Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34195.t1 | XP_003604108.2 | 99.8 | 525 | 1 | 0 | 1 | 525 | 1185 | 1709 | 3.70E-284 | 986.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34195.t1 | Q9C5X9 | 83.8 | 526 | 84 | 1 | 1 | 525 | 1172 | 1697 | 1.2e-251 | 870.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34195.t1 | G7JUE4 | 99.8 | 525 | 1 | 0 | 1 | 525 | 1185 | 1709 | 2.7e-284 | 986.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene34195.t1 | TR | TAZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene34195 | 0.82286 | 1.89E-53 | -1.69E-46 |
| MS.gene049452 | MS.gene34195 | 0.801722 | 7.87E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene34195 | 0.804167 | 2.46E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene34195 | 0.862528 | 4.76E-64 | -1.69E-46 |
| MS.gene050654 | MS.gene34195 | 0.805037 | 1.62E-49 | -1.69E-46 |
| MS.gene050941 | MS.gene34195 | 0.806489 | 8.02E-50 | -1.69E-46 |
| MS.gene052118 | MS.gene34195 | 0.804372 | 2.23E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene34195 | 0.817002 | 4.13E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene34195 | 0.824638 | 7.24E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene34195 | 0.822079 | 2.87E-53 | -1.69E-46 |
| MS.gene054892 | MS.gene34195 | 0.802482 | 5.49E-49 | -1.69E-46 |
| MS.gene054893 | MS.gene34195 | 0.800382 | 1.48E-48 | -1.69E-46 |
| MS.gene056699 | MS.gene34195 | 0.804734 | 1.87E-49 | -1.69E-46 |
| MS.gene056779 | MS.gene34195 | 0.802913 | 4.48E-49 | -1.69E-46 |
| MS.gene056825 | MS.gene34195 | 0.816793 | 4.60E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene34195 | 0.822296 | 2.56E-53 | -1.69E-46 |
| MS.gene05690 | MS.gene34195 | 0.801578 | 8.43E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene34195 | 0.811396 | 7.15E-51 | -1.69E-46 |
| MS.gene057155 | MS.gene34195 | 0.829696 | 4.45E-55 | -1.69E-46 |
| MS.gene057208 | MS.gene34195 | 0.80328 | 3.76E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene34195 | 0.842485 | 2.51E-58 | -1.69E-46 |
| MS.gene058009 | MS.gene34195 | 0.839051 | 2.00E-57 | -1.69E-46 |
| MS.gene058081 | MS.gene34195 | 0.802443 | 5.60E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene34195 | 0.813015 | 3.17E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene34195 | 0.811059 | 8.46E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene34195 | -0.801709 | 7.92E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene34195 | 0.837509 | 4.99E-57 | -1.69E-46 |
| MS.gene060932 | MS.gene34195 | 0.818744 | 1.67E-52 | -1.69E-46 |
| MS.gene060933 | MS.gene34195 | 0.824281 | 8.79E-54 | -1.69E-46 |
| MS.gene060935 | MS.gene34195 | 0.865319 | 6.44E-65 | -1.69E-46 |
| MS.gene060937 | MS.gene34195 | 0.872559 | 2.90E-67 | -1.69E-46 |
| MS.gene06121 | MS.gene34195 | 0.80612 | 9.60E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34195.t1 | MTR_4g005050 | 99.810 | 525 | 1 | 0 | 1 | 525 | 1185 | 1709 | 0.0 | 1125 |
| MS.gene34195.t1 | MTR_3g107960 | 49.140 | 523 | 240 | 8 | 1 | 511 | 690 | 1198 | 3.31e-177 | 531 |
| MS.gene34195.t1 | MTR_3g101100 | 49.245 | 530 | 243 | 7 | 1 | 511 | 865 | 1387 | 1.36e-176 | 534 |
| MS.gene34195.t1 | MTR_6g017010 | 47.776 | 517 | 208 | 9 | 1 | 511 | 304 | 764 | 8.54e-165 | 486 |
| MS.gene34195.t1 | MTR_5g085310 | 46.746 | 507 | 211 | 8 | 1 | 503 | 574 | 1025 | 1.83e-156 | 473 |
| MS.gene34195.t1 | MTR_6g017000 | 53.509 | 342 | 148 | 3 | 1 | 341 | 608 | 939 | 1.63e-121 | 379 |
| MS.gene34195.t1 | MTR_5g017020 | 41.814 | 452 | 193 | 8 | 1 | 438 | 130 | 525 | 2.40e-107 | 330 |
| MS.gene34195.t1 | MTR_5g017020 | 42.466 | 438 | 187 | 7 | 1 | 429 | 130 | 511 | 8.10e-107 | 330 |
| MS.gene34195.t1 | MTR_6g017140 | 48.125 | 320 | 136 | 4 | 1 | 317 | 161 | 453 | 1.22e-99 | 308 |
| MS.gene34195.t1 | MTR_6g017120 | 72.826 | 92 | 25 | 0 | 30 | 121 | 8 | 99 | 2.26e-43 | 151 |
| MS.gene34195.t1 | MTR_0299s0030 | 38.608 | 158 | 82 | 2 | 184 | 341 | 157 | 299 | 3.00e-30 | 121 |
| MS.gene34195.t1 | MTR_6g017135 | 75.410 | 61 | 14 | 1 | 1 | 60 | 41 | 101 | 9.27e-23 | 94.7 |
| MS.gene34195.t1 | MTR_5g085317 | 38.235 | 102 | 55 | 2 | 112 | 213 | 1 | 94 | 2.07e-14 | 70.5 |
| MS.gene34195.t1 | MTR_6g017130 | 54.717 | 53 | 24 | 0 | 442 | 494 | 330 | 382 | 2.55e-14 | 75.1 |
| MS.gene34195.t1 | MTR_6g017130 | 46.053 | 76 | 40 | 1 | 288 | 363 | 273 | 347 | 1.06e-12 | 70.1 |
| MS.gene34195.t1 | MTR_5g015680 | 31.915 | 141 | 75 | 5 | 402 | 521 | 134 | 274 | 5.15e-14 | 72.8 |
| MS.gene34195.t1 | MTR_5g015680 | 31.915 | 141 | 75 | 5 | 402 | 521 | 229 | 369 | 5.32e-14 | 73.9 |
| MS.gene34195.t1 | MTR_5g015680 | 31.915 | 141 | 75 | 5 | 402 | 521 | 268 | 408 | 5.36e-14 | 74.3 |
| MS.gene34195.t1 | MTR_1g047930 | 66.667 | 48 | 16 | 0 | 1 | 48 | 327 | 374 | 6.62e-14 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34195.t1 | AT1G79000 | 87.262 | 526 | 66 | 1 | 1 | 525 | 1172 | 1697 | 0.0 | 1011 |
| MS.gene34195.t1 | AT1G79000 | 87.262 | 526 | 66 | 1 | 1 | 525 | 1148 | 1673 | 0.0 | 1010 |
| MS.gene34195.t1 | AT1G79000 | 87.262 | 526 | 66 | 1 | 1 | 525 | 1172 | 1697 | 0.0 | 1010 |
| MS.gene34195.t1 | AT1G16710 | 85.932 | 526 | 73 | 1 | 1 | 525 | 1155 | 1680 | 0.0 | 991 |
| MS.gene34195.t1 | AT1G16710 | 85.932 | 526 | 73 | 1 | 1 | 525 | 1155 | 1680 | 0.0 | 991 |
| MS.gene34195.t1 | AT1G16710 | 85.932 | 526 | 73 | 1 | 1 | 525 | 1181 | 1706 | 0.0 | 991 |
| MS.gene34195.t1 | AT1G16710 | 85.932 | 526 | 73 | 1 | 1 | 525 | 1155 | 1680 | 0.0 | 991 |
| MS.gene34195.t1 | AT1G16710 | 85.932 | 526 | 73 | 1 | 1 | 525 | 1155 | 1680 | 0.0 | 991 |
| MS.gene34195.t1 | AT1G16710 | 85.932 | 526 | 73 | 1 | 1 | 525 | 1152 | 1677 | 0.0 | 990 |
| MS.gene34195.t1 | AT1G16710 | 85.932 | 526 | 73 | 1 | 1 | 525 | 1116 | 1641 | 0.0 | 989 |
| MS.gene34195.t1 | AT1G16710 | 85.932 | 526 | 73 | 1 | 1 | 525 | 1116 | 1641 | 0.0 | 989 |
| MS.gene34195.t1 | AT1G16710 | 85.932 | 526 | 73 | 1 | 1 | 525 | 1116 | 1641 | 0.0 | 989 |
| MS.gene34195.t1 | AT3G12980 | 72.745 | 521 | 135 | 3 | 1 | 521 | 1152 | 1665 | 0.0 | 835 |
| MS.gene34195.t1 | AT3G12980 | 72.745 | 521 | 135 | 3 | 1 | 521 | 1071 | 1584 | 0.0 | 834 |
| MS.gene34195.t1 | AT1G55970 | 67.176 | 524 | 166 | 3 | 1 | 521 | 947 | 1467 | 0.0 | 728 |
| MS.gene34195.t1 | AT1G55970 | 66.985 | 524 | 153 | 4 | 1 | 521 | 947 | 1453 | 0.0 | 720 |
| MS.gene34195.t1 | AT1G16710 | 84.615 | 286 | 44 | 0 | 1 | 286 | 1155 | 1440 | 3.63e-178 | 540 |
| MS.gene34195.t1 | AT1G67220 | 43.898 | 508 | 260 | 10 | 1 | 496 | 871 | 1365 | 1.15e-139 | 436 |
| MS.gene34195.t1 | AT5G67480 | 37.719 | 114 | 56 | 4 | 415 | 513 | 242 | 355 | 8.08e-15 | 76.6 |
| MS.gene34195.t1 | AT5G67480 | 37.719 | 114 | 56 | 4 | 415 | 513 | 242 | 355 | 8.08e-15 | 76.6 |
| MS.gene34195.t1 | AT5G67480 | 37.719 | 114 | 56 | 4 | 415 | 513 | 253 | 366 | 9.13e-15 | 76.6 |
Find 111 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCATGTATGTTCAAGAATT+TGG | 0.134747 | 4.3:+89841090 | MS.gene34195:CDS |
| TGGACTCTGTGAAGTATTTC+AGG | 0.197513 | 4.3:+89841160 | MS.gene34195:CDS |
| TCACGAAGCTTATCAGATTT+TGG | 0.205353 | 4.3:-89841490 | None:intergenic |
| CCGGGTGTATCTTTCATATT+TGG | 0.206564 | 4.3:+89841140 | MS.gene34195:CDS |
| CTTTGCGACAATTAGGATAT+TGG | 0.257461 | 4.3:-89845374 | None:intergenic |
| TCTGGTCATTCAGATCTTTC+AGG | 0.275077 | 4.3:+89841890 | MS.gene34195:CDS |
| CTTGAACATACATGCCAAAT+AGG | 0.289625 | 4.3:-89841083 | None:intergenic |
| CAGTAGTCACCATCAAAATA+TGG | 0.290014 | 4.3:-89841755 | None:intergenic |
| GAGATTTAAAAGAACATCTA+AGG | 0.301545 | 4.3:+89845619 | MS.gene34195:intron |
| ATCTTCCTTCATTGGGGAAA+TGG | 0.308244 | 4.3:-89842143 | None:intergenic |
| TAATAAAATCTTCCTTCATT+GGG | 0.314201 | 4.3:-89842150 | None:intergenic |
| CCCTTCACTTTGCGACAATT+AGG | 0.314557 | 4.3:-89845381 | None:intergenic |
| ATAATAAAATCTTCCTTCAT+TGG | 0.325998 | 4.3:-89842151 | None:intergenic |
| TTTGATGGTGACTACTGGCC+TGG | 0.329863 | 4.3:+89841761 | MS.gene34195:CDS |
| ATTTGTTTACCATGAAATTC+TGG | 0.340373 | 4.3:+89841221 | MS.gene34195:CDS |
| CACTGCAAAACACGTGCTTC+TGG | 0.351545 | 4.3:+89845423 | MS.gene34195:CDS |
| TATCACAAATCTCAAAGTTC+TGG | 0.393464 | 4.3:-89842249 | None:intergenic |
| TGCTATCTTGACATAGAAAC+TGG | 0.398566 | 4.3:+89844377 | MS.gene34195:CDS |
| CCCGAGATTAAATCAGTAAC+TGG | 0.403081 | 4.3:+89841183 | MS.gene34195:CDS |
| TTGATGGTGACTACTGGCCT+GGG | 0.408589 | 4.3:+89841762 | MS.gene34195:CDS |
| TAATGGTGTGTGGCAACCGC+TGG | 0.412741 | 4.3:+89842212 | MS.gene34195:CDS |
| TCCAGTTACTGATTTAATCT+CGG | 0.415243 | 4.3:-89841184 | None:intergenic |
| TAGAGATTACCAGAATTTCA+TGG | 0.417253 | 4.3:-89841230 | None:intergenic |
| GGCATTTCTGAGTCTCTGCC+AGG | 0.418301 | 4.3:+89844244 | MS.gene34195:CDS |
| AAGATACACCCGGCGCTGAT+TGG | 0.425839 | 4.3:-89841130 | None:intergenic |
| GGTGTGGAAGTATGCCTATT+TGG | 0.439987 | 4.3:+89841069 | MS.gene34195:CDS |
| TACCCACTGCTGCATTCTAA+TGG | 0.440833 | 4.3:+89842195 | MS.gene34195:CDS |
| AGATACACCCGGCGCTGATT+GGG | 0.442799 | 4.3:-89841129 | None:intergenic |
| TTGGATTATGAAGATGATAT+AGG | 0.448195 | 4.3:-89844322 | None:intergenic |
| AAGACAAGTTCGAGTATTGC+AGG | 0.455363 | 4.3:+89844535 | MS.gene34195:CDS |
| TGAAACCATTTCCCCAATGA+AGG | 0.458347 | 4.3:+89842138 | MS.gene34195:CDS |
| GGATGATTTGTCAACTTATG+AGG | 0.464447 | 4.3:-89844476 | None:intergenic |
| CCAGTTACTGATTTAATCTC+GGG | 0.468057 | 4.3:-89841183 | None:intergenic |
| TTGTTGTTTCAAAAGATTGA+AGG | 0.470521 | 4.3:+89841048 | None:intergenic |
| GCATCGTGGCACATGGCATT+CGG | 0.470789 | 4.3:-89845511 | None:intergenic |
| TCTTTATCCTTTGTATCAGA+TGG | 0.471922 | 4.3:-89844185 | None:intergenic |
| AAAAGGGCTTTAAAAGCATC+TGG | 0.473240 | 4.3:+89841872 | MS.gene34195:CDS |
| ATGGGCTTGTCCTCCGCTGA+AGG | 0.475619 | 4.3:+89841423 | MS.gene34195:CDS |
| AGTGCATACCATGGCGGAAG+AGG | 0.478401 | 4.3:-89845404 | None:intergenic |
| GTCAATTTCCCAATCAGCGC+CGG | 0.480598 | 4.3:+89841121 | MS.gene34195:CDS |
| GACCATCATTGAGGAATGCT+TGG | 0.484060 | 4.3:-89844300 | None:intergenic |
| TCACATCCACCGGTGAATGT+AGG | 0.486162 | 4.3:+89841708 | MS.gene34195:CDS |
| TTACAAGTGGTCACAAATGC+AGG | 0.487921 | 4.3:-89844350 | None:intergenic |
| ACGACGTAGAGCTGCTGTAA+TGG | 0.488083 | 4.3:+89845665 | MS.gene34195:CDS |
| CACATCCACCGGTGAATGTA+GGG | 0.488911 | 4.3:+89841709 | MS.gene34195:CDS |
| ATGCAATTCTTGTTATCAGA+AGG | 0.491361 | 4.3:+89844439 | MS.gene34195:CDS |
| AATGCCATGTGCCACGATGC+AGG | 0.495055 | 4.3:+89845514 | MS.gene34195:CDS |
| GCAGAAGTTGCTAACAATGC+TGG | 0.496892 | 4.3:+89845708 | MS.gene34195:CDS |
| GTCACAAATGCAGGAGCAGT+TGG | 0.501612 | 4.3:-89844341 | None:intergenic |
| GGCAATGTGGAGAACGACAT+TGG | 0.501722 | 4.3:-89845353 | None:intergenic |
| TCCTAATTGTCGCAAAGTGA+AGG | 0.504694 | 4.3:+89845380 | MS.gene34195:CDS |
| CACGGAGCTTACAATATTCA+AGG | 0.504836 | 4.3:-89841381 | None:intergenic |
| GCAATGTGGAGAACGACATT+GGG | 0.515166 | 4.3:-89845352 | None:intergenic |
| GAATTGCATACGTCGTACTC+AGG | 0.517386 | 4.3:-89844425 | None:intergenic |
| AGTAGTCACCATCAAAATAT+GGG | 0.522353 | 4.3:-89841754 | None:intergenic |
| ATCAAATCTTCTGCAGCCCC+AGG | 0.526046 | 4.3:-89841779 | None:intergenic |
| GATCATTTCTTCACATCCAC+CGG | 0.529192 | 4.3:+89841698 | MS.gene34195:CDS |
| CAGCTACGCCAAGAGGAAGA+TGG | 0.531344 | 4.3:+89841806 | MS.gene34195:CDS |
| AACCTTAGCCCTACATTCAC+CGG | 0.533860 | 4.3:-89841717 | None:intergenic |
| GGCCAAGCATTCCTCAATGA+TGG | 0.548250 | 4.3:+89844298 | MS.gene34195:CDS |
| CATACTGATAATGATTTCCC+TGG | 0.548816 | 4.3:-89844262 | None:intergenic |
| CACCGGTGAATGTAGGGCTA+AGG | 0.551581 | 4.3:+89841715 | MS.gene34195:CDS |
| ACAAGCCCATATATAGCAGC+TGG | 0.561087 | 4.3:-89841410 | None:intergenic |
| ATTATCAGTATGATACACTA+AGG | 0.562371 | 4.3:+89844273 | MS.gene34195:CDS |
| AATCTGATAAGCTTCGTGAA+TGG | 0.565500 | 4.3:+89841494 | MS.gene34195:CDS |
| TCAATTTCCCAATCAGCGCC+GGG | 0.567151 | 4.3:+89841122 | MS.gene34195:CDS |
| TCAGTATGATACACTAAGGC+GGG | 0.571150 | 4.3:+89844277 | MS.gene34195:CDS |
| TGATGTACCATCTGATACAA+AGG | 0.572631 | 4.3:+89844178 | MS.gene34195:CDS |
| AATAAAATCTTCCTTCATTG+GGG | 0.573488 | 4.3:-89842149 | None:intergenic |
| TGCAATTCTTGTTATCAGAA+GGG | 0.574636 | 4.3:+89844440 | MS.gene34195:CDS |
| AATGGTGTGTGGCAACCGCT+GGG | 0.577082 | 4.3:+89842213 | MS.gene34195:CDS |
| TGGGCTTGTCCTCCGCTGAA+GGG | 0.583493 | 4.3:+89841424 | MS.gene34195:CDS |
| AAGATAGCATATATTACAAG+TGG | 0.592274 | 4.3:-89844363 | None:intergenic |
| GAAGAAATGATCATATAAGT+TGG | 0.594263 | 4.3:-89841687 | None:intergenic |
| CCTAATTGTCGCAAAGTGAA+GGG | 0.595342 | 4.3:+89845381 | MS.gene34195:CDS |
| AAGACATCCTATTAATCAGA+GGG | 0.595835 | 4.3:+89843764 | MS.gene34195:CDS |
| ACATAGAAACTGGTCAAGGT+TGG | 0.597734 | 4.3:+89844387 | MS.gene34195:CDS |
| GTTTCAAAAGATTGAAGGTG+TGG | 0.600248 | 4.3:+89841053 | None:intergenic |
| AAAGACATCCTATTAATCAG+AGG | 0.602998 | 4.3:+89843763 | MS.gene34195:CDS |
| CAAACCTGCATCGTGGCACA+TGG | 0.608501 | 4.3:-89845518 | None:intergenic |
| GTGAAGGGCCTCTTCCGCCA+TGG | 0.608514 | 4.3:+89845396 | MS.gene34195:CDS |
| ATGATATAGGACCATCATTG+AGG | 0.611897 | 4.3:-89844309 | None:intergenic |
| GTGTTCTTTGCAAGAAAATG+TGG | 0.612830 | 4.3:+89845451 | MS.gene34195:CDS |
| GCATCACGATCCGCCACTGA+CGG | 0.613807 | 4.3:-89844497 | None:intergenic |
| TGATGGTGACTACTGGCCTG+GGG | 0.615661 | 4.3:+89841763 | MS.gene34195:CDS |
| AATTGCATACGTCGTACTCA+GGG | 0.616318 | 4.3:-89844424 | None:intergenic |
| GATTTATCAGCTACGCCAAG+AGG | 0.617034 | 4.3:+89841799 | MS.gene34195:CDS |
| GACAAATCATCCGTCAGTGG+CGG | 0.618413 | 4.3:+89844487 | MS.gene34195:CDS |
| CTTGAATATTGTAAGCTCCG+TGG | 0.620635 | 4.3:+89841382 | MS.gene34195:CDS |
| CCAAATATGAAAGATACACC+CGG | 0.624611 | 4.3:-89841140 | None:intergenic |
| GCATTTCTGAGTCTCTGCCA+GGG | 0.627930 | 4.3:+89844245 | MS.gene34195:CDS |
| TGCAAAACACGTGCTTCTGG+AGG | 0.628439 | 4.3:+89845426 | MS.gene34195:CDS |
| CACCATTAGAATGCAGCAGT+GGG | 0.632812 | 4.3:-89842197 | None:intergenic |
| TAATCTTCACCCTTCAGCGG+AGG | 0.636640 | 4.3:-89841433 | None:intergenic |
| ATCAGTATGATACACTAAGG+CGG | 0.639979 | 4.3:+89844276 | MS.gene34195:CDS |
| TGCTGCATTCTAATGGTGTG+TGG | 0.640132 | 4.3:+89842202 | MS.gene34195:CDS |
| GATGAATTACTTTGTGCATG+AGG | 0.640691 | 4.3:-89841934 | None:intergenic |
| AGCTGCGAAGGAGAATGTTG+TGG | 0.644083 | 4.3:+89841655 | MS.gene34195:CDS |
| ATATAATCTTCACCCTTCAG+CGG | 0.645713 | 4.3:-89841436 | None:intergenic |
| GTTGACAAATCATCCGTCAG+TGG | 0.647856 | 4.3:+89844484 | MS.gene34195:CDS |
| CTTGACATAGAAACTGGTCA+AGG | 0.648457 | 4.3:+89844383 | MS.gene34195:CDS |
| CAATTAGGATATTGGCAATG+TGG | 0.651504 | 4.3:-89845366 | None:intergenic |
| ATTTAAAAGAACATCTAAGG+AGG | 0.654618 | 4.3:+89845622 | MS.gene34195:CDS |
| ACACCATTAGAATGCAGCAG+TGG | 0.656621 | 4.3:-89842198 | None:intergenic |
| AATTCTTGTTATCAGAAGGG+AGG | 0.668232 | 4.3:+89844443 | MS.gene34195:CDS |
| GATTAAATCAGTAACTGGAG+AGG | 0.669996 | 4.3:+89841188 | MS.gene34195:CDS |
| CTTAGCCCTACATTCACCGG+TGG | 0.689664 | 4.3:-89841714 | None:intergenic |
| CTGCTGTAATGGAAATGATG+AGG | 0.691682 | 4.3:+89845676 | MS.gene34195:CDS |
| GGCACTGATTACAAACCCAG+CGG | 0.702687 | 4.3:-89842228 | None:intergenic |
| TATAGCAGCTGGTAAAACCA+CGG | 0.706847 | 4.3:-89841399 | None:intergenic |
| TGGTCCACAAACCTGCATCG+TGG | 0.735678 | 4.3:-89845525 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTGTTATTATGTTT+TGG | + | chr4.3:89845209-89845228 | MS.gene34195:intron | 10.0% |
| !!! | AAGAAGTTTATTTTATTAAT+AGG | - | chr4.3:89843012-89843031 | None:intergenic | 10.0% |
| !!! | ATTTTATGTTACATTATTAA+TGG | + | chr4.3:89845066-89845085 | MS.gene34195:intron | 10.0% |
| !! | AAATAATACATGAGATTATA+TGG | - | chr4.3:89843637-89843656 | None:intergenic | 15.0% |
| !! | AAATATTGTGTATGAAATTA+AGG | - | chr4.3:89843529-89843548 | None:intergenic | 15.0% |
| !! | CAATTAGTTATTACTAATAT+GGG | + | chr4.3:89845128-89845147 | MS.gene34195:intron | 15.0% |
| !! | TATTATTATTAAATGTTGTG+TGG | - | chr4.3:89842979-89842998 | None:intergenic | 15.0% |
| !! | TCAATTAGTTATTACTAATA+TGG | + | chr4.3:89845127-89845146 | MS.gene34195:intron | 15.0% |
| !!! | ACAAATATTTTTAAGCAATT+TGG | + | chr4.3:89841976-89841995 | MS.gene34195:intron | 15.0% |
| !!! | GTATTTATGTTTCTTTTATT+TGG | + | chr4.3:89843101-89843120 | MS.gene34195:intron | 15.0% |
| !!! | GTTTTAATTTTTTTTTTCCT+GGG | + | chr4.3:89842055-89842074 | MS.gene34195:intron | 15.0% |
| !!! | TGGCTATTATATTTTTATTT+TGG | + | chr4.3:89842619-89842638 | MS.gene34195:intron | 15.0% |
| !! | ATAATAAAATCTTCCTTCAT+TGG | - | chr4.3:89842154-89842173 | None:intergenic | 20.0% |
| !! | CAAAAAAACTATCACAAAAA+GGG | + | chr4.3:89841856-89841875 | MS.gene34195:CDS | 20.0% |
| !! | CAGAAATATAAATTTAGCAT+AGG | - | chr4.3:89842925-89842944 | None:intergenic | 20.0% |
| !! | GGAAGAAAACAAAATAAAAA+AGG | + | chr4.3:89841827-89841846 | MS.gene34195:CDS | 20.0% |
| !! | TAATAAAATCTTCCTTCATT+GGG | - | chr4.3:89842153-89842172 | None:intergenic | 20.0% |
| !! | TATCAATAACTGTCATAAAA+TGG | + | chr4.3:89844977-89844996 | MS.gene34195:intron | 20.0% |
| !! | TTAATATTAAATCATTGCCT+TGG | + | chr4.3:89842495-89842514 | MS.gene34195:intron | 20.0% |
| !! | TTATTACTAACAATACCTAA+CGG | + | chr4.3:89843030-89843049 | MS.gene34195:intron | 20.0% |
| !!! | AATGAAGGAAGATTTTATTA+TGG | + | chr4.3:89842153-89842172 | MS.gene34195:CDS | 20.0% |
| !!! | AATTTTGTTTCTATGTAGAT+TGG | + | chr4.3:89841355-89841374 | MS.gene34195:intron | 20.0% |
| !!! | ACATACTAAATTTTAAGACT+TGG | - | chr4.3:89843413-89843432 | None:intergenic | 20.0% |
| !!! | ATTTTGTTTCTATGTAGATT+GGG | + | chr4.3:89841356-89841375 | MS.gene34195:intron | 20.0% |
| !!! | CAATCATAAATTGATTGTTT+TGG | - | chr4.3:89844098-89844117 | None:intergenic | 20.0% |
| !!! | GGTTTTAATTTTTTTTTTCC+TGG | + | chr4.3:89842054-89842073 | MS.gene34195:intron | 20.0% |
| !!! | TTTTATTTAAGGCTTTTTGT+AGG | + | chr4.3:89844039-89844058 | MS.gene34195:intron | 20.0% |
| ! | AAAAATATAGGAAACTCAGT+TGG | - | chr4.3:89842332-89842351 | None:intergenic | 25.0% |
| ! | AAAATATAGGAAACTCAGTT+GGG | - | chr4.3:89842331-89842350 | None:intergenic | 25.0% |
| ! | AAAGAAACATAAATACAGAG+AGG | - | chr4.3:89843097-89843116 | None:intergenic | 25.0% |
| ! | AAAGAGTAGCTAGAATATAA+TGG | - | chr4.3:89845548-89845567 | None:intergenic | 25.0% |
| ! | AAATGGTATTACATTGGAAT+TGG | + | chr4.3:89844827-89844846 | MS.gene34195:intron | 25.0% |
| ! | AAATTAAAACCAGTCAAGTA+TGG | - | chr4.3:89842045-89842064 | None:intergenic | 25.0% |
| ! | AACTAAAATATCTCCAAGAA+AGG | - | chr4.3:89841278-89841297 | None:intergenic | 25.0% |
| ! | AAGAAACATAAATACAGAGA+GGG | - | chr4.3:89843096-89843115 | None:intergenic | 25.0% |
| ! | AAGATAGCATATATTACAAG+TGG | - | chr4.3:89844366-89844385 | None:intergenic | 25.0% |
| ! | AAGTTTGAAAGTTAATCTGT+TGG | - | chr4.3:89843664-89843683 | None:intergenic | 25.0% |
| ! | AATAAAATCTTCCTTCATTG+GGG | - | chr4.3:89842152-89842171 | None:intergenic | 25.0% |
| ! | AATTAGAATTATCATGTCAC+TGG | - | chr4.3:89845007-89845026 | None:intergenic | 25.0% |
| ! | AATTATCAGAGTAAAGTTAG+GGG | + | chr4.3:89844659-89844678 | MS.gene34195:intron | 25.0% |
| ! | ACTAAAATATCTCCAAGAAA+GGG | - | chr4.3:89841277-89841296 | None:intergenic | 25.0% |
| ! | ATAAAAATGTAGCAAAACAC+AGG | - | chr4.3:89843279-89843298 | None:intergenic | 25.0% |
| ! | ATAACAAAGAAATGTTACTG+TGG | - | chr4.3:89843607-89843626 | None:intergenic | 25.0% |
| ! | ATATGTTGTAATTCTTGTGA+GGG | + | chr4.3:89843224-89843243 | MS.gene34195:intron | 25.0% |
| ! | ATGAACATGTTAAAACTACT+TGG | + | chr4.3:89844901-89844920 | MS.gene34195:intron | 25.0% |
| ! | ATGGAGAAGATAATAATGTT+AGG | - | chr4.3:89842026-89842045 | None:intergenic | 25.0% |
| ! | ATTACAACATATAAACAGAG+AGG | - | chr4.3:89843216-89843235 | None:intergenic | 25.0% |
| ! | ATTATCAGTATGATACACTA+AGG | + | chr4.3:89844273-89844292 | MS.gene34195:CDS | 25.0% |
| ! | ATTTAAAAGAACATCTAAGG+AGG | + | chr4.3:89845622-89845641 | MS.gene34195:CDS | 25.0% |
| ! | ATTTGTTTACCATGAAATTC+TGG | + | chr4.3:89841221-89841240 | MS.gene34195:CDS | 25.0% |
| ! | CCAAAAAAACTATCACAAAA+AGG | + | chr4.3:89841855-89841874 | MS.gene34195:CDS | 25.0% |
| ! | CGTCACTAAACTAAAAATAT+AGG | - | chr4.3:89842344-89842363 | None:intergenic | 25.0% |
| ! | GAAGAAATGATCATATAAGT+TGG | - | chr4.3:89841690-89841709 | None:intergenic | 25.0% |
| ! | GAATTATCAGAGTAAAGTTA+GGG | + | chr4.3:89844658-89844677 | MS.gene34195:intron | 25.0% |
| ! | GAGATTTAAAAGAACATCTA+AGG | + | chr4.3:89845619-89845638 | MS.gene34195:intron | 25.0% |
| ! | TAGTTATTACTAATATGGGA+GGG | + | chr4.3:89845132-89845151 | MS.gene34195:intron | 25.0% |
| ! | TATATGTTGTAATTCTTGTG+AGG | + | chr4.3:89843223-89843242 | MS.gene34195:intron | 25.0% |
| ! | TGAATTATCAGAGTAAAGTT+AGG | + | chr4.3:89844657-89844676 | MS.gene34195:intron | 25.0% |
| ! | TTAGTTATTACTAATATGGG+AGG | + | chr4.3:89845131-89845150 | MS.gene34195:intron | 25.0% |
| ! | TTATTACATAAAAAGAACCC+AGG | - | chr4.3:89842075-89842094 | None:intergenic | 25.0% |
| ! | TTGGATTATGAAGATGATAT+AGG | - | chr4.3:89844325-89844344 | None:intergenic | 25.0% |
| !! | AAATTTAGCATAGGTTGAAA+GGG | - | chr4.3:89842916-89842935 | None:intergenic | 25.0% |
| !! | ACAATATTTGACTGCATTTT+TGG | + | chr4.3:89843540-89843559 | MS.gene34195:intron | 25.0% |
| !! | CCTTTTTGTGATAGTTTTTT+TGG | - | chr4.3:89841858-89841877 | None:intergenic | 25.0% |
| !! | GATAATAAAGTGTTAGGTTT+GGG | + | chr4.3:89844769-89844788 | MS.gene34195:intron | 25.0% |
| !! | TAAATTTAGCATAGGTTGAA+AGG | - | chr4.3:89842917-89842936 | None:intergenic | 25.0% |
| !! | TAATTCCTAGAGGATTATTT+TGG | - | chr4.3:89842835-89842854 | None:intergenic | 25.0% |
| !! | TTATATTCTAGCTACTCTTT+CGG | + | chr4.3:89845548-89845567 | MS.gene34195:intron | 25.0% |
| !! | TTTGAGATTTGTGATAAGTA+AGG | + | chr4.3:89842256-89842275 | MS.gene34195:intron | 25.0% |
| !!! | GTAGTTTTAACATGTTCATA+AGG | - | chr4.3:89844900-89844919 | None:intergenic | 25.0% |
| !!! | TAATTTTGGCTTAAAAAGTG+TGG | + | chr4.3:89843816-89843835 | MS.gene34195:intron | 25.0% |
| AAAAAACTCCCATGTCAATA+CGG | - | chr4.3:89843488-89843507 | None:intergenic | 30.0% | |
| AAAAGAGATATGGAGTCAAA+TGG | + | chr4.3:89844810-89844829 | MS.gene34195:intron | 30.0% | |
| AAAGACATCCTATTAATCAG+AGG | + | chr4.3:89843763-89843782 | MS.gene34195:CDS | 30.0% | |
| AACAACCAAAATAATCCTCT+AGG | + | chr4.3:89842827-89842846 | MS.gene34195:intron | 30.0% | |
| AAGACATCCTATTAATCAGA+GGG | + | chr4.3:89843764-89843783 | MS.gene34195:CDS | 30.0% | |
| AATTGGATATCATTCAAGAG+TGG | + | chr4.3:89844844-89844863 | MS.gene34195:intron | 30.0% | |
| ACATTGCACAAGATAGAATT+AGG | + | chr4.3:89844631-89844650 | MS.gene34195:intron | 30.0% | |
| AGAAACATAAATACAGAGAG+GGG | - | chr4.3:89843095-89843114 | None:intergenic | 30.0% | |
| AGAATTAGGAAGACGTTAAA+AGG | - | chr4.3:89843895-89843914 | None:intergenic | 30.0% | |
| AGATATGTCATATGTGAAAC+TGG | - | chr4.3:89843174-89843193 | None:intergenic | 30.0% | |
| AGTAGTCACCATCAAAATAT+GGG | - | chr4.3:89841757-89841776 | None:intergenic | 30.0% | |
| ATGCAGAAATTTCACATGTA+TGG | - | chr4.3:89845265-89845284 | None:intergenic | 30.0% | |
| ATTGGATATCATTCAAGAGT+GGG | + | chr4.3:89844845-89844864 | MS.gene34195:intron | 30.0% | |
| CTTCTTAACATAGTTTCCAT+GGG | + | chr4.3:89843436-89843455 | MS.gene34195:intron | 30.0% | |
| CTTGGTATTTAAGAGACTAA+TGG | + | chr4.3:89842694-89842713 | MS.gene34195:intron | 30.0% | |
| GAATTGTGTAATTACAGCTA+AGG | + | chr4.3:89845301-89845320 | MS.gene34195:intron | 30.0% | |
| GCAGTTTATTATCCCTATTA+TGG | - | chr4.3:89842806-89842825 | None:intergenic | 30.0% | |
| GTTATGGTTTAAATGCTGAA+TGG | + | chr4.3:89842575-89842594 | MS.gene34195:intron | 30.0% | |
| TAGAGATTACCAGAATTTCA+TGG | - | chr4.3:89841233-89841252 | None:intergenic | 30.0% | |
| TATCACAAATCTCAAAGTTC+TGG | - | chr4.3:89842252-89842271 | None:intergenic | 30.0% | |
| TATCCATGATTGTTAGATTG+AGG | + | chr4.3:89842383-89842402 | MS.gene34195:intron | 30.0% | |
| TCTTTATCCTTTGTATCAGA+TGG | - | chr4.3:89844188-89844207 | None:intergenic | 30.0% | |
| TTTAACGTCTTCCTAATTCT+TGG | + | chr4.3:89843895-89843914 | MS.gene34195:intron | 30.0% | |
| ! | AATAATCCTCTAGGAATTAG+AGG | + | chr4.3:89842836-89842855 | MS.gene34195:intron | 30.0% |
| ! | ATAATCCTCTAGGAATTAGA+GGG | + | chr4.3:89842837-89842856 | MS.gene34195:intron | 30.0% |
| ! | ATCCAGTAAGTGTCTAATTT+TGG | + | chr4.3:89843802-89843821 | MS.gene34195:intron | 30.0% |
| ! | ATGCAATTCTTGTTATCAGA+AGG | + | chr4.3:89844439-89844458 | MS.gene34195:CDS | 30.0% |
| ! | ATGGAGGATAATAAAGTGTT+AGG | + | chr4.3:89844763-89844782 | MS.gene34195:intron | 30.0% |
| ! | ATTTTGTCATGCCTCTTTTT+AGG | + | chr4.3:89843706-89843725 | MS.gene34195:intron | 30.0% |
| ! | CATTAGTCTCTTAAATACCA+AGG | - | chr4.3:89842696-89842715 | None:intergenic | 30.0% |
| ! | GGATAATAAAGTGTTAGGTT+TGG | + | chr4.3:89844768-89844787 | MS.gene34195:intron | 30.0% |
| ! | TAGGTATTTTGTATGTTGGT+TGG | - | chr4.3:89842879-89842898 | None:intergenic | 30.0% |
| ! | TCAATCTTATCTCCATGTTT+TGG | + | chr4.3:89842283-89842302 | MS.gene34195:intron | 30.0% |
| ! | TGCAATTCTTGTTATCAGAA+GGG | + | chr4.3:89844440-89844459 | MS.gene34195:CDS | 30.0% |
| ! | TGTTTTTCCCTCTGATTAAT+AGG | - | chr4.3:89843774-89843793 | None:intergenic | 30.0% |
| ! | TTGACTCCATATCTCTTTTA+TGG | - | chr4.3:89844809-89844828 | None:intergenic | 30.0% |
| ! | TTTAATGAGCTTTATCTTGC+AGG | + | chr4.3:89844145-89844164 | MS.gene34195:intron | 30.0% |
| ! | TTTTACCAGCTGCTATATAT+GGG | + | chr4.3:89841405-89841424 | MS.gene34195:CDS | 30.0% |
| !! | ATTTTGTATGTTGGTTGGTT+TGG | - | chr4.3:89842874-89842893 | None:intergenic | 30.0% |
| !! | GCTTTAGGTATTTTGTATGT+TGG | - | chr4.3:89842883-89842902 | None:intergenic | 30.0% |
| !! | TCCAGTTACTGATTTAATCT+CGG | - | chr4.3:89841187-89841206 | None:intergenic | 30.0% |
| !! | TGCTCGAGCATTTTTATTTA+AGG | + | chr4.3:89844028-89844047 | MS.gene34195:intron | 30.0% |
| !! | TTTGACTGCATTTTTGGATT+TGG | + | chr4.3:89843546-89843565 | MS.gene34195:intron | 30.0% |
| !!! | TATTGACATGGGAGTTTTTT+TGG | + | chr4.3:89843488-89843507 | MS.gene34195:intron | 30.0% |
| !!! | TCTTGGAGATATTTTAGTTC+TGG | + | chr4.3:89841279-89841298 | MS.gene34195:intron | 30.0% |
| !!! | TGAATTTTTTGACACTAGAC+AGG | + | chr4.3:89844223-89844242 | MS.gene34195:CDS | 30.0% |
| !!! | TTTGGTGTTTTCTGAATTTC+TGG | - | chr4.3:89841475-89841494 | None:intergenic | 30.0% |
| !!! | TTTTGTATGTTGGTTGGTTT+GGG | - | chr4.3:89842873-89842892 | None:intergenic | 30.0% |
| AAAAGACTCAGTGGATAAGA+TGG | + | chr4.3:89844744-89844763 | MS.gene34195:intron | 35.0% | |
| AAATCATTGCCTTGGTAGAA+TGG | + | chr4.3:89842503-89842522 | MS.gene34195:intron | 35.0% | |
| AACAATCATGGATATGACAC+AGG | - | chr4.3:89842377-89842396 | None:intergenic | 35.0% | |
| AAGCAGTTTCCAGAATAGAT+TGG | + | chr4.3:89842433-89842452 | MS.gene34195:intron | 35.0% | |
| AATCTGATAAGCTTCGTGAA+TGG | + | chr4.3:89841494-89841513 | MS.gene34195:CDS | 35.0% | |
| ACACCTCAATCTAACAATCA+TGG | - | chr4.3:89842389-89842408 | None:intergenic | 35.0% | |
| ACATGAGATTATATGGCGTT+GGG | - | chr4.3:89843630-89843649 | None:intergenic | 35.0% | |
| AGAAGTAGCAGTTACATAAC+AGG | + | chr4.3:89842768-89842787 | MS.gene34195:intron | 35.0% | |
| AGCCAAAATTAGACACTTAC+TGG | - | chr4.3:89843807-89843826 | None:intergenic | 35.0% | |
| ATATAATCTTCACCCTTCAG+CGG | - | chr4.3:89841439-89841458 | None:intergenic | 35.0% | |
| ATCAGTATGATACACTAAGG+CGG | + | chr4.3:89844276-89844295 | MS.gene34195:CDS | 35.0% | |
| ATGATATAGGACCATCATTG+AGG | - | chr4.3:89844312-89844331 | None:intergenic | 35.0% | |
| ATGCCATAAGACATGCATTA+TGG | + | chr4.3:89842548-89842567 | MS.gene34195:intron | 35.0% | |
| CAATTAGGATATTGGCAATG+TGG | - | chr4.3:89845369-89845388 | None:intergenic | 35.0% | |
| CAGTAGTCACCATCAAAATA+TGG | - | chr4.3:89841758-89841777 | None:intergenic | 35.0% | |
| CATGAGCATTCATTAGGATA+AGG | - | chr4.3:89842661-89842680 | None:intergenic | 35.0% | |
| CATGTTAAAAAAAGCTGCGA+AGG | + | chr4.3:89841643-89841662 | MS.gene34195:CDS | 35.0% | |
| CATGTTCATAAGGAACTTCA+TGG | - | chr4.3:89844890-89844909 | None:intergenic | 35.0% | |
| CCAAATATGAAAGATACACC+CGG | - | chr4.3:89841143-89841162 | None:intergenic | 35.0% | |
| CCTTTGTAGAAAAGGTTGTA+GGG | + | chr4.3:89844687-89844706 | MS.gene34195:intron | 35.0% | |
| CTTGAACATACATGCCAAAT+AGG | - | chr4.3:89841086-89841105 | None:intergenic | 35.0% | |
| CTTTGCGACAATTAGGATAT+TGG | - | chr4.3:89845377-89845396 | None:intergenic | 35.0% | |
| GAAATGCAACTGCCATAATA+GGG | + | chr4.3:89842791-89842810 | MS.gene34195:intron | 35.0% | |
| GAAGTAGCAGTTACATAACA+GGG | + | chr4.3:89842769-89842788 | MS.gene34195:intron | 35.0% | |
| GAGAGTAAGAACCAAGAATT+AGG | - | chr4.3:89843909-89843928 | None:intergenic | 35.0% | |
| GAGGGAAGAAAATGATGTTT+CGG | + | chr4.3:89843242-89843261 | MS.gene34195:intron | 35.0% | |
| GATATTACTTAATGCTCCTG+TGG | + | chr4.3:89844568-89844587 | MS.gene34195:intron | 35.0% | |
| GATGAATTACTTTGTGCATG+AGG | - | chr4.3:89841937-89841956 | None:intergenic | 35.0% | |
| GATTAAATCAGTAACTGGAG+AGG | + | chr4.3:89841188-89841207 | MS.gene34195:CDS | 35.0% | |
| GCTTCATAACACCTAAAAAG+AGG | - | chr4.3:89843720-89843739 | None:intergenic | 35.0% | |
| GCTTCTTAACATAGTTTCCA+TGG | + | chr4.3:89843435-89843454 | MS.gene34195:intron | 35.0% | |
| GGAGTCAAATGGTATTACAT+TGG | + | chr4.3:89844821-89844840 | MS.gene34195:intron | 35.0% | |
| GGCATGTATGTTCAAGAATT+TGG | + | chr4.3:89841090-89841109 | MS.gene34195:CDS | 35.0% | |
| GGGAAACCATAAAAGAGATA+TGG | + | chr4.3:89844800-89844819 | MS.gene34195:intron | 35.0% | |
| GTGTTCTTTGCAAGAAAATG+TGG | + | chr4.3:89845451-89845470 | MS.gene34195:CDS | 35.0% | |
| GTTCTTACTCTCAGAAGATA+AGG | + | chr4.3:89843917-89843936 | MS.gene34195:intron | 35.0% | |
| TAAATCTGATACCAAACCAC+AGG | - | chr4.3:89844587-89844606 | None:intergenic | 35.0% | |
| TACATGAGATTATATGGCGT+TGG | - | chr4.3:89843631-89843650 | None:intergenic | 35.0% | |
| TACCTGAAGAAACATGTTCA+CGG | - | chr4.3:89841617-89841636 | None:intergenic | 35.0% | |
| TACTAACAATACCTAACGGT+CGG | + | chr4.3:89843034-89843053 | MS.gene34195:intron | 35.0% | |
| TAGAGACATGACATGATGAA+AGG | - | chr4.3:89845186-89845205 | None:intergenic | 35.0% | |
| TCATGTCTGTGATATATCCT+TGG | + | chr4.3:89842676-89842695 | MS.gene34195:intron | 35.0% | |
| TCCTTTGTAGAAAAGGTTGT+AGG | + | chr4.3:89844686-89844705 | MS.gene34195:intron | 35.0% | |
| TGATGTACCATCTGATACAA+AGG | + | chr4.3:89844178-89844197 | MS.gene34195:CDS | 35.0% | |
| TGCTATCTTGACATAGAAAC+TGG | + | chr4.3:89844377-89844396 | MS.gene34195:CDS | 35.0% | |
| TTATCTTCTCCATACTTGAC+TGG | + | chr4.3:89842033-89842052 | MS.gene34195:intron | 35.0% | |
| ! | AAACTGCTTGATGGATCTTT+AGG | - | chr4.3:89842422-89842441 | None:intergenic | 35.0% |
| ! | AATTCTTGTTATCAGAAGGG+AGG | + | chr4.3:89844443-89844462 | MS.gene34195:CDS | 35.0% |
| ! | ATGCATGTCTTATGGCATTT+TGG | - | chr4.3:89842546-89842565 | None:intergenic | 35.0% |
| ! | CATACTGATAATGATTTCCC+TGG | - | chr4.3:89844265-89844284 | None:intergenic | 35.0% |
| ! | GGATGATTTGTCAACTTATG+AGG | - | chr4.3:89844479-89844498 | None:intergenic | 35.0% |
| ! | GTTTTACCAGCTGCTATATA+TGG | + | chr4.3:89841404-89841423 | MS.gene34195:CDS | 35.0% |
| ! | TCACGAAGCTTATCAGATTT+TGG | - | chr4.3:89841493-89841512 | None:intergenic | 35.0% |
| ! | TGTTAGATTGAGGTGTTTAC+TGG | + | chr4.3:89842393-89842412 | MS.gene34195:intron | 35.0% |
| ! | TGTTATGTAACTGCTACTTC+TGG | - | chr4.3:89842769-89842788 | None:intergenic | 35.0% |
| !! | AAAAGGGCTTTAAAAGCATC+TGG | + | chr4.3:89841872-89841891 | MS.gene34195:CDS | 35.0% |
| !! | CCAGTTACTGATTTAATCTC+GGG | - | chr4.3:89841186-89841205 | None:intergenic | 35.0% |
| !! | GGTATATAACTTGTTGTGTC+TGG | + | chr4.3:89845087-89845106 | MS.gene34195:intron | 35.0% |
| !! | GTGTTTTCTGAATTTCTGGA+TGG | - | chr4.3:89841471-89841490 | None:intergenic | 35.0% |
| !!! | CATATTTTGATGGTGACTAC+TGG | + | chr4.3:89841756-89841775 | MS.gene34195:CDS | 35.0% |
| !!! | CTTCGCAGCTTTTTTTAACA+TGG | - | chr4.3:89841645-89841664 | None:intergenic | 35.0% |
| AAATGTTGTGTGGCAGTAAC+TGG | - | chr4.3:89842969-89842988 | None:intergenic | 40.0% | |
| AACTGGTATGTAACTGCTCT+AGG | - | chr4.3:89842952-89842971 | None:intergenic | 40.0% | |
| AATTGCATACGTCGTACTCA+GGG | - | chr4.3:89844427-89844446 | None:intergenic | 40.0% | |
| ACATAGAAACTGGTCAAGGT+TGG | + | chr4.3:89844387-89844406 | MS.gene34195:CDS | 40.0% | |
| ATCCGTGAACATGTTTCTTC+AGG | + | chr4.3:89841612-89841631 | MS.gene34195:intron | 40.0% | |
| ATCTTCCTTCATTGGGGAAA+TGG | - | chr4.3:89842146-89842165 | None:intergenic | 40.0% | |
| CAAGAAAGGGTTACAAAGCA+AGG | - | chr4.3:89841264-89841283 | None:intergenic | 40.0% | |
| CACAGACATGAGCATTCATT+AGG | - | chr4.3:89842667-89842686 | None:intergenic | 40.0% | |
| CACGGAGCTTACAATATTCA+AGG | - | chr4.3:89841384-89841403 | None:intergenic | 40.0% | |
| CACGTGTTAATCTGTGCTTT+GGG | + | chr4.3:89845587-89845606 | MS.gene34195:intron | 40.0% | |
| CAGCCATAATGCATGTCTTA+TGG | - | chr4.3:89842554-89842573 | None:intergenic | 40.0% | |
| CATGCATTATGGCTGAGTTA+TGG | + | chr4.3:89842559-89842578 | MS.gene34195:intron | 40.0% | |
| CCCGAGATTAAATCAGTAAC+TGG | + | chr4.3:89841183-89841202 | MS.gene34195:CDS | 40.0% | |
| CCGGGTGTATCTTTCATATT+TGG | + | chr4.3:89841140-89841159 | MS.gene34195:CDS | 40.0% | |
| CCTAATTGTCGCAAAGTGAA+GGG | + | chr4.3:89845381-89845400 | MS.gene34195:CDS | 40.0% | |
| CTTGAATATTGTAAGCTCCG+TGG | + | chr4.3:89841382-89841401 | MS.gene34195:CDS | 40.0% | |
| CTTGACATAGAAACTGGTCA+AGG | + | chr4.3:89844383-89844402 | MS.gene34195:CDS | 40.0% | |
| CTTGCTTTGTAACCCTTTCT+TGG | + | chr4.3:89841262-89841281 | MS.gene34195:intron | 40.0% | |
| GATCATTTCTTCACATCCAC+CGG | + | chr4.3:89841698-89841717 | MS.gene34195:CDS | 40.0% | |
| GGAAATGCAACTGCCATAAT+AGG | + | chr4.3:89842790-89842809 | MS.gene34195:intron | 40.0% | |
| GTACTTGCACCAATCTATTC+TGG | - | chr4.3:89842445-89842464 | None:intergenic | 40.0% | |
| GTATGGTGATAAGCAAACGA+TGG | - | chr4.3:89845248-89845267 | None:intergenic | 40.0% | |
| TACTTAATGCTCCTGTGGTT+TGG | + | chr4.3:89844573-89844592 | MS.gene34195:intron | 40.0% | |
| TATAGCAGCTGGTAAAACCA+CGG | - | chr4.3:89841402-89841421 | None:intergenic | 40.0% | |
| TATCAGAGTAAAGTTAGGGG+TGG | + | chr4.3:89844662-89844681 | MS.gene34195:intron | 40.0% | |
| TCAGTATGATACACTAAGGC+GGG | + | chr4.3:89844277-89844296 | MS.gene34195:CDS | 40.0% | |
| TCCTAATTGTCGCAAAGTGA+AGG | + | chr4.3:89845380-89845399 | MS.gene34195:CDS | 40.0% | |
| TCTGGTCATTCAGATCTTTC+AGG | + | chr4.3:89841890-89841909 | MS.gene34195:CDS | 40.0% | |
| TGAAACCATTTCCCCAATGA+AGG | + | chr4.3:89842138-89842157 | MS.gene34195:CDS | 40.0% | |
| TGATCTTTCTTTCTCCAGCT+TGG | + | chr4.3:89842115-89842134 | MS.gene34195:intron | 40.0% | |
| TTACAAGTGGTCACAAATGC+AGG | - | chr4.3:89844353-89844372 | None:intergenic | 40.0% | |
| TTGAAACTCACAAACTGCTG+TGG | + | chr4.3:89843575-89843594 | MS.gene34195:intron | 40.0% | |
| ! | AAGACAAGTTCGAGTATTGC+AGG | + | chr4.3:89844535-89844554 | MS.gene34195:CDS | 40.0% |
| ! | ACTATCCACCGTATTGACAT+GGG | + | chr4.3:89843477-89843496 | MS.gene34195:intron | 40.0% |
| ! | AGCATAGGTTGAAAGGGAAA+AGG | - | chr4.3:89842910-89842929 | None:intergenic | 40.0% |
| ! | ATCTCTTTTATGGTTTCCCC+TGG | - | chr4.3:89844799-89844818 | None:intergenic | 40.0% |
| ! | CCCTACAACCTTTTCTACAA+AGG | - | chr4.3:89844690-89844709 | None:intergenic | 40.0% |
| ! | CTATTCTGGAAACTGCTTGA+TGG | - | chr4.3:89842431-89842450 | None:intergenic | 40.0% |
| ! | CTGCTGTAATGGAAATGATG+AGG | + | chr4.3:89845676-89845695 | MS.gene34195:CDS | 40.0% |
| ! | GCATAGGTTGAAAGGGAAAA+GGG | - | chr4.3:89842909-89842928 | None:intergenic | 40.0% |
| ! | GTTTTCTTCCATCTTCCTCT+TGG | - | chr4.3:89841817-89841836 | None:intergenic | 40.0% |
| ! | TGGACTCTGTGAAGTATTTC+AGG | + | chr4.3:89841160-89841179 | MS.gene34195:CDS | 40.0% |
| !! | GCAAGACTCCCATATTTTGA+TGG | + | chr4.3:89841746-89841765 | MS.gene34195:CDS | 40.0% |
| AAACTCCCATGTCAATACGG+TGG | - | chr4.3:89843485-89843504 | None:intergenic | 45.0% | |
| AACCTTAGCCCTACATTCAC+CGG | - | chr4.3:89841720-89841739 | None:intergenic | 45.0% | |
| AAGGGAAAAGGGAGAGCTTT+AGG | - | chr4.3:89842898-89842917 | None:intergenic | 45.0% | |
| ACAAGCCCATATATAGCAGC+TGG | - | chr4.3:89841413-89841432 | None:intergenic | 45.0% | |
| ACACCATTAGAATGCAGCAG+TGG | - | chr4.3:89842201-89842220 | None:intergenic | 45.0% | |
| AGACTCAGTGGATAAGATGG+AGG | + | chr4.3:89844747-89844766 | MS.gene34195:intron | 45.0% | |
| ATGGATATGACACAGGTACG+AGG | - | chr4.3:89842370-89842389 | None:intergenic | 45.0% | |
| CAATACGGTGGATAGTGTTG+CGG | - | chr4.3:89843473-89843492 | None:intergenic | 45.0% | |
| CACCATTAGAATGCAGCAGT+GGG | - | chr4.3:89842200-89842219 | None:intergenic | 45.0% | |
| CCCTTCACTTTGCGACAATT+AGG | - | chr4.3:89845384-89845403 | None:intergenic | 45.0% | |
| CTACACCCTCTAATTCCTAG+AGG | - | chr4.3:89842845-89842864 | None:intergenic | 45.0% | |
| CTGAATGGTTACCTGTGCTA+TGG | + | chr4.3:89842590-89842609 | MS.gene34195:intron | 45.0% | |
| CTTGTGTGGAAAAGACTCAG+TGG | + | chr4.3:89844735-89844754 | MS.gene34195:intron | 45.0% | |
| GAATTGCATACGTCGTACTC+AGG | - | chr4.3:89844428-89844447 | None:intergenic | 45.0% | |
| GACCATCATTGAGGAATGCT+TGG | - | chr4.3:89844303-89844322 | None:intergenic | 45.0% | |
| GATAGTGTTGCGGAAAATGG+TGG | - | chr4.3:89843463-89843482 | None:intergenic | 45.0% | |
| GATTTATCAGCTACGCCAAG+AGG | + | chr4.3:89841799-89841818 | MS.gene34195:CDS | 45.0% | |
| GCAATGTGGAGAACGACATT+GGG | - | chr4.3:89845355-89845374 | None:intergenic | 45.0% | |
| GCACGTGTTAATCTGTGCTT+TGG | + | chr4.3:89845586-89845605 | MS.gene34195:intron | 45.0% | |
| GCAGAAGTTGCTAACAATGC+TGG | + | chr4.3:89845708-89845727 | MS.gene34195:CDS | 45.0% | |
| GGGTGGTTCCTTTGTAGAAA+AGG | + | chr4.3:89844679-89844698 | MS.gene34195:intron | 45.0% | |
| GTGCGTCATATGCCAAAACA+TGG | - | chr4.3:89842298-89842317 | None:intergenic | 45.0% | |
| GTGGATAGTGTTGCGGAAAA+TGG | - | chr4.3:89843466-89843485 | None:intergenic | 45.0% | |
| GTTGACAAATCATCCGTCAG+TGG | + | chr4.3:89844484-89844503 | MS.gene34195:CDS | 45.0% | |
| TACCCACTGCTGCATTCTAA+TGG | + | chr4.3:89842195-89842214 | MS.gene34195:CDS | 45.0% | |
| TCCACTACCAGATGCTTCAA+AGG | - | chr4.3:89842467-89842486 | None:intergenic | 45.0% | |
| TCGAGAAAAGACACTGGACA+AGG | - | chr4.3:89843148-89843167 | None:intergenic | 45.0% | |
| TGCTGCATTCTAATGGTGTG+TGG | + | chr4.3:89842202-89842221 | MS.gene34195:CDS | 45.0% | |
| TGGTACTCGAGAAAAGACAC+TGG | - | chr4.3:89843154-89843173 | None:intergenic | 45.0% | |
| TGTTAGGTTTGGGAGAACCA+GGG | + | chr4.3:89844779-89844798 | MS.gene34195:intron | 45.0% | |
| TTGTGTCTGGTCACAATGGT+AGG | + | chr4.3:89845100-89845119 | MS.gene34195:intron | 45.0% | |
| TTTCACAAGAACCGACCGTT+AGG | - | chr4.3:89843048-89843067 | None:intergenic | 45.0% | |
| ! | CACTATCCACCGTATTGACA+TGG | + | chr4.3:89843476-89843495 | MS.gene34195:intron | 45.0% |
| ! | CTTGTTGTGTCTGGTCACAA+TGG | + | chr4.3:89845096-89845115 | MS.gene34195:intron | 45.0% |
| ! | GAGTATTGCAGGTACTGTAC+AGG | + | chr4.3:89844546-89844565 | MS.gene34195:intron | 45.0% |
| ! | GGTGTGGAAGTATGCCTATT+TGG | + | chr4.3:89841069-89841088 | MS.gene34195:CDS | 45.0% |
| ! | GTGTTTTGCAGTGCATACCA+TGG | - | chr4.3:89845416-89845435 | None:intergenic | 45.0% |
| ! | TACCTGTGCTATGGAGCTTT+TGG | + | chr4.3:89842599-89842618 | MS.gene34195:intron | 45.0% |
| ! | TTTTGCAGTGCATACCATGG+CGG | - | chr4.3:89845413-89845432 | None:intergenic | 45.0% |
| !! | ACCTTTGAAGCATCTGGTAG+TGG | + | chr4.3:89842463-89842482 | MS.gene34195:intron | 45.0% |
| !! | GCAAGTACCTTTGAAGCATC+TGG | + | chr4.3:89842457-89842476 | MS.gene34195:intron | 45.0% |
| ACGACGTAGAGCTGCTGTAA+TGG | + | chr4.3:89845665-89845684 | MS.gene34195:CDS | 50.0% | |
| AGAGAGGGGAGTGAGATAGA+GGG | - | chr4.3:89843081-89843100 | None:intergenic | 50.0% | |
| AGCCAAAAGCTCCATAGCAC+AGG | - | chr4.3:89842604-89842623 | None:intergenic | 50.0% | |
| AGCTGCGAAGGAGAATGTTG+TGG | + | chr4.3:89841655-89841674 | MS.gene34195:CDS | 50.0% | |
| AGGGTTTCACTCTAGCTAGC+TGG | + | chr4.3:89844706-89844725 | MS.gene34195:intron | 50.0% | |
| ATCAAATCTTCTGCAGCCCC+AGG | - | chr4.3:89841782-89841801 | None:intergenic | 50.0% | |
| CACATCCACCGGTGAATGTA+GGG | + | chr4.3:89841709-89841728 | MS.gene34195:CDS | 50.0% | |
| CACCACACACCATTCTACCA+AGG | - | chr4.3:89842515-89842534 | None:intergenic | 50.0% | |
| CACTGCAAAACACGTGCTTC+TGG | + | chr4.3:89845423-89845442 | MS.gene34195:CDS | 50.0% | |
| CTTGGTAGAATGGTGTGTGG+TGG | + | chr4.3:89842513-89842532 | MS.gene34195:intron | 50.0% | |
| GACAAATCATCCGTCAGTGG+CGG | + | chr4.3:89844487-89844506 | MS.gene34195:CDS | 50.0% | |
| GCATTTCTGAGTCTCTGCCA+GGG | + | chr4.3:89844245-89844264 | MS.gene34195:CDS | 50.0% | |
| GGCAATGTGGAGAACGACAT+TGG | - | chr4.3:89845356-89845375 | None:intergenic | 50.0% | |
| GGCCAAGCATTCCTCAATGA+TGG | + | chr4.3:89844298-89844317 | MS.gene34195:CDS | 50.0% | |
| GGGAAATGGTTTCACCAAGC+TGG | - | chr4.3:89842132-89842151 | None:intergenic | 50.0% | |
| GTCAATTTCCCAATCAGCGC+CGG | + | chr4.3:89841121-89841140 | MS.gene34195:CDS | 50.0% | |
| GTCACAAATGCAGGAGCAGT+TGG | - | chr4.3:89844344-89844363 | None:intergenic | 50.0% | |
| GTCTGGTCACAATGGTAGGT+AGG | + | chr4.3:89845104-89845123 | MS.gene34195:intron | 50.0% | |
| GTGTTAGGTTTGGGAGAACC+AGG | + | chr4.3:89844778-89844797 | MS.gene34195:intron | 50.0% | |
| GTTAGGTTTGGGAGAACCAG+GGG | + | chr4.3:89844780-89844799 | MS.gene34195:intron | 50.0% | |
| TAATCTTCACCCTTCAGCGG+AGG | - | chr4.3:89841436-89841455 | None:intergenic | 50.0% | |
| TCAATTTCCCAATCAGCGCC+GGG | + | chr4.3:89841122-89841141 | MS.gene34195:CDS | 50.0% | |
| TCACATCCACCGGTGAATGT+AGG | + | chr4.3:89841708-89841727 | MS.gene34195:CDS | 50.0% | |
| TGCAAAACACGTGCTTCTGG+AGG | + | chr4.3:89845426-89845445 | MS.gene34195:CDS | 50.0% | |
| TGCCTTGGTAGAATGGTGTG+TGG | + | chr4.3:89842510-89842529 | MS.gene34195:intron | 50.0% | |
| !! | CTAGCTGGTTTGAGCTTGTG+TGG | + | chr4.3:89844721-89844740 | MS.gene34195:intron | 50.0% |
| !! | GGCACTGATTACAAACCCAG+CGG | - | chr4.3:89842231-89842250 | None:intergenic | 50.0% |
| !! | TTGATGGTGACTACTGGCCT+GGG | + | chr4.3:89841762-89841781 | MS.gene34195:CDS | 50.0% |
| !! | TTTGATGGTGACTACTGGCC+TGG | + | chr4.3:89841761-89841780 | MS.gene34195:CDS | 50.0% |
| AATGCCATGTGCCACGATGC+AGG | + | chr4.3:89845514-89845533 | MS.gene34195:CDS | 55.0% | |
| AATGGTGTGTGGCAACCGCT+GGG | + | chr4.3:89842213-89842232 | MS.gene34195:CDS | 55.0% | |
| CAAACCTGCATCGTGGCACA+TGG | - | chr4.3:89845521-89845540 | None:intergenic | 55.0% | |
| CACCGGTGAATGTAGGGCTA+AGG | + | chr4.3:89841715-89841734 | MS.gene34195:CDS | 55.0% | |
| CAGAGAGGGGAGTGAGATAG+AGG | - | chr4.3:89843082-89843101 | None:intergenic | 55.0% | |
| CAGCTACGCCAAGAGGAAGA+TGG | + | chr4.3:89841806-89841825 | MS.gene34195:CDS | 55.0% | |
| CTTAGCCCTACATTCACCGG+TGG | - | chr4.3:89841717-89841736 | None:intergenic | 55.0% | |
| GACACTGGACAAGGAGTCAG+TGG | - | chr4.3:89843139-89843158 | None:intergenic | 55.0% | |
| GCATCGTGGCACATGGCATT+CGG | - | chr4.3:89845514-89845533 | None:intergenic | 55.0% | |
| GGCATTTCTGAGTCTCTGCC+AGG | + | chr4.3:89844244-89844263 | MS.gene34195:CDS | 55.0% | |
| TAATGGTGTGTGGCAACCGC+TGG | + | chr4.3:89842212-89842231 | MS.gene34195:CDS | 55.0% | |
| TGCGGAAAATGGTGGTCCCA+TGG | - | chr4.3:89843455-89843474 | None:intergenic | 55.0% | |
| TGGTCCACAAACCTGCATCG+TGG | - | chr4.3:89845528-89845547 | None:intergenic | 55.0% | |
| TGTGCCACGATGCAGGTTTG+TGG | + | chr4.3:89845521-89845540 | MS.gene34195:intron | 55.0% | |
| ! | AGTGCATACCATGGCGGAAG+AGG | - | chr4.3:89845407-89845426 | None:intergenic | 55.0% |
| ! | TGATGGTGACTACTGGCCTG+GGG | + | chr4.3:89841763-89841782 | MS.gene34195:CDS | 55.0% |
| !! | AAGATACACCCGGCGCTGAT+TGG | - | chr4.3:89841133-89841152 | None:intergenic | 55.0% |
| !! | AGATACACCCGGCGCTGATT+GGG | - | chr4.3:89841132-89841151 | None:intergenic | 55.0% |
| ATGGGCTTGTCCTCCGCTGA+AGG | + | chr4.3:89841423-89841442 | MS.gene34195:CDS | 60.0% | |
| GCATCACGATCCGCCACTGA+CGG | - | chr4.3:89844500-89844519 | None:intergenic | 60.0% | |
| TGGGCTTGTCCTCCGCTGAA+GGG | + | chr4.3:89841424-89841443 | MS.gene34195:CDS | 60.0% | |
| GTGAAGGGCCTCTTCCGCCA+TGG | + | chr4.3:89845396-89845415 | MS.gene34195:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 89841063 | 89845734 | 89841063 | ID=MS.gene34195 |
| chr4.3 | mRNA | 89841063 | 89845734 | 89841063 | ID=MS.gene34195.t1;Parent=MS.gene34195 |
| chr4.3 | exon | 89841063 | 89841242 | 89841063 | ID=MS.gene34195.t1.exon1;Parent=MS.gene34195.t1 |
| chr4.3 | CDS | 89841063 | 89841242 | 89841063 | ID=cds.MS.gene34195.t1;Parent=MS.gene34195.t1 |
| chr4.3 | exon | 89841373 | 89841515 | 89841373 | ID=MS.gene34195.t1.exon2;Parent=MS.gene34195.t1 |
| chr4.3 | CDS | 89841373 | 89841515 | 89841373 | ID=cds.MS.gene34195.t1;Parent=MS.gene34195.t1 |
| chr4.3 | exon | 89841634 | 89841946 | 89841634 | ID=MS.gene34195.t1.exon3;Parent=MS.gene34195.t1 |
| chr4.3 | CDS | 89841634 | 89841946 | 89841634 | ID=cds.MS.gene34195.t1;Parent=MS.gene34195.t1 |
| chr4.3 | exon | 89842133 | 89842272 | 89842133 | ID=MS.gene34195.t1.exon4;Parent=MS.gene34195.t1 |
| chr4.3 | CDS | 89842133 | 89842272 | 89842133 | ID=cds.MS.gene34195.t1;Parent=MS.gene34195.t1 |
| chr4.3 | exon | 89843728 | 89843806 | 89843728 | ID=MS.gene34195.t1.exon5;Parent=MS.gene34195.t1 |
| chr4.3 | CDS | 89843728 | 89843806 | 89843728 | ID=cds.MS.gene34195.t1;Parent=MS.gene34195.t1 |
| chr4.3 | exon | 89844167 | 89844556 | 89844167 | ID=MS.gene34195.t1.exon6;Parent=MS.gene34195.t1 |
| chr4.3 | CDS | 89844167 | 89844556 | 89844167 | ID=cds.MS.gene34195.t1;Parent=MS.gene34195.t1 |
| chr4.3 | exon | 89845318 | 89845535 | 89845318 | ID=MS.gene34195.t1.exon7;Parent=MS.gene34195.t1 |
| chr4.3 | CDS | 89845318 | 89845535 | 89845318 | ID=cds.MS.gene34195.t1;Parent=MS.gene34195.t1 |
| chr4.3 | exon | 89845620 | 89845734 | 89845620 | ID=MS.gene34195.t1.exon8;Parent=MS.gene34195.t1 |
| chr4.3 | CDS | 89845620 | 89845734 | 89845620 | ID=cds.MS.gene34195.t1;Parent=MS.gene34195.t1 |
| Gene Sequence |
| Protein sequence |
