AlfalfaGEDB | MS.gene33363

M. sativa cultivar XinJiangDaYe / MS.gene33363

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33363.t1	XP_013454751.1	98.6	851	12	0	2	852	1	851	0.00E+00	1523.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33363.t1	Q9S7C0	76.9	792	180	2	2	792	1	790	0.0e+00	1230.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33363.t1	A0A072UGG8	98.6	851	12	0	2	852	1	851	0.0e+00	1523.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049983	MS.gene33363	0.819929	8.97E-53	-1.69E-46
MS.gene050084	MS.gene33363	0.8117	6.14E-51	-1.69E-46
MS.gene050085	MS.gene33363	0.840728	7.30E-58	-1.69E-46
MS.gene050359	MS.gene33363	0.809739	1.63E-50	-1.69E-46
MS.gene050361	MS.gene33363	0.843336	1.49E-58	-1.69E-46
MS.gene050384	MS.gene33363	0.807733	4.38E-50	-1.69E-46
MS.gene050386	MS.gene33363	0.813915	2.01E-51	-1.69E-46
MS.gene050646	MS.gene33363	0.816759	4.69E-52	-1.69E-46
MS.gene050654	MS.gene33363	0.822616	2.15E-53	-1.69E-46
MS.gene050689	MS.gene33363	0.80122	9.98E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 210 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGGCAGCTGAAAGTGT+TGG	0.585816	4.2:+88123487	MS.gene33363:CDS
AAAGTTCGTTTGAATGTGCA+TGG	0.566959	4.2:+88124660	MS.gene33363:CDS
AAATAACGCGCCTGAATCAA+CGG	0.500654	4.2:-88123140	None:intergenic
AAATGTTCCTGTAGCTGAGT+TGG	0.455294	4.2:+88125616	MS.gene33363:CDS
AACATCGGCATCATTGCCAT+TGG	0.473099	4.2:-88124929	None:intergenic
AACCCCAGGGGTATCAGCAT+TGG	0.491129	4.2:-88124971	None:intergenic
AACTTCAGGAGGTGGAAGAT+TGG	0.468425	4.2:+88125931	MS.gene33363:CDS
AAGGCCAATGCTGATACCCC+TGG	0.506668	4.2:+88124967	MS.gene33363:CDS
AATGGATGTTGATGATACCA+AGG	0.715432	4.2:+88125032	MS.gene33363:CDS
AATGTCAGTGCCTTGATACT+TGG	0.493388	4.2:-88124422	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGTGATAAGAATACAGG+AGG	-	chr4.2:88127171-88127190	None:intergenic	30.0%
ACATGTTAAACTACTATAGC+AGG	+	chr4.2:88126753-88126772	MS.gene33363:intron	30.0%
AGTTTAAGCAACATAAACTG+CGG	-	chr4.2:88125309-88125328	None:intergenic	30.0%
ATTATTCCTAAAGGAACACA+CGG	-	chr4.2:88124096-88124115	None:intergenic	30.0%
CACAGATTAAGAGACTTATT+GGG	+	chr4.2:88123039-88123058	MS.gene33363:CDS	30.0%
CAGATGAACAATTAAGAGAA+TGG	-	chr4.2:88127204-88127223	None:intergenic	30.0%
CATAAATGCACAATAGGTTA+TGG	-	chr4.2:88124747-88124766	None:intergenic	30.0%
CCCATCAATAATTAGAAAAC+AGG	-	chr4.2:88125255-88125274	None:intergenic	30.0%
CGGTTAATGATTGTTGTATT+GGG	+	chr4.2:88123252-88123271	MS.gene33363:CDS	30.0%
GATCAGTTCAACTATTGTAT+AGG	+	chr4.2:88126271-88126290	MS.gene33363:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	88122842	88127472	88122842	ID=MS.gene33363
chr4.2	mRNA	88122842	88127472	88122842	ID=MS.gene33363.t1;Parent=MS.gene33363
chr4.2	exon	88122842	88124015	88122842	ID=MS.gene33363.t1.exon1;Parent=MS.gene33363.t1
chr4.2	CDS	88122842	88124015	88122842	ID=cds.MS.gene33363.t1;Parent=MS.gene33363.t1
chr4.2	exon	88124302	88124529	88124302	ID=MS.gene33363.t1.exon2;Parent=MS.gene33363.t1
chr4.2	CDS	88124302	88124529	88124302	ID=cds.MS.gene33363.t1;Parent=MS.gene33363.t1
chr4.2	exon	88124612	88124707	88124612	ID=MS.gene33363.t1.exon3;Parent=MS.gene33363.t1
chr4.2	CDS	88124612	88124707	88124612	ID=cds.MS.gene33363.t1;Parent=MS.gene33363.t1
chr4.2	exon	88124826	88125053	88124826	ID=MS.gene33363.t1.exon4;Parent=MS.gene33363.t1
chr4.2	CDS	88124826	88125053	88124826	ID=cds.MS.gene33363.t1;Parent=MS.gene33363.t1
chr4.2	exon	88125590	88125778	88125590	ID=MS.gene33363.t1.exon5;Parent=MS.gene33363.t1
chr4.2	CDS	88125590	88125778	88125590	ID=cds.MS.gene33363.t1;Parent=MS.gene33363.t1
chr4.2	exon	88125873	88126019	88125873	ID=MS.gene33363.t1.exon6;Parent=MS.gene33363.t1
chr4.2	CDS	88125873	88126019	88125873	ID=cds.MS.gene33363.t1;Parent=MS.gene33363.t1
chr4.2	exon	88126214	88126363	88126214	ID=MS.gene33363.t1.exon7;Parent=MS.gene33363.t1
chr4.2	CDS	88126214	88126363	88126214	ID=cds.MS.gene33363.t1;Parent=MS.gene33363.t1
chr4.2	exon	88126447	88126577	88126447	ID=MS.gene33363.t1.exon8;Parent=MS.gene33363.t1
chr4.2	CDS	88126447	88126577	88126447	ID=cds.MS.gene33363.t1;Parent=MS.gene33363.t1
chr4.2	exon	88127256	88127472	88127256	ID=MS.gene33363.t1.exon9;Parent=MS.gene33363.t1
chr4.2	CDS	88127256	88127472	88127256	ID=cds.MS.gene33363.t1;Parent=MS.gene33363.t1

Gene Sequence

>MS.gene33363

GAAGATGAGTGTGGTGGGATTTGATTTTGGTAACGAGAGTTGCATTGTTGCTGTTGCTAGACAAAGAGGGATTGATGTTGTGTTAAACGATGAATCGAAGCGCGAAACACCGGCGATTGTGTGTTTCGGTGAAAAGCAGCGGTTTATTGGTACTGCTGGTGCTGCTTCGACTATGATGAATCCTAAGAATTCAATTTCACAGATTAAGAGACTTATTGGGAAATTGTATTCGGATCCGGATTTGCAGCGTGATCTTAAGTCCTTGCCTTTTAGTGTGACTGAGGGGCCGGATGGGTATCCGTTGATTCAGGCGCGTTATTTGGGGGAGGTTAAGCTGTTTACCCCGACTCAGGTGTTTGCGATGATGTTGGGGAATATGAAGGAGATAGCTGAGAAGAATCTTAATGCTGCGGTTAATGATTGTTGTATTGGGATTCCGTGTTATTTTACTGATCTGCAGAGAAGGGCTGTGTTGGATGCTGCAACTATTGCTGGTTTGCATCCGCTTCGTTTGCTTCATGAGACTACTGCGACTGCATTGGCGTATGGGATTTATAAGACGGATCTGCCCGAGAATGATCAGCTGAATGTGGCTTTTGTGGATATTGGACATGCTAGTATGCAGGTTTGCATTGCTGGGTTTAAAAAGGGGCAGCTGAAAGTGTTGGCACATTCGTTTGATAGGTCTCTTGGTGGTAGGGATTTTGATGAGGTTTTGTTTCATCATTTTGCTGCAAAGTTTAAGGAGGAGTACAAAATTGATGTGCTTTCTAATGCTAGGGCTTGTTTGAGGCTTAGGGCATCTTGTGAGAAGATGAAGAAGATGCTCAGTGCAAATCCTATAGTGCCCCTGAACATTGAGTGCTTGATGGATGAGAAGGATGTAAAGGGTATCATGAAGCGTGATGAGTTTGAGGAACTGAGTCTCCCGATTTTGGAGCGTGTTAAGGGACCTTTGGAGAGGGCACTTGCTGAAGCAGGACTCTCAGTTGATGATATACATATGGTTGAGGTCGTTGGTTCAGGCTCTCGTGTACCCGCTATAAACAAGATCTTGACAGAGTTTTTCAAGAAGGAGCCTAGGCGAACAATGAATGCCAGTGAATGTGTTGCTAAAGGGGCTGCATTGCAATGTGCTATTCTTAGCCCAACGTTTAAAGTGCGAGAATTTCAGGTAACATTTCAGCATTTGGTTTCATGAGTTTACTTGGTTATTGTTTTCCATTCCTATTTCTTCCACTCATGATAAAACCGTGTGTTCCTTTAGGAATAATGAATTTTGACATTTTCAATGCTATTTCAATTGCTTATCTCTGATATATACCTCTGTTAAGGCCTTAATGAATTTTCACGTGGGTTTCTTTGTGTGTGTTTATTTTATGTCCTTTGCTGTGACTTGTTCATATAATAAGTTTTGCATGATCTGGTATAATGTGGCTATTTTATCTCATGATGTGAAGGTCAATGAAAGCTTTCCTTTCTCGATCTCTCTTGCGTGGAAAGGTTCTGGTCCAGATGCACAGGATAGTGGACCTGACAATCAGCAGAGTTCCCTTGTTTTTCCGAAGGGTAATCCCATACCAAGTATCAAGGCACTGACATTCTACAGGTCAGGAACATTTTCCATTGATGCACAATACAGTGATGTGAATGGGCAGCAAACACCTGCTAGGATCAGCACATATACCGTAAGCCATTTGACAAGTCTTTTAATTTCTTTTAGTATTTTTTATCACATGGAAGTCATTTTACCATTTTGATTGTATGCAGATCGGTCCTTTTGAAGCAAAACAAAGCGAAAAGGCAAAAGTTAAAGTGAAAGTTCGTTTGAATGTGCATGGAATTGCATCTGTTGACTTGGCAACTGTAAGTCTTCTAGTGGCTGCTTAATTTTCTTGCCTACCATAACCTATTGTGCATTTATGATTTTAAGTCAGTGAACATTTTTTCCTGTGAATTAACAACTTTTACTTGTTTTGTTCAGGTCTTGGAAGAGGAAGAAGTTGACGCTTCAGTTTCCAAAGAATCGGCTAAAGAACCTACTAAGATGGAGGCTGATGAAGCTCCTGCTGATGCTGCTGCACCTCCCAATGGCAATGATGCCGATGTTAATATGCAAGATGCAAAGGCCAATGCTGATACCCCTGGGGTTGAAAATGGCGTCCCTGAGACTGGAGATAAGCCTGCACAAATGGATGTTGATGATACCAAGGTGATTACCATTGAAAGGAATATTTAAGTGTATTCTCAATATCAAAATTCCTTTTTATATGCAACTGTTGGATTTTTTTAATGTAAGTGTTTAGCCTGTCATGGTGTCATGGTTTTGATGTGCCTTTCTGTCTGCATTGGAGCTTTTGACAATGTAAAACCAGCCTGCTTATTTTATTGGTATTCACATGAAAAAGGGCCTGTTTTCTAATTATTGATGGGACAGTAATTAGTTTTTCAGAAGATGATAGCGCCGCAGTTTATGTTGCTTAAACTAACTAAGAAACAATTTTAAGAATAGTTTCACAAGTATGGCCTTGTTGTTGAGGTTTGTTGTGGTGTTTCCACGTGTTTGCATGATACTGTTATTGATTTAACTTGAAAATGATTTCCTCATTTTGCTCCTTTAGATTAAATGCAAATCTCCTTAGGATGTACTCGATCAGTTTTTGATAAGATGATAGTGGCACAGTTTACCATAATCCAATATCAATTTTTGCAAGAACTCACCAAAATCAAAATATGTTGTTGATTCAGGCTCCAAAGAAAAAGGTTAAGAAAACAAATGTTCCTGTAGCTGAGTTGGTTTATGGAGCAATGGCACCTGTGGATGTCCAGAAAGCTGTAGAGAAGGAGTATGAAATGGCTTTGCAAGATCGAGTGATGGAGGAAACAAAGGACAAGAAAAATGCAGTAGAGGCTTATGTTTATGACATGAGAAACAAGGTTGGTCTTCTCTTACCCGAAGTCTAACATGAAATACAAATGTCTGTCATTCATAATTACTGAAACTAATTTTTCTTTTGTGCTGTCATTTTAGCTTAATGACAAATACCAAGAGTTTGTTATTGCTTCTGAGAGGGAAGGTCTTACCGCCAAACTTCAGGAGGTGGAAGATTGGCTATATGAGGATGGTGAAGACGAAACTAAAGGTGTATATGTTGCCAAACTTGAAGAGCTCAAAAAGGTAAGTTTTGGATACAAGACAGTAACTGCTCCTGTCCTATGTCAAACTGTAAAATTTTAGAAAGAAAAAGGGATCTGAGAATCCCTGTTGGTTTTTTCCCTTTGTACTTGTATGCGCAAATATTGTGGCTGGAGACATTTTCATGTTAGTTAACCACTGACAACCTTAATTGAGCATTGTTTATGCAATTGCAGCAAGGCGACCCGATCGAAGAGCGTTACAAAGAATACGAGGAGAGGGGTACAATAATTGATCAGTTCAACTATTGTATAGGCAGTTACAGAGAAGCTGCAATGTCAACTGATCTCAAATTTGATCACATTGACATCAACGAGAAACAGAAGGTAATAACCTGTCAATTTTTTCCCCTTTTCCATAAAATGGTTGTAATTTATTCTGAAGTGTATTTATTTTAACGTGTCCGTAGGTCTTGAATGAATGTGTTGAAGCTGAAAACTGGCTTCGGGAGAAGAAGCAGCAGCAGGACTCGCTTCCAAAATATGCCAACCCTGTACTCTTAGTAGCTGAAATAAGAAAGAAAGCTGAGGCTATTGATAGGTATTTTTGTTTTAACTCTTTCTGTGTGATATTCATGGGTACCCTTAATATCACCTCAAAAAAGAGGTCTAAGAGTGGACCTATTCAGCTTTACCTGTTATAGCCGGTTAACATACTATTTTGCTTGTAATCTTTTTTATTCTTTTATATAAATATATCGTTTTAAAAGGAAGAAACATGTTAAACTACTATAGCAGGTACATTCAAGACGTTCACCATTAGTCCTCTTTTTTGAGGTGCATATTAGGCTCCTCAATATTCAGACTATTTATGTTTTTTAGGAAGCTCCTTGTTGTGGCCTTGCTTAATGTTTTTATATTAGGGCCACCCAATATTCATACTATTTATGTTTTCTAGGAATCCCCTTGTTGTGGCCTTGCTTAATGTATTTATATGAACACCTCAGTTGTGTTGGGAAGGATTAACTGCAACTTTTTGTAGCACTGACACTTTAGGTTGAAGGTGTGTTAGGTGTCCAATACATGTCGGACACTGACACATAATTATCTTCAATTATACAGTTTTCTCGAATGATGGCATGTGTCTGCGTGTCAGTGCTTCATAGATTGTAATTTGTGAATCTTGATAAACCTCCTGTATTCTTATCACTATTAATTATTACTCCATTCTCTTAATTGTTCATCTGTTTATTCTGATCAAAATATATATTTTGAATAGGTTCTGCAAGCCGATTATGACAAAACCAAGGCCAGCCAAGCCAGCGGCTCCACAAACACCACCAAGCCCAGCTTCTTCAGGTTCTGAGCAGCAGCAACCTCAGGCAGATGCGAATGCCAGCGCCAGTGAAAATGCCGGTGATAGTGAAAATCAGGCTTCATCAGCATCCACCGAACCAATGGAAACTGATAAGCCAGAGAATACAAGTTCTGCCTAA

Protein sequence

>MS.gene33363.t1

EDECGGIUFWURELHCCCCUTKRDUCCVKRUIEARNTGDCVFRUKAAVYWYCWCCFDYDESUEFNFTDUETYWEIVFGSGFAAUSUVLAFUCDUGAGWVSVDSGALFGGGUAVYPDSGVCDDVGEYEGDSUEESUCCGUULLYWDSVLFYUSAEKGCVGCCNYCWFASASFASUDYCDCIGVWDLUDGSAREUSAECGFCGYWTCUYAGLHCWVUKGAAESVGTFVUUVSWWUGFUUGFVSSFCCKVUGGVQNUCAFUCUGLFEAUGILUEDEEDAQCKSYSAPEHUVLDGUEGCKGYHEAUUVUGTESPDFGACUGTFGEGTCUSRTLSUUYTYGUGRWFRLSCTRYKQDLDRVFQEGAUANNECQUMCCURGCIAMCYSUPNVUSARISGQUKLSFLDLSCVERFWSRCTGUWTUQSAEFPCFSEGUSHTKYQGTDILQVRNIFHUCTIQUCEWAANTCUDQHIYHRSFUSKTKRKGKSUSESSFECAWNCICULGNCLGRGRSURFSFQRIGURTYUDGGUUSSCUCCCTSQWQUCRCUYARCKGQCUYPWGUKWRPUDWRUACTNGCUUYQGSKEKGUENKCSCSUVGLWSNGTCGCPESCREGVUNGFARSSDGGNKGQEKCSRGLCLUHEKQAUUQIPRVCYCFUEGRSYRQTSGGGRLAIUGWURRNURCICCQTURAQKARRPDRRALQRIRGEGYNNUSVQLLYRQLQRSCNVNUSQIUSHUHQRETEGLEUMCUSUKLASGEEAAAGLASKICQPCTLSSUNKKESUGYUUVLQADYDKTKASQASGSTNTTKPSFFRFUAAATSGRCECQRQUKCRUUUKSGFISIHRTNGNUUAREYKFCL