 | 37 | 404 | 58 | 422 | 2.23e-98 | 303 |
| MS.gene33043.t1 | AT4G29740 | 38.780 | 410 | 226 | 9 | 10 | 404 | 28 | 427 | 2.21e-85 | 266 |
| MS.gene33043.t1 | AT2G19500 | 40.107 | 374 | 208 | 8 | 35 | 404 | 43 | 404 | 2.26e-84 | 266 |
| MS.gene33043.t1 | AT4G29740 | 40.000 | 385 | 209 | 8 | 35 | 404 | 50 | 427 | 9.18e-84 | 265 |
| MS.gene33043.t1 | AT4G29740 | 44.490 | 245 | 122 | 3 | 35 | 266 | 50 | 293 | 3.54e-64 | 210 |
Find 133 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAAACCGGGTTGAAAATT+TGG | 0.149145 | 1.1:+6439787 | None:intergenic |
| TCTTTACTAGCGATGGAATT+AGG | 0.152257 | 1.1:+6440728 | None:intergenic |
| CGCCATGGCTTGGCCGTTGA+TGG | 0.241138 | 1.1:+6440574 | None:intergenic |
| ATAATTTGAATTACCATATC+AGG | 0.263814 | 1.1:+6440158 | None:intergenic |
| ACGTTTCCGGTGGGGCATTA+TGG | 0.267117 | 1.1:-6440469 | MS.gene33043:CDS |
| TTTGCTTCACTTGGTGGTCT+TGG | 0.275872 | 1.1:-6440227 | MS.gene33043:CDS |
| CTTTACTAGCGATGGAATTA+GGG | 0.278545 | 1.1:+6440729 | None:intergenic |
| GTTCCACACGTCGACGTTTC+CGG | 0.291921 | 1.1:-6440482 | MS.gene33043:CDS |
| ATGCTAAAGCCAAAGGTATA+TGG | 0.292797 | 1.1:-6438278 | MS.gene33043:CDS |
| TACCTTGAACACTTCGTTCA+TGG | 0.302711 | 1.1:-6440815 | MS.gene33043:CDS |
| AGCTTGTTGAAGAACGATTC+TGG | 0.307035 | 1.1:+6440181 | None:intergenic |
| ACCACATCGGCGGTGGTGTA+AGG | 0.326905 | 1.1:+6440662 | None:intergenic |
| AACGGCAAACGTAACGGAAT+TGG | 0.333855 | 1.1:-6440312 | MS.gene33043:CDS |
| CGTTTCCGGTGGGGCATTAT+GGG | 0.338199 | 1.1:-6440468 | MS.gene33043:CDS |
| GTTTGTCTTCCTTCTTCAGC+TGG | 0.347023 | 1.1:-6439771 | MS.gene33043:CDS |
| GCGGAGTACGGCGAGGGGAG+TGG | 0.353548 | 1.1:+6440685 | None:intergenic |
| TCCGTTACGTTTGCCGTTTG+AGG | 0.363428 | 1.1:+6440317 | None:intergenic |
| CTTGGTGGTCTTGGTCAGTT+TGG | 0.364537 | 1.1:-6440218 | MS.gene33043:CDS |
| TAATCAAAACCGTCACCTTC+TGG | 0.374704 | 1.1:+6439882 | None:intergenic |
| ACGGAATTGGAAGTTGTTAC+TGG | 0.376042 | 1.1:-6440299 | MS.gene33043:CDS |
| TCTTCAACAAGCTCCTGATA+TGG | 0.379699 | 1.1:-6440171 | MS.gene33043:intron |
| AAAATCAGCAATGTCGGTCT+TGG | 0.394703 | 1.1:+6438221 | None:intergenic |
| CGCCGCCACTGTTAAATTTG+TGG | 0.405726 | 1.1:+6440613 | None:intergenic |
| GTCCTTTCTCCGCCATGGCT+TGG | 0.407600 | 1.1:+6440564 | None:intergenic |
| AAGTGGATAGATTGCTTGGA+GGG | 0.409011 | 1.1:-6438383 | MS.gene33043:CDS |
| ACTTACTTGCTTCGCAATAG+TGG | 0.415161 | 1.1:+6438138 | None:intergenic |
| AGGTCGTGGACGGATTATCT+TGG | 0.416052 | 1.1:-6440401 | MS.gene33043:CDS |
| AGAGATGAAACGTCGTCGTT+TGG | 0.424313 | 1.1:+6440773 | None:intergenic |
| TTCCATGAACGAAGTGTTCA+AGG | 0.426707 | 1.1:+6440813 | None:intergenic |
| TTGGAAGTTGTTACTGGTAA+AGG | 0.428929 | 1.1:-6440293 | MS.gene33043:CDS |
| TCTTCCTTCTTCAGCTGGAC+CGG | 0.429397 | 1.1:-6439766 | MS.gene33043:CDS |
| GGTGATTTACTCGGAATTTG+AGG | 0.430629 | 1.1:-6439940 | MS.gene33043:CDS |
| CGATGGAATTAGGGGCGAAA+TGG | 0.432931 | 1.1:+6440738 | None:intergenic |
| AGGTGCATCCCATATACCTT+TGG | 0.435349 | 1.1:+6438269 | None:intergenic |
| AGTGGTCAGACTTTCCGTTA+TGG | 0.435886 | 1.1:-6440341 | MS.gene33043:CDS |
| GCTGAAGAAGGAAGACAAAC+CGG | 0.448502 | 1.1:+6439774 | None:intergenic |
| AATTATAGGTGAGGTGGATG+AGG | 0.449429 | 1.1:-6439962 | MS.gene33043:intron |
| TTCGAACCCATCGGAATTGT+GGG | 0.454639 | 1.1:+6439810 | None:intergenic |
| GTTCGAACCCATCGGAATTG+TGG | 0.455887 | 1.1:+6439809 | None:intergenic |
| TAGAAAGTGGATAGATTGCT+TGG | 0.458245 | 1.1:-6438387 | MS.gene33043:CDS |
| TTAAGCTTGTTCCGAGGTCG+TGG | 0.462870 | 1.1:-6440415 | MS.gene33043:CDS |
| TGCTAAAGCCAAAGGTATAT+GGG | 0.464646 | 1.1:-6438277 | MS.gene33043:CDS |
| GGTCGTGGACGGATTATCTT+GGG | 0.467250 | 1.1:-6440400 | MS.gene33043:CDS |
| GGGCGAAATGGAAAGAAGAT+TGG | 0.474103 | 1.1:+6440750 | None:intergenic |
| TACTAAAGATGCAGAGTGGC+TGG | 0.476282 | 1.1:-6439913 | MS.gene33043:CDS |
| GGCCAAGCCATGGCGGAGAA+AGG | 0.478685 | 1.1:-6440566 | MS.gene33043:CDS |
| CAATAGTGGGTACACTAGAA+TGG | 0.480738 | 1.1:+6438152 | None:intergenic |
| ATCCTCAAACATGGGGTTGG+TGG | 0.488134 | 1.1:-6438177 | MS.gene33043:CDS |
| AGCTCTAAGCAATAGAGAAC+CGG | 0.488364 | 1.1:+6439747 | None:intergenic |
| GACCACCAACCCCATGTTTG+AGG | 0.489413 | 1.1:+6438175 | None:intergenic |
| GGAGGGTTGAGATTTGTTGA+GGG | 0.491332 | 1.1:-6438366 | MS.gene33043:CDS |
| GATTATCTTGGGTTGACGGT+GGG | 0.491823 | 1.1:-6440389 | MS.gene33043:CDS |
| TGTTGAGGGAATAAAATTTG+AGG | 0.496430 | 1.1:-6438352 | MS.gene33043:CDS |
| GATGAAACGTCGTCGTTTGG+TGG | 0.497366 | 1.1:+6440776 | None:intergenic |
| AATAGTGGGTACACTAGAAT+GGG | 0.499246 | 1.1:+6438153 | None:intergenic |
| TCCATCGCTAGTAAAGACTT+TGG | 0.502870 | 1.1:-6440722 | MS.gene33043:CDS |
| TCGATCTTCTGAAGTTAATA+CGG | 0.504348 | 1.1:-6439700 | MS.gene33043:intron |
| CCACATCGGCGGTGGTGTAA+GGG | 0.506838 | 1.1:+6440663 | None:intergenic |
| GCCAAAGTCTTTACTAGCGA+TGG | 0.507471 | 1.1:+6440721 | None:intergenic |
| TATCTTGGGTTGACGGTGGG+TGG | 0.508422 | 1.1:-6440386 | MS.gene33043:CDS |
| ACAGTGGCGGCGCGTGGTAA+CGG | 0.517231 | 1.1:-6440602 | MS.gene33043:CDS |
| TTGCCGTTTGAGGACCATAA+CGG | 0.518469 | 1.1:+6440327 | None:intergenic |
| GCTTGTTCCGAGGTCGTGGA+CGG | 0.521292 | 1.1:-6440411 | MS.gene33043:CDS |
| GGTGGTGTAAGGGCGGAGTA+CGG | 0.523423 | 1.1:+6440673 | None:intergenic |
| TCAAGAAAATCCTCAAACAT+GGG | 0.525014 | 1.1:-6438185 | MS.gene33043:CDS |
| GTGATTAATTATAGGTGAGG+TGG | 0.525879 | 1.1:-6439968 | MS.gene33043:intron |
| GACAAGTCCTTTCTCCGCCA+TGG | 0.527704 | 1.1:+6440559 | None:intergenic |
| AACAATGACGACCCTTGTAA+TGG | 0.528629 | 1.1:-6439837 | MS.gene33043:CDS |
| TTTCCGTTATGGTCCTCAAA+CGG | 0.538238 | 1.1:-6440330 | MS.gene33043:CDS |
| TCCTCAAACGGCAAACGTAA+CGG | 0.539282 | 1.1:-6440318 | MS.gene33043:CDS |
| GTAAGGGCGGAGTACGGCGA+GGG | 0.539751 | 1.1:+6440679 | None:intergenic |
| ATTGTGGGCCAACCATTACA+AGG | 0.542464 | 1.1:+6439825 | None:intergenic |
| GACGGATTATCTTGGGTTGA+CGG | 0.542938 | 1.1:-6440393 | MS.gene33043:CDS |
| CGCCACTGTTAAATTTGTGG+TGG | 0.542938 | 1.1:+6440616 | None:intergenic |
| ACGTGTAAAGCGTGTGGAAG+AGG | 0.543242 | 1.1:-6438301 | MS.gene33043:CDS |
| CTCCATCAACGGCCAAGCCA+TGG | 0.544156 | 1.1:-6440576 | MS.gene33043:CDS |
| ATTATAGGTGAGGTGGATGA+GGG | 0.546580 | 1.1:-6439961 | MS.gene33043:intron |
| TGGTTGGCCCACAATTCCGA+TGG | 0.547575 | 1.1:-6439817 | MS.gene33043:CDS |
| CGACATGCGAGCCACGGCGG+AGG | 0.549400 | 1.1:-6440534 | MS.gene33043:CDS |
| CTTACTTGCTTCGCAATAGT+GGG | 0.549432 | 1.1:+6438139 | None:intergenic |
| AGATAATCCGTCCACGACCT+CGG | 0.550163 | 1.1:+6440404 | None:intergenic |
| GAGTACGGCGAGGGGAGTGG+AGG | 0.555436 | 1.1:+6440688 | None:intergenic |
| TGGAGGGTTGAGATTTGTTG+AGG | 0.555521 | 1.1:-6438367 | MS.gene33043:CDS |
| CACACGTCGACGTTTCCGGT+GGG | 0.555761 | 1.1:-6440478 | MS.gene33043:CDS |
| GGATTATCTTGGGTTGACGG+TGG | 0.555995 | 1.1:-6440390 | MS.gene33043:CDS |
| AGAACCGGTCCAGCTGAAGA+AGG | 0.557947 | 1.1:+6439762 | None:intergenic |
| AAAATTTGGTTCGAACCCAT+CGG | 0.558165 | 1.1:+6439801 | None:intergenic |
| CCGCCGTGGCTCGCATGTCG+AGG | 0.560775 | 1.1:+6440537 | None:intergenic |
| CCCTTACACCACCGCCGATG+TGG | 0.562433 | 1.1:-6440663 | MS.gene33043:CDS |
| CTGAAGAAGGAAGACAAACC+GGG | 0.562836 | 1.1:+6439775 | None:intergenic |
| AAAGTGGATAGATTGCTTGG+AGG | 0.565909 | 1.1:-6438384 | MS.gene33043:CDS |
| ATGACGACCCTTGTAATGGT+TGG | 0.566251 | 1.1:-6439833 | MS.gene33043:CDS |
| TCGACGTAGAGAAGTTGAAA+AGG | 0.566784 | 1.1:+6440509 | None:intergenic |
| ATCGCTAGTAAAGACTTTGG+CGG | 0.568106 | 1.1:-6440719 | MS.gene33043:CDS |
| TTTCAACTTCTCTACGTCGA+CGG | 0.568492 | 1.1:-6440506 | MS.gene33043:CDS |
| CCACACGTCGACGTTTCCGG+TGG | 0.571833 | 1.1:-6440479 | MS.gene33043:CDS |
| CACCACAAATTTAACAGTGG+CGG | 0.573395 | 1.1:-6440615 | MS.gene33043:CDS |
| AAAATCCTCAAACATGGGGT+TGG | 0.574467 | 1.1:-6438180 | MS.gene33043:CDS |
| TTCAAGAAAATCCTCAAACA+TGG | 0.574533 | 1.1:-6438186 | MS.gene33043:CDS |
| AATTTAACAGTGGCGGCGCG+TGG | 0.576208 | 1.1:-6440608 | MS.gene33043:CDS |
| ACGATCAAAATCAGCAATGT+CGG | 0.577104 | 1.1:+6438215 | None:intergenic |
| GACACAAACATGTTCAACCA+TGG | 0.577551 | 1.1:+6438243 | None:intergenic |
| TTCTTCCCATAATGCCCCAC+CGG | 0.584444 | 1.1:+6440463 | None:intergenic |
| GTGGATGAGGGTGATTTACT+CGG | 0.585431 | 1.1:-6439949 | MS.gene33043:CDS |
| TTATCTAACGCCGGTGTCAG+TGG | 0.591550 | 1.1:-6440359 | MS.gene33043:CDS |
| CCACCGGAAACGTCGACGTG+TGG | 0.593175 | 1.1:+6440479 | None:intergenic |
| AACATGTTCAACCATGGGTG+AGG | 0.595226 | 1.1:+6438249 | None:intergenic |
| TGAGGATGATGTGAAGTACA+TGG | 0.595819 | 1.1:-6438334 | MS.gene33043:CDS |
| ACACGTCGACGTTTCCGGTG+GGG | 0.596713 | 1.1:-6440477 | MS.gene33043:CDS |
| TATGGGATGCACCTCACCCA+TGG | 0.601998 | 1.1:-6438260 | MS.gene33043:CDS |
| TAAGGGCGGAGTACGGCGAG+GGG | 0.607594 | 1.1:+6440680 | None:intergenic |
| ACACAAACATGTTCAACCAT+GGG | 0.614296 | 1.1:+6438244 | None:intergenic |
| GAAAGTCTGACCACTGACAC+CGG | 0.615663 | 1.1:+6440349 | None:intergenic |
| TGTCCTCGACATGCGAGCCA+CGG | 0.617094 | 1.1:-6440540 | MS.gene33043:CDS |
| GGTAACGGTCACTCCATCAA+CGG | 0.617798 | 1.1:-6440587 | MS.gene33043:CDS |
| TGTAAGGGCGGAGTACGGCG+AGG | 0.621289 | 1.1:+6440678 | None:intergenic |
| GGTTGGCCCACAATTCCGAT+GGG | 0.621310 | 1.1:-6439816 | MS.gene33043:CDS |
| GAAGAGGATGCTAAAGCCAA+AGG | 0.631830 | 1.1:-6438285 | MS.gene33043:CDS |
| TTTGCTACGTGTAAAGCGTG+TGG | 0.637512 | 1.1:-6438307 | MS.gene33043:CDS |
| CAAGAAAATCCTCAAACATG+GGG | 0.637785 | 1.1:-6438184 | MS.gene33043:CDS |
| TTGAAAAGGCTCCTCCGCCG+TGG | 0.646401 | 1.1:+6440523 | None:intergenic |
| CATCGGCGGTGGTGTAAGGG+CGG | 0.651775 | 1.1:+6440666 | None:intergenic |
| TTTACTAGCGATGGAATTAG+GGG | 0.652593 | 1.1:+6440730 | None:intergenic |
| GGTGGAACTTTATCTAACGC+CGG | 0.664301 | 1.1:-6440368 | MS.gene33043:CDS |
| CATCAACGGCCAAGCCATGG+CGG | 0.679836 | 1.1:-6440573 | MS.gene33043:CDS |
| CCTCGACATGCGAGCCACGG+CGG | 0.681570 | 1.1:-6440537 | MS.gene33043:CDS |
| TTACGTGGAAGGGTTCGTTG+TGG | 0.686031 | 1.1:-6439862 | MS.gene33043:CDS |
| TGGCTGGTGACACTACCAGA+AGG | 0.701936 | 1.1:-6439897 | MS.gene33043:CDS |
| ATTAACTTCAGAAGATCGAG+CGG | 0.709501 | 1.1:+6439704 | None:intergenic |
| GTGACACTACCAGAAGGTGA+CGG | 0.718693 | 1.1:-6439891 | MS.gene33043:CDS |
| TTGTGGGCCAACCATTACAA+GGG | 0.722239 | 1.1:+6439826 | None:intergenic |
| AACCACCACAAATTTAACAG+TGG | 0.724117 | 1.1:-6440618 | MS.gene33043:CDS |
| ACTATACTAAAGATGCAGAG+TGG | 0.735948 | 1.1:-6439917 | MS.gene33043:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGATTAAAAAAACAAA+TGG | + | chr1.1:6438588-6438607 | None:intergenic | 10.0% |
| !! | AAAAGATTAAAAAAACAAAT+GGG | + | chr1.1:6438587-6438606 | None:intergenic | 10.0% |
| !! | ATATATCATAAAAGAAAATT+AGG | - | chr1.1:6438772-6438791 | MS.gene33043:intron | 10.0% |
| !! | CTTAACAAAATTAATAAATA+AGG | - | chr1.1:6438810-6438829 | MS.gene33043:intron | 10.0% |
| !!! | TTTTTAATACTTGAAAATTT+AGG | - | chr1.1:6440184-6440203 | MS.gene33043:CDS | 10.0% |
| !! | ATAGAAAATACTATACATAT+AGG | + | chr1.1:6440791-6440810 | None:intergenic | 15.0% |
| !! | ATAGGGAAAAATTTAAAAAT+TGG | + | chr1.1:6440814-6440833 | None:intergenic | 15.0% |
| !! | TATTAAAAATTATGAGACAA+TGG | + | chr1.1:6440173-6440192 | None:intergenic | 15.0% |
| !!! | AAATCTTTGTTATTATTGTA+TGG | - | chr1.1:6438191-6438210 | MS.gene33043:CDS | 15.0% |
| !!! | ATTTTTAACTTCAACTTAAT+TGG | + | chr1.1:6439171-6439190 | None:intergenic | 15.0% |
| !!! | TTGATTTTGATTTTGATTTT+GGG | - | chr1.1:6438234-6438253 | MS.gene33043:CDS | 15.0% |
| !!! | TTTGATTTTGATTTTGATTT+TGG | - | chr1.1:6438233-6438252 | MS.gene33043:CDS | 15.0% |
| !!! | TTTTCTTTTATGATATATTC+AGG | + | chr1.1:6438770-6438789 | None:intergenic | 15.0% |
| !! | AAAAATGAAACCATTATTAG+TGG | - | chr1.1:6439185-6439204 | MS.gene33043:intron | 20.0% |
| !! | ATAATTTGAATTACCATATC+AGG | + | chr1.1:6438070-6438089 | None:intergenic | 20.0% |
| !! | ATTGAATTTGAATTCCTTTA+TGG | - | chr1.1:6439598-6439617 | MS.gene33043:intron | 20.0% |
| !!! | AATTTTATAAATGCGTTAGT+TGG | - | chr1.1:6440299-6440318 | MS.gene33043:CDS | 20.0% |
| !!! | ATATATTTTTTTACCGTGAA+AGG | - | chr1.1:6440254-6440273 | MS.gene33043:CDS | 20.0% |
| !!! | ATTTGAATTTTTTTTGCCAA+TGG | - | chr1.1:6439408-6439427 | MS.gene33043:intron | 20.0% |
| !!! | ATTTTATAAATGCGTTAGTT+GGG | - | chr1.1:6440300-6440319 | MS.gene33043:CDS | 20.0% |
| !!! | GTATATTTGACTTTTTACTT+GGG | + | chr1.1:6439234-6439253 | None:intergenic | 20.0% |
| !!! | TATATTTTTTTACCGTGAAA+GGG | - | chr1.1:6440255-6440274 | MS.gene33043:CDS | 20.0% |
| !!! | TGATTTTGATTTTGATTTTG+GGG | - | chr1.1:6438235-6438254 | MS.gene33043:CDS | 20.0% |
| ! | AAAGGTTAATAAGCCAAAAT+GGG | - | chr1.1:6440654-6440673 | MS.gene33043:CDS | 25.0% |
| ! | AATTCAAGATGAGATAAAGA+AGG | + | chr1.1:6440754-6440773 | None:intergenic | 25.0% |
| ! | ACTAATCAAACATAATATGC+CGG | + | chr1.1:6438967-6438986 | None:intergenic | 25.0% |
| ! | AGTGGTAGAAAAACAAATAT+AGG | - | chr1.1:6439203-6439222 | MS.gene33043:intron | 25.0% |
| ! | CTTTATGGTTAAGGTTAAAA+TGG | - | chr1.1:6439613-6439632 | MS.gene33043:intron | 25.0% |
| ! | GTAGAAAAACAAATATAGGT+GGG | - | chr1.1:6439207-6439226 | MS.gene33043:intron | 25.0% |
| ! | TATCACTATGTTACATAGAA+AGG | - | chr1.1:6440135-6440154 | MS.gene33043:intron | 25.0% |
| ! | TGTCATTGTCTATAAAATGA+AGG | + | chr1.1:6439051-6439070 | None:intergenic | 25.0% |
| ! | TTCTTTATCTCATCTTGAAT+TGG | - | chr1.1:6440753-6440772 | MS.gene33043:CDS | 25.0% |
| ! | TTTGAATTCCTTTATGGTTA+AGG | - | chr1.1:6439604-6439623 | MS.gene33043:intron | 25.0% |
| !! | ATTTTATCATGATTATGACG+AGG | - | chr1.1:6440367-6440386 | MS.gene33043:CDS | 25.0% |
| !! | TGTTTTTCTACCACTAATAA+TGG | + | chr1.1:6439198-6439217 | None:intergenic | 25.0% |
| !! | TTTTATGCTAGTAATAGCTA+AGG | + | chr1.1:6439565-6439584 | None:intergenic | 25.0% |
| !! | TTTTGTCTTGTCTAGTATAT+GGG | - | chr1.1:6438859-6438878 | MS.gene33043:intron | 25.0% |
| !!! | AATTTTTTTTGCCAATGGTT+GGG | - | chr1.1:6439413-6439432 | MS.gene33043:intron | 25.0% |
| !!! | ATTTTGGGGTGATTAATTAT+AGG | - | chr1.1:6438249-6438268 | MS.gene33043:CDS | 25.0% |
| !!! | CATTTTAACCTTAACCATAA+AGG | + | chr1.1:6439615-6439634 | None:intergenic | 25.0% |
| !!! | CGTATATTTGACTTTTTACT+TGG | + | chr1.1:6439235-6439254 | None:intergenic | 25.0% |
| AAGACAAAAGAACACGAAAA+TGG | + | chr1.1:6438848-6438867 | None:intergenic | 30.0% | |
| ACAAAGATTTGACATATGTC+CGG | + | chr1.1:6438181-6438200 | None:intergenic | 30.0% | |
| AGATAACGTCACATATCATT+TGG | - | chr1.1:6439336-6439355 | MS.gene33043:intron | 30.0% | |
| ATCTCAATAATCAGAGCAAT+TGG | + | chr1.1:6439661-6439680 | None:intergenic | 30.0% | |
| ATTCATATACTTTGCAACCA+AGG | + | chr1.1:6440511-6440530 | None:intergenic | 30.0% | |
| CAAGTAAGTTTAAATGAGTC+CGG | - | chr1.1:6438159-6438178 | MS.gene33043:CDS | 30.0% | |
| CATCTTGAATTGGTACTTTA+TGG | - | chr1.1:6440763-6440782 | MS.gene33043:CDS | 30.0% | |
| CCACTTTCTACAATATATCA+AGG | + | chr1.1:6439828-6439847 | None:intergenic | 30.0% | |
| CCTTGATATATTGTAGAAAG+TGG | - | chr1.1:6439825-6439844 | MS.gene33043:CDS | 30.0% | |
| GAAAGGTTAATAAGCCAAAA+TGG | - | chr1.1:6440653-6440672 | MS.gene33043:CDS | 30.0% | |
| GATAACGTCACATATCATTT+GGG | - | chr1.1:6439337-6439356 | MS.gene33043:intron | 30.0% | |
| GGTAGAAAAACAAATATAGG+TGG | - | chr1.1:6439206-6439225 | MS.gene33043:intron | 30.0% | |
| TAATGTGTCAGAAAATCCAA+TGG | + | chr1.1:6439471-6439490 | None:intergenic | 30.0% | |
| TACTAAAAAGCTTGTGTTGT+TGG | - | chr1.1:6439496-6439515 | MS.gene33043:intron | 30.0% | |
| TATCATTTGGGTATAAGTGT+TGG | - | chr1.1:6439349-6439368 | MS.gene33043:intron | 30.0% | |
| TCAAGAAAATCCTCAAACAT+GGG | - | chr1.1:6440040-6440059 | MS.gene33043:intron | 30.0% | |
| TGTTGAGGGAATAAAATTTG+AGG | - | chr1.1:6439873-6439892 | MS.gene33043:CDS | 30.0% | |
| TTCAAGAAAATCCTCAAACA+TGG | - | chr1.1:6440039-6440058 | MS.gene33043:intron | 30.0% | |
| TTCTTTACAATAAACCCGAA+CGG | + | chr1.1:6438638-6438657 | None:intergenic | 30.0% | |
| ! | CTTTTGTCTTGTCTAGTATA+TGG | - | chr1.1:6438858-6438877 | MS.gene33043:intron | 30.0% |
| ! | GTATGGAGTAGTTTATGTTT+TGG | - | chr1.1:6438208-6438227 | MS.gene33043:CDS | 30.0% |
| ! | TAATATTGATTGACCTAGCT+TGG | - | chr1.1:6439105-6439124 | MS.gene33043:intron | 30.0% |
| ! | TCCAAAATTTTACATGACAC+CGG | - | chr1.1:6438945-6438964 | MS.gene33043:intron | 30.0% |
| !! | TCGATCTTCTGAAGTTAATA+CGG | - | chr1.1:6438525-6438544 | MS.gene33043:intron | 30.0% |
| !!! | ATTTTTTTTGCCAATGGTTG+GGG | - | chr1.1:6439414-6439433 | MS.gene33043:intron | 30.0% |
| !!! | GAATTTTTTTTGCCAATGGT+TGG | - | chr1.1:6439412-6439431 | MS.gene33043:intron | 30.0% |
| !!! | TCCAGAAAATGATGGTTTTT+TGG | + | chr1.1:6439721-6439740 | None:intergenic | 30.0% |
| AAAAAAATCATGGCCAAGCT+AGG | + | chr1.1:6439121-6439140 | None:intergenic | 35.0% | |
| AACCACCACAAATTTAACAG+TGG | - | chr1.1:6437607-6437626 | MS.gene33043:intron | 35.0% | |
| ACACAAACATGTTCAACCAT+GGG | + | chr1.1:6439984-6440003 | None:intergenic | 35.0% | |
| ACATGTACGAAGTTGAGATA+TGG | - | chr1.1:6439269-6439288 | MS.gene33043:intron | 35.0% | |
| ACGACACTAACATAGACATA+TGG | + | chr1.1:6439016-6439035 | None:intergenic | 35.0% | |
| ACGATCAAAATCAGCAATGT+CGG | + | chr1.1:6440013-6440032 | None:intergenic | 35.0% | |
| ACTATACTAAAGATGCAGAG+TGG | - | chr1.1:6438308-6438327 | MS.gene33043:CDS | 35.0% | |
| ATTAACTTCAGAAGATCGAG+CGG | + | chr1.1:6438524-6438543 | None:intergenic | 35.0% | |
| CAAGAAAATCCTCAAACATG+GGG | - | chr1.1:6440041-6440060 | MS.gene33043:intron | 35.0% | |
| CAATAGATGGTGAAGTGTAT+GGG | + | chr1.1:6440689-6440708 | None:intergenic | 35.0% | |
| CACATAAAGCAAGAGAGATA+TGG | - | chr1.1:6440452-6440471 | MS.gene33043:CDS | 35.0% | |
| CTACAGATTCCAGAAAATGA+TGG | + | chr1.1:6439729-6439748 | None:intergenic | 35.0% | |
| CTAGTATATGGGAATTGTAG+AGG | - | chr1.1:6438870-6438889 | MS.gene33043:intron | 35.0% | |
| CTTTACTAGCGATGGAATTA+GGG | + | chr1.1:6437499-6437518 | None:intergenic | 35.0% | |
| GTGATTAATTATAGGTGAGG+TGG | - | chr1.1:6438257-6438276 | MS.gene33043:CDS | 35.0% | |
| TAAAAACTAGCTACCACTAG+TGG | - | chr1.1:6440399-6440418 | MS.gene33043:CDS | 35.0% | |
| TAGAAAGTGGATAGATTGCT+TGG | - | chr1.1:6439838-6439857 | MS.gene33043:CDS | 35.0% | |
| TATAAATGCGTTAGTTGGGT+TGG | - | chr1.1:6440304-6440323 | MS.gene33043:CDS | 35.0% | |
| TCTTTACTAGCGATGGAATT+AGG | + | chr1.1:6437500-6437519 | None:intergenic | 35.0% | |
| TGTTCATATGTTACCACTAG+TGG | + | chr1.1:6440415-6440434 | None:intergenic | 35.0% | |
| TTGGAAGTTGTTACTGGTAA+AGG | - | chr1.1:6437932-6437951 | MS.gene33043:intron | 35.0% | |
| TTTACTAGCGATGGAATTAG+GGG | + | chr1.1:6437498-6437517 | None:intergenic | 35.0% | |
| ! | AAAATTTGGTTCGAACCCAT+CGG | + | chr1.1:6438427-6438446 | None:intergenic | 35.0% |
| ! | AAGGACCACCAATTTTAAAC+GGG | - | chr1.1:6440569-6440588 | MS.gene33043:CDS | 35.0% |
| ! | ATGCTAAAGCCAAAGGTATA+TGG | - | chr1.1:6439947-6439966 | MS.gene33043:CDS | 35.0% |
| ! | CAAGGACCACCAATTTTAAA+CGG | - | chr1.1:6440568-6440587 | MS.gene33043:CDS | 35.0% |
| ! | GCAAAGTACAGTGTCTTATT+CGG | + | chr1.1:6439532-6439551 | None:intergenic | 35.0% |
| ! | GCCAAAAAACCATCATTTTC+TGG | - | chr1.1:6439717-6439736 | MS.gene33043:CDS | 35.0% |
| ! | TGCTAAAGCCAAAGGTATAT+GGG | - | chr1.1:6439948-6439967 | MS.gene33043:CDS | 35.0% |
| ! | TTCGAACCAAATTTTCAACC+CGG | - | chr1.1:6438432-6438451 | MS.gene33043:intron | 35.0% |
| ! | TTTTACGGCTTTTACCACAT+CGG | + | chr1.1:6437579-6437598 | None:intergenic | 35.0% |
| !! | AATAGTGGGTACACTAGAAT+GGG | + | chr1.1:6440075-6440094 | None:intergenic | 35.0% |
| !! | GATTTTGACATGAACTGCTA+AGG | - | chr1.1:6440333-6440352 | MS.gene33043:CDS | 35.0% |
| !! | TTTCACCCTAATTTGCTTCA+AGG | - | chr1.1:6440550-6440569 | MS.gene33043:CDS | 35.0% |
| !!! | GATGGTTTTTTGGCCATTTA+CGG | + | chr1.1:6439711-6439730 | None:intergenic | 35.0% |
| !!! | TTGGGTATAAGTGTTGGTTT+TGG | - | chr1.1:6439355-6439374 | MS.gene33043:intron | 35.0% |
| !!! | TTTTTTTACCGTGAAAGGGA+AGG | - | chr1.1:6440259-6440278 | MS.gene33043:CDS | 35.0% |
| !!! | TTTTTTTTGCCAATGGTTGG+GGG | - | chr1.1:6439415-6439434 | MS.gene33043:intron | 35.0% |
| AAAATCAGCAATGTCGGTCT+TGG | + | chr1.1:6440007-6440026 | None:intergenic | 40.0% | |
| AAAATCCTCAAACATGGGGT+TGG | - | chr1.1:6440045-6440064 | MS.gene33043:intron | 40.0% | |
| AAAGTGGATAGATTGCTTGG+AGG | - | chr1.1:6439841-6439860 | MS.gene33043:CDS | 40.0% | |
| AACAATGACGACCCTTGTAA+TGG | - | chr1.1:6438388-6438407 | MS.gene33043:intron | 40.0% | |
| AAGTGGATAGATTGCTTGGA+GGG | - | chr1.1:6439842-6439861 | MS.gene33043:CDS | 40.0% | |
| AATTATAGGTGAGGTGGATG+AGG | - | chr1.1:6438263-6438282 | MS.gene33043:CDS | 40.0% | |
| ACGAAGTTGAGATATGGAAG+AGG | - | chr1.1:6439275-6439294 | MS.gene33043:intron | 40.0% | |
| ACGGAATTGGAAGTTGTTAC+TGG | - | chr1.1:6437926-6437945 | MS.gene33043:intron | 40.0% | |
| ACTTACTTGCTTCGCAATAG+TGG | + | chr1.1:6440090-6440109 | None:intergenic | 40.0% | |
| ATAGCTTTCCTTCCCTTTCA+CGG | + | chr1.1:6440270-6440289 | None:intergenic | 40.0% | |
| ATCGCTAGTAAAGACTTTGG+CGG | - | chr1.1:6437506-6437525 | MS.gene33043:intron | 40.0% | |
| ATGGTGAAGTGTATGGGAAA+TGG | + | chr1.1:6440683-6440702 | None:intergenic | 40.0% | |
| ATTAGGGTGAAAGAGGCAAA+TGG | + | chr1.1:6440542-6440561 | None:intergenic | 40.0% | |
| ATTATAGGTGAGGTGGATGA+GGG | - | chr1.1:6438264-6438283 | MS.gene33043:CDS | 40.0% | |
| CAATGACACAATATTGACCC+TGG | - | chr1.1:6439063-6439082 | MS.gene33043:intron | 40.0% | |
| CACCACAAATTTAACAGTGG+CGG | - | chr1.1:6437610-6437629 | MS.gene33043:intron | 40.0% | |
| CCAATAGATGGTGAAGTGTA+TGG | + | chr1.1:6440690-6440709 | None:intergenic | 40.0% | |
| CCATACACTTCACCATCTAT+TGG | - | chr1.1:6440687-6440706 | MS.gene33043:CDS | 40.0% | |
| CTTACTTGCTTCGCAATAGT+GGG | + | chr1.1:6440089-6440108 | None:intergenic | 40.0% | |
| GAAGCAAATTAGGGTGAAAG+AGG | + | chr1.1:6440549-6440568 | None:intergenic | 40.0% | |
| GACACAAACATGTTCAACCA+TGG | + | chr1.1:6439985-6440004 | None:intergenic | 40.0% | |
| GCACTTGTGTTGAACTAGAA+AGG | - | chr1.1:6440636-6440655 | MS.gene33043:CDS | 40.0% | |
| GGGGTGATTAATTATAGGTG+AGG | - | chr1.1:6438254-6438273 | MS.gene33043:CDS | 40.0% | |
| GGTCGTAATGTATCTTCCAT+TGG | - | chr1.1:6439452-6439471 | MS.gene33043:intron | 40.0% | |
| GGTGATTTACTCGGAATTTG+AGG | - | chr1.1:6438285-6438304 | MS.gene33043:CDS | 40.0% | |
| GTGGTCCTTGAAGCAAATTA+GGG | + | chr1.1:6440558-6440577 | None:intergenic | 40.0% | |
| GTTACCATACGACCAATAGA+TGG | + | chr1.1:6440702-6440721 | None:intergenic | 40.0% | |
| TAATCAAAACCGTCACCTTC+TGG | + | chr1.1:6438346-6438365 | None:intergenic | 40.0% | |
| TACCTTGAACACTTCGTTCA+TGG | - | chr1.1:6437410-6437429 | MS.gene33043:intron | 40.0% | |
| TCCATCGCTAGTAAAGACTT+TGG | - | chr1.1:6437503-6437522 | MS.gene33043:intron | 40.0% | |
| TCGACGTAGAGAAGTTGAAA+AGG | + | chr1.1:6437719-6437738 | None:intergenic | 40.0% | |
| TCTCAACTTCGTACATGTGT+AGG | + | chr1.1:6439267-6439286 | None:intergenic | 40.0% | |
| TCTTCAACAAGCTCCTGATA+TGG | - | chr1.1:6438054-6438073 | MS.gene33043:intron | 40.0% | |
| TGAGGATGATGTGAAGTACA+TGG | - | chr1.1:6439891-6439910 | MS.gene33043:CDS | 40.0% | |
| TGGTGAAGTGTATGGGAAAT+GGG | + | chr1.1:6440682-6440701 | None:intergenic | 40.0% | |
| TTCACCATCTATTGGTCGTA+TGG | - | chr1.1:6440695-6440714 | MS.gene33043:CDS | 40.0% | |
| TTGACATGAACTGCTAAGGT+TGG | - | chr1.1:6440337-6440356 | MS.gene33043:CDS | 40.0% | |
| TTTCAACTTCTCTACGTCGA+CGG | - | chr1.1:6437719-6437738 | MS.gene33043:intron | 40.0% | |
| TTTCCGTTATGGTCCTCAAA+CGG | - | chr1.1:6437895-6437914 | MS.gene33043:intron | 40.0% | |
| ! | AGGACCACCAATTTTAAACG+GGG | - | chr1.1:6440570-6440589 | MS.gene33043:CDS | 40.0% |
| ! | GACAAACCGGGTTGAAAATT+TGG | + | chr1.1:6438441-6438460 | None:intergenic | 40.0% |
| ! | TTACCCACCCCGTTTAAAAT+TGG | + | chr1.1:6440580-6440599 | None:intergenic | 40.0% |
| ! | TTCCATGAACGAAGTGTTCA+AGG | + | chr1.1:6437415-6437434 | None:intergenic | 40.0% |
| ! | TTGAGATCTTGCTGACGTTT+TGG | - | chr1.1:6439674-6439693 | MS.gene33043:intron | 40.0% |
| !! | AGCTCTAAGCAATAGAGAAC+CGG | + | chr1.1:6438481-6438500 | None:intergenic | 40.0% |
| !! | AGCTTGTTGAAGAACGATTC+TGG | + | chr1.1:6438047-6438066 | None:intergenic | 40.0% |
| !! | CAATAGTGGGTACACTAGAA+TGG | + | chr1.1:6440076-6440095 | None:intergenic | 40.0% |
| !! | CGAATTTTAAGCTTGTTCCG+AGG | - | chr1.1:6437804-6437823 | MS.gene33043:intron | 40.0% |
| !!! | ACGGTTTTGATTACGTGGAA+GGG | - | chr1.1:6438353-6438372 | MS.gene33043:CDS | 40.0% |
| !!! | CTCTTTTTTGCTTCACTTGG+TGG | - | chr1.1:6437992-6438011 | MS.gene33043:intron | 40.0% |
| !!! | GAGCTCTTTTTTGCTTCACT+TGG | - | chr1.1:6437989-6438008 | MS.gene33043:intron | 40.0% |
| !!! | GCCGGTGTCATGTAAAATTT+TGG | + | chr1.1:6438949-6438968 | None:intergenic | 40.0% |
| AACATGTTCAACCATGGGTG+AGG | + | chr1.1:6439979-6439998 | None:intergenic | 45.0% | |
| AGAGATGAAACGTCGTCGTT+TGG | + | chr1.1:6437455-6437474 | None:intergenic | 45.0% | |
| AGCAAGAGAGATATGGACCA+AGG | - | chr1.1:6440459-6440478 | MS.gene33043:CDS | 45.0% | |
| AGGTGCATCCCATATACCTT+TGG | + | chr1.1:6439959-6439978 | None:intergenic | 45.0% | |
| AGTGGTCAGACTTTCCGTTA+TGG | - | chr1.1:6437884-6437903 | MS.gene33043:intron | 45.0% | |
| AGTTGTACTTAGCAGCTTCC+AGG | + | chr1.1:6439084-6439103 | None:intergenic | 45.0% | |
| ATGACGACCCTTGTAATGGT+TGG | - | chr1.1:6438392-6438411 | MS.gene33043:intron | 45.0% | |
| ATTGTGGGCCAACCATTACA+AGG | + | chr1.1:6438403-6438422 | None:intergenic | 45.0% | |
| CAAGAGAGATATGGACCAAG+GGG | - | chr1.1:6440461-6440480 | MS.gene33043:CDS | 45.0% | |
| CGCCACTGTTAAATTTGTGG+TGG | + | chr1.1:6437612-6437631 | None:intergenic | 45.0% | |
| CTGAAGAAGGAAGACAAACC+GGG | + | chr1.1:6438453-6438472 | None:intergenic | 45.0% | |
| GAAGAGGATGCTAAAGCCAA+AGG | - | chr1.1:6439940-6439959 | MS.gene33043:CDS | 45.0% | |
| GCAAGAGAGATATGGACCAA+GGG | - | chr1.1:6440460-6440479 | MS.gene33043:CDS | 45.0% | |
| GCCAAAGTCTTTACTAGCGA+TGG | + | chr1.1:6437507-6437526 | None:intergenic | 45.0% | |
| GCTGAAGAAGGAAGACAAAC+CGG | + | chr1.1:6438454-6438473 | None:intergenic | 45.0% | |
| GGGCGAAATGGAAAGAAGAT+TGG | + | chr1.1:6437478-6437497 | None:intergenic | 45.0% | |
| GGTGAAGTGTATGGGAAATG+GGG | + | chr1.1:6440681-6440700 | None:intergenic | 45.0% | |
| GGTGGAACTTTATCTAACGC+CGG | - | chr1.1:6437857-6437876 | MS.gene33043:intron | 45.0% | |
| GGTGGTCCTTGAAGCAAATT+AGG | + | chr1.1:6440559-6440578 | None:intergenic | 45.0% | |
| GTGGATGAGGGTGATTTACT+CGG | - | chr1.1:6438276-6438295 | MS.gene33043:CDS | 45.0% | |
| GTTGTACTTAGCAGCTTCCA+GGG | + | chr1.1:6439083-6439102 | None:intergenic | 45.0% | |
| GTTTGTCTTCCTTCTTCAGC+TGG | - | chr1.1:6438454-6438473 | MS.gene33043:intron | 45.0% | |
| TAAACGGGGTGGGTAAGATT+TGG | - | chr1.1:6440584-6440603 | MS.gene33043:CDS | 45.0% | |
| TACTAAAGATGCAGAGTGGC+TGG | - | chr1.1:6438312-6438331 | MS.gene33043:CDS | 45.0% | |
| TCCTCAAACGGCAAACGTAA+CGG | - | chr1.1:6437907-6437926 | MS.gene33043:intron | 45.0% | |
| TTCGAACCCATCGGAATTGT+GGG | + | chr1.1:6438418-6438437 | None:intergenic | 45.0% | |
| TTGCAACCAAGGTCACAGTT+GGG | + | chr1.1:6440500-6440519 | None:intergenic | 45.0% | |
| TTGGCCATTTACGGAACTGT+GGG | + | chr1.1:6439702-6439721 | None:intergenic | 45.0% | |
| TTGGGGGAAAACTGACTACA+CGG | - | chr1.1:6439431-6439450 | MS.gene33043:intron | 45.0% | |
| TTGTGGGCCAACCATTACAA+GGG | + | chr1.1:6438402-6438421 | None:intergenic | 45.0% | |
| TTTGCAACCAAGGTCACAGT+TGG | + | chr1.1:6440501-6440520 | None:intergenic | 45.0% | |
| TTTGCTACGTGTAAAGCGTG+TGG | - | chr1.1:6439918-6439937 | MS.gene33043:CDS | 45.0% | |
| TTTGGCCATTTACGGAACTG+TGG | + | chr1.1:6439703-6439722 | None:intergenic | 45.0% | |
| ! | AACGGCAAACGTAACGGAAT+TGG | - | chr1.1:6437913-6437932 | MS.gene33043:intron | 45.0% |
| ! | ACCACCAATTTTAAACGGGG+TGG | - | chr1.1:6440573-6440592 | MS.gene33043:CDS | 45.0% |
| ! | CCACCAATTTTAAACGGGGT+GGG | - | chr1.1:6440574-6440593 | MS.gene33043:CDS | 45.0% |
| ! | TCAGCTGTTTCATCACACTG+CGG | - | chr1.1:6440723-6440742 | MS.gene33043:CDS | 45.0% |
| ! | TTGCCGTTTGAGGACCATAA+CGG | + | chr1.1:6437901-6437920 | None:intergenic | 45.0% |
| ! | TTTGCTTCACTTGGTGGTCT+TGG | - | chr1.1:6437998-6438017 | MS.gene33043:intron | 45.0% |
| ! | TTTTTGATCCGTGCTCCGTT+CGG | - | chr1.1:6438620-6438639 | MS.gene33043:intron | 45.0% |
| !! | GACGGATTATCTTGGGTTGA+CGG | - | chr1.1:6437832-6437851 | MS.gene33043:intron | 45.0% |
| !! | GATTATCTTGGGTTGACGGT+GGG | - | chr1.1:6437836-6437855 | MS.gene33043:intron | 45.0% |
| !! | GGAGGGTTGAGATTTGTTGA+GGG | - | chr1.1:6439859-6439878 | MS.gene33043:CDS | 45.0% |
| !! | GTTTTCTATGCCTGACTCGT+CGG | + | chr1.1:6438898-6438917 | None:intergenic | 45.0% |
| !! | TGGAGGGTTGAGATTTGTTG+AGG | - | chr1.1:6439858-6439877 | MS.gene33043:CDS | 45.0% |
| !!! | AGGTGACGGTTTTGATTACG+TGG | - | chr1.1:6438348-6438367 | MS.gene33043:CDS | 45.0% |
| !!! | GACGGTTTTGATTACGTGGA+AGG | - | chr1.1:6438352-6438371 | MS.gene33043:CDS | 45.0% |
| !! | AAAAAAAAAAAAAAAAATCA+TGG | + | chr1.1:6439131-6439150 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTAGAAAAAAT+TGG | - | chr1.1:6439141-6439160 | MS.gene33043:intron | 5.0% |
| ACGTGTAAAGCGTGTGGAAG+AGG | - | chr1.1:6439924-6439943 | MS.gene33043:CDS | 50.0% | |
| AGATAATCCGTCCACGACCT+CGG | + | chr1.1:6437824-6437843 | None:intergenic | 50.0% | |
| ATCCTCAAACATGGGGTTGG+TGG | - | chr1.1:6440048-6440067 | MS.gene33043:intron | 50.0% | |
| CAATAAACCCGAACGGAGCA+CGG | + | chr1.1:6438631-6438650 | None:intergenic | 50.0% | |
| CGATGGAATTAGGGGCGAAA+TGG | + | chr1.1:6437490-6437509 | None:intergenic | 50.0% | |
| CGCCGCCACTGTTAAATTTG+TGG | + | chr1.1:6437615-6437634 | None:intergenic | 50.0% | |
| GAAAGTCTGACCACTGACAC+CGG | + | chr1.1:6437879-6437898 | None:intergenic | 50.0% | |
| GATGAAACGTCGTCGTTTGG+TGG | + | chr1.1:6437452-6437471 | None:intergenic | 50.0% | |
| GCAGTGTGATGAAACAGCTG+AGG | + | chr1.1:6440724-6440743 | None:intergenic | 50.0% | |
| GTGAAAGAGGCAAATGGCTC+AGG | + | chr1.1:6440536-6440555 | None:intergenic | 50.0% | |
| GTGACACTACCAGAAGGTGA+CGG | - | chr1.1:6438334-6438353 | MS.gene33043:CDS | 50.0% | |
| GTGGGTAAGATTTGGAGGGT+GGG | - | chr1.1:6440592-6440611 | MS.gene33043:CDS | 50.0% | |
| GTTCGAACCCATCGGAATTG+TGG | + | chr1.1:6438419-6438438 | None:intergenic | 50.0% | |
| TCACAGTTGGGTGTTCCTAG+TGG | + | chr1.1:6440488-6440507 | None:intergenic | 50.0% | |
| TCTTCCTTCTTCAGCTGGAC+CGG | - | chr1.1:6438459-6438478 | MS.gene33043:intron | 50.0% | |
| TGGCCATTTACGGAACTGTG+GGG | + | chr1.1:6439701-6439720 | None:intergenic | 50.0% | |
| TTACGTGGAAGGGTTCGTTG+TGG | - | chr1.1:6438363-6438382 | MS.gene33043:CDS | 50.0% | |
| TTCTTCCCATAATGCCCCAC+CGG | + | chr1.1:6437765-6437784 | None:intergenic | 50.0% | |
| ! | CCCACCCCGTTTAAAATTGG+TGG | + | chr1.1:6440577-6440596 | None:intergenic | 50.0% |
| ! | CTTGGTGGTCTTGGTCAGTT+TGG | - | chr1.1:6438007-6438026 | MS.gene33043:intron | 50.0% |
| ! | GGTAACGGTCACTCCATCAA+CGG | - | chr1.1:6437638-6437657 | MS.gene33043:intron | 50.0% |
| ! | GTCAGTTTTCCCCCAACCAT+TGG | + | chr1.1:6439427-6439446 | None:intergenic | 50.0% |
| ! | TACGGCTTTTACCACATCGG+CGG | + | chr1.1:6437576-6437595 | None:intergenic | 50.0% |
| ! | TCCGTTACGTTTGCCGTTTG+AGG | + | chr1.1:6437911-6437930 | None:intergenic | 50.0% |
| ! | TGGGAAATGGGGTCCCATTT+TGG | + | chr1.1:6440670-6440689 | None:intergenic | 50.0% |
| ! | TTAAGCTTGTTCCGAGGTCG+TGG | - | chr1.1:6437810-6437829 | MS.gene33043:intron | 50.0% |
| ! | TTATCTAACGCCGGTGTCAG+TGG | - | chr1.1:6437866-6437885 | MS.gene33043:intron | 50.0% |
| ! | TTTTGATCCGTGCTCCGTTC+GGG | - | chr1.1:6438621-6438640 | MS.gene33043:intron | 50.0% |
| !! | AGGTCGTGGACGGATTATCT+TGG | - | chr1.1:6437824-6437843 | MS.gene33043:intron | 50.0% |
| !! | GGATTATCTTGGGTTGACGG+TGG | - | chr1.1:6437835-6437854 | MS.gene33043:intron | 50.0% |
| !! | GGTCGTGGACGGATTATCTT+GGG | - | chr1.1:6437825-6437844 | MS.gene33043:intron | 50.0% |
| !!! | GGTGGTTGCTGCTGCTTTTA+CGG | + | chr1.1:6437594-6437613 | None:intergenic | 50.0% |
| AATTTAACAGTGGCGGCGCG+TGG | - | chr1.1:6437617-6437636 | MS.gene33043:intron | 55.0% | |
| ACGGGGTGGGTAAGATTTGG+AGG | - | chr1.1:6440587-6440606 | MS.gene33043:CDS | 55.0% | |
| AGAACCGGTCCAGCTGAAGA+AGG | + | chr1.1:6438466-6438485 | None:intergenic | 55.0% | |
| CGGGGTGGGTAAGATTTGGA+GGG | - | chr1.1:6440588-6440607 | MS.gene33043:CDS | 55.0% | |
| GACAAGTCCTTTCTCCGCCA+TGG | + | chr1.1:6437669-6437688 | None:intergenic | 55.0% | |
| GACCACCAACCCCATGTTTG+AGG | + | chr1.1:6440053-6440072 | None:intergenic | 55.0% | |
| GGAACACCCAACTGTGACCT+TGG | - | chr1.1:6440491-6440510 | MS.gene33043:CDS | 55.0% | |
| GGTCCCCACAGTTCCGTAAA+TGG | - | chr1.1:6439695-6439714 | MS.gene33043:intron | 55.0% | |
| GGTGGGTAAGATTTGGAGGG+TGG | - | chr1.1:6440591-6440610 | MS.gene33043:CDS | 55.0% | |
| GTTCCACACGTCGACGTTTC+CGG | - | chr1.1:6437743-6437762 | MS.gene33043:intron | 55.0% | |
| TATGGACCAAGGGGTCCACT+AGG | - | chr1.1:6440470-6440489 | MS.gene33043:CDS | 55.0% | |
| TATGGGATGCACCTCACCCA+TGG | - | chr1.1:6439965-6439984 | MS.gene33043:intron | 55.0% | |
| TGGCTGGTGACACTACCAGA+AGG | - | chr1.1:6438328-6438347 | MS.gene33043:CDS | 55.0% | |
| TGTAGAGGATCCGACGAGTC+AGG | - | chr1.1:6438885-6438904 | MS.gene33043:intron | 55.0% | |
| ! | ACGTTTCCGGTGGGGCATTA+TGG | - | chr1.1:6437756-6437775 | MS.gene33043:intron | 55.0% |
| ! | CGTTTCCGGTGGGGCATTAT+GGG | - | chr1.1:6437757-6437776 | MS.gene33043:intron | 55.0% |
| ! | GGTTGGCCCACAATTCCGAT+GGG | - | chr1.1:6438409-6438428 | MS.gene33043:intron | 55.0% |
| ! | TGGTTGGCCCACAATTCCGA+TGG | - | chr1.1:6438408-6438427 | MS.gene33043:intron | 55.0% |
| !! | TATCTTGGGTTGACGGTGGG+TGG | - | chr1.1:6437839-6437858 | MS.gene33043:intron | 55.0% |
| ACACGTCGACGTTTCCGGTG+GGG | - | chr1.1:6437748-6437767 | MS.gene33043:intron | 60.0% | |
| ACCACATCGGCGGTGGTGTA+AGG | + | chr1.1:6437566-6437585 | None:intergenic | 60.0% | |
| CACACGTCGACGTTTCCGGT+GGG | - | chr1.1:6437747-6437766 | MS.gene33043:intron | 60.0% | |
| CATCAACGGCCAAGCCATGG+CGG | - | chr1.1:6437652-6437671 | MS.gene33043:intron | 60.0% | |
| CCACATCGGCGGTGGTGTAA+GGG | + | chr1.1:6437565-6437584 | None:intergenic | 60.0% | |
| CTCCATCAACGGCCAAGCCA+TGG | - | chr1.1:6437649-6437668 | MS.gene33043:intron | 60.0% | |
| GCTTGTTCCGAGGTCGTGGA+CGG | - | chr1.1:6437814-6437833 | MS.gene33043:intron | 60.0% | |
| GGTGGTGTAAGGGCGGAGTA+CGG | + | chr1.1:6437555-6437574 | None:intergenic | 60.0% | |
| GTCCTTTCTCCGCCATGGCT+TGG | + | chr1.1:6437664-6437683 | None:intergenic | 60.0% | |
| TGTCCTCGACATGCGAGCCA+CGG | - | chr1.1:6437685-6437704 | MS.gene33043:intron | 60.0% | |
| TTGAAAAGGCTCCTCCGCCG+TGG | + | chr1.1:6437705-6437724 | None:intergenic | 60.0% | |
| ! | GGCTTTTACCACATCGGCGG+TGG | + | chr1.1:6437573-6437592 | None:intergenic | 60.0% |
| ! | GGTGTTCCTAGTGGACCCCT+TGG | + | chr1.1:6440479-6440498 | None:intergenic | 60.0% |
| ACAGTGGCGGCGCGTGGTAA+CGG | - | chr1.1:6437623-6437642 | MS.gene33043:intron | 65.0% | |
| CATCGGCGGTGGTGTAAGGG+CGG | + | chr1.1:6437562-6437581 | None:intergenic | 65.0% | |
| CCACACGTCGACGTTTCCGG+TGG | - | chr1.1:6437746-6437765 | MS.gene33043:intron | 65.0% | |
| CCACCGGAAACGTCGACGTG+TGG | + | chr1.1:6437749-6437768 | None:intergenic | 65.0% | |
| CCCTTACACCACCGCCGATG+TGG | - | chr1.1:6437562-6437581 | MS.gene33043:intron | 65.0% | |
| GTAAGGGCGGAGTACGGCGA+GGG | + | chr1.1:6437549-6437568 | None:intergenic | 65.0% | |
| TAAGGGCGGAGTACGGCGAG+GGG | + | chr1.1:6437548-6437567 | None:intergenic | 65.0% | |
| TGTAAGGGCGGAGTACGGCG+AGG | + | chr1.1:6437550-6437569 | None:intergenic | 65.0% | |
| ! | CGCCATGGCTTGGCCGTTGA+TGG | + | chr1.1:6437654-6437673 | None:intergenic | 65.0% |
| ! | GGCCAAGCCATGGCGGAGAA+AGG | - | chr1.1:6437659-6437678 | MS.gene33043:intron | 65.0% |
| CCTCGACATGCGAGCCACGG+CGG | - | chr1.1:6437688-6437707 | MS.gene33043:intron | 70.0% | |
| GAGTACGGCGAGGGGAGTGG+AGG | + | chr1.1:6437540-6437559 | None:intergenic | 70.0% | |
| CCGCCGTGGCTCGCATGTCG+AGG | + | chr1.1:6437691-6437710 | None:intergenic | 75.0% | |
| CGACATGCGAGCCACGGCGG+AGG | - | chr1.1:6437691-6437710 | MS.gene33043:intron | 75.0% | |
| GCGGAGTACGGCGAGGGGAG+TGG | + | chr1.1:6437543-6437562 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 6437401 | 6440846 | 6437401 | ID=MS.gene33043 |
| chr1.1 | mRNA | 6437401 | 6440846 | 6437401 | ID=MS.gene33043.t1;Parent=MS.gene33043 |
| chr1.1 | exon | 6440172 | 6440846 | 6440172 | ID=MS.gene33043.t1.exon1;Parent=MS.gene33043.t1 |
| chr1.1 | CDS | 6440172 | 6440846 | 6440172 | ID=cds.MS.gene33043.t1;Parent=MS.gene33043.t1 |
| chr1.1 | exon | 6439701 | 6439976 | 6439701 | ID=MS.gene33043.t1.exon2;Parent=MS.gene33043.t1 |
| chr1.1 | CDS | 6439701 | 6439976 | 6439701 | ID=cds.MS.gene33043.t1;Parent=MS.gene33043.t1 |
| chr1.1 | exon | 6438144 | 6438406 | 6438144 | ID=MS.gene33043.t1.exon3;Parent=MS.gene33043.t1 |
| chr1.1 | CDS | 6438144 | 6438406 | 6438144 | ID=cds.MS.gene33043.t1;Parent=MS.gene33043.t1 |
| chr1.1 | exon | 6437401 | 6437404 | 6437401 | ID=MS.gene33043.t1.exon4;Parent=MS.gene33043.t1 |
| chr1.1 | CDS | 6437401 | 6437404 | 6437401 | ID=cds.MS.gene33043.t1;Parent=MS.gene33043.t1 |
| Gene Sequence |
| Protein sequence |
