Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35533.t1 | XP_003596864.1 | 93.4 | 468 | 31 | 0 | 1 | 468 | 1 | 468 | 5.00E-107 | 398.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35533.t1 | G7IHH7 | 93.4 | 468 | 31 | 0 | 1 | 468 | 1 | 468 | 3.6e-107 | 398.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene35533 | 0.839783 | 1.29E-57 | -1.69E-46 |
| MS.gene049824 | MS.gene35533 | 0.856528 | 3.03E-62 | -1.69E-46 |
| MS.gene049825 | MS.gene35533 | 0.835576 | 1.55E-56 | -1.69E-46 |
| MS.gene049850 | MS.gene35533 | 0.802727 | 4.89E-49 | -1.69E-46 |
| MS.gene049873 | MS.gene35533 | 0.845041 | 5.20E-59 | -1.69E-46 |
| MS.gene051719 | MS.gene35533 | 0.829535 | 4.87E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene35533 | 0.817076 | 3.98E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene35533 | 0.821236 | 4.49E-53 | -1.69E-46 |
| MS.gene051791 | MS.gene35533 | 0.814733 | 1.33E-51 | -1.69E-46 |
| MS.gene052020 | MS.gene35533 | 0.804644 | 1.96E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene35533 | 0.809013 | 2.33E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene35533 | 0.819378 | 1.20E-52 | -1.69E-46 |
| MS.gene052612 | MS.gene35533 | 0.802818 | 4.68E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene35533 | 0.8121 | 5.02E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene35533 | 0.800445 | 1.44E-48 | -1.69E-46 |
| MS.gene053122 | MS.gene35533 | 0.825323 | 4.99E-54 | -1.69E-46 |
| MS.gene053144 | MS.gene35533 | 0.818478 | 1.92E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene35533 | 0.853984 | 1.66E-61 | -1.69E-46 |
| MS.gene05364 | MS.gene35533 | 0.803679 | 3.11E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene35533 | 0.829176 | 5.96E-55 | -1.69E-46 |
| MS.gene055465 | MS.gene35533 | 0.802438 | 5.61E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene35533 | 0.819112 | 1.38E-52 | -1.69E-46 |
| MS.gene055468 | MS.gene35533 | 0.806956 | 6.39E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene35533 | 0.833551 | 5.00E-56 | -1.69E-46 |
| MS.gene055580 | MS.gene35533 | -0.834924 | 2.26E-56 | -1.69E-46 |
| MS.gene055890 | MS.gene35533 | 0.809594 | 1.75E-50 | -1.69E-46 |
| MS.gene056043 | MS.gene35533 | -0.811725 | 6.06E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene35533 | 0.81674 | 4.73E-52 | -1.69E-46 |
| MS.gene056542 | MS.gene35533 | 0.815267 | 1.01E-51 | -1.69E-46 |
| MS.gene056543 | MS.gene35533 | 0.812478 | 4.15E-51 | -1.69E-46 |
| MS.gene056545 | MS.gene35533 | 0.819199 | 1.32E-52 | -1.69E-46 |
| MS.gene056553 | MS.gene35533 | 0.82618 | 3.13E-54 | -1.69E-46 |
| MS.gene057444 | MS.gene35533 | 0.813899 | 2.03E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene35533 | 0.830193 | 3.37E-55 | -1.69E-46 |
| MS.gene058829 | MS.gene35533 | 0.801041 | 1.09E-48 | -1.69E-46 |
| MS.gene059015 | MS.gene35533 | 0.80028 | 1.55E-48 | -1.69E-46 |
| MS.gene059154 | MS.gene35533 | 0.814891 | 1.22E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene35533 | 0.804993 | 1.65E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene35533 | 0.830302 | 3.17E-55 | -1.69E-46 |
| MS.gene060194 | MS.gene35533 | 0.821432 | 4.05E-53 | -1.69E-46 |
| MS.gene060429 | MS.gene35533 | 0.809966 | 1.46E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene35533 | 0.831408 | 1.70E-55 | -1.69E-46 |
| MS.gene06094 | MS.gene35533 | 0.805639 | 1.21E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35533.t1 | MTR_2g086950 | 94.017 | 468 | 28 | 0 | 1 | 468 | 1 | 468 | 0.0 | 806 |
| MS.gene35533.t1 | MTR_8g102770 | 29.114 | 237 | 134 | 6 | 19 | 252 | 94 | 299 | 8.25e-13 | 69.7 |
| MS.gene35533.t1 | MTR_5g064040 | 33.929 | 168 | 105 | 4 | 97 | 260 | 418 | 583 | 3.28e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35533.t1 | AT5G22320 | 45.148 | 474 | 229 | 9 | 1 | 466 | 1 | 451 | 6.80e-114 | 343 |
| MS.gene35533.t1 | AT5G22320 | 43.249 | 474 | 222 | 10 | 1 | 466 | 1 | 435 | 3.61e-103 | 315 |
| MS.gene35533.t1 | AT5G19680 | 31.321 | 265 | 135 | 9 | 1 | 252 | 62 | 292 | 3.16e-14 | 73.9 |
| MS.gene35533.t1 | AT5G19680 | 32.857 | 140 | 83 | 2 | 37 | 171 | 193 | 326 | 1.32e-11 | 66.2 |
| MS.gene35533.t1 | AT4G35470 | 28.384 | 229 | 150 | 6 | 37 | 258 | 265 | 486 | 7.96e-11 | 64.7 |
| MS.gene35533.t1 | AT4G35470 | 28.384 | 229 | 150 | 6 | 37 | 258 | 265 | 486 | 8.35e-11 | 64.7 |
Find 0 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAACTTAAATCTA+TGG | + | 15251:11516-11535 | MS.gene35533:CDS | 10.0% |
| !!! | AAAAAAAGTTAAGATTTTTT+AGG | - | 15251:9856-9875 | MS.gene35533:intergenic | 10.0% |
| !!! | AAAAAAGTTAAGATTTTTTA+GGG | - | 15251:9855-9874 | MS.gene35533:intergenic | 10.0% |
| !! | ACAATAAAAATAGAGTTTAA+TGG | - | 15251:10705-10724 | MS.gene35533:intergenic | 15.0% |
| !! | TGAAAGTTATGAAAAAAAAT+TGG | + | 15251:9998-10017 | MS.gene35533:intron | 15.0% |
| !!! | AAACTCTATTTTTATTGTTA+TGG | + | 15251:10707-10726 | MS.gene35533:intron | 15.0% |
| !!! | ATTTCTATTTCTATTTCTAT+GGG | + | 15251:10509-10528 | MS.gene35533:intron | 15.0% |
| !!! | GTTTAAAAATTATTTTACGT+TGG | - | 15251:10553-10572 | MS.gene35533:intergenic | 15.0% |
| !!! | TATTTCTATTTCTATTTCTA+TGG | + | 15251:10508-10527 | MS.gene35533:intron | 15.0% |
| !!! | TTGATTGTATTTTATATGTA+TGG | + | 15251:10037-10056 | MS.gene35533:intron | 15.0% |
| !! | AGTATATTATTCTGAACATA+TGG | - | 15251:11377-11396 | MS.gene35533:intergenic | 20.0% |
| !! | ATGAAAAAAAATTGGAACTT+TGG | + | 15251:10006-10025 | MS.gene35533:intron | 20.0% |
| !! | ATGTTTAATAAAGCGTATTA+TGG | + | 15251:11233-11252 | MS.gene35533:intron | 20.0% |
| !! | TATTCAAAAATTATTTGAGC+TGG | - | 15251:12284-12303 | MS.gene35533:intergenic | 20.0% |
| !! | TTGTAACAAAGTATAAACAT+AGG | - | 15251:11425-11444 | MS.gene35533:intergenic | 20.0% |
| !! | TTTATATGTATGGTGTAAAA+GGG | + | 15251:10047-10066 | MS.gene35533:intron | 20.0% |
| !!! | TAAAAATTATTTTACGTTGG+CGG | - | 15251:10550-10569 | MS.gene35533:intergenic | 20.0% |
| !!! | TTTGAAATGCAAACTATTTT+TGG | + | 15251:12234-12253 | MS.gene35533:intron | 20.0% |
| !!! | TTTTATATGTATGGTGTAAA+AGG | + | 15251:10046-10065 | MS.gene35533:intron | 20.0% |
| !!! | TTTTTAGGGTTTTAACAAAA+GGG | - | 15251:9841-9860 | MS.gene35533:intergenic | 20.0% |
| !!! | TTTTTTAGGGTTTTAACAAA+AGG | - | 15251:9842-9861 | MS.gene35533:intergenic | 20.0% |
| ! | AAAAATCCTATCCGTAAAAT+TGG | + | 15251:12328-12347 | MS.gene35533:CDS | 25.0% |
| ! | AAATAACTAATGAGCACTAA+AGG | - | 15251:12416-12435 | MS.gene35533:intergenic | 25.0% |
| ! | AAATGAGAAAGTTACAAGAA+AGG | + | 15251:12962-12981 | MS.gene35533:CDS | 25.0% |
| ! | AATAAAGCGTATTATGGTTA+GGG | + | 15251:11239-11258 | MS.gene35533:intron | 25.0% |
| ! | AATAAATTAGAAAGCTTGGA+AGG | + | 15251:10113-10132 | MS.gene35533:CDS | 25.0% |
| ! | AATAGAAATATAGCACGTTT+AGG | - | 15251:10498-10517 | MS.gene35533:intergenic | 25.0% |
| ! | ATGAAAGAATTGAATACTCT+CGG | + | 15251:11773-11792 | MS.gene35533:CDS | 25.0% |
| ! | ATGGCTTATAGAAATTATCT+TGG | + | 15251:10994-11013 | MS.gene35533:intron | 25.0% |
| ! | ATTCAAACTGTCTTGATATA+AGG | + | 15251:12101-12120 | MS.gene35533:intron | 25.0% |
| ! | CTACACATACATATAGAATA+AGG | - | 15251:10231-10250 | MS.gene35533:intergenic | 25.0% |
| ! | GAGAAATAGTTAATTCCAAT+TGG | + | 15251:10641-10660 | MS.gene35533:intron | 25.0% |
| ! | TAAATTGAGATTTCTCAGTT+TGG | - | 15251:12922-12941 | MS.gene35533:intergenic | 25.0% |
| ! | TAATAAAGCGTATTATGGTT+AGG | + | 15251:11238-11257 | MS.gene35533:intron | 25.0% |
| ! | TATTATTCATAAGCTTGTCA+AGG | - | 15251:10429-10448 | MS.gene35533:intergenic | 25.0% |
| ! | TTCAACTTTCAAAATAGATG+AGG | - | 15251:11616-11635 | MS.gene35533:intergenic | 25.0% |
| ! | TTCTTGGTATCTTTATCTAT+TGG | - | 15251:13118-13137 | MS.gene35533:intergenic | 25.0% |
| ! | TTGAGATTAAAGCTCATTAA+TGG | - | 15251:10974-10993 | MS.gene35533:intergenic | 25.0% |
| ! | TTTATATTAACAAAGCAGCT+AGG | - | 15251:10171-10190 | MS.gene35533:intergenic | 25.0% |
| !! | AAATTATTTGGTGGAATACA+CGG | - | 15251:10592-10611 | MS.gene35533:intergenic | 25.0% |
| !! | ATTTTGAACCAAAAAAAGCA+AGG | - | 15251:12993-13012 | MS.gene35533:intergenic | 25.0% |
| !! | TAATGAGCTTTAATCTCAAA+TGG | + | 15251:10975-10994 | MS.gene35533:intron | 25.0% |
| !! | TATGATTGATTGTGATTTGT+TGG | + | 15251:10848-10867 | MS.gene35533:intron | 25.0% |
| !! | TTTTGAACCAAAAAAAGCAA+GGG | - | 15251:12992-13011 | MS.gene35533:intergenic | 25.0% |
| !!! | AGTTTCCTTTCTTTTTTTAC+TGG | - | 15251:13239-13258 | MS.gene35533:intergenic | 25.0% |
| !!! | TTCTATTTCTATGGGAAAAT+AGG | + | 15251:10517-10536 | MS.gene35533:intron | 25.0% |
| !!! | TTTTAGGGTTTTAACAAAAG+GGG | - | 15251:9840-9859 | MS.gene35533:intergenic | 25.0% |
| !!! | TTTTTGATTCTACATGCTTT+TGG | + | 15251:12601-12620 | MS.gene35533:intron | 25.0% |
| AAAAAGAAAGACAAACTCAC+AGG | + | 15251:13331-13350 | MS.gene35533:CDS | 30.0% | |
| AAAAATAAGCCAATCCAAAC+AGG | - | 15251:10302-10321 | MS.gene35533:intergenic | 30.0% | |
| AAAACATAACGCAATCCAAA+CGG | + | 15251:10470-10489 | MS.gene35533:intron | 30.0% | |
| AAACCAAAGTTGTATGAAGA+AGG | + | 15251:10905-10924 | MS.gene35533:intron | 30.0% | |
| AAACTATAAACTTGAGCACA+TGG | - | 15251:11160-11179 | MS.gene35533:intergenic | 30.0% | |
| AAAGAAGAATCGAAAGAACA+AGG | + | 15251:13471-13490 | MS.gene35533:CDS | 30.0% | |
| AAAGATACCAAGAATGAGAA+AGG | + | 15251:13124-13143 | MS.gene35533:CDS | 30.0% | |
| AAAGCAAAGTCACGAATTTA+AGG | - | 15251:12584-12603 | MS.gene35533:intergenic | 30.0% | |
| AAAGCTTCGGAATTTAGATT+TGG | + | 15251:12759-12778 | MS.gene35533:CDS | 30.0% | |
| AACGAAGAACAAGCTAAAAA+AGG | + | 15251:13384-13403 | MS.gene35533:CDS | 30.0% | |
| AAGCTTCGGAATTTAGATTT+GGG | + | 15251:12760-12779 | MS.gene35533:CDS | 30.0% | |
| AATCTGTAACATCATACACA+TGG | - | 15251:13056-13075 | MS.gene35533:intergenic | 30.0% | |
| ACCATCAGCAAGATATTATT+TGG | - | 15251:12260-12279 | MS.gene35533:intergenic | 30.0% | |
| AGATATAAAGGTTTGTCATC+TGG | + | 15251:12807-12826 | MS.gene35533:intron | 30.0% | |
| AGTACACAAAAATACTTCAC+TGG | - | 15251:11076-11095 | MS.gene35533:intergenic | 30.0% | |
| ATATGTATGTGTAGCTTAGA+AGG | + | 15251:10237-10256 | MS.gene35533:intron | 30.0% | |
| ATCATACACATGGTAGTTTA+AGG | - | 15251:13046-13065 | MS.gene35533:intergenic | 30.0% | |
| ATTACTCATAATTCCTCTTC+TGG | + | 15251:12451-12470 | MS.gene35533:intron | 30.0% | |
| CTCACTAATTTCAAATCCTT+AGG | - | 15251:13613-13632 | MS.gene35533:intergenic | 30.0% | |
| CTGAGAAATCTCAATTTACA+AGG | + | 15251:12924-12943 | MS.gene35533:CDS | 30.0% | |
| GAAGTCCAGTAAAAAAAGAA+AGG | + | 15251:13231-13250 | MS.gene35533:CDS | 30.0% | |
| GGAATAATGTGATTGCAAAA+TGG | + | 15251:12782-12801 | MS.gene35533:CDS | 30.0% | |
| GGAGAATAAATTAGAAAGCT+TGG | + | 15251:10109-10128 | MS.gene35533:CDS | 30.0% | |
| GGATATAGCAAATTATTTGG+TGG | - | 15251:10601-10620 | MS.gene35533:intergenic | 30.0% | |
| GTCTATGATAAGGAAAATAC+AGG | + | 15251:13286-13305 | MS.gene35533:CDS | 30.0% | |
| GTGGGATATAGCAAATTATT+TGG | - | 15251:10604-10623 | MS.gene35533:intergenic | 30.0% | |
| TAATGCACAATTCAAAGCTT+CGG | + | 15251:12746-12765 | MS.gene35533:CDS | 30.0% | |
| TCTTGCTCACAATGATATTA+AGG | + | 15251:12554-12573 | MS.gene35533:CDS | 30.0% | |
| TGAAAAATCATGAGCATCAT+CGG | - | 15251:13158-13177 | MS.gene35533:intergenic | 30.0% | |
| TGCAAAATGGTCAGATATAA+AGG | + | 15251:12795-12814 | MS.gene35533:CDS | 30.0% | |
| TTAATCTTTGTTCATTTCCC+AGG | + | 15251:9874-9893 | MS.gene35533:intron | 30.0% | |
| TTATTCTGAACATATGGATG+TGG | - | 15251:11371-11390 | MS.gene35533:intergenic | 30.0% | |
| TTGCATTTCAAACATACAAC+AGG | - | 15251:12226-12245 | MS.gene35533:intergenic | 30.0% | |
| ! | AAACAAGAGATTTTGTAAGC+TGG | + | 15251:12012-12031 | MS.gene35533:intron | 30.0% |
| ! | AATTGTGCATTAGTTCTTCT+GGG | - | 15251:12738-12757 | MS.gene35533:intergenic | 30.0% |
| ! | CAAGTGGAATTGTTTAGTTT+CGG | + | 15251:11029-11048 | MS.gene35533:intron | 30.0% |
| ! | CATTTTTAACATCAAGGATC+AGG | + | 15251:13543-13562 | MS.gene35533:CDS | 30.0% |
| ! | CTTTTCCAATTTATTGAAGC+TGG | - | 15251:9912-9931 | MS.gene35533:intergenic | 30.0% |
| ! | GATAGCTTTTCTTGTGTTAA+GGG | + | 15251:10276-10295 | MS.gene35533:intron | 30.0% |
| ! | GGTATCTTTATCTATTGGTT+TGG | - | 15251:13113-13132 | MS.gene35533:intergenic | 30.0% |
| ! | TACACTATTGTGCTAACTTT+TGG | + | 15251:12700-12719 | MS.gene35533:intron | 30.0% |
| ! | TGATAGCTTTTCTTGTGTTA+AGG | + | 15251:10275-10294 | MS.gene35533:intron | 30.0% |
| ! | TGCTGACATTTTTAACATCA+AGG | + | 15251:13537-13556 | MS.gene35533:CDS | 30.0% |
| !! | GTGAAGTATTTTTGTGTACT+TGG | + | 15251:11076-11095 | MS.gene35533:intron | 30.0% |
| !!! | TGCTTTTGGAATGTTTAATG+TGG | + | 15251:12615-12634 | MS.gene35533:intron | 30.0% |
| AAACATAACGCAATCCAAAC+GGG | + | 15251:10471-10490 | MS.gene35533:intron | 35.0% | |
| AACAAGCTAAAAAAGGACGA+CGG | + | 15251:13391-13410 | MS.gene35533:CDS | 35.0% | |
| AACTAAACAATTCCACTTGG+TGG | - | 15251:11028-11047 | MS.gene35533:intergenic | 35.0% | |
| AAGTTGTATGAAGAAGGTCA+TGG | + | 15251:10911-10930 | MS.gene35533:intron | 35.0% | |
| AATGTCAGCAAATGAAGCTT+CGG | - | 15251:13527-13546 | MS.gene35533:intergenic | 35.0% | |
| ACAGGTCATAACAAGGATAA+TGG | + | 15251:13304-13323 | MS.gene35533:CDS | 35.0% | |
| ACAGTTGCAATACAAGATGA+AGG | - | 15251:12881-12900 | MS.gene35533:intergenic | 35.0% | |
| ACTGGAAATTGAACTTGGAT+TGG | - | 15251:9751-9770 | MS.gene35533:intergenic | 35.0% | |
| ACTTTCAAAATAGATGAGGC+TGG | - | 15251:11612-11631 | MS.gene35533:intergenic | 35.0% | |
| ACTTTCTCATTTGTAGCAAC+AGG | - | 15251:12954-12973 | MS.gene35533:intergenic | 35.0% | |
| AGACAACGATAAAACGTTGT+TGG | - | 15251:12840-12859 | MS.gene35533:intergenic | 35.0% | |
| AGATCATGTCGATCAAAATG+AGG | + | 15251:13180-13199 | MS.gene35533:CDS | 35.0% | |
| AGCTTCGGAATTTAGATTTG+GGG | + | 15251:12761-12780 | MS.gene35533:CDS | 35.0% | |
| AGGGGTTTAGAGAAAAGAAA+AGG | - | 15251:9822-9841 | MS.gene35533:intergenic | 35.0% | |
| AGTTAATTCCAATTGGATGC+TGG | + | 15251:10648-10667 | MS.gene35533:intron | 35.0% | |
| CAATAATCTCACTTCACTTG+AGG | + | 15251:9946-9965 | MS.gene35533:CDS | 35.0% | |
| CAGTTCAACACAAAACTTGA+GGG | - | 15251:12523-12542 | MS.gene35533:intergenic | 35.0% | |
| CATCTGATCAAGTTTGCAAA+TGG | - | 15251:11756-11775 | MS.gene35533:intergenic | 35.0% | |
| CCGTATCATACTCTTAAAGT+GGG | - | 15251:10622-10641 | MS.gene35533:intergenic | 35.0% | |
| CGAAACTAAACAATTCCACT+TGG | - | 15251:11031-11050 | MS.gene35533:intergenic | 35.0% | |
| CTCAATCTGACAATGTGAAA+GGG | - | 15251:12487-12506 | MS.gene35533:intergenic | 35.0% | |
| CTCTTCTTATAAAACCCCTT+GGG | - | 15251:12140-12159 | MS.gene35533:intergenic | 35.0% | |
| CTTAGCCAGCTTCAATAAAT+TGG | + | 15251:9904-9923 | MS.gene35533:CDS | 35.0% | |
| CTTTCACATTGTCAGATTGA+GGG | + | 15251:12486-12505 | MS.gene35533:CDS | 35.0% | |
| GATCAGGAAAATCTGAATCA+TGG | + | 15251:13559-13578 | MS.gene35533:CDS | 35.0% | |
| GCCAAATAATATCTTGCTGA+TGG | + | 15251:12256-12275 | MS.gene35533:intron | 35.0% | |
| GGAAAATACAGGTCATAACA+AGG | + | 15251:13297-13316 | MS.gene35533:CDS | 35.0% | |
| GGGGTTTAGAGAAAAGAAAA+GGG | - | 15251:9821-9840 | MS.gene35533:intergenic | 35.0% | |
| GGGTTTAGAGAAAAGAAAAG+GGG | - | 15251:9820-9839 | MS.gene35533:intergenic | 35.0% | |
| GGTTTAGAGAAAAGAAAAGG+GGG | - | 15251:9819-9838 | MS.gene35533:intergenic | 35.0% | |
| TATGGTGTAAAAGGGATTGA+GGG | + | 15251:10055-10074 | MS.gene35533:intron | 35.0% | |
| TCAGTTCAACACAAAACTTG+AGG | - | 15251:12524-12543 | MS.gene35533:intergenic | 35.0% | |
| TCATCTTGTATTGCAACTGT+AGG | + | 15251:12881-12900 | MS.gene35533:intron | 35.0% | |
| TCCGTATCATACTCTTAAAG+TGG | - | 15251:10623-10642 | MS.gene35533:intergenic | 35.0% | |
| TCGCTAAAGTCTGAAAAAGA+TGG | - | 15251:11876-11895 | MS.gene35533:intergenic | 35.0% | |
| TGAAGACTGGAAATTGAACT+TGG | - | 15251:9756-9775 | MS.gene35533:intergenic | 35.0% | |
| TGACCTTCTTCATACAACTT+TGG | - | 15251:10911-10930 | MS.gene35533:intergenic | 35.0% | |
| TTTAACGATCTGACTATCTG+AGG | - | 15251:10790-10809 | MS.gene35533:intergenic | 35.0% | |
| TTTATACGATCATGTGAACC+AGG | + | 15251:11480-11499 | MS.gene35533:intron | 35.0% | |
| ! | AGACTCCACTTTATGCATTT+TGG | - | 15251:13671-13690 | MS.gene35533:intergenic | 35.0% |
| ! | ATTTTACACCAGCATCCAAT+TGG | - | 15251:10659-10678 | MS.gene35533:intergenic | 35.0% |
| ! | CAATACAAGATGAAGGTACA+TGG | - | 15251:12874-12893 | MS.gene35533:intergenic | 35.0% |
| ! | CCCACTTTAAGAGTATGATA+CGG | + | 15251:10619-10638 | MS.gene35533:intron | 35.0% |
| ! | GAATTGTGCATTAGTTCTTC+TGG | - | 15251:12739-12758 | MS.gene35533:intergenic | 35.0% |
| ! | GTTGATTTATTCTTCGTGTC+AGG | - | 15251:13367-13386 | MS.gene35533:intergenic | 35.0% |
| ! | TTTGAAGTGGTTATCAGTTG+TGG | + | 15251:10088-10107 | MS.gene35533:CDS | 35.0% |
| ! | TTTTTCCTGCATTTAGTACC+TGG | - | 15251:11501-11520 | MS.gene35533:intergenic | 35.0% |
| !! | AGTCTGAAAAAGATGGACTA+TGG | - | 15251:11869-11888 | MS.gene35533:intergenic | 35.0% |
| AAATGAAGAATCCCCGTTTC+GGG | - | 15251:11319-11338 | MS.gene35533:intergenic | 40.0% | |
| AACTGTTGATGTATCCGAGA+AGG | + | 15251:13255-13274 | MS.gene35533:CDS | 40.0% | |
| AGGATCAACAGTATTTCCCA+AGG | + | 15251:12121-12140 | MS.gene35533:intron | 40.0% | |
| ATCTTGAAGCTGCTGACAAA+AGG | + | 15251:13209-13228 | MS.gene35533:CDS | 40.0% | |
| ATTCAAAATCAGTGCACGGA+GGG | - | 15251:11563-11582 | MS.gene35533:intergenic | 40.0% | |
| ATTTCAAATCCTTAGGCGCT+TGG | - | 15251:13606-13625 | MS.gene35533:intergenic | 40.0% | |
| CAAGTGACCTTTCTCATTCT+TGG | - | 15251:13134-13153 | MS.gene35533:intergenic | 40.0% | |
| CACCATTCAAAATCAGTGCA+CGG | - | 15251:11567-11586 | MS.gene35533:intergenic | 40.0% | |
| CAGGAAAATCTGAATCATGG+TGG | + | 15251:13562-13581 | MS.gene35533:CDS | 40.0% | |
| CCTCAATCTGACAATGTGAA+AGG | - | 15251:12488-12507 | MS.gene35533:intergenic | 40.0% | |
| CCTCTTCTTATAAAACCCCT+TGG | - | 15251:12141-12160 | MS.gene35533:intergenic | 40.0% | |
| CCTTTCACATTGTCAGATTG+AGG | + | 15251:12485-12504 | MS.gene35533:CDS | 40.0% | |
| CTCTCGAGGAGAATGTTAAT+AGG | + | 15251:13437-13456 | MS.gene35533:CDS | 40.0% | |
| GAAAGCTTGGAAGGAATTCA+AGG | + | 15251:10122-10141 | MS.gene35533:CDS | 40.0% | |
| GAAATGAAGAATCCCCGTTT+CGG | - | 15251:11320-11339 | MS.gene35533:intergenic | 40.0% | |
| GAAGGTGAAATCCATCACAA+AGG | + | 15251:12363-12382 | MS.gene35533:CDS | 40.0% | |
| GAGTGCCAAAATGCATAAAG+TGG | + | 15251:13663-13682 | MS.gene35533:CDS | 40.0% | |
| GATCAACAGTATTTCCCAAG+GGG | + | 15251:12123-12142 | MS.gene35533:intron | 40.0% | |
| GCGTTGAATACTTGTAGCTT+TGG | - | 15251:13091-13110 | MS.gene35533:intergenic | 40.0% | |
| GGATCAACAGTATTTCCCAA+GGG | + | 15251:12122-12141 | MS.gene35533:intron | 40.0% | |
| GGCAAACATTACCTTTGTGA+TGG | - | 15251:12377-12396 | MS.gene35533:intergenic | 40.0% | |
| GTAACAGAAATTGGAATGGG+AGG | + | 15251:13703-13722 | MS.gene35533:CDS | 40.0% | |
| GTAGAAACCTTTCATCTCAC+AGG | + | 15251:11201-11220 | MS.gene35533:intron | 40.0% | |
| GTATGGTGTAAAAGGGATTG+AGG | + | 15251:10054-10073 | MS.gene35533:intron | 40.0% | |
| GTGGAATACACGGTTACTAT+TGG | - | 15251:10582-10601 | MS.gene35533:intergenic | 40.0% | |
| TAAAGGAGCTCAACAGCTTA+GGG | - | 15251:12399-12418 | MS.gene35533:intergenic | 40.0% | |
| TGCTGTGCTTTCATCACAAT+AGG | + | 15251:11911-11930 | MS.gene35533:intron | 40.0% | |
| TGTTAAGCTTGTACAGAGAG+TGG | + | 15251:11275-11294 | MS.gene35533:intron | 40.0% | |
| TTAGAGAAAAGAAAAGGGGG+TGG | - | 15251:9816-9835 | MS.gene35533:intergenic | 40.0% | |
| ! | AATTCCACTTGGTGGCAATT+TGG | - | 15251:11020-11039 | MS.gene35533:intergenic | 40.0% |
| ! | GGAAATTGAACTTGGATTGG+CGG | - | 15251:9748-9767 | MS.gene35533:intergenic | 40.0% |
| ! | GGGCATGTGTTAATTTGAAG+TGG | + | 15251:10075-10094 | MS.gene35533:CDS | 40.0% |
| ! | TGCTGAGTTATTTCCCGAAA+CGG | + | 15251:11303-11322 | MS.gene35533:intron | 40.0% |
| !! | AGGGGTTTTATAAGAAGAGG+AGG | + | 15251:12141-12160 | MS.gene35533:intron | 40.0% |
| !! | CCAAGGGGTTTTATAAGAAG+AGG | + | 15251:12138-12157 | MS.gene35533:intron | 40.0% |
| !!! | AGGTGATCCCTTGCTTTTTT+TGG | + | 15251:12982-13001 | MS.gene35533:intron | 40.0% |
| AAAGGAGCTCAACAGCTTAG+GGG | - | 15251:12398-12417 | MS.gene35533:intergenic | 45.0% | |
| AAGAAAAGGGGGTGGAAAGA+AGG | - | 15251:9808-9827 | MS.gene35533:intergenic | 45.0% | |
| AGCATGACCTGTGAGATGAA+AGG | - | 15251:11211-11230 | MS.gene35533:intergenic | 45.0% | |
| ATGTATCCGAGAAGGAAGGT+GGG | + | 15251:13263-13282 | MS.gene35533:CDS | 45.0% | |
| CATTCAAAATCAGTGCACGG+AGG | - | 15251:11564-11583 | MS.gene35533:intergenic | 45.0% | |
| CTAAAGGAGCTCAACAGCTT+AGG | - | 15251:12400-12419 | MS.gene35533:intergenic | 45.0% | |
| GAATGGGAGGTTCATCAACA+TGG | + | 15251:13716-13735 | MS.gene35533:CDS | 45.0% | |
| GACAATGTGAAAGGGAAAGC+TGG | - | 15251:12479-12498 | MS.gene35533:intergenic | 45.0% | |
| GCTGTCGTTCAATACTTGCT+CGG | - | 15251:9721-9740 | MS.gene35533:intergenic | 45.0% | |
| GGGTGGAAAGAAGGTTACAT+CGG | - | 15251:9799-9818 | MS.gene35533:intergenic | 45.0% | |
| GTGAACCAGGTACTAAATGC+AGG | + | 15251:11493-11512 | MS.gene35533:intron | 45.0% | |
| GTTGATGTATCCGAGAAGGA+AGG | + | 15251:13259-13278 | MS.gene35533:CDS | 45.0% | |
| TCCTATCCGTAAAATTGGCG+AGG | + | 15251:12333-12352 | MS.gene35533:CDS | 45.0% | |
| TCTTGTGTTAAGGGCCTGTT+TGG | + | 15251:10285-10304 | MS.gene35533:intron | 45.0% | |
| TGTTAAGGGCCTGTTTGGAT+TGG | + | 15251:10290-10309 | MS.gene35533:intron | 45.0% | |
| TTGGCACTCTTATGCTTGAC+AGG | - | 15251:13652-13671 | MS.gene35533:intergenic | 45.0% | |
| TTTGTGAGTGAGGTGAAGAC+TGG | - | 15251:9769-9788 | MS.gene35533:intergenic | 45.0% | |
| ! | AGTCCTAAGATTTTCTGCGC+TGG | + | 15251:11828-11847 | MS.gene35533:intron | 45.0% |
| ! | CTGAGTTATTTCCCGAAACG+GGG | + | 15251:11305-11324 | MS.gene35533:intron | 45.0% |
| ! | GCTGAGTTATTTCCCGAAAC+GGG | + | 15251:11304-11323 | MS.gene35533:intron | 45.0% |
| ! | TCAGAGCCTCGCCAATTTTA+CGG | - | 15251:12342-12361 | MS.gene35533:intergenic | 45.0% |
| !! | AGAGCCAAAGCTTTTTCCGA+GGG | - | 15251:13421-13440 | MS.gene35533:intergenic | 45.0% |
| !!! | CTCCGTGCACTGATTTTGAA+TGG | + | 15251:11562-11581 | MS.gene35533:CDS | 45.0% |
| AGCTGGCTAAGCATGATACC+TGG | - | 15251:9895-9914 | MS.gene35533:intergenic | 50.0% | |
| ATAGACCCCACCTTCCTTCT+CGG | - | 15251:13272-13291 | MS.gene35533:intergenic | 50.0% | |
| CAAGCCCTCGGAAAAAGCTT+TGG | + | 15251:13414-13433 | MS.gene35533:CDS | 50.0% | |
| CTGCCAGCGCAGAAAATCTT+AGG | - | 15251:11834-11853 | MS.gene35533:intergenic | 50.0% | |
| GATGTATCCGAGAAGGAAGG+TGG | + | 15251:13262-13281 | MS.gene35533:CDS | 50.0% | |
| GCTGGCTAAGCATGATACCT+GGG | - | 15251:9894-9913 | MS.gene35533:intergenic | 50.0% | |
| GGAAGGTGGGGTCTATGATA+AGG | + | 15251:13276-13295 | MS.gene35533:CDS | 50.0% | |
| TGTATCCGAGAAGGAAGGTG+GGG | + | 15251:13264-13283 | MS.gene35533:CDS | 50.0% | |
| TTGGCCAAATTGCCACCAAG+TGG | + | 15251:11013-11032 | MS.gene35533:intron | 50.0% | |
| ! | CGGAAAGAGCTTTGTGAGTG+AGG | - | 15251:9779-9798 | MS.gene35533:intergenic | 50.0% |
| ! | GCCTCGCCAATTTTACGGAT+AGG | - | 15251:12337-12356 | MS.gene35533:intergenic | 50.0% |
| ! | TAGCACGTTTAGGACCCGTT+TGG | - | 15251:10488-10507 | MS.gene35533:intergenic | 50.0% |
| !! | AATTGGCGAGGCTCTGAAGA+AGG | + | 15251:12345-12364 | MS.gene35533:CDS | 50.0% |
| !! | CTAAGATTTTCTGCGCTGGC+AGG | + | 15251:11832-11851 | MS.gene35533:intron | 50.0% |
| !! | GAGAGCCAAAGCTTTTTCCG+AGG | - | 15251:13422-13441 | MS.gene35533:intergenic | 50.0% |
| !! | GGAAAAAGCTTTGGCTCTCG+AGG | + | 15251:13423-13442 | MS.gene35533:CDS | 50.0% |
| GCTACAGAACCAAGCGCCTA+AGG | + | 15251:13594-13613 | MS.gene35533:CDS | 55.0% | |
| GGGAAAGCTGGAACCAGAAG+AGG | - | 15251:12467-12486 | MS.gene35533:intergenic | 55.0% | |
| AAAGGACGACGGCAAGCCCT+CGG | + | 15251:13402-13421 | MS.gene35533:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15251 | gene | 9702 | 13747 | 9702 | ID=MS.gene35533 |
| 15251 | mRNA | 9702 | 13747 | 9702 | ID=MS.gene35533.t1;Parent=MS.gene35533 |
| 15251 | exon | 9702 | 9800 | 9702 | ID=MS.gene35533.t1.exon1;Parent=MS.gene35533.t1 |
| 15251 | CDS | 9702 | 9800 | 9702 | ID=cds.MS.gene35533.t1;Parent=MS.gene35533.t1 |
| 15251 | exon | 9896 | 9967 | 9896 | ID=MS.gene35533.t1.exon2;Parent=MS.gene35533.t1 |
| 15251 | CDS | 9896 | 9967 | 9896 | ID=cds.MS.gene35533.t1;Parent=MS.gene35533.t1 |
| 15251 | exon | 10068 | 10160 | 10068 | ID=MS.gene35533.t1.exon3;Parent=MS.gene35533.t1 |
| 15251 | CDS | 10068 | 10160 | 10068 | ID=cds.MS.gene35533.t1;Parent=MS.gene35533.t1 |
| 15251 | exon | 11502 | 11583 | 11502 | ID=MS.gene35533.t1.exon4;Parent=MS.gene35533.t1 |
| 15251 | CDS | 11502 | 11583 | 11502 | ID=cds.MS.gene35533.t1;Parent=MS.gene35533.t1 |
| 15251 | exon | 11738 | 11794 | 11738 | ID=MS.gene35533.t1.exon5;Parent=MS.gene35533.t1 |
| 15251 | CDS | 11738 | 11794 | 11738 | ID=cds.MS.gene35533.t1;Parent=MS.gene35533.t1 |
| 15251 | exon | 12320 | 12384 | 12320 | ID=MS.gene35533.t1.exon6;Parent=MS.gene35533.t1 |
| 15251 | CDS | 12320 | 12384 | 12320 | ID=cds.MS.gene35533.t1;Parent=MS.gene35533.t1 |
| 15251 | exon | 12480 | 12575 | 12480 | ID=MS.gene35533.t1.exon7;Parent=MS.gene35533.t1 |
| 15251 | CDS | 12480 | 12575 | 12480 | ID=cds.MS.gene35533.t1;Parent=MS.gene35533.t1 |
| 15251 | exon | 12730 | 12816 | 12730 | ID=MS.gene35533.t1.exon8;Parent=MS.gene35533.t1 |
| 15251 | CDS | 12730 | 12816 | 12730 | ID=cds.MS.gene35533.t1;Parent=MS.gene35533.t1 |
| 15251 | exon | 12903 | 12983 | 12903 | ID=MS.gene35533.t1.exon9;Parent=MS.gene35533.t1 |
| 15251 | CDS | 12903 | 12983 | 12903 | ID=cds.MS.gene35533.t1;Parent=MS.gene35533.t1 |
| 15251 | exon | 13073 | 13747 | 13073 | ID=MS.gene35533.t1.exon10;Parent=MS.gene35533.t1 |
| 15251 | CDS | 13073 | 13747 | 13073 | ID=cds.MS.gene35533.t1;Parent=MS.gene35533.t1 |
| Gene Sequence |
| Protein sequence |
