Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37491.t1 | KEH35809.1 | 94.5 | 921 | 44 | 3 | 1 | 920 | 1 | 915 | 0.00E+00 | 1515.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37491.t1 | Q9H1I8 | 24.1 | 502 | 294 | 17 | 105 | 562 | 64 | 522 | 7.8e-20 | 100.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37491.t1 | A0A072V1C5 | 94.5 | 921 | 44 | 3 | 1 | 920 | 1 | 915 | 0.0e+00 | 1515.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene37491 | 0.813906 | 2.02E-51 | -1.69E-46 |
| MS.gene049283 | MS.gene37491 | 0.813001 | 3.19E-51 | -1.69E-46 |
| MS.gene049368 | MS.gene37491 | 0.800999 | 1.11E-48 | -1.69E-46 |
| MS.gene049983 | MS.gene37491 | 0.81299 | 3.21E-51 | -1.69E-46 |
| MS.gene050084 | MS.gene37491 | 0.850389 | 1.75E-60 | -1.69E-46 |
| MS.gene050085 | MS.gene37491 | 0.861261 | 1.16E-63 | -1.69E-46 |
| MS.gene050317 | MS.gene37491 | 0.823266 | 1.52E-53 | -1.69E-46 |
| MS.gene050359 | MS.gene37491 | 0.817503 | 3.19E-52 | -1.69E-46 |
| MS.gene050361 | MS.gene37491 | 0.822573 | 2.20E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene37491 | 0.832145 | 1.12E-55 | -1.69E-46 |
| MS.gene050654 | MS.gene37491 | 0.860859 | 1.54E-63 | -1.69E-46 |
| MS.gene050941 | MS.gene37491 | 0.804607 | 1.99E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene37491 | 0.8091 | 2.24E-50 | -1.69E-46 |
| MS.gene051381 | MS.gene37491 | 0.804313 | 2.29E-49 | -1.69E-46 |
| MS.gene052242 | MS.gene37491 | -0.801685 | 8.01E-49 | -1.69E-46 |
| MS.gene052342 | MS.gene37491 | 0.84123 | 5.39E-58 | -1.69E-46 |
| MS.gene052434 | MS.gene37491 | 0.826068 | 3.32E-54 | -1.69E-46 |
| MS.gene052609 | MS.gene37491 | 0.819424 | 1.17E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene37491 | 0.819538 | 1.10E-52 | -1.69E-46 |
| MS.gene053381 | MS.gene37491 | 0.805489 | 1.30E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene37491 | 0.804818 | 1.80E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene37491 | 0.821152 | 4.70E-53 | -1.69E-46 |
| MS.gene055314 | MS.gene37491 | 0.807395 | 5.16E-50 | -1.69E-46 |
| MS.gene056045 | MS.gene37491 | 0.831407 | 1.70E-55 | -1.69E-46 |
| MS.gene056097 | MS.gene37491 | 0.824893 | 6.31E-54 | -1.69E-46 |
| MS.gene056181 | MS.gene37491 | 0.836401 | 9.56E-57 | -1.69E-46 |
| MS.gene056480 | MS.gene37491 | 0.800013 | 1.76E-48 | -1.69E-46 |
| MS.gene056787 | MS.gene37491 | 0.818323 | 2.08E-52 | -1.69E-46 |
| MS.gene056849 | MS.gene37491 | 0.837982 | 3.77E-57 | -1.69E-46 |
| MS.gene057890 | MS.gene37491 | -0.820661 | 6.10E-53 | -1.69E-46 |
| MS.gene058054 | MS.gene37491 | 0.810109 | 1.36E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene37491 | 0.838117 | 3.48E-57 | -1.69E-46 |
| MS.gene058278 | MS.gene37491 | 0.815797 | 7.69E-52 | -1.69E-46 |
| MS.gene058292 | MS.gene37491 | 0.811743 | 6.01E-51 | -1.69E-46 |
| MS.gene058429 | MS.gene37491 | 0.80694 | 6.44E-50 | -1.69E-46 |
| MS.gene058638 | MS.gene37491 | 0.819177 | 1.33E-52 | -1.69E-46 |
| MS.gene058639 | MS.gene37491 | 0.826108 | 3.25E-54 | -1.69E-46 |
| MS.gene059007 | MS.gene37491 | 0.814511 | 1.48E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene37491 | 0.814913 | 1.21E-51 | -1.69E-46 |
| MS.gene06010 | MS.gene37491 | 0.830363 | 3.06E-55 | -1.69E-46 |
| MS.gene060296 | MS.gene37491 | 0.836242 | 1.05E-56 | -1.69E-46 |
| MS.gene060870 | MS.gene37491 | 0.810869 | 9.30E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene37491 | 0.800119 | 1.67E-48 | -1.69E-46 |
| MS.gene060933 | MS.gene37491 | 0.825032 | 5.85E-54 | -1.69E-46 |
| MS.gene060935 | MS.gene37491 | 0.805439 | 1.33E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene37491 | 0.814847 | 1.25E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37491.t1 | MTR_3g103040 | 97.286 | 921 | 18 | 3 | 1 | 920 | 1 | 915 | 0.0 | 1829 |
| MS.gene37491.t1 | MTR_3g103040 | 97.232 | 867 | 17 | 3 | 1 | 866 | 1 | 861 | 0.0 | 1716 |
| MS.gene37491.t1 | MTR_3g103040 | 98.343 | 724 | 11 | 1 | 198 | 920 | 1 | 724 | 0.0 | 1465 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37491.t1 | AT1G27752 | 51.549 | 904 | 368 | 14 | 1 | 866 | 1 | 872 | 0.0 | 719 |
| MS.gene37491.t1 | AT1G27752 | 49.107 | 672 | 294 | 10 | 212 | 866 | 15 | 655 | 1.02e-170 | 512 |
Find 215 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGAAGCTTCTTTAGTTAA+TGG | 0.135340 | 3.4:+90632766 | MS.gene37491:CDS |
| CTCCCTCTCCCTCTGTTATT+TGG | 0.136498 | 3.4:-90633030 | None:intergenic |
| TCAACAGCTTTCTGCAATTT+AGG | 0.158835 | 3.4:+90626355 | MS.gene37491:CDS |
| GACTTTCATGTGTTCTGTTT+TGG | 0.172138 | 3.4:+90633356 | MS.gene37491:CDS |
| GGTAACCAATTCCATGTTTC+TGG | 0.178074 | 3.4:+90632883 | MS.gene37491:CDS |
| CAGGCCTGATCCAAGTATTT+TGG | 0.209716 | 3.4:+90632447 | MS.gene37491:CDS |
| GAAGAAATGTTTCCTTCTTA+TGG | 0.219000 | 3.4:-90631583 | None:intergenic |
| ATTCTTTGAATGACCTCTTC+TGG | 0.235306 | 3.4:-90632148 | None:intergenic |
| GAACAACTTAAATATATATC+TGG | 0.239896 | 3.4:+90631935 | MS.gene37491:CDS |
| AAAACGCCTCTAATACAAAA+TGG | 0.245784 | 3.4:+90632656 | MS.gene37491:CDS |
| AGAATGAGATTGGTAAAGTT+TGG | 0.246664 | 3.4:+90631386 | MS.gene37491:CDS |
| GTACAGGTCTTATTTGCTTC+TGG | 0.257207 | 3.4:+90630116 | MS.gene37491:intron |
| GACATGGTGTATTGCTCTTC+TGG | 0.258029 | 3.4:+90633255 | MS.gene37491:CDS |
| TTCAGTATCATTAAGTTTCC+AGG | 0.285176 | 3.4:+90631556 | MS.gene37491:CDS |
| GAAGCTGTCGCTGCTGGTTT+TGG | 0.286863 | 3.4:+90625772 | MS.gene37491:CDS |
| CTTCATCTGTCTGCATGGTT+TGG | 0.298863 | 3.4:-90632024 | None:intergenic |
| TTTCCTTCTTATGGATTTCC+TGG | 0.302068 | 3.4:-90631574 | None:intergenic |
| AGACAATTACAACAACAATA+AGG | 0.304335 | 3.4:+90625570 | MS.gene37491:CDS |
| AGAGGTAGAGGAAGGGGAGG+AGG | 0.310111 | 3.4:+90633051 | MS.gene37491:CDS |
| ACAGAGATCTTTGCAGAATA+TGG | 0.326279 | 3.4:-90631995 | None:intergenic |
| TTAGGGAAGTTGACAAGGTT+GGG | 0.332272 | 3.4:-90625636 | None:intergenic |
| TCGGGGAAATCAAGGGAAAC+AGG | 0.333370 | 3.4:+90632616 | MS.gene37491:CDS |
| CAACAAACTGGTTCTGGTTC+TGG | 0.333487 | 3.4:+90625670 | MS.gene37491:CDS |
| TGGCTTGGTCCTTCCTGTAA+TGG | 0.336786 | 3.4:-90633083 | None:intergenic |
| TCCAGAGAAATGCTTCTTCA+TGG | 0.337644 | 3.4:-90633103 | None:intergenic |
| AGAGGGAGTGGCGGTGGCAG+GGG | 0.340036 | 3.4:+90632916 | MS.gene37491:CDS |
| AGAGGGAGAGGTAGAGGAAG+GGG | 0.352690 | 3.4:+90633045 | MS.gene37491:CDS |
| TCAAATACAAAAGTTTCTAA+TGG | 0.357068 | 3.4:+90632349 | MS.gene37491:CDS |
| GTTACCACCTCCTCCCTTGT+AGG | 0.357080 | 3.4:-90632866 | None:intergenic |
| TTCGTCAGGTAGGGTTCAAC+CGG | 0.357397 | 3.4:+90625708 | MS.gene37491:CDS |
| CTGTTCCAGAAACATGGAAT+TGG | 0.362186 | 3.4:-90632888 | None:intergenic |
| AAGAAATACCTCATCTCAAC+AGG | 0.364953 | 3.4:-90631017 | None:intergenic |
| CTGGAAGAGGGATGCTATCT+AGG | 0.368744 | 3.4:-90631451 | None:intergenic |
| GAATGAGATTGGTAAAGTTT+GGG | 0.371262 | 3.4:+90631387 | MS.gene37491:CDS |
| GGAGAGGGAGTGGCGGTGGC+AGG | 0.373843 | 3.4:+90632914 | MS.gene37491:CDS |
| TTGACTGGTAAAGTCTACTA+TGG | 0.375504 | 3.4:+90633323 | MS.gene37491:CDS |
| GGTCTAAGCGTAGCAGAATC+TGG | 0.375638 | 3.4:+90632550 | MS.gene37491:CDS |
| CTTTGAAGGAGACTATTAAC+AGG | 0.377429 | 3.4:+90631969 | MS.gene37491:CDS |
| AAACAACAACAAACTGGTTC+TGG | 0.379109 | 3.4:+90625664 | MS.gene37491:CDS |
| AGAGGGAGAGGGAGAGGTAG+AGG | 0.379505 | 3.4:+90633039 | MS.gene37491:CDS |
| TATTCCCTGATTACGGTAAA+GGG | 0.381006 | 3.4:+90632089 | MS.gene37491:CDS |
| CCCGCTAACAGCAGTGGACT+TGG | 0.382935 | 3.4:-90632242 | None:intergenic |
| GAAGATGTTAAGAATGAGAT+TGG | 0.384834 | 3.4:+90631376 | MS.gene37491:CDS |
| GAAGGGAGAGGGAGTGGCGG+TGG | 0.388652 | 3.4:+90632910 | MS.gene37491:CDS |
| GACAATTACAACAACAATAA+GGG | 0.388889 | 3.4:+90625571 | MS.gene37491:CDS |
| AGATGCTGAGCTTCCTTGCC+AGG | 0.390370 | 3.4:+90631258 | MS.gene37491:CDS |
| GGGAGAGGTAGAGGAAGGGG+AGG | 0.392878 | 3.4:+90633048 | MS.gene37491:CDS |
| GGGGCTAGAGGGATTGTTGC+TGG | 0.398706 | 3.4:+90626405 | MS.gene37491:CDS |
| ACGATGCAGTTCATCATTAG+AGG | 0.402493 | 3.4:+90629070 | MS.gene37491:CDS |
| AAACGCCTCTAATACAAAAT+GGG | 0.406638 | 3.4:+90632657 | MS.gene37491:CDS |
| TCATTATTGTCCAAAATACT+TGG | 0.412008 | 3.4:-90632457 | None:intergenic |
| GAGGTAGAAACAACCATTAC+AGG | 0.412585 | 3.4:+90633070 | MS.gene37491:CDS |
| AGAATATCTGCTCTGATGAC+TGG | 0.413031 | 3.4:-90631509 | None:intergenic |
| AGGGACCTATTCCCTGATTA+CGG | 0.415459 | 3.4:+90632082 | MS.gene37491:CDS |
| TCTGTCTGCATGGTTTGGTT+CGG | 0.416658 | 3.4:-90632019 | None:intergenic |
| CAAGATGAAGCTGTCGCTGC+TGG | 0.420506 | 3.4:+90625766 | MS.gene37491:CDS |
| CAAATACAAAAGTTTCTAAT+GGG | 0.429323 | 3.4:+90632350 | MS.gene37491:CDS |
| GGCAGGGGAAAGAGAGAAGG+GGG | 0.431243 | 3.4:+90632931 | MS.gene37491:CDS |
| AGTCATCAGAGCAGATATTC+TGG | 0.434434 | 3.4:+90631511 | MS.gene37491:CDS |
| GGAAACATCTTTGTGGCAGC+TGG | 0.434595 | 3.4:-90631470 | None:intergenic |
| CTATTCCCTGATTACGGTAA+AGG | 0.437817 | 3.4:+90632088 | MS.gene37491:CDS |
| CTTTACCGTAATCAGGGAAT+AGG | 0.437909 | 3.4:-90632087 | None:intergenic |
| TTTCTCCTCCTTGGGAAGCA+TGG | 0.441829 | 3.4:+90633292 | MS.gene37491:CDS |
| CAACAACTTTCTGAGATTCA+AGG | 0.442201 | 3.4:-90625819 | None:intergenic |
| AGCAATAGCAATACTTCGTC+AGG | 0.449539 | 3.4:+90625694 | MS.gene37491:CDS |
| GCTAATTCCGTCCATGCAAA+AGG | 0.451122 | 3.4:+90631292 | MS.gene37491:CDS |
| CTTAGGGAAGTTGACAAGGT+TGG | 0.451960 | 3.4:-90625637 | None:intergenic |
| GGAGAGGGAGAGGTAGAGGA+AGG | 0.452918 | 3.4:+90633043 | MS.gene37491:CDS |
| AGAAATGCTTCTTCATGGCT+TGG | 0.453241 | 3.4:-90633098 | None:intergenic |
| ATCTTTGTGGCAGCTGGAAG+AGG | 0.454654 | 3.4:-90631464 | None:intergenic |
| TTGTCCAAAATACTTGGATC+AGG | 0.456872 | 3.4:-90632451 | None:intergenic |
| TCGAGCACCAGGATCTCTAT+TGG | 0.458199 | 3.4:-90626576 | None:intergenic |
| TGCAGAATTGACAAGATTGC+TGG | 0.460148 | 3.4:+90627999 | MS.gene37491:CDS |
| GCCATGAAGAAGCATTTCTC+TGG | 0.460962 | 3.4:+90633102 | MS.gene37491:CDS |
| AAATGATGCAATTGTGTCAA+TGG | 0.462048 | 3.4:+90630947 | MS.gene37491:CDS |
| AAAGAATTGATACATGGTCT+TGG | 0.465801 | 3.4:+90632796 | MS.gene37491:CDS |
| GCAGGGGAAAGAGAGAAGGG+GGG | 0.466831 | 3.4:+90632932 | MS.gene37491:CDS |
| GCTTTCTGCAATTTAGGAGC+AGG | 0.469684 | 3.4:+90626361 | MS.gene37491:CDS |
| AAGAAGGAAACATTTCTTCA+AGG | 0.470689 | 3.4:+90631587 | MS.gene37491:CDS |
| CAATATATCAAGCAGGATTG+AGG | 0.471607 | 3.4:+90631625 | MS.gene37491:CDS |
| GCCAAGTCCACTGCTGTTAG+CGG | 0.473751 | 3.4:+90632241 | MS.gene37491:CDS |
| AATATATCAAGCAGGATTGA+GGG | 0.474349 | 3.4:+90631626 | MS.gene37491:CDS |
| TTGATACATGGTCTTGGACG+TGG | 0.478904 | 3.4:+90632802 | MS.gene37491:CDS |
| GAGAGGGAGTGGCGGTGGCA+GGG | 0.479141 | 3.4:+90632915 | MS.gene37491:CDS |
| ATTGAGGGATTACAGCATAA+TGG | 0.481131 | 3.4:+90631641 | MS.gene37491:CDS |
| CATTTCTTCAAGGTGTTGAA+AGG | 0.482501 | 3.4:+90631597 | MS.gene37491:CDS |
| TTCCCTCACCGTGGGGCTAG+AGG | 0.483084 | 3.4:+90626393 | MS.gene37491:CDS |
| AATTACAGCTACAAAGTGTC+TGG | 0.483452 | 3.4:+90632721 | MS.gene37491:CDS |
| TTTCCAAGTGGAGCAGATGA+TGG | 0.483469 | 3.4:-90632400 | None:intergenic |
| CTAATACAAAATGGGGCTCT+AGG | 0.483722 | 3.4:+90632665 | MS.gene37491:CDS |
| GATGTTAGCGGGAAAGATAA+AGG | 0.485143 | 3.4:+90632292 | MS.gene37491:CDS |
| TCATAATGATCTGAAGTGCT+TGG | 0.485164 | 3.4:+90632186 | MS.gene37491:CDS |
| CTAATTCCGTCCATGCAAAA+GGG | 0.486927 | 3.4:+90631293 | MS.gene37491:CDS |
| GTGGCAGGGGAAAGAGAGAA+GGG | 0.488538 | 3.4:+90632929 | MS.gene37491:CDS |
| ATGCTTTGCATGCTCAGCCT+TGG | 0.488541 | 3.4:+90628985 | MS.gene37491:CDS |
| CAGAAAATGTCGAATCGTTA+CGG | 0.489738 | 3.4:+90625535 | None:intergenic |
| GCATCAATGACCCTTCTGTC+AGG | 0.490097 | 3.4:-90632378 | None:intergenic |
| ATGTCGAATCGTTACGGTCA+AGG | 0.491585 | 3.4:+90625541 | MS.gene37491:CDS |
| GGAACAGAAGGGAGAGGGAG+TGG | 0.492302 | 3.4:+90632904 | MS.gene37491:CDS |
| GAATGACCTCTTCTGGATTG+TGG | 0.492612 | 3.4:-90632141 | None:intergenic |
| GAGAGGGAGAGGTAGAGGAA+GGG | 0.495109 | 3.4:+90633044 | MS.gene37491:CDS |
| AGCGGGAAAGATAAAGGAAA+AGG | 0.496032 | 3.4:+90632298 | MS.gene37491:CDS |
| AATAACAGAGGGAGAGGGAG+AGG | 0.496230 | 3.4:+90633033 | MS.gene37491:CDS |
| TCCCTCACCGTGGGGCTAGA+GGG | 0.496525 | 3.4:+90626394 | MS.gene37491:CDS |
| GCACATATATCAAACAACTT+TGG | 0.497604 | 3.4:-90627958 | None:intergenic |
| ATGCCATCATCTGCTCCACT+TGG | 0.499405 | 3.4:+90632397 | MS.gene37491:CDS |
| GCTGTTAGCGGGAAAGATAA+AGG | 0.500884 | 3.4:+90632253 | MS.gene37491:CDS |
| AGCATCTTCATCTGTCTGCA+TGG | 0.503904 | 3.4:-90632029 | None:intergenic |
| TAACTTTAGATATGGGAATG+AGG | 0.504342 | 3.4:+90631235 | MS.gene37491:intron |
| TGGCAGGGGAAAGAGAGAAG+GGG | 0.504607 | 3.4:+90632930 | MS.gene37491:CDS |
| GTGTACTAATTGATGTTAGC+GGG | 0.504771 | 3.4:+90632281 | MS.gene37491:CDS |
| TTCCATGTTTCTGGAACAGA+AGG | 0.505044 | 3.4:+90632892 | MS.gene37491:CDS |
| GTCAGGTAGGGTTCAACCGG+GGG | 0.505227 | 3.4:+90625711 | MS.gene37491:CDS |
| AGGTCTTCCAATAGAGATCC+TGG | 0.508009 | 3.4:+90626569 | MS.gene37491:intron |
| GATGACTGGGTCTTCAACAT+TGG | 0.511843 | 3.4:-90631495 | None:intergenic |
| GAATATCTGCTCTGATGACT+GGG | 0.512641 | 3.4:-90631508 | None:intergenic |
| TATTGAACATAATCAACATC+AGG | 0.514043 | 3.4:+90632960 | MS.gene37491:CDS |
| ACTGGGTCTTCAACATTGGC+AGG | 0.519457 | 3.4:-90631491 | None:intergenic |
| TCTTGGCGCGGTACAGAAGT+TGG | 0.521142 | 3.4:+90632837 | MS.gene37491:CDS |
| GAAACAGGGACCGGAAACTC+TGG | 0.522351 | 3.4:+90632631 | MS.gene37491:CDS |
| TCCCTTCTGTTCCAGAAACA+TGG | 0.523000 | 3.4:-90632894 | None:intergenic |
| TTCTCTTAGGGAAGTTGACA+AGG | 0.525769 | 3.4:-90625641 | None:intergenic |
| GGTGGCAGGGGAAAGAGAGA+AGG | 0.525868 | 3.4:+90632928 | MS.gene37491:CDS |
| TTTCCAGGAAATCCATAAGA+AGG | 0.527622 | 3.4:+90631571 | MS.gene37491:CDS |
| AAATCAAGGGAAACAGGGAC+CGG | 0.528322 | 3.4:+90632622 | MS.gene37491:CDS |
| GGTCCAAATAACAGAGGGAG+AGG | 0.528474 | 3.4:+90633027 | MS.gene37491:CDS |
| CCAAGTCCACTGCTGTTAGC+GGG | 0.528738 | 3.4:+90632242 | MS.gene37491:CDS |
| AACAACTTAAATATATATCT+GGG | 0.529820 | 3.4:+90631936 | MS.gene37491:CDS |
| GTATCAGCTGGTCGAGCACC+AGG | 0.532811 | 3.4:-90626587 | None:intergenic |
| GGAATTTCAATATATCAAGC+AGG | 0.534239 | 3.4:+90631618 | MS.gene37491:CDS |
| GATTCCTACAAGGGAGGAGG+TGG | 0.536721 | 3.4:+90632862 | MS.gene37491:CDS |
| AGCATGGCTCATACATTGAC+TGG | 0.536740 | 3.4:+90633308 | MS.gene37491:CDS |
| TCCCTCTAGCCCCACGGTGA+GGG | 0.540839 | 3.4:-90626395 | None:intergenic |
| ATTGGCAGGAAACATCTTTG+TGG | 0.542013 | 3.4:-90631477 | None:intergenic |
| GAAGTGGAGGGTAGAGATCA+AGG | 0.542597 | 3.4:+90633006 | MS.gene37491:CDS |
| CCACAGTACTATGTCAAAGA+TGG | 0.543656 | 3.4:+90632694 | MS.gene37491:CDS |
| GGTATGATTTCCCTCACCGT+GGG | 0.544651 | 3.4:+90626385 | MS.gene37491:CDS |
| AAGCATTTCTCTGGATTGAG+TGG | 0.544793 | 3.4:+90633111 | MS.gene37491:CDS |
| ATCTTTCCCGCTAACAGCAG+TGG | 0.545828 | 3.4:-90632248 | None:intergenic |
| AGCGGGAAAGATAAAGGAAA+AGG | 0.546036 | 3.4:+90632259 | MS.gene37491:CDS |
| TGATACATGGTCTTGGACGT+GGG | 0.546273 | 3.4:+90632803 | MS.gene37491:CDS |
| GCAGCGACAGCTTCATCTTG+CGG | 0.550531 | 3.4:-90625763 | None:intergenic |
| CGGGGAAATCAAGGGAAACA+GGG | 0.551304 | 3.4:+90632617 | MS.gene37491:CDS |
| GCGAATCATGCAACCTGGCA+AGG | 0.551653 | 3.4:-90631271 | None:intergenic |
| TTCTGCAATTTAGGAGCAGG+TGG | 0.552113 | 3.4:+90626364 | MS.gene37491:CDS |
| TGGCGCAGAAGATGGTGGAT+TGG | 0.552284 | 3.4:+90625792 | MS.gene37491:CDS |
| TAGGGAAGTTGACAAGGTTG+GGG | 0.554340 | 3.4:-90625635 | None:intergenic |
| AACAACTTTCTGAGATTCAA+GGG | 0.557535 | 3.4:-90625818 | None:intergenic |
| CGTCAGGTAGGGTTCAACCG+GGG | 0.558173 | 3.4:+90625710 | MS.gene37491:CDS |
| TCTCTTCCCCTGTTGAGATG+AGG | 0.560513 | 3.4:+90631009 | MS.gene37491:CDS |
| TCGTCAGGTAGGGTTCAACC+GGG | 0.564089 | 3.4:+90625709 | MS.gene37491:CDS |
| TAGCAATACTTCGTCAGGTA+GGG | 0.573778 | 3.4:+90625699 | MS.gene37491:CDS |
| CTCCACTTGGAAAATTTGTG+AGG | 0.575856 | 3.4:+90632410 | MS.gene37491:CDS |
| GCTGTTGAGAAACTCATGTA+GGG | 0.577070 | 3.4:-90626340 | None:intergenic |
| ATAGCAATACTTCGTCAGGT+AGG | 0.577589 | 3.4:+90625698 | MS.gene37491:CDS |
| AAAACCCTTTACCGTAATCA+GGG | 0.581322 | 3.4:-90632093 | None:intergenic |
| TCTGTACCGCGCCAAGAGGA+AGG | 0.584919 | 3.4:-90632831 | None:intergenic |
| TCTTTGTGGCAGCTGGAAGA+GGG | 0.585342 | 3.4:-90631463 | None:intergenic |
| ATCAAGGTCCAAATAACAGA+GGG | 0.586072 | 3.4:+90633022 | MS.gene37491:CDS |
| CTTGGATACTTCATTAGAGA+CGG | 0.588179 | 3.4:+90632204 | MS.gene37491:CDS |
| GGTGTACTAATTGATGTTAG+CGG | 0.589017 | 3.4:+90632280 | MS.gene37491:CDS |
| ATCTGATGATGTTTCTGAAG+TGG | 0.590047 | 3.4:+90632990 | MS.gene37491:CDS |
| ACAGAAGGGAGAGGGAGTGG+CGG | 0.592048 | 3.4:+90632907 | MS.gene37491:CDS |
| ATCCCTCTAGCCCCACGGTG+AGG | 0.593165 | 3.4:-90626396 | None:intergenic |
| TTTGAACTGAGTGTATCAGC+TGG | 0.593405 | 3.4:-90626599 | None:intergenic |
| AACAGAACACATGAAAGTCT+CGG | 0.595548 | 3.4:-90633352 | None:intergenic |
| CGAATCGTTACGGTCAAGGT+AGG | 0.597450 | 3.4:+90625545 | MS.gene37491:CDS |
| AACTTCTGTACCGCGCCAAG+AGG | 0.599243 | 3.4:-90632835 | None:intergenic |
| GCAGATTCCTACAAGGGAGG+AGG | 0.599612 | 3.4:+90632859 | MS.gene37491:CDS |
| TGAGGAAATCTAGAGCCGAC+AGG | 0.601210 | 3.4:+90632428 | MS.gene37491:CDS |
| ATGGGAAGAACCTGACAGAA+GGG | 0.601920 | 3.4:+90632368 | MS.gene37491:CDS |
| TGAGATTGGTAAAGTTTGGG+TGG | 0.606500 | 3.4:+90631390 | MS.gene37491:CDS |
| CTCAGTTCAAAAGATCATGA+AGG | 0.609132 | 3.4:+90626611 | MS.gene37491:CDS |
| GTTTCTGGAACAGAAGGGAG+AGG | 0.609356 | 3.4:+90632898 | MS.gene37491:CDS |
| CCCAAGGAGGAGAAAACTGT+CGG | 0.609438 | 3.4:-90633284 | None:intergenic |
| AATGGGAAGAACCTGACAGA+AGG | 0.610316 | 3.4:+90632367 | MS.gene37491:CDS |
| AGCTGTTGAGAAACTCATGT+AGG | 0.610389 | 3.4:-90626341 | None:intergenic |
| GATACATGGTCTTGGACGTG+GGG | 0.612696 | 3.4:+90632804 | MS.gene37491:CDS |
| CATCGTCACTTAAATAGCAA+AGG | 0.615864 | 3.4:-90631424 | None:intergenic |
| TGACACAGTCTCTAATATTG+TGG | 0.622918 | 3.4:+90631346 | MS.gene37491:CDS |
| GGGCAACCTTCCTCTTGGCG+CGG | 0.625389 | 3.4:+90632825 | MS.gene37491:CDS |
| GAAGTTGGCAGATTCCTACA+AGG | 0.625676 | 3.4:+90632852 | MS.gene37491:CDS |
| TGTATGAGCCATGCTTCCCA+AGG | 0.626489 | 3.4:-90633300 | None:intergenic |
| CAACAATCCCTCTAGCCCCA+CGG | 0.627910 | 3.4:-90626401 | None:intergenic |
| TTCAGGGTGGATATTCGTTG+AGG | 0.631460 | 3.4:+90631910 | MS.gene37491:intron |
| TTTCTGGAACAGAAGGGAGA+GGG | 0.633064 | 3.4:+90632899 | MS.gene37491:CDS |
| TTAGGAACGAATTTCATCTG+TGG | 0.633485 | 3.4:-90625604 | None:intergenic |
| AATACTTGGATCAGGCCTGT+CGG | 0.634432 | 3.4:-90632443 | None:intergenic |
| GTGGACTTGGCTTGTAACTG+TGG | 0.636167 | 3.4:-90632229 | None:intergenic |
| AATTAGCGAATCATGCAACC+TGG | 0.636551 | 3.4:-90631276 | None:intergenic |
| GTCCAAATAACAGAGGGAGA+GGG | 0.637429 | 3.4:+90633028 | MS.gene37491:CDS |
| GCTAAATTATCATGTAACCA+AGG | 0.640792 | 3.4:-90629002 | None:intergenic |
| TGGTATGATTTCCCTCACCG+TGG | 0.642009 | 3.4:+90626384 | MS.gene37491:CDS |
| TGATGATGTTTCTGAAGTGG+AGG | 0.644476 | 3.4:+90632993 | MS.gene37491:CDS |
| GCTCAGAAAGAATTGATACA+TGG | 0.645889 | 3.4:+90632790 | MS.gene37491:CDS |
| GATCAAGGTCCAAATAACAG+AGG | 0.648323 | 3.4:+90633021 | MS.gene37491:CDS |
| TCAGGTAGGGTTCAACCGGG+GGG | 0.651485 | 3.4:+90625712 | MS.gene37491:CDS |
| CTATGACCACAATCCAGAAG+AGG | 0.655302 | 3.4:+90632135 | MS.gene37491:CDS |
| AACGCCTCTAATACAAAATG+GGG | 0.658920 | 3.4:+90632658 | MS.gene37491:CDS |
| CCATCTTTGACATAGTACTG+TGG | 0.659242 | 3.4:-90632694 | None:intergenic |
| TAATTCCGTCCATGCAAAAG+GGG | 0.660109 | 3.4:+90631294 | MS.gene37491:CDS |
| TTTGAAGGAGACTATTAACA+GGG | 0.660401 | 3.4:+90631970 | MS.gene37491:CDS |
| ATGAGCCATGCTTCCCAAGG+AGG | 0.666773 | 3.4:-90633297 | None:intergenic |
| ATCAATCAGACGTATAGACA+TGG | 0.675680 | 3.4:+90633239 | MS.gene37491:CDS |
| GTATGATTTCCCTCACCGTG+GGG | 0.678147 | 3.4:+90626386 | MS.gene37491:CDS |
| AGAAATACCTCATCTCAACA+GGG | 0.678853 | 3.4:-90631016 | None:intergenic |
| TAGAAACAACCATTACAGGA+AGG | 0.681684 | 3.4:+90633074 | MS.gene37491:CDS |
| AAGTTGGCAGATTCCTACAA+GGG | 0.684550 | 3.4:+90632853 | MS.gene37491:CDS |
| TTGGCAGATTCCTACAAGGG+AGG | 0.685644 | 3.4:+90632856 | MS.gene37491:CDS |
| TATACTAATTGATTCTACGT+CGG | 0.693386 | 3.4:+90632321 | MS.gene37491:CDS |
| GATGATGTTTCTGAAGTGGA+GGG | 0.699043 | 3.4:+90632994 | MS.gene37491:CDS |
| GAAATACCTCATCTCAACAG+GGG | 0.699731 | 3.4:-90631015 | None:intergenic |
| ATACATGGTCTTGGACGTGG+GGG | 0.701593 | 3.4:+90632805 | MS.gene37491:CDS |
| TCCATGTTTCTGGAACAGAA+GGG | 0.702506 | 3.4:+90632893 | MS.gene37491:CDS |
| ACAATATCATGAAAACACGA+CGG | 0.757457 | 3.4:-90626455 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 90625541 | 90633397 | 90625541 | ID=MS.gene37491 |
| chr3.4 | mRNA | 90625541 | 90633397 | 90625541 | ID=MS.gene37491.t1;Parent=MS.gene37491 |
| chr3.4 | exon | 90625541 | 90625904 | 90625541 | ID=MS.gene37491.t1.exon1;Parent=MS.gene37491.t1 |
| chr3.4 | CDS | 90625541 | 90625904 | 90625541 | ID=cds.MS.gene37491.t1;Parent=MS.gene37491.t1 |
| chr3.4 | exon | 90626325 | 90626484 | 90626325 | ID=MS.gene37491.t1.exon2;Parent=MS.gene37491.t1 |
| chr3.4 | CDS | 90626325 | 90626484 | 90626325 | ID=cds.MS.gene37491.t1;Parent=MS.gene37491.t1 |
| chr3.4 | exon | 90626571 | 90626632 | 90626571 | ID=MS.gene37491.t1.exon3;Parent=MS.gene37491.t1 |
| chr3.4 | CDS | 90626571 | 90626632 | 90626571 | ID=cds.MS.gene37491.t1;Parent=MS.gene37491.t1 |
| chr3.4 | exon | 90627926 | 90628020 | 90627926 | ID=MS.gene37491.t1.exon4;Parent=MS.gene37491.t1 |
| chr3.4 | CDS | 90627926 | 90628020 | 90627926 | ID=cds.MS.gene37491.t1;Parent=MS.gene37491.t1 |
| chr3.4 | exon | 90628978 | 90629091 | 90628978 | ID=MS.gene37491.t1.exon5;Parent=MS.gene37491.t1 |
| chr3.4 | CDS | 90628978 | 90629091 | 90628978 | ID=cds.MS.gene37491.t1;Parent=MS.gene37491.t1 |
| chr3.4 | exon | 90630122 | 90630187 | 90630122 | ID=MS.gene37491.t1.exon6;Parent=MS.gene37491.t1 |
| chr3.4 | CDS | 90630122 | 90630187 | 90630122 | ID=cds.MS.gene37491.t1;Parent=MS.gene37491.t1 |
| chr3.4 | exon | 90630933 | 90631030 | 90630933 | ID=MS.gene37491.t1.exon7;Parent=MS.gene37491.t1 |
| chr3.4 | CDS | 90630933 | 90631030 | 90630933 | ID=cds.MS.gene37491.t1;Parent=MS.gene37491.t1 |
| chr3.4 | exon | 90631244 | 90631662 | 90631244 | ID=MS.gene37491.t1.exon8;Parent=MS.gene37491.t1 |
| chr3.4 | CDS | 90631244 | 90631662 | 90631244 | ID=cds.MS.gene37491.t1;Parent=MS.gene37491.t1 |
| chr3.4 | exon | 90631915 | 90633132 | 90631915 | ID=MS.gene37491.t1.exon9;Parent=MS.gene37491.t1 |
| chr3.4 | CDS | 90631915 | 90633132 | 90631915 | ID=cds.MS.gene37491.t1;Parent=MS.gene37491.t1 |
| chr3.4 | exon | 90633231 | 90633397 | 90633231 | ID=MS.gene37491.t1.exon10;Parent=MS.gene37491.t1 |
| chr3.4 | CDS | 90633231 | 90633397 | 90633231 | ID=cds.MS.gene37491.t1;Parent=MS.gene37491.t1 |
| Gene Sequence |
| Protein sequence |
