Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34028.t1 | XP_003591930.2 | 96.2 | 873 | 30 | 1 | 1 | 870 | 1 | 873 | 0.00E+00 | 1728.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34028.t1 | Q6TAS3 | 64.3 | 857 | 270 | 8 | 39 | 870 | 47 | 892 | 0.0e+00 | 1096.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34028.t1 | G7I3B8 | 96.2 | 873 | 30 | 1 | 1 | 870 | 1 | 873 | 0.0e+00 | 1728.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene34028 | 0.862057 | 6.63E-64 | -1.69E-46 |
| MS.gene050226 | MS.gene34028 | 0.812851 | 3.44E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene34028 | 0.819599 | 1.07E-52 | -1.69E-46 |
| MS.gene050228 | MS.gene34028 | 0.807631 | 4.60E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene34028 | -0.817146 | 3.84E-52 | -1.69E-46 |
| MS.gene050762 | MS.gene34028 | 0.808729 | 2.68E-50 | -1.69E-46 |
| MS.gene050763 | MS.gene34028 | 0.809971 | 1.45E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene34028 | 0.820446 | 6.83E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene34028 | 0.814779 | 1.29E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene34028 | 0.834209 | 3.42E-56 | -1.69E-46 |
| MS.gene052389 | MS.gene34028 | 0.823498 | 1.34E-53 | -1.69E-46 |
| MS.gene052420 | MS.gene34028 | 0.804551 | 2.05E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene34028 | 0.81428 | 1.67E-51 | -1.69E-46 |
| MS.gene054379 | MS.gene34028 | 0.831871 | 1.31E-55 | -1.69E-46 |
| MS.gene054468 | MS.gene34028 | 0.816413 | 5.60E-52 | -1.69E-46 |
| MS.gene054542 | MS.gene34028 | 0.802532 | 5.37E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene34028 | 0.843727 | 1.17E-58 | -1.69E-46 |
| MS.gene055163 | MS.gene34028 | 0.819532 | 1.11E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene34028 | 0.846985 | 1.54E-59 | -1.69E-46 |
| MS.gene056979 | MS.gene34028 | 0.807842 | 4.15E-50 | -1.69E-46 |
| MS.gene057126 | MS.gene34028 | 0.808484 | 3.03E-50 | -1.69E-46 |
| MS.gene057929 | MS.gene34028 | 0.8156 | 8.51E-52 | -1.69E-46 |
| MS.gene058435 | MS.gene34028 | 0.814164 | 1.77E-51 | -1.69E-46 |
| MS.gene059285 | MS.gene34028 | 0.807151 | 5.81E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene34028 | 0.806933 | 6.47E-50 | -1.69E-46 |
| MS.gene060940 | MS.gene34028 | 0.825323 | 4.99E-54 | -1.69E-46 |
| MS.gene060942 | MS.gene34028 | 0.81444 | 1.54E-51 | -1.69E-46 |
| MS.gene060998 | MS.gene34028 | 0.816431 | 5.55E-52 | -1.69E-46 |
| MS.gene061002 | MS.gene34028 | 0.823776 | 1.15E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34028.t1 | MTR_1g095360 | 96.220 | 873 | 30 | 1 | 1 | 870 | 1 | 873 | 0.0 | 1756 |
| MS.gene34028.t1 | MTR_1g095360 | 92.325 | 873 | 29 | 2 | 1 | 870 | 1 | 838 | 0.0 | 1668 |
| MS.gene34028.t1 | MTR_0735s0010 | 76.471 | 102 | 21 | 1 | 1 | 99 | 1 | 102 | 2.10e-44 | 156 |
| MS.gene34028.t1 | MTR_3g070290 | 30.266 | 413 | 214 | 11 | 492 | 854 | 192 | 580 | 1.17e-43 | 168 |
| MS.gene34028.t1 | MTR_3g467000 | 30.266 | 413 | 214 | 12 | 492 | 854 | 191 | 579 | 2.33e-43 | 167 |
| MS.gene34028.t1 | MTR_3g076770 | 30.966 | 352 | 205 | 8 | 532 | 854 | 240 | 582 | 5.70e-41 | 160 |
| MS.gene34028.t1 | MTR_1g114520 | 29.551 | 423 | 219 | 11 | 490 | 866 | 156 | 545 | 1.96e-34 | 139 |
| MS.gene34028.t1 | MTR_1g033480 | 31.250 | 256 | 106 | 10 | 80 | 328 | 71 | 263 | 2.47e-22 | 98.2 |
| MS.gene34028.t1 | MTR_7g011400 | 27.869 | 183 | 128 | 3 | 688 | 869 | 60 | 239 | 1.65e-13 | 72.0 |
| MS.gene34028.t1 | MTR_4g076520 | 27.083 | 192 | 135 | 5 | 669 | 859 | 360 | 547 | 8.41e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34028.t1 | AT2G28880 | 60.964 | 871 | 299 | 6 | 38 | 869 | 44 | 912 | 0.0 | 1056 |
| MS.gene34028.t1 | AT2G29690 | 30.976 | 410 | 239 | 10 | 492 | 866 | 198 | 598 | 3.07e-45 | 173 |
| MS.gene34028.t1 | AT3G55870 | 30.446 | 404 | 230 | 11 | 490 | 854 | 74 | 465 | 1.21e-40 | 157 |
| MS.gene34028.t1 | AT5G05730 | 29.833 | 419 | 232 | 12 | 480 | 854 | 173 | 573 | 4.32e-40 | 157 |
| MS.gene34028.t1 | AT3G55870 | 30.446 | 404 | 230 | 11 | 490 | 854 | 173 | 564 | 5.38e-40 | 157 |
| MS.gene34028.t1 | AT5G05730 | 29.148 | 446 | 229 | 14 | 480 | 854 | 173 | 602 | 7.63e-39 | 154 |
| MS.gene34028.t1 | AT2G29690 | 29.747 | 316 | 196 | 10 | 492 | 790 | 198 | 504 | 2.38e-29 | 123 |
| MS.gene34028.t1 | AT3G55870 | 29.245 | 318 | 193 | 10 | 490 | 787 | 173 | 478 | 1.84e-25 | 111 |
| MS.gene34028.t1 | AT5G57890 | 31.225 | 253 | 110 | 9 | 80 | 328 | 73 | 265 | 1.02e-22 | 99.4 |
| MS.gene34028.t1 | AT1G25220 | 31.225 | 253 | 110 | 9 | 80 | 328 | 76 | 268 | 1.09e-22 | 99.4 |
| MS.gene34028.t1 | AT1G25155 | 30.830 | 253 | 111 | 9 | 80 | 328 | 22 | 214 | 5.98e-22 | 95.9 |
| MS.gene34028.t1 | AT1G25083 | 30.830 | 253 | 111 | 9 | 80 | 328 | 22 | 214 | 5.98e-22 | 95.9 |
| MS.gene34028.t1 | AT1G24909 | 30.830 | 253 | 111 | 9 | 80 | 328 | 22 | 214 | 5.98e-22 | 95.9 |
| MS.gene34028.t1 | AT1G25220 | 30.189 | 265 | 110 | 10 | 80 | 328 | 76 | 281 | 1.85e-20 | 93.2 |
| MS.gene34028.t1 | AT1G24807 | 29.811 | 265 | 111 | 10 | 80 | 328 | 22 | 227 | 8.31e-20 | 90.1 |
| MS.gene34028.t1 | AT1G74710 | 28.796 | 191 | 131 | 4 | 669 | 858 | 363 | 549 | 2.99e-13 | 73.9 |
| MS.gene34028.t1 | AT1G74710 | 28.571 | 203 | 139 | 5 | 669 | 870 | 363 | 560 | 4.09e-13 | 73.6 |
| MS.gene34028.t1 | AT1G18870 | 29.143 | 175 | 120 | 4 | 685 | 858 | 373 | 544 | 5.19e-13 | 73.2 |
| MS.gene34028.t1 | AT1G18870 | 29.651 | 172 | 117 | 4 | 688 | 858 | 326 | 494 | 6.37e-13 | 72.8 |
Find 191 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAATCGGTTTCCTTATC+TGG | 0.083920 | 1.4:-74142511 | None:intergenic |
| AAATGATGATGTTTATTTAT+TGG | 0.138927 | 1.4:+74142250 | MS.gene34028:CDS |
| AATAGGACACTTCCATTTAT+TGG | 0.140688 | 1.4:+74138684 | MS.gene34028:CDS |
| ATCTCTTCGTATTCGTCTTC+TGG | 0.192553 | 1.4:-74143411 | None:intergenic |
| GAGAGATTACAGATGATTAT+TGG | 0.221662 | 1.4:+74139041 | MS.gene34028:CDS |
| ATGCAGGGATATTCCTATTC+TGG | 0.268177 | 1.4:+74136156 | MS.gene34028:CDS |
| GCTAGAAGCTAAGCCCATTA+AGG | 0.273961 | 1.4:+74142676 | MS.gene34028:CDS |
| TTCTGTCAAAACAATATTCT+TGG | 0.274266 | 1.4:+74140396 | MS.gene34028:CDS |
| TAGAAATGCAGGGGTTCTTA+TGG | 0.283438 | 1.4:+74138827 | MS.gene34028:CDS |
| ACGAGCTATAGTACCCTTAA+TGG | 0.290221 | 1.4:-74142690 | None:intergenic |
| ATTTATTGGATCCGAGGTTT+TGG | 0.298084 | 1.4:+74138698 | MS.gene34028:CDS |
| CTATTTGAAGTCCATGCTAT+TGG | 0.298195 | 1.4:-74138666 | None:intergenic |
| GACACTTCTTAACATCTCTA+AGG | 0.313097 | 1.4:-74142442 | None:intergenic |
| GAACTTCCGTTTCCTGCTTC+AGG | 0.314406 | 1.4:-74138780 | None:intergenic |
| ATACCTTCTGGTAGAAATTC+TGG | 0.316634 | 1.4:+74137364 | MS.gene34028:CDS |
| TGATTCTCACCTATATCTTC+TGG | 0.321594 | 1.4:-74135140 | None:intergenic |
| AAAACCTCGGATCCAATAAA+TGG | 0.325149 | 1.4:-74138696 | None:intergenic |
| CAGAATCTTCCAGTGATAAA+TGG | 0.331158 | 1.4:-74140369 | None:intergenic |
| AGTATATTCTGTCAGTTGTT+TGG | 0.333061 | 1.4:+74139767 | MS.gene34028:CDS |
| TCTCTTCGTATTCGTCTTCT+GGG | 0.362497 | 1.4:-74143410 | None:intergenic |
| GAGAAGCTTCTGAGCTTAAC+TGG | 0.362909 | 1.4:+74142323 | MS.gene34028:CDS |
| CAATAGCATGGACTTCAAAT+AGG | 0.365417 | 1.4:+74138667 | MS.gene34028:CDS |
| AGTTCAAGCCTTGTTGACTA+TGG | 0.367257 | 1.4:+74138798 | MS.gene34028:CDS |
| ACAAAACTTTGAAGTTGAAA+TGG | 0.368700 | 1.4:+74139702 | MS.gene34028:CDS |
| AACCCTTGCCAAGGAGGGTC+TGG | 0.379775 | 1.4:-74134406 | None:intergenic |
| TGGTAGAAATTCTGGTTTCA+AGG | 0.385639 | 1.4:+74137372 | MS.gene34028:CDS |
| AGGAAGCTGAAAACACCTTT+TGG | 0.386030 | 1.4:+74139792 | MS.gene34028:CDS |
| ATTGAGGTATTAAATTCTCT+TGG | 0.386994 | 1.4:+74142527 | MS.gene34028:CDS |
| CTCAATCGGTTTCCTTATCT+GGG | 0.387674 | 1.4:-74142510 | None:intergenic |
| GCTATTGGAATGAGCACTTC+AGG | 0.390822 | 1.4:-74138651 | None:intergenic |
| TTCAAGTATTTCACAATGGT+TGG | 0.390964 | 1.4:+74142289 | MS.gene34028:CDS |
| CCCTGAGAGGTTCCTGCAGT+TGG | 0.400432 | 1.4:+74142640 | MS.gene34028:CDS |
| TAATCTATCACAGTGTTTGC+TGG | 0.401931 | 1.4:-74143453 | None:intergenic |
| TGTGTCAAAGCTGCATTTCC+TGG | 0.402597 | 1.4:+74143183 | MS.gene34028:CDS |
| AGAGAATTTAATACCTCAAT+CGG | 0.403042 | 1.4:-74142524 | None:intergenic |
| TGGCAGGTTGCAACACTCTC+TGG | 0.403170 | 1.4:-74138992 | None:intergenic |
| ATGATTATTGGCTGAGATGT+AGG | 0.404436 | 1.4:+74139053 | MS.gene34028:CDS |
| CTAAATGGTCATGCATCAAT+TGG | 0.405593 | 1.4:-74134491 | None:intergenic |
| TTTGGAAGCAGTTAACGTTC+AGG | 0.409857 | 1.4:+74140125 | MS.gene34028:CDS |
| TTCAAATATTGCGTGAATGC+AGG | 0.416800 | 1.4:+74136140 | MS.gene34028:CDS |
| AGGAAATTTGATCACTTGGC+TGG | 0.419221 | 1.4:+74139725 | MS.gene34028:CDS |
| TTTACCTACATTTAAGAGAA+AGG | 0.420459 | 1.4:+74142552 | MS.gene34028:CDS |
| CCCGTGGTTTGATAGGCATT+GGG | 0.423040 | 1.4:+74137103 | MS.gene34028:intron |
| CTAGAAGCTAAGCCCATTAA+GGG | 0.423824 | 1.4:+74142677 | MS.gene34028:CDS |
| AATTGCCCCTCCAGCTCCTA+TGG | 0.425604 | 1.4:-74143373 | None:intergenic |
| TTTCCTGGTGGTTCGATGAC+AGG | 0.425849 | 1.4:+74143198 | MS.gene34028:CDS |
| AGTTCCATTGATCTCAACTT+TGG | 0.425932 | 1.4:-74143225 | None:intergenic |
| TCCAACTGCAGGAACCTCTC+AGG | 0.428773 | 1.4:-74142641 | None:intergenic |
| TGGTTCTGTGAGGATGGATT+TGG | 0.430243 | 1.4:+74142343 | MS.gene34028:CDS |
| GACCAAGGTCATTTCTTAGA+AGG | 0.440815 | 1.4:-74143038 | None:intergenic |
| CCTATTCTGGGTGTTTGCCT+CGG | 0.440882 | 1.4:+74136169 | MS.gene34028:CDS |
| TGTCCAGACCCTCCTTGGCA+AGG | 0.442463 | 1.4:+74134403 | MS.gene34028:CDS |
| CCGGCATGCCCAGAAGATAT+AGG | 0.443381 | 1.4:+74135131 | MS.gene34028:CDS |
| TGCAGGGATATTCCTATTCT+GGG | 0.444432 | 1.4:+74136157 | MS.gene34028:CDS |
| TACCTCAGACGCCCGTGAAC+TGG | 0.444477 | 1.4:-74137163 | None:intergenic |
| TTAGAAGGTCAACAATCATC+AGG | 0.447823 | 1.4:-74143023 | None:intergenic |
| GATTCCTTTCTCTTAAATGT+AGG | 0.447911 | 1.4:-74142556 | None:intergenic |
| CTTGGTCGTGTATGTGATCC+TGG | 0.449044 | 1.4:+74143054 | MS.gene34028:CDS |
| TATAGTGATGGGAGTTCAAA+AGG | 0.451018 | 1.4:+74140340 | MS.gene34028:intron |
| CGAGCTATAGTACCCTTAAT+GGG | 0.451531 | 1.4:-74142689 | None:intergenic |
| GATTCTCACCTATATCTTCT+GGG | 0.451656 | 1.4:-74135139 | None:intergenic |
| CAAATACACAGATCTTCCTT+TGG | 0.452881 | 1.4:-74142608 | None:intergenic |
| GTCCAGACCCTCCTTGGCAA+GGG | 0.458237 | 1.4:+74134404 | MS.gene34028:CDS |
| GGCATCTACTCAGGCTGCAT+TGG | 0.460246 | 1.4:+74143276 | MS.gene34028:CDS |
| GAATATTTGACTTCCGTGGC+AGG | 0.463423 | 1.4:-74139008 | None:intergenic |
| ATCACCTGGACCTGGTTCTC+CGG | 0.463700 | 1.4:+74135112 | MS.gene34028:CDS |
| CAGGACCTATCTATTATTAA+CGG | 0.464286 | 1.4:+74134621 | MS.gene34028:CDS |
| TGACACCACATTCAACTTTG+AGG | 0.465437 | 1.4:-74142151 | None:intergenic |
| AGAAATGCAGGGGTTCTTAT+GGG | 0.469281 | 1.4:+74138828 | MS.gene34028:CDS |
| TGTTGACGTGCCGCATCTCA+TGG | 0.470293 | 1.4:+74143080 | MS.gene34028:CDS |
| TGCGGCACGTCAACAGATCC+AGG | 0.484263 | 1.4:-74143072 | None:intergenic |
| ACAAGTGCCTCTACAAAAGC+AGG | 0.484896 | 1.4:+74134542 | MS.gene34028:CDS |
| CTTAACTGGTTCTGTGAGGA+TGG | 0.485235 | 1.4:+74142337 | MS.gene34028:CDS |
| AAATTCAGCCAAGCCGCATA+AGG | 0.485476 | 1.4:-74142584 | None:intergenic |
| AGCCAAGCCGCATAAGGTGC+TGG | 0.493373 | 1.4:-74142578 | None:intergenic |
| TCAAATTGAAATTACAGCTC+AGG | 0.495889 | 1.4:+74142741 | MS.gene34028:CDS |
| CCGAGGCAAACACCCAGAAT+AGG | 0.495918 | 1.4:-74136169 | None:intergenic |
| TCTGGGCATGCCGGAGAACC+AGG | 0.496218 | 1.4:-74135122 | None:intergenic |
| CACTTGGCTGGGCAAGTTGG+TGG | 0.497533 | 1.4:+74139737 | MS.gene34028:CDS |
| CGCACCAAAGTTGAGATCAA+TGG | 0.499946 | 1.4:+74143221 | MS.gene34028:CDS |
| CCTATATCTTCTGGGCATGC+CGG | 0.500977 | 1.4:-74135131 | None:intergenic |
| TCAATCATATCGTTATGATA+AGG | 0.501529 | 1.4:+74141208 | MS.gene34028:CDS |
| CATTCTACAAGGCCACACTA+TGG | 0.502130 | 1.4:+74138858 | MS.gene34028:CDS |
| CATGCCGGAGAACCAGGTCC+AGG | 0.506647 | 1.4:-74135116 | None:intergenic |
| GGGTGTTTGCCTCGGACACC+AGG | 0.507562 | 1.4:+74136177 | MS.gene34028:CDS |
| ATTCTGTCAGTTGTTTGGAC+AGG | 0.509319 | 1.4:+74139772 | MS.gene34028:CDS |
| AGAGGTTCCTGCAGTTGGAT+AGG | 0.511649 | 1.4:+74142645 | MS.gene34028:CDS |
| ATCCAGCACCTTATGCGGCT+TGG | 0.512005 | 1.4:+74142576 | MS.gene34028:CDS |
| GGAAATTTGATCACTTGGCT+GGG | 0.513958 | 1.4:+74139726 | MS.gene34028:CDS |
| ATGGAGGAAATTTGATCACT+TGG | 0.515760 | 1.4:+74139721 | MS.gene34028:CDS |
| TATCCGCCGTGAAAATCAAA+TGG | 0.517625 | 1.4:-74141248 | None:intergenic |
| TATGGACAAACTAGAAATGC+AGG | 0.525839 | 1.4:+74138816 | MS.gene34028:CDS |
| TGGTGATTCAAAATGATGAT+TGG | 0.526558 | 1.4:+74135030 | MS.gene34028:CDS |
| GGTGAAGCTTCCATAGGAGC+TGG | 0.526688 | 1.4:+74143363 | MS.gene34028:CDS |
| GCGGATATGTTGGTTACATC+GGG | 0.526889 | 1.4:+74141264 | MS.gene34028:CDS |
| GTCAAAACAATATTCTTGGA+AGG | 0.539340 | 1.4:+74140400 | MS.gene34028:CDS |
| GGATAGTTCTTCCACAGAGA+TGG | 0.539959 | 1.4:+74139817 | MS.gene34028:CDS |
| TCAAATATTGCGTGAATGCA+GGG | 0.540876 | 1.4:+74136141 | MS.gene34028:CDS |
| CGTTAATAATAGATAGGTCC+TGG | 0.541535 | 1.4:-74134620 | None:intergenic |
| GAGGAAAAGGTGGATCACTT+TGG | 0.543864 | 1.4:+74140107 | MS.gene34028:CDS |
| GATCACTTGGCTGGGCAAGT+TGG | 0.544459 | 1.4:+74139734 | MS.gene34028:CDS |
| CGTGAACTGGTTCAGATGCA+TGG | 0.546538 | 1.4:-74137150 | None:intergenic |
| CATGCATCTGAACCAGTTCA+CGG | 0.547761 | 1.4:+74137151 | MS.gene34028:CDS |
| TGATTATTGGCTGAGATGTA+GGG | 0.548614 | 1.4:+74139054 | MS.gene34028:CDS |
| TGTCTAAACTATATTAGAGA+TGG | 0.549780 | 1.4:+74142461 | MS.gene34028:CDS |
| TACCACCGTTAATAATAGAT+AGG | 0.551799 | 1.4:-74134626 | None:intergenic |
| GGAAAACGTGCTAATTCTGA+TGG | 0.553406 | 1.4:+74139091 | MS.gene34028:CDS |
| GGAAGAACTATCCAACCAAA+AGG | 0.553464 | 1.4:-74139807 | None:intergenic |
| ATGCATCTGAACCAGTTCAC+GGG | 0.555574 | 1.4:+74137152 | MS.gene34028:CDS |
| GAGAGTGTTGCAACCTGCCA+CGG | 0.555850 | 1.4:+74138995 | MS.gene34028:CDS |
| TGTGCCTCACAACCCAGATA+AGG | 0.555986 | 1.4:+74142498 | MS.gene34028:CDS |
| CCAACTGCAGGAACCTCTCA+GGG | 0.556382 | 1.4:-74142640 | None:intergenic |
| AAAACAATATTCTTGGAAGG+AGG | 0.557570 | 1.4:+74140403 | MS.gene34028:CDS |
| GGCGGATATGTTGGTTACAT+CGG | 0.559365 | 1.4:+74141263 | MS.gene34028:CDS |
| CGTTCAGGTTGTCTGATCAG+AGG | 0.561324 | 1.4:+74140140 | MS.gene34028:CDS |
| GACATATGAGACGCAAAGAC+AGG | 0.561457 | 1.4:-74134347 | None:intergenic |
| AGGTGGTGGCCATTTATCAC+TGG | 0.563009 | 1.4:+74140360 | MS.gene34028:CDS |
| CTGTGAGGATGGATTTGGAA+AGG | 0.565191 | 1.4:+74142348 | MS.gene34028:CDS |
| TGTTCTCGAGGCATCTACTC+AGG | 0.566022 | 1.4:+74143267 | MS.gene34028:CDS |
| GCAGTGAAGTTGAGCACAAT+GGG | 0.566135 | 1.4:+74137323 | MS.gene34028:intron |
| TCGTTCATGGGAGGAAAAGG+TGG | 0.567570 | 1.4:+74140097 | MS.gene34028:CDS |
| CCAGATAAGGAAACCGATTG+AGG | 0.569130 | 1.4:+74142511 | MS.gene34028:CDS |
| AAACCAGAATTTCTACCAGA+AGG | 0.570639 | 1.4:-74137367 | None:intergenic |
| AACCAGTTCACGGGCGTCTG+AGG | 0.571689 | 1.4:+74137161 | MS.gene34028:CDS |
| AAGTGCTCATTCCAATAGCA+TGG | 0.571695 | 1.4:+74138655 | MS.gene34028:CDS |
| TCTCTTGAAAGTTGTTCTCG+AGG | 0.572344 | 1.4:+74143255 | MS.gene34028:CDS |
| AAGGCCACACTATGGTGTGC+AGG | 0.572554 | 1.4:+74138866 | MS.gene34028:CDS |
| TATGATAAGGATGAATATGA+AGG | 0.576693 | 1.4:+74141221 | MS.gene34028:CDS |
| AAACTTTGAAGTTGAAATGG+AGG | 0.579267 | 1.4:+74139705 | MS.gene34028:CDS |
| GATGTATGTAATCGCCGCGA+TGG | 0.582991 | 1.4:+74134447 | MS.gene34028:CDS |
| AGCTTCCATAGGAGCTGGAG+GGG | 0.583104 | 1.4:+74143368 | MS.gene34028:CDS |
| GCGCCTGTCATCGAACCACC+AGG | 0.583166 | 1.4:-74143201 | None:intergenic |
| TTTGCTGTTCTTCCCCTGAG+AGG | 0.583316 | 1.4:+74142627 | MS.gene34028:CDS |
| TATCACTCCTATCCAACTGC+AGG | 0.588529 | 1.4:-74142652 | None:intergenic |
| TCTTGAATATTTGACTTCCG+TGG | 0.593391 | 1.4:-74139012 | None:intergenic |
| GGTGGTTCGATATCATTCGC+TGG | 0.593671 | 1.4:+74138608 | MS.gene34028:intron |
| ACTTCCATTTATTGGATCCG+AGG | 0.593929 | 1.4:+74138692 | MS.gene34028:CDS |
| TTATCACTGGAAGATTCTGA+AGG | 0.594083 | 1.4:+74140373 | MS.gene34028:CDS |
| AAGAACAGTTGTTATACATG+AGG | 0.596678 | 1.4:+74143341 | MS.gene34028:CDS |
| GTTTCCTTATCTGGGTTGTG+AGG | 0.596872 | 1.4:-74142502 | None:intergenic |
| ACTTTCTTTAGCACATGCGC+AGG | 0.598971 | 1.4:+74139622 | MS.gene34028:intron |
| TTCAAAATGATGATTGGACG+TGG | 0.599788 | 1.4:+74135036 | MS.gene34028:CDS |
| TAGTTTGTCCATAGTCAACA+AGG | 0.602079 | 1.4:-74138806 | None:intergenic |
| TAGGCATTGGGTTATGTGCA+TGG | 0.603761 | 1.4:+74137115 | MS.gene34028:intron |
| AGCTCGTGGTGCTACTGAGG+AGG | 0.604636 | 1.4:+74142706 | MS.gene34028:CDS |
| GATGGGAGTTCAAAAGGTGG+TGG | 0.606255 | 1.4:+74140346 | MS.gene34028:CDS |
| GACCTTCTAAGAAATGACCT+TGG | 0.607144 | 1.4:+74143036 | MS.gene34028:CDS |
| CATGAGGGTGAAGCTTCCAT+AGG | 0.610810 | 1.4:+74143357 | MS.gene34028:CDS |
| AGTGATGGGAGTTCAAAAGG+TGG | 0.612943 | 1.4:+74140343 | MS.gene34028:intron |
| CAATGGTGAGTACAATTCGT+GGG | 0.615391 | 1.4:+74143130 | MS.gene34028:CDS |
| CAAGAAACCCTTGCCAAGGA+GGG | 0.615672 | 1.4:-74134411 | None:intergenic |
| ACAATGGTGAGTACAATTCG+TGG | 0.620395 | 1.4:+74143129 | MS.gene34028:CDS |
| GATAACATCGTATTATCACC+TGG | 0.621106 | 1.4:+74135098 | MS.gene34028:CDS |
| GCCGCGATGGAAGAAACACT+AGG | 0.622994 | 1.4:+74134460 | MS.gene34028:CDS |
| AAAGTTCAAGTATTTCACAA+TGG | 0.623372 | 1.4:+74142285 | MS.gene34028:CDS |
| TATAGCTCGTGGTGCTACTG+AGG | 0.623391 | 1.4:+74142703 | MS.gene34028:CDS |
| ACAAGAAACCCTTGCCAAGG+AGG | 0.625497 | 1.4:-74134412 | None:intergenic |
| GAAGCTTCCATAGGAGCTGG+AGG | 0.628682 | 1.4:+74143366 | MS.gene34028:CDS |
| GTCAAAGCTGCATTTCCTGG+TGG | 0.629738 | 1.4:+74143186 | MS.gene34028:CDS |
| GAAACAAGAAACCCTTGCCA+AGG | 0.630796 | 1.4:-74134415 | None:intergenic |
| AGAACAGTTGTTATACATGA+GGG | 0.631663 | 1.4:+74143342 | MS.gene34028:CDS |
| AAGGAATCCAGCACCTTATG+CGG | 0.632251 | 1.4:+74142571 | MS.gene34028:CDS |
| AGGGAAATACCTGGTGTCCG+AGG | 0.634630 | 1.4:-74136186 | None:intergenic |
| AAGCTTCCATAGGAGCTGGA+GGG | 0.638739 | 1.4:+74143367 | MS.gene34028:CDS |
| TGGGAGTCAAGCATTCTACA+AGG | 0.640874 | 1.4:+74138847 | MS.gene34028:CDS |
| AACACCTGCACACCATAGTG+TGG | 0.641639 | 1.4:-74138870 | None:intergenic |
| ACAATGGTTGGATGATACTG+AGG | 0.643513 | 1.4:+74142301 | MS.gene34028:CDS |
| CCGCGATGGAAGAAACACTA+GGG | 0.646235 | 1.4:+74134461 | MS.gene34028:CDS |
| ATGGACAAACTAGAAATGCA+GGG | 0.648256 | 1.4:+74138817 | MS.gene34028:CDS |
| TTTCAGTGAAAAGGATCAGG+CGG | 0.648387 | 1.4:+74142996 | MS.gene34028:intron |
| ATCGTATTATCACCTGGACC+TGG | 0.649380 | 1.4:+74135104 | MS.gene34028:CDS |
| ATTGTACTTGTCCAAAACCT+CGG | 0.653172 | 1.4:-74138709 | None:intergenic |
| ATGTAGGGCATCATACAACA+AGG | 0.653248 | 1.4:+74139069 | MS.gene34028:CDS |
| TGCAGTGAAGTTGAGCACAA+TGG | 0.654882 | 1.4:+74137322 | MS.gene34028:intron |
| CCCTAGTGTTTCTTCCATCG+CGG | 0.655752 | 1.4:-74134461 | None:intergenic |
| CAAGTGCCTCTACAAAAGCA+GGG | 0.657382 | 1.4:+74134543 | MS.gene34028:CDS |
| TGAGCTTAACTGGTTCTGTG+AGG | 0.664892 | 1.4:+74142333 | MS.gene34028:CDS |
| ATATGCAACTGTTCACACAA+TGG | 0.665606 | 1.4:+74143113 | MS.gene34028:CDS |
| ATTAAGGGTACTATAGCTCG+TGG | 0.669637 | 1.4:+74142692 | MS.gene34028:CDS |
| GATTGTACTTCCATGAGATG+CGG | 0.673089 | 1.4:-74143090 | None:intergenic |
| TCATATAGATACCATCTCTG+TGG | 0.674627 | 1.4:-74139828 | None:intergenic |
| TGCGAAACCAGCCTTATGTG+AGG | 0.675505 | 1.4:-74142396 | None:intergenic |
| GACCTATCTATTATTAACGG+TGG | 0.686149 | 1.4:+74134624 | MS.gene34028:CDS |
| TTATACATACAATATATACC+AGG | 0.694546 | 1.4:+74134602 | MS.gene34028:CDS |
| TGGACAAACTAGAAATGCAG+GGG | 0.701563 | 1.4:+74138818 | MS.gene34028:CDS |
| TTTAGTACATAATAATACTG+AGG | 0.714422 | 1.4:+74139673 | MS.gene34028:CDS |
| CAACTGCAGGAACCTCTCAG+GGG | 0.714797 | 1.4:-74142639 | None:intergenic |
| CAGGATCACATACACGACCA+AGG | 0.715599 | 1.4:-74143053 | None:intergenic |
| TATGACCTCAAAGTTGAATG+TGG | 0.722703 | 1.4:+74142146 | MS.gene34028:CDS |
| TGTAGGGCATCATACAACAA+GGG | 0.725500 | 1.4:+74139070 | MS.gene34028:CDS |
| TCAAAATGATGATTGGACGT+GGG | 0.727524 | 1.4:+74135037 | MS.gene34028:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 74134342 | 74143482 | 74134342 | ID=MS.gene34028 |
| chr1.4 | mRNA | 74134342 | 74143482 | 74134342 | ID=MS.gene34028.t1;Parent=MS.gene34028 |
| chr1.4 | exon | 74134342 | 74134645 | 74134342 | ID=MS.gene34028.t1.exon1;Parent=MS.gene34028.t1 |
| chr1.4 | CDS | 74134342 | 74134645 | 74134342 | ID=cds.MS.gene34028.t1;Parent=MS.gene34028.t1 |
| chr1.4 | exon | 74135021 | 74135152 | 74135021 | ID=MS.gene34028.t1.exon2;Parent=MS.gene34028.t1 |
| chr1.4 | CDS | 74135021 | 74135152 | 74135021 | ID=cds.MS.gene34028.t1;Parent=MS.gene34028.t1 |
| chr1.4 | exon | 74136131 | 74136198 | 74136131 | ID=MS.gene34028.t1.exon3;Parent=MS.gene34028.t1 |
| chr1.4 | CDS | 74136131 | 74136198 | 74136131 | ID=cds.MS.gene34028.t1;Parent=MS.gene34028.t1 |
| chr1.4 | exon | 74137118 | 74137182 | 74137118 | ID=MS.gene34028.t1.exon4;Parent=MS.gene34028.t1 |
| chr1.4 | CDS | 74137118 | 74137182 | 74137118 | ID=cds.MS.gene34028.t1;Parent=MS.gene34028.t1 |
| chr1.4 | exon | 74137327 | 74137393 | 74137327 | ID=MS.gene34028.t1.exon5;Parent=MS.gene34028.t1 |
| chr1.4 | CDS | 74137327 | 74137393 | 74137327 | ID=cds.MS.gene34028.t1;Parent=MS.gene34028.t1 |
| chr1.4 | exon | 74138609 | 74138887 | 74138609 | ID=MS.gene34028.t1.exon6;Parent=MS.gene34028.t1 |
| chr1.4 | CDS | 74138609 | 74138887 | 74138609 | ID=cds.MS.gene34028.t1;Parent=MS.gene34028.t1 |
| chr1.4 | exon | 74138986 | 74139112 | 74138986 | ID=MS.gene34028.t1.exon7;Parent=MS.gene34028.t1 |
| chr1.4 | CDS | 74138986 | 74139112 | 74138986 | ID=cds.MS.gene34028.t1;Parent=MS.gene34028.t1 |
| chr1.4 | exon | 74139633 | 74139838 | 74139633 | ID=MS.gene34028.t1.exon8;Parent=MS.gene34028.t1 |
| chr1.4 | CDS | 74139633 | 74139838 | 74139633 | ID=cds.MS.gene34028.t1;Parent=MS.gene34028.t1 |
| chr1.4 | exon | 74140082 | 74140161 | 74140082 | ID=MS.gene34028.t1.exon9;Parent=MS.gene34028.t1 |
| chr1.4 | CDS | 74140082 | 74140161 | 74140082 | ID=cds.MS.gene34028.t1;Parent=MS.gene34028.t1 |
| chr1.4 | exon | 74140345 | 74140447 | 74140345 | ID=MS.gene34028.t1.exon10;Parent=MS.gene34028.t1 |
| chr1.4 | CDS | 74140345 | 74140447 | 74140345 | ID=cds.MS.gene34028.t1;Parent=MS.gene34028.t1 |
| chr1.4 | exon | 74141203 | 74141285 | 74141203 | ID=MS.gene34028.t1.exon11;Parent=MS.gene34028.t1 |
| chr1.4 | CDS | 74141203 | 74141285 | 74141203 | ID=cds.MS.gene34028.t1;Parent=MS.gene34028.t1 |
| chr1.4 | exon | 74142145 | 74142762 | 74142145 | ID=MS.gene34028.t1.exon12;Parent=MS.gene34028.t1 |
| chr1.4 | CDS | 74142145 | 74142762 | 74142145 | ID=cds.MS.gene34028.t1;Parent=MS.gene34028.t1 |
| chr1.4 | exon | 74143002 | 74143482 | 74143002 | ID=MS.gene34028.t1.exon13;Parent=MS.gene34028.t1 |
| chr1.4 | CDS | 74143002 | 74143482 | 74143002 | ID=cds.MS.gene34028.t1;Parent=MS.gene34028.t1 |
| Gene Sequence |
| Protein sequence |
