Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37320.t1 | XP_003626243.1 | 94.4 | 319 | 18 | 0 | 1 | 319 | 1 | 319 | 5.50E-182 | 646.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37320.t1 | I6YGS0 | 36.9 | 320 | 182 | 7 | 7 | 316 | 7 | 316 | 3.7e-54 | 213.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37320.t1 | A2Q320 | 94.4 | 319 | 18 | 0 | 1 | 319 | 1 | 319 | 4.0e-182 | 646.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37320 | MS.gene035369 | PPI |
| MS.gene071504 | MS.gene37320 | PPI |
| MS.gene066360 | MS.gene37320 | PPI |
| MS.gene37320 | MS.gene035373 | PPI |
| MS.gene89620 | MS.gene37320 | PPI |
| MS.gene37320 | MS.gene012063 | PPI |
| MS.gene37320 | MS.gene035371 | PPI |
| MS.gene37320 | MS.gene071502 | PPI |
| MS.gene76453 | MS.gene37320 | PPI |
| MS.gene37320 | MS.gene07001 | PPI |
| MS.gene37320 | MS.gene066361 | PPI |
| MS.gene035367 | MS.gene37320 | PPI |
| MS.gene37320 | MS.gene071500 | PPI |
| MS.gene37320 | MS.gene041604 | PPI |
| MS.gene37320 | MS.gene025707 | PPI |
| MS.gene77823 | MS.gene37320 | PPI |
| MS.gene37320 | MS.gene22955 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37320.t1 | MTR_7g113020 | 94.357 | 319 | 18 | 0 | 1 | 319 | 1 | 319 | 0.0 | 632 |
| MS.gene37320.t1 | MTR_7g112615 | 91.850 | 319 | 26 | 0 | 1 | 319 | 1 | 319 | 0.0 | 619 |
| MS.gene37320.t1 | MTR_7g113050 | 89.969 | 319 | 32 | 0 | 1 | 319 | 1 | 319 | 0.0 | 613 |
| MS.gene37320.t1 | MTR_7g113030 | 89.655 | 319 | 33 | 0 | 1 | 319 | 1 | 319 | 0.0 | 608 |
| MS.gene37320.t1 | MTR_7g112620 | 89.342 | 319 | 34 | 0 | 1 | 319 | 1 | 319 | 0.0 | 608 |
| MS.gene37320.t1 | MTR_7g112960 | 77.882 | 321 | 67 | 2 | 1 | 319 | 1 | 319 | 0.0 | 529 |
| MS.gene37320.t1 | MTR_7g112963 | 78.505 | 321 | 65 | 2 | 1 | 319 | 1 | 319 | 0.0 | 528 |
| MS.gene37320.t1 | MTR_7g112970 | 76.176 | 319 | 73 | 2 | 1 | 319 | 1 | 316 | 0.0 | 522 |
| MS.gene37320.t1 | MTR_4g005160 | 73.065 | 323 | 82 | 3 | 1 | 319 | 1 | 322 | 0.0 | 511 |
| MS.gene37320.t1 | MTR_7g112615 | 91.176 | 238 | 21 | 0 | 1 | 238 | 1 | 238 | 2.12e-166 | 462 |
| MS.gene37320.t1 | MTR_7g113050 | 89.496 | 238 | 25 | 0 | 1 | 238 | 1 | 238 | 6.56e-165 | 458 |
| MS.gene37320.t1 | MTR_7g113010 | 72.085 | 283 | 75 | 2 | 1 | 281 | 1 | 281 | 2.15e-152 | 440 |
| MS.gene37320.t1 | MTR_4g120240 | 62.305 | 321 | 117 | 3 | 1 | 319 | 37 | 355 | 2.28e-148 | 421 |
| MS.gene37320.t1 | MTR_7g108825 | 61.129 | 319 | 122 | 2 | 1 | 319 | 1 | 317 | 2.31e-144 | 409 |
| MS.gene37320.t1 | MTR_7g112615 | 93.082 | 159 | 11 | 0 | 1 | 159 | 1 | 159 | 5.12e-108 | 312 |
| MS.gene37320.t1 | MTR_8g076680 | 47.022 | 319 | 165 | 3 | 1 | 319 | 3 | 317 | 4.57e-106 | 312 |
| MS.gene37320.t1 | MTR_7g108825 | 59.244 | 238 | 95 | 2 | 1 | 238 | 1 | 236 | 9.32e-100 | 293 |
| MS.gene37320.t1 | MTR_7g112910 | 59.438 | 249 | 46 | 5 | 72 | 319 | 1 | 195 | 9.40e-93 | 274 |
| MS.gene37320.t1 | MTR_1g083480 | 75.472 | 159 | 35 | 2 | 1 | 156 | 1 | 158 | 4.50e-87 | 259 |
| MS.gene37320.t1 | MTR_8g076680 | 47.899 | 238 | 122 | 2 | 1 | 238 | 3 | 238 | 3.77e-81 | 246 |
| MS.gene37320.t1 | MTR_2g090240 | 36.449 | 321 | 190 | 7 | 1 | 318 | 1 | 310 | 2.22e-67 | 213 |
| MS.gene37320.t1 | MTR_4g089060 | 36.137 | 321 | 190 | 6 | 1 | 318 | 1 | 309 | 2.80e-65 | 208 |
| MS.gene37320.t1 | MTR_2g090245 | 34.891 | 321 | 195 | 7 | 1 | 318 | 1 | 310 | 3.08e-64 | 205 |
| MS.gene37320.t1 | MTR_4g089040 | 35.514 | 321 | 192 | 6 | 1 | 318 | 1 | 309 | 7.45e-63 | 202 |
| MS.gene37320.t1 | MTR_4g089060 | 33.621 | 348 | 189 | 7 | 1 | 318 | 1 | 336 | 4.63e-60 | 195 |
| MS.gene37320.t1 | MTR_3g024250 | 81.132 | 106 | 20 | 0 | 47 | 152 | 2 | 107 | 2.34e-59 | 187 |
| MS.gene37320.t1 | MTR_4g089060 | 38.627 | 233 | 134 | 3 | 1 | 231 | 1 | 226 | 2.17e-53 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37320.t1 | AT3G05600 | 63.580 | 324 | 113 | 4 | 1 | 319 | 1 | 324 | 9.75e-158 | 444 |
| MS.gene37320.t1 | AT4G02340 | 58.879 | 321 | 125 | 4 | 1 | 319 | 1 | 316 | 3.74e-143 | 407 |
| MS.gene37320.t1 | AT2G26740 | 62.733 | 322 | 113 | 4 | 4 | 319 | 1 | 321 | 7.75e-135 | 385 |
| MS.gene37320.t1 | AT4G15960 | 53.846 | 325 | 143 | 3 | 1 | 319 | 51 | 374 | 4.63e-129 | 373 |
| MS.gene37320.t1 | AT2G26750 | 60.748 | 321 | 120 | 4 | 4 | 319 | 1 | 320 | 1.04e-128 | 370 |
| MS.gene37320.t1 | AT3G05600 | 64.609 | 243 | 81 | 4 | 1 | 238 | 1 | 243 | 2.08e-115 | 333 |
| MS.gene37320.t1 | AT4G15955 | 49.693 | 326 | 126 | 4 | 5 | 319 | 6 | 304 | 7.14e-110 | 322 |
| MS.gene37320.t1 | AT3G51000 | 45.566 | 327 | 157 | 6 | 3 | 319 | 4 | 319 | 3.15e-102 | 303 |
| MS.gene37320.t1 | AT4G15955 | 58.621 | 174 | 62 | 2 | 5 | 168 | 6 | 179 | 4.14e-71 | 218 |
| MS.gene37320.t1 | AT4G15955 | 58.182 | 165 | 59 | 2 | 5 | 159 | 6 | 170 | 1.81e-66 | 206 |
Find 84 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGGCTTTGATTCTTTC+AGG | 0.119767 | 7.2:+4239714 | None:intergenic |
| CAAGGAAGATGTGCCGAATT+TGG | 0.238850 | 7.2:-4238671 | MS.gene37320:CDS |
| TTATTATATATGCAGATTTC+AGG | 0.249339 | 7.2:-4239613 | MS.gene37320:intron |
| AGCCAAGTGGGCAAGGTGTC+AGG | 0.263626 | 7.2:+4239040 | None:intergenic |
| GTCTCCAAATTTGAGAAAAC+TGG | 0.263633 | 7.2:-4238992 | MS.gene37320:CDS |
| GAAATTCATTACAGGTGATT+TGG | 0.277422 | 7.2:-4238746 | MS.gene37320:CDS |
| TTAGGGTTTCTACGCGTAAA+TGG | 0.282040 | 7.2:+4239678 | None:intergenic |
| TGCAAAGATACCAACCAATT+AGG | 0.292935 | 7.2:+4239745 | None:intergenic |
| CATTACAGGTGATTTGGATA+TGG | 0.296487 | 7.2:-4238740 | MS.gene37320:CDS |
| ATACTTCCCAAGGGAGAGTT+TGG | 0.318913 | 7.2:-4239085 | MS.gene37320:CDS |
| CATGATTGGGGTGCCCTAAT+TGG | 0.343119 | 7.2:-4239759 | MS.gene37320:CDS |
| CCTAAAATCAGAACTGTTGA+TGG | 0.347446 | 7.2:-4239660 | MS.gene37320:CDS |
| CCCCTGACACCTTGCCCACT+TGG | 0.359209 | 7.2:-4239042 | MS.gene37320:CDS |
| TGTTTCTTGTAGCTCATGAT+TGG | 0.362025 | 7.2:-4239773 | MS.gene37320:CDS |
| GTCCTCACAACTCGCAAAAC+TGG | 0.362682 | 7.2:-4239115 | MS.gene37320:CDS |
| GATGGCATGCGTGCTGCTTA+TGG | 0.363820 | 7.2:-4239642 | MS.gene37320:CDS |
| CGCCAAGAGTACCAGAGTTC+AGG | 0.381681 | 7.2:+4239957 | None:intergenic |
| CGCCACCAGATTGCTGCTCT+CGG | 0.393921 | 7.2:-4239936 | MS.gene37320:CDS |
| CCCAAGGGAGAGTTTGGAAC+TGG | 0.394498 | 7.2:-4239079 | MS.gene37320:CDS |
| GTTTCTTGTAGCTCATGATT+GGG | 0.395980 | 7.2:-4239772 | MS.gene37320:CDS |
| GCAAAGATACCAACCAATTA+GGG | 0.397770 | 7.2:+4239746 | None:intergenic |
| ACAATCACTTCCTCCAAATT+CGG | 0.398594 | 7.2:+4238658 | None:intergenic |
| TCACCGTAGCCACGAAGATC+TGG | 0.407123 | 7.2:+4239888 | None:intergenic |
| GAGGAAGTGATTGTGCAAAA+AGG | 0.414023 | 7.2:-4238649 | MS.gene37320:CDS |
| GGCAAGGTGTCAGGGGTATC+CGG | 0.423975 | 7.2:+4239049 | None:intergenic |
| CCTGTTGTCCTGTTCCTTCA+CGG | 0.424309 | 7.2:-4239984 | MS.gene37320:CDS |
| GTGCCTGTGAAATTCATTAC+AGG | 0.432209 | 7.2:-4238754 | MS.gene37320:CDS |
| CATAGGCTTTGATTCTTTCA+GGG | 0.432762 | 7.2:+4239715 | None:intergenic |
| CTAATTGTATTGCAGAAATT+GGG | 0.433325 | 7.2:-4238812 | MS.gene37320:intron |
| AACTCTCCCTTGGGAAGTAT+TGG | 0.434048 | 7.2:+4239088 | None:intergenic |
| TTCCTGAACTCTGGTACTCT+TGG | 0.435109 | 7.2:-4239959 | MS.gene37320:CDS |
| GAGAGCCGAGAGCAGCAATC+TGG | 0.444182 | 7.2:+4239931 | None:intergenic |
| TCCAGTTCCAAACTCTCCCT+TGG | 0.447351 | 7.2:+4239078 | None:intergenic |
| TTTGAGAAAACTGGCTTCAC+CGG | 0.453864 | 7.2:-4238983 | MS.gene37320:CDS |
| CAGGAAAGCCGTGAAGGAAC+AGG | 0.460850 | 7.2:+4239976 | None:intergenic |
| GTTGCTCTCATCGACTTGCT+TGG | 0.464883 | 7.2:-4239807 | MS.gene37320:CDS |
| ATTGCTGCTCTCGGCTCTCT+CGG | 0.478105 | 7.2:-4239927 | MS.gene37320:CDS |
| CCGTGAAGGAACAGGACAAC+AGG | 0.481846 | 7.2:+4239984 | None:intergenic |
| AAAATGCATATTGCAGAGAA+AGG | 0.487741 | 7.2:-4240017 | MS.gene37320:CDS |
| TATCCATGGTGGAGGATTCA+AGG | 0.490724 | 7.2:-4238689 | MS.gene37320:CDS |
| CCAGTTCCAAACTCTCCCTT+GGG | 0.499868 | 7.2:+4239079 | None:intergenic |
| TTCACGGCTTTCCTGAACTC+TGG | 0.502205 | 7.2:-4239968 | MS.gene37320:CDS |
| GCTCCAGATCTTCGTGGCTA+CGG | 0.504735 | 7.2:-4239891 | MS.gene37320:CDS |
| TCTCCCTTGGGAAGTATTGG+AGG | 0.509088 | 7.2:+4239091 | None:intergenic |
| TTCTGTGAGCCAAGTGGGCA+AGG | 0.510522 | 7.2:+4239033 | None:intergenic |
| CACAGAACAGTGGAAGTGAA+TGG | 0.515742 | 7.2:-4240044 | MS.gene37320:CDS |
| GTTTGGAACTGGATTCAATC+CGG | 0.516376 | 7.2:-4239068 | MS.gene37320:CDS |
| GCTGTTGCTCCAGATCTTCG+TGG | 0.527210 | 7.2:-4239897 | MS.gene37320:CDS |
| TCTATAGTAATTCAATCCTC+CGG | 0.539260 | 7.2:+4238964 | None:intergenic |
| TTATCTATATTACAGGAACC+TGG | 0.544877 | 7.2:-4239190 | MS.gene37320:intron |
| ATTGCAGAGAAAGGAAAAGA+AGG | 0.548522 | 7.2:-4240008 | MS.gene37320:CDS |
| CTACGGTGACACCGATGCTC+CGG | 0.550138 | 7.2:-4239874 | MS.gene37320:CDS |
| GCCAAGTGGGCAAGGTGTCA+GGG | 0.551540 | 7.2:+4239041 | None:intergenic |
| AATAGAAGCTGAGATAGCTC+AGG | 0.557396 | 7.2:-4239164 | MS.gene37320:CDS |
| GCGTAGCTGCTAATCGAAGC+CGG | 0.557719 | 7.2:+4239855 | None:intergenic |
| TCATCTTCTGTGAGCCAAGT+GGG | 0.568184 | 7.2:+4239028 | None:intergenic |
| AGCCGAGAGCAGCAATCTGG+TGG | 0.568882 | 7.2:+4239934 | None:intergenic |
| TCACCTGTAATGAATTTCAC+AGG | 0.570947 | 7.2:+4238751 | None:intergenic |
| TGGTCCTCCAATACTTCCCA+AGG | 0.570977 | 7.2:-4239095 | MS.gene37320:CDS |
| ATTGGGGTGCCCTAATTGGT+TGG | 0.573060 | 7.2:-4239755 | MS.gene37320:CDS |
| GGAAGATGTGCCGAATTTGG+AGG | 0.573365 | 7.2:-4238668 | MS.gene37320:CDS |
| CAACAATCAAGAAGCTGCAG+AGG | 0.574119 | 7.2:-4238614 | MS.gene37320:CDS |
| GCTAATCGAAGCCGGAGCAT+CGG | 0.580714 | 7.2:+4239863 | None:intergenic |
| AAGGAGTATATCCATGGTGG+AGG | 0.581533 | 7.2:-4238697 | MS.gene37320:CDS |
| TGGAACACTGAGACAAACAT+AGG | 0.583516 | 7.2:+4239698 | None:intergenic |
| TTTCTTGTAGCTCATGATTG+GGG | 0.597857 | 7.2:-4239771 | MS.gene37320:CDS |
| ATGGAGTGGAGTGAAAATCA+AGG | 0.603056 | 7.2:-4238776 | MS.gene37320:CDS |
| GAGAAAACTGGCTTCACCGG+AGG | 0.603917 | 7.2:-4238980 | MS.gene37320:CDS |
| TCTCATCGACTTGCTTGGTG+TGG | 0.620782 | 7.2:-4239802 | MS.gene37320:CDS |
| CATGTGAAGGAGTATATCCA+TGG | 0.624062 | 7.2:-4238703 | MS.gene37320:CDS |
| GTACACCTCGCCACATGTGA+AGG | 0.626457 | 7.2:-4238716 | MS.gene37320:CDS |
| CCAAGTGGGCAAGGTGTCAG+GGG | 0.627753 | 7.2:+4239042 | None:intergenic |
| AGAGTTCAGGAAAGCCGTGA+AGG | 0.628117 | 7.2:+4239970 | None:intergenic |
| GAGCTCACAGCACCATGGAG+TGG | 0.632984 | 7.2:-4238790 | MS.gene37320:CDS |
| TGGATATACTCCTTCACATG+TGG | 0.645588 | 7.2:+4238706 | None:intergenic |
| GAAGCTGAGATAGCTCAGGT+TGG | 0.661961 | 7.2:-4239160 | MS.gene37320:CDS |
| ATCATCTTCTGTGAGCCAAG+TGG | 0.662860 | 7.2:+4239027 | None:intergenic |
| ATACTCCTTCACATGTGGCG+AGG | 0.664549 | 7.2:+4238711 | None:intergenic |
| ATTGGGAGCTCACAGCACCA+TGG | 0.668315 | 7.2:-4238795 | MS.gene37320:CDS |
| AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.2:-4240054 | MS.gene37320:CDS |
| GAAGATCTGGAGCAACAGCA+CGG | 0.677123 | 7.2:+4239901 | None:intergenic |
| CTTCCTTGAATCCTCCACCA+TGG | 0.680547 | 7.2:+4238686 | None:intergenic |
| GGTCCTCCAATACTTCCCAA+GGG | 0.690564 | 7.2:-4239094 | MS.gene37320:CDS |
| GTGAAGGAGTATATCCATGG+TGG | 0.691244 | 7.2:-4238700 | MS.gene37320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAATCAATTATGTTAAT+CGG | + | chr7.2:4239096-4239115 | None:intergenic | 15.0% |
| !! | ATCAATTATTAAGAATTACT+AGG | + | chr7.2:4239069-4239088 | None:intergenic | 15.0% |
| !!! | GAATAATTTAACAAAGTATT+AGG | - | chr7.2:4239238-4239257 | MS.gene37320:intron | 15.0% |
| !!! | TTGTTTTTTATCTATATTAC+AGG | - | chr7.2:4239435-4239454 | MS.gene37320:intron | 15.0% |
| !! | AATGATTCCAAATATTATAC+TGG | + | chr7.2:4239355-4239374 | None:intergenic | 20.0% |
| !! | AGTTTAAATTATTCACAAAC+AGG | + | chr7.2:4239189-4239208 | None:intergenic | 20.0% |
| !! | ATATTTGTCGAAAACAATTA+TGG | + | chr7.2:4239729-4239748 | None:intergenic | 20.0% |
| !! | ATTACTAGGAATATTAGTTA+TGG | + | chr7.2:4239055-4239074 | None:intergenic | 20.0% |
| !! | GTTTGTGAATAATTTAAACT+AGG | - | chr7.2:4239189-4239208 | MS.gene37320:intron | 20.0% |
| !! | TTATTATATATGCAGATTTC+AGG | - | chr7.2:4239019-4239038 | MS.gene37320:CDS | 20.0% |
| !!! | ATAAATCAACTATCCTTTTT+GGG | - | chr7.2:4239747-4239766 | MS.gene37320:CDS | 20.0% |
| !!! | TATAAATCAACTATCCTTTT+TGG | - | chr7.2:4239746-4239765 | MS.gene37320:CDS | 20.0% |
| ! | ACTAATTGTATTGCAGAAAT+TGG | - | chr7.2:4239819-4239838 | MS.gene37320:CDS | 25.0% |
| ! | CTAATTGTATTGCAGAAATT+GGG | - | chr7.2:4239820-4239839 | MS.gene37320:CDS | 25.0% |
| ! | GTTTAACTGTCATTAGAATT+CGG | + | chr7.2:4239801-4239820 | None:intergenic | 25.0% |
| ! | TGATACATGAGAATTAAACA+AGG | - | chr7.2:4239267-4239286 | MS.gene37320:intron | 25.0% |
| !! | TAAATCAACTATCCTTTTTG+GGG | - | chr7.2:4239748-4239767 | MS.gene37320:CDS | 25.0% |
| AAAATGCATATTGCAGAGAA+AGG | - | chr7.2:4238615-4238634 | MS.gene37320:CDS | 30.0% | |
| GAAATTCATTACAGGTGATT+TGG | - | chr7.2:4239886-4239905 | MS.gene37320:CDS | 30.0% | |
| GAATTGCTATAATGGTAGAT+AGG | - | chr7.2:4239402-4239421 | MS.gene37320:intron | 30.0% | |
| TAATTAATCTCACGCTTCTA+TGG | - | chr7.2:4239120-4239139 | MS.gene37320:CDS | 30.0% | |
| TCTATAGTAATTCAATCCTC+CGG | + | chr7.2:4239671-4239690 | None:intergenic | 30.0% | |
| TCTTGTCAATTTAGATTGAG+TGG | - | chr7.2:4239297-4239316 | MS.gene37320:intron | 30.0% | |
| TGAAGTGAGAATTGCTATAA+TGG | - | chr7.2:4239394-4239413 | MS.gene37320:intron | 30.0% | |
| TTATCTATATTACAGGAACC+TGG | - | chr7.2:4239442-4239461 | MS.gene37320:intron | 30.0% | |
| !! | CATCAACAGTTCTGATTTTA+GGG | + | chr7.2:4238974-4238993 | None:intergenic | 30.0% |
| ACAATCACTTCCTCCAAATT+CGG | + | chr7.2:4239977-4239996 | None:intergenic | 35.0% | |
| ATTGCAGAGAAAGGAAAAGA+AGG | - | chr7.2:4238624-4238643 | MS.gene37320:CDS | 35.0% | |
| CCTAAAATCAGAACTGTTGA+TGG | - | chr7.2:4238972-4238991 | MS.gene37320:CDS | 35.0% | |
| GCAAAGATACCAACCAATTA+GGG | + | chr7.2:4238889-4238908 | None:intergenic | 35.0% | |
| GCACAAATATTTCCCCAAAA+AGG | + | chr7.2:4239763-4239782 | None:intergenic | 35.0% | |
| GTCTCCAAATTTGAGAAAAC+TGG | - | chr7.2:4239640-4239659 | MS.gene37320:CDS | 35.0% | |
| GTTTCTTGTAGCTCATGATT+GGG | - | chr7.2:4238860-4238879 | MS.gene37320:intron | 35.0% | |
| TCACCTGTAATGAATTTCAC+AGG | + | chr7.2:4239884-4239903 | None:intergenic | 35.0% | |
| TGCAAAGATACCAACCAATT+AGG | + | chr7.2:4238890-4238909 | None:intergenic | 35.0% | |
| TGGAGCTCCAGTATAATATT+TGG | - | chr7.2:4239345-4239364 | MS.gene37320:intron | 35.0% | |
| TGTTTCTTGTAGCTCATGAT+TGG | - | chr7.2:4238859-4238878 | MS.gene37320:intron | 35.0% | |
| TTTCTTGTAGCTCATGATTG+GGG | - | chr7.2:4238861-4238880 | MS.gene37320:intron | 35.0% | |
| ! | ACATAGGCTTTGATTCTTTC+AGG | + | chr7.2:4238921-4238940 | None:intergenic | 35.0% |
| ! | CATAGGCTTTGATTCTTTCA+GGG | + | chr7.2:4238920-4238939 | None:intergenic | 35.0% |
| ! | CATTACAGGTGATTTGGATA+TGG | - | chr7.2:4239892-4239911 | MS.gene37320:CDS | 35.0% |
| ! | GAAGCCAGTTTTCTCAAATT+TGG | + | chr7.2:4239647-4239666 | None:intergenic | 35.0% |
| ! | GATGATGGTGTGTTATGTTA+TGG | - | chr7.2:4239325-4239344 | MS.gene37320:intron | 35.0% |
| ! | TACGCATGTTTTCACATAGT+AGG | - | chr7.2:4238795-4238814 | MS.gene37320:CDS | 35.0% |
| !! | CCATCAACAGTTCTGATTTT+AGG | + | chr7.2:4238975-4238994 | None:intergenic | 35.0% |
| AATAGAAGCTGAGATAGCTC+AGG | - | chr7.2:4239468-4239487 | MS.gene37320:intron | 40.0% | |
| AGGAATAGAACACAGAACAG+TGG | - | chr7.2:4238578-4238597 | MS.gene37320:CDS | 40.0% | |
| ATGGAGTGGAGTGAAAATCA+AGG | - | chr7.2:4239856-4239875 | MS.gene37320:CDS | 40.0% | |
| GAGGAAGTGATTGTGCAAAA+AGG | - | chr7.2:4239983-4240002 | MS.gene37320:CDS | 40.0% | |
| GATTGAGTGGTGTTTGATGA+TGG | - | chr7.2:4239310-4239329 | MS.gene37320:intron | 40.0% | |
| GTGCCTGTGAAATTCATTAC+AGG | - | chr7.2:4239878-4239897 | MS.gene37320:CDS | 40.0% | |
| TGGAACACTGAGACAAACAT+AGG | + | chr7.2:4238937-4238956 | None:intergenic | 40.0% | |
| TGGATATACTCCTTCACATG+TGG | + | chr7.2:4239929-4239948 | None:intergenic | 40.0% | |
| TTAGGGTTTCTACGCGTAAA+TGG | + | chr7.2:4238957-4238976 | None:intergenic | 40.0% | |
| ! | ATCTCAGCTTCTATTTTGCC+AGG | + | chr7.2:4239463-4239482 | None:intergenic | 40.0% |
| ! | CATGTGAAGGAGTATATCCA+TGG | - | chr7.2:4239929-4239948 | MS.gene37320:CDS | 40.0% |
| ! | GTTTGGAACTGGATTCAATC+CGG | - | chr7.2:4239564-4239583 | MS.gene37320:intron | 40.0% |
| ! | TTGATTTTCACTCCACTCCA+TGG | + | chr7.2:4239857-4239876 | None:intergenic | 40.0% |
| ! | TTTGAGAAAACTGGCTTCAC+CGG | - | chr7.2:4239649-4239668 | MS.gene37320:CDS | 40.0% |
| ATACTTCCCAAGGGAGAGTT+TGG | - | chr7.2:4239547-4239566 | MS.gene37320:intron | 45.0% | |
| ATCATCTTCTGTGAGCCAAG+TGG | + | chr7.2:4239608-4239627 | None:intergenic | 45.0% | |
| CAACAATCAAGAAGCTGCAG+AGG | - | chr7.2:4240018-4240037 | MS.gene37320:CDS | 45.0% | |
| CAAGGAAGATGTGCCGAATT+TGG | - | chr7.2:4239961-4239980 | MS.gene37320:CDS | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | - | chr7.2:4238588-4238607 | MS.gene37320:CDS | 45.0% | |
| GGGGAAATATTTGTGCAAGC+AGG | - | chr7.2:4239767-4239786 | MS.gene37320:CDS | 45.0% | |
| TCATCTTCTGTGAGCCAAGT+GGG | + | chr7.2:4239607-4239626 | None:intergenic | 45.0% | |
| TTCCTGAACTCTGGTACTCT+TGG | - | chr7.2:4238673-4238692 | MS.gene37320:CDS | 45.0% | |
| ! | AACTCTCCCTTGGGAAGTAT+TGG | + | chr7.2:4239547-4239566 | None:intergenic | 45.0% |
| ! | AAGGAGTATATCCATGGTGG+AGG | - | chr7.2:4239935-4239954 | MS.gene37320:CDS | 45.0% |
| ! | GTGAAGGAGTATATCCATGG+TGG | - | chr7.2:4239932-4239951 | MS.gene37320:CDS | 45.0% |
| ! | TATCCATGGTGGAGGATTCA+AGG | - | chr7.2:4239943-4239962 | MS.gene37320:CDS | 45.0% |
| AGAGTTCAGGAAAGCCGTGA+AGG | + | chr7.2:4238665-4238684 | None:intergenic | 50.0% | |
| ATACTCCTTCACATGTGGCG+AGG | + | chr7.2:4239924-4239943 | None:intergenic | 50.0% | |
| CCAGTTCCAAACTCTCCCTT+GGG | + | chr7.2:4239556-4239575 | None:intergenic | 50.0% | |
| CCTGTTGTCCTGTTCCTTCA+CGG | - | chr7.2:4238648-4238667 | MS.gene37320:CDS | 50.0% | |
| CTCACGCTTCTATGGTGTGT+TGG | - | chr7.2:4239128-4239147 | MS.gene37320:CDS | 50.0% | |
| CTTCCTTGAATCCTCCACCA+TGG | + | chr7.2:4239949-4239968 | None:intergenic | 50.0% | |
| GAAGCTGAGATAGCTCAGGT+TGG | - | chr7.2:4239472-4239491 | MS.gene37320:intron | 50.0% | |
| GGAAGATGTGCCGAATTTGG+AGG | - | chr7.2:4239964-4239983 | MS.gene37320:CDS | 50.0% | |
| GGTCCTCCAATACTTCCCAA+GGG | - | chr7.2:4239538-4239557 | MS.gene37320:intron | 50.0% | |
| GTCCTCACAACTCGCAAAAC+TGG | - | chr7.2:4239517-4239536 | MS.gene37320:intron | 50.0% | |
| TCCAGTTCCAAACTCTCCCT+TGG | + | chr7.2:4239557-4239576 | None:intergenic | 50.0% | |
| TGGTCCTCCAATACTTCCCA+AGG | - | chr7.2:4239537-4239556 | MS.gene37320:intron | 50.0% | |
| TTCACGGCTTTCCTGAACTC+TGG | - | chr7.2:4238664-4238683 | MS.gene37320:CDS | 50.0% | |
| ! | ATTGGGGTGCCCTAATTGGT+TGG | - | chr7.2:4238877-4238896 | MS.gene37320:intron | 50.0% |
| ! | CATGATTGGGGTGCCCTAAT+TGG | - | chr7.2:4238873-4238892 | MS.gene37320:intron | 50.0% |
| ! | GAAGATCTGGAGCAACAGCA+CGG | + | chr7.2:4238734-4238753 | None:intergenic | 50.0% |
| ! | GACCAGTTTTGCGAGTTGTG+AGG | + | chr7.2:4239522-4239541 | None:intergenic | 50.0% |
| !! | GTTGCTCTCATCGACTTGCT+TGG | - | chr7.2:4238825-4238844 | MS.gene37320:intron | 50.0% |
| !! | TCTCATCGACTTGCTTGGTG+TGG | - | chr7.2:4238830-4238849 | MS.gene37320:intron | 50.0% |
| !! | TCTCCCTTGGGAAGTATTGG+AGG | + | chr7.2:4239544-4239563 | None:intergenic | 50.0% |
| ATTGCTGCTCTCGGCTCTCT+CGG | - | chr7.2:4238705-4238724 | MS.gene37320:CDS | 55.0% | |
| ATTGGGAGCTCACAGCACCA+TGG | - | chr7.2:4239837-4239856 | MS.gene37320:CDS | 55.0% | |
| CAGGAAAGCCGTGAAGGAAC+AGG | + | chr7.2:4238659-4238678 | None:intergenic | 55.0% | |
| CCGTGAAGGAACAGGACAAC+AGG | + | chr7.2:4238651-4238670 | None:intergenic | 55.0% | |
| GCGTAGCTGCTAATCGAAGC+CGG | + | chr7.2:4238780-4238799 | None:intergenic | 55.0% | |
| GCTAATCGAAGCCGGAGCAT+CGG | + | chr7.2:4238772-4238791 | None:intergenic | 55.0% | |
| GCTCCAGATCTTCGTGGCTA+CGG | - | chr7.2:4238741-4238760 | MS.gene37320:CDS | 55.0% | |
| GCTGTTGCTCCAGATCTTCG+TGG | - | chr7.2:4238735-4238754 | MS.gene37320:CDS | 55.0% | |
| GTACACCTCGCCACATGTGA+AGG | - | chr7.2:4239916-4239935 | MS.gene37320:CDS | 55.0% | |
| TCACCGTAGCCACGAAGATC+TGG | + | chr7.2:4238747-4238766 | None:intergenic | 55.0% | |
| TTCTGTGAGCCAAGTGGGCA+AGG | + | chr7.2:4239602-4239621 | None:intergenic | 55.0% | |
| ! | CCCAAGGGAGAGTTTGGAAC+TGG | - | chr7.2:4239553-4239572 | MS.gene37320:intron | 55.0% |
| ! | GAGAAAACTGGCTTCACCGG+AGG | - | chr7.2:4239652-4239671 | MS.gene37320:CDS | 55.0% |
| !! | CGCCAAGAGTACCAGAGTTC+AGG | + | chr7.2:4238678-4238697 | None:intergenic | 55.0% |
| !! | GATGGCATGCGTGCTGCTTA+TGG | - | chr7.2:4238990-4239009 | MS.gene37320:CDS | 55.0% |
| AGCCGAGAGCAGCAATCTGG+TGG | + | chr7.2:4238701-4238720 | None:intergenic | 60.0% | |
| CGCCACCAGATTGCTGCTCT+CGG | - | chr7.2:4238696-4238715 | MS.gene37320:CDS | 60.0% | |
| CTACGGTGACACCGATGCTC+CGG | - | chr7.2:4238758-4238777 | MS.gene37320:CDS | 60.0% | |
| GAGAGCCGAGAGCAGCAATC+TGG | + | chr7.2:4238704-4238723 | None:intergenic | 60.0% | |
| GAGCTCACAGCACCATGGAG+TGG | - | chr7.2:4239842-4239861 | MS.gene37320:CDS | 60.0% | |
| ! | AGCCAAGTGGGCAAGGTGTC+AGG | + | chr7.2:4239595-4239614 | None:intergenic | 60.0% |
| ! | CCAAGTGGGCAAGGTGTCAG+GGG | + | chr7.2:4239593-4239612 | None:intergenic | 60.0% |
| ! | GCCAAGTGGGCAAGGTGTCA+GGG | + | chr7.2:4239594-4239613 | None:intergenic | 60.0% |
| !! | GGCAAGGTGTCAGGGGTATC+CGG | + | chr7.2:4239586-4239605 | None:intergenic | 60.0% |
| CCCCTGACACCTTGCCCACT+TGG | - | chr7.2:4239590-4239609 | MS.gene37320:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 4238573 | 4240081 | 4238573 | ID=MS.gene37320 |
| chr7.2 | mRNA | 4238573 | 4240081 | 4238573 | ID=MS.gene37320.t1;Parent=MS.gene37320 |
| chr7.2 | exon | 4239614 | 4240081 | 4239614 | ID=MS.gene37320.t1.exon1;Parent=MS.gene37320.t1 |
| chr7.2 | CDS | 4239614 | 4240081 | 4239614 | ID=cds.MS.gene37320.t1;Parent=MS.gene37320.t1 |
| chr7.2 | exon | 4238953 | 4239197 | 4238953 | ID=MS.gene37320.t1.exon2;Parent=MS.gene37320.t1 |
| chr7.2 | CDS | 4238953 | 4239197 | 4238953 | ID=cds.MS.gene37320.t1;Parent=MS.gene37320.t1 |
| chr7.2 | exon | 4238573 | 4238819 | 4238573 | ID=MS.gene37320.t1.exon3;Parent=MS.gene37320.t1 |
| chr7.2 | CDS | 4238573 | 4238819 | 4238573 | ID=cds.MS.gene37320.t1;Parent=MS.gene37320.t1 |
| Gene Sequence |
| Protein sequence |
