Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37835.t1 | XP_003617080.1 | 99.6 | 224 | 0 | 1 | 1 | 224 | 1 | 223 | 2.20E-108 | 401.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37835.t1 | G7K2X4 | 99.6 | 224 | 0 | 1 | 1 | 224 | 1 | 223 | 1.6e-108 | 401.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene37835 | 0.808236 | 3.42E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene37835 | 0.828628 | 8.09E-55 | -1.69E-46 |
| MS.gene050750 | MS.gene37835 | -0.800119 | 1.67E-48 | -1.69E-46 |
| MS.gene050953 | MS.gene37835 | -0.81494 | 1.19E-51 | -1.69E-46 |
| MS.gene051243 | MS.gene37835 | -0.806706 | 7.22E-50 | -1.69E-46 |
| MS.gene051452 | MS.gene37835 | -0.818148 | 2.28E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene37835 | -0.807788 | 4.26E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene37835 | 0.825206 | 5.32E-54 | -1.69E-46 |
| MS.gene052426 | MS.gene37835 | -0.809196 | 2.13E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene37835 | -0.800518 | 1.39E-48 | -1.69E-46 |
| MS.gene05415 | MS.gene37835 | -0.801765 | 7.71E-49 | -1.69E-46 |
| MS.gene054405 | MS.gene37835 | -0.802662 | 5.04E-49 | -1.69E-46 |
| MS.gene054657 | MS.gene37835 | -0.818283 | 2.13E-52 | -1.69E-46 |
| MS.gene05510 | MS.gene37835 | -0.832218 | 1.07E-55 | -1.69E-46 |
| MS.gene055222 | MS.gene37835 | -0.811688 | 6.18E-51 | -1.69E-46 |
| MS.gene055623 | MS.gene37835 | -0.802266 | 6.09E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene37835 | -0.841819 | 3.77E-58 | -1.69E-46 |
| MS.gene056506 | MS.gene37835 | -0.804094 | 2.55E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene37835 | -0.809413 | 1.92E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene37835 | -0.812302 | 4.54E-51 | -1.69E-46 |
| MS.gene058146 | MS.gene37835 | -0.822267 | 2.60E-53 | -1.69E-46 |
| MS.gene058223 | MS.gene37835 | 0.823205 | 1.57E-53 | -1.69E-46 |
| MS.gene058399 | MS.gene37835 | -0.802628 | 5.13E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene37835 | -0.807945 | 3.94E-50 | -1.69E-46 |
| MS.gene058595 | MS.gene37835 | -0.804108 | 2.53E-49 | -1.69E-46 |
| MS.gene059161 | MS.gene37835 | -0.805689 | 1.18E-49 | -1.69E-46 |
| MS.gene05979 | MS.gene37835 | -0.815489 | 9.01E-52 | -1.69E-46 |
| MS.gene059872 | MS.gene37835 | 0.820953 | 5.22E-53 | -1.69E-46 |
| MS.gene060634 | MS.gene37835 | 0.80741 | 5.12E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene37835 | -0.808775 | 2.62E-50 | -1.69E-46 |
| MS.gene060685 | MS.gene37835 | -0.806806 | 6.88E-50 | -1.69E-46 |
| MS.gene060802 | MS.gene37835 | -0.818156 | 2.27E-52 | -1.69E-46 |
| MS.gene060879 | MS.gene37835 | -0.801408 | 9.13E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37835.t1 | MTR_5g087720 | 99.554 | 224 | 0 | 1 | 1 | 224 | 1 | 223 | 4.77e-158 | 436 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37835.t1 | AT5G21070 | 91.549 | 213 | 18 | 0 | 1 | 213 | 1 | 213 | 1.01e-140 | 393 |
Find 57 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATATTATATTGTTTCTTA+TGG | 0.181972 | 5.3:+70474991 | MS.gene37835:CDS |
| CAACCAACCCATGGAGAAAA+TGG | 0.257423 | 5.3:+70475039 | MS.gene37835:CDS |
| GATCATGATCATGAAACATT+AGG | 0.305094 | 5.3:-70476290 | None:intergenic |
| TTTCTTCATGCAGCTGCATT+TGG | 0.310371 | 5.3:+70474842 | MS.gene37835:intron |
| TATATTATATTGTTTCTTAT+GGG | 0.319210 | 5.3:+70474992 | MS.gene37835:CDS |
| CCAGTCAGCTGAAGTTTCAT+TGG | 0.343305 | 5.3:+70476208 | MS.gene37835:CDS |
| GCACGACCCACGATGGAAAA+AGG | 0.348877 | 5.3:-70473275 | None:intergenic |
| GGTTCAGTACTGTGTTTAGT+AGG | 0.390490 | 5.3:+70476258 | MS.gene37835:CDS |
| ATCATGATCATGAAACATTA+GGG | 0.391083 | 5.3:-70476289 | None:intergenic |
| ACAATGCAGGAACAAGAATA+AGG | 0.393351 | 5.3:-70475072 | None:intergenic |
| ACCATGGCTAACACCATTGC+TGG | 0.396531 | 5.3:+70474914 | MS.gene37835:CDS |
| TCGTGGGTCGTGCTCAGAAA+TGG | 0.405397 | 5.3:+70473285 | MS.gene37835:CDS |
| CATACTAACAAAGAGGGTTC+TGG | 0.421643 | 5.3:-70473315 | None:intergenic |
| TCCTTGTGCTACAACACTTC+CGG | 0.425642 | 5.3:+70475096 | MS.gene37835:CDS |
| CCATCATCGTGCTGCTACTC+AGG | 0.429667 | 5.3:+70475161 | MS.gene37835:CDS |
| CAGTCAGCTGAAGTTTCATT+GGG | 0.429778 | 5.3:+70476209 | MS.gene37835:CDS |
| TCCGATTGTGGACAGATCTT+CGG | 0.435752 | 5.3:-70473201 | None:intergenic |
| GTTGGTTGTGCGAATGACTA+TGG | 0.440768 | 5.3:-70475024 | None:intergenic |
| ATATTGTTTCTTATGGGAAA+AGG | 0.442916 | 5.3:+70474998 | MS.gene37835:CDS |
| AACAAAGAGGGTTCTGGAAA+GGG | 0.446512 | 5.3:-70473309 | None:intergenic |
| CTTCCGGTATTTCTTGCTGT+TGG | 0.456150 | 5.3:+70475112 | MS.gene37835:CDS |
| CCAATGAAACTTCAGCTGAC+TGG | 0.468584 | 5.3:-70476208 | None:intergenic |
| GTAATATCCACTTCACTGCT+TGG | 0.470781 | 5.3:+70474878 | MS.gene37835:CDS |
| GATCATGATCATCATAATCA+TGG | 0.471396 | 5.3:+70476303 | MS.gene37835:CDS |
| CACCATTGCTGGTGAAGAAA+CGG | 0.471872 | 5.3:+70474925 | MS.gene37835:CDS |
| CGGTACGACAAACTTCTTGT+TGG | 0.472038 | 5.3:+70476237 | MS.gene37835:CDS |
| TCGGCGGTGAAACTATTCAT+TGG | 0.486985 | 5.3:-70473182 | None:intergenic |
| CACCGTTTCTTCACCAGCAA+TGG | 0.491505 | 5.3:-70474927 | None:intergenic |
| GCCGAAGATCTGTCCACAAT+CGG | 0.512818 | 5.3:+70473200 | MS.gene37835:CDS |
| CATGGAGAAGTAGCTTCTGT+TGG | 0.520447 | 5.3:+70476321 | MS.gene37835:CDS |
| TTTCCAACAGCAAGAAATAC+CGG | 0.522021 | 5.3:-70475115 | None:intergenic |
| AATTTCCGTGATGACTTCAC+TGG | 0.530371 | 5.3:+70476164 | MS.gene37835:CDS |
| TAACAAAGAGGGTTCTGGAA+AGG | 0.530818 | 5.3:-70473310 | None:intergenic |
| CCTGAGTAGCAGCACGATGA+TGG | 0.531732 | 5.3:-70475161 | None:intergenic |
| ATGGAGAAAATGGCTGTAGC+CGG | 0.543633 | 5.3:+70475049 | MS.gene37835:CDS |
| TGCAGGAACAAGAATAAGGC+CGG | 0.546884 | 5.3:-70475068 | None:intergenic |
| TGGAAATTCATCTTCCATGA+TGG | 0.557206 | 5.3:+70475132 | MS.gene37835:CDS |
| TTGTTTCTTATGGGAAAAGG+TGG | 0.564015 | 5.3:+70475001 | MS.gene37835:CDS |
| TCAGCTGAAGTTTCATTGGG+TGG | 0.570047 | 5.3:+70476212 | MS.gene37835:CDS |
| ATTCATTCATTCCCACACAC+TGG | 0.574555 | 5.3:+70473249 | MS.gene37835:CDS |
| GATGATGGCGAGCACCATCA+TGG | 0.575961 | 5.3:-70475146 | None:intergenic |
| AGTGGCGATTCCTCCGATTG+TGG | 0.577084 | 5.3:-70473213 | None:intergenic |
| ACCAGCAATGGTGTTAGCCA+TGG | 0.579988 | 5.3:-70474915 | None:intergenic |
| AGTGTGTGGGAATGAATGAA+TGG | 0.597694 | 5.3:-70473247 | None:intergenic |
| TGAAGTTTCATTGGGTGGAG+CGG | 0.604217 | 5.3:+70476217 | MS.gene37835:CDS |
| TGTTATACCAAGCAGTGAAG+TGG | 0.610049 | 5.3:-70474885 | None:intergenic |
| ATAATCACATACTAACAAAG+AGG | 0.611954 | 5.3:-70473322 | None:intergenic |
| TAATCACATACTAACAAAGA+GGG | 0.630081 | 5.3:-70473321 | None:intergenic |
| ACCGGAAGTGTTGTAGCACA+AGG | 0.633410 | 5.3:-70475097 | None:intergenic |
| TGCTACCAGTGAAGTCATCA+CGG | 0.642905 | 5.3:-70476169 | None:intergenic |
| GTAGCACAAGGAGACAATGC+AGG | 0.649814 | 5.3:-70475085 | None:intergenic |
| GAAGATCTGTCCACAATCGG+AGG | 0.656287 | 5.3:+70473203 | MS.gene37835:CDS |
| TCATTCGCACAACCAACCCA+TGG | 0.656854 | 5.3:+70475030 | MS.gene37835:CDS |
| TTTCTGAGCACGACCCACGA+TGG | 0.671416 | 5.3:-70473282 | None:intergenic |
| GATTGTGGACAGATCTTCGG+CGG | 0.685117 | 5.3:-70473198 | None:intergenic |
| TGGTATAACAGCAATTACCA+TGG | 0.692649 | 5.3:+70474898 | MS.gene37835:CDS |
| TGAATGGAGAATCGATACAG+TGG | 0.695980 | 5.3:-70473231 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTATATTGTTTCTTAT+GGG | + | chr5.3:70474992-70475011 | MS.gene37835:CDS | 10.0% |
| !! | ATTTATATAACAAAAGATAC+TGG | + | chr5.3:70473769-70473788 | MS.gene37835:intron | 15.0% |
| !! | GAATTTATTAAAAAAGCTTA+TGG | + | chr5.3:70473856-70473875 | MS.gene37835:intron | 15.0% |
| !! | TTTATATAACAAAAGATACT+GGG | + | chr5.3:70473770-70473789 | MS.gene37835:intron | 15.0% |
| !!! | AGTGTTATTTATTATAGTAT+AGG | + | chr5.3:70473471-70473490 | MS.gene37835:intron | 15.0% |
| !!! | GTATATTATATTGTTTCTTA+TGG | + | chr5.3:70474991-70475010 | MS.gene37835:CDS | 15.0% |
| !!! | TTTTAAACTCTTTGTTATAA+TGG | + | chr5.3:70473597-70473616 | MS.gene37835:intron | 15.0% |
| !! | AAAACTTGTACAAACTAATT+TGG | - | chr5.3:70476090-70476109 | None:intergenic | 20.0% |
| !! | AACAAGCAAAAATGAAAAAA+TGG | - | chr5.3:70473366-70473385 | None:intergenic | 20.0% |
| !! | AATTATGCAAAAATAGTAAG+AGG | - | chr5.3:70475663-70475682 | None:intergenic | 20.0% |
| !! | ACAAGTAATTTACATTAAAC+AGG | + | chr5.3:70475485-70475504 | MS.gene37835:intron | 20.0% |
| !! | ATAAGCATTTATATGATAAG+CGG | + | chr5.3:70476038-70476057 | MS.gene37835:intron | 20.0% |
| !! | ATTTATTTGAGCTTATTTGT+TGG | + | chr5.3:70475840-70475859 | MS.gene37835:intron | 20.0% |
| !! | TCAAATAAATCAATCAAAAC+AGG | - | chr5.3:70475830-70475849 | None:intergenic | 20.0% |
| !! | TGTTCTATTAGTAAAATGAA+CGG | - | chr5.3:70474756-70474775 | None:intergenic | 20.0% |
| !!! | ATTTTTTCATTTTTGCTTGT+TGG | + | chr5.3:70473365-70473384 | MS.gene37835:intron | 20.0% |
| !!! | GAAAGCAATTTAACTTATTT+CGG | - | chr5.3:70474083-70474102 | None:intergenic | 20.0% |
| !!! | TGGTTATCAAGATTATATTT+TGG | + | chr5.3:70475280-70475299 | MS.gene37835:intron | 20.0% |
| !!! | TTTTTTCATTTTTGCTTGTT+GGG | + | chr5.3:70473366-70473385 | MS.gene37835:intron | 20.0% |
| ! | AGTAGTATAAGAAAATAAGC+TGG | - | chr5.3:70473900-70473919 | None:intergenic | 25.0% |
| ! | AGTTTATGTGCATTAGATTT+GGG | + | chr5.3:70473693-70473712 | MS.gene37835:intron | 25.0% |
| ! | ATAATCACATACTAACAAAG+AGG | - | chr5.3:70473325-70473344 | None:intergenic | 25.0% |
| ! | ATCATGATCATGAAACATTA+GGG | - | chr5.3:70476292-70476311 | None:intergenic | 25.0% |
| ! | CGTGTAAACAAAAAATTACA+CGG | - | chr5.3:70473517-70473536 | None:intergenic | 25.0% |
| ! | GATAAACTCAAATAAGTCAA+TGG | + | chr5.3:70474352-70474371 | MS.gene37835:intron | 25.0% |
| ! | GTTAATATCTGTTCAAAACT+AGG | - | chr5.3:70475623-70475642 | None:intergenic | 25.0% |
| ! | GTTGTACAAACAATACATAA+AGG | - | chr5.3:70474415-70474434 | None:intergenic | 25.0% |
| ! | TAATCACATACTAACAAAGA+GGG | - | chr5.3:70473324-70473343 | None:intergenic | 25.0% |
| ! | TAGTTTATGTGCATTAGATT+TGG | + | chr5.3:70473692-70473711 | MS.gene37835:intron | 25.0% |
| ! | TATGGAAAATCATGTCTATT+TGG | + | chr5.3:70474558-70474577 | MS.gene37835:intron | 25.0% |
| ! | TTGAACAAGTTGTGTTAAAA+TGG | + | chr5.3:70473447-70473466 | MS.gene37835:intron | 25.0% |
| ! | TTGTGGGTCTTAAATAATTA+CGG | + | chr5.3:70473640-70473659 | MS.gene37835:intron | 25.0% |
| !! | AGTTTGTACAAGTTTTTGTT+TGG | + | chr5.3:70476094-70476113 | MS.gene37835:intron | 25.0% |
| !! | ATATTGTTTCTTATGGGAAA+AGG | + | chr5.3:70474998-70475017 | MS.gene37835:CDS | 25.0% |
| !!! | AATATTGAAGCTTTAGTTTG+TGG | + | chr5.3:70473623-70473642 | MS.gene37835:intron | 25.0% |
| !!! | AGTTGCAAATGTTATTTTAG+AGG | - | chr5.3:70474637-70474656 | None:intergenic | 25.0% |
| !!! | ATATTGAAGCTTTAGTTTGT+GGG | + | chr5.3:70473624-70473643 | MS.gene37835:intron | 25.0% |
| !!! | GTTTGTACAAGTTTTTGTTT+GGG | + | chr5.3:70476095-70476114 | MS.gene37835:intron | 25.0% |
| !!! | TTTGTACAAGTTTTTGTTTG+GGG | + | chr5.3:70476096-70476115 | MS.gene37835:intron | 25.0% |
| AAATAATTACGGATGTGAGA+TGG | + | chr5.3:70473651-70473670 | MS.gene37835:intron | 30.0% | |
| AATAAGCTGAGAACATCTTA+TGG | + | chr5.3:70474217-70474236 | MS.gene37835:intron | 30.0% | |
| AATATTCCTAAAATCCTCTC+AGG | + | chr5.3:70475510-70475529 | MS.gene37835:intron | 30.0% | |
| ACAAAGTTAAAAACGAACTG+TGG | - | chr5.3:70474818-70474837 | None:intergenic | 30.0% | |
| CAAAGTTAAAAACGAACTGT+GGG | - | chr5.3:70474817-70474836 | None:intergenic | 30.0% | |
| CAGTTACATATGAATTGAAC+TGG | + | chr5.3:70474726-70474745 | MS.gene37835:intron | 30.0% | |
| CTATTAGTAAAATGAACGGT+GGG | - | chr5.3:70474752-70474771 | None:intergenic | 30.0% | |
| GATCATGATCATCATAATCA+TGG | + | chr5.3:70476303-70476322 | MS.gene37835:CDS | 30.0% | |
| GATCATGATCATGAAACATT+AGG | - | chr5.3:70476293-70476312 | None:intergenic | 30.0% | |
| GTCAATAGAAAAGCTCAAAT+AGG | - | chr5.3:70473810-70473829 | None:intergenic | 30.0% | |
| TCTATTAGTAAAATGAACGG+TGG | - | chr5.3:70474753-70474772 | None:intergenic | 30.0% | |
| TGACAGTTACTAGCTAAAAA+TGG | + | chr5.3:70474505-70474524 | MS.gene37835:intron | 30.0% | |
| TTAGGTTCAAACATACGTTA+AGG | - | chr5.3:70474599-70474618 | None:intergenic | 30.0% | |
| TTCTATATGTTCTCCAAGAT+AGG | + | chr5.3:70475940-70475959 | MS.gene37835:intron | 30.0% | |
| TTCTGAATAAGATACAGCTA+TGG | + | chr5.3:70474540-70474559 | MS.gene37835:intron | 30.0% | |
| ! | ACTGTTTTCATAAGCTATCT+TGG | - | chr5.3:70473925-70473944 | None:intergenic | 30.0% |
| ! | ACTGTTTTCTTAACCTATCT+TGG | - | chr5.3:70475956-70475975 | None:intergenic | 30.0% |
| ! | ATAATCTTGATAACCAAGAC+AGG | - | chr5.3:70475276-70475295 | None:intergenic | 30.0% |
| ! | GTTAATTTTATTAGCTACCC+TGG | + | chr5.3:70474182-70474201 | MS.gene37835:intron | 30.0% |
| !! | TGTTGGGTTATTTGTTTTCA+TGG | + | chr5.3:70473382-70473401 | MS.gene37835:intron | 30.0% |
| !!! | TGGTAGCATTGTCATTTTAT+GGG | + | chr5.3:70476184-70476203 | MS.gene37835:CDS | 30.0% |
| !!! | TTATTTTTGCTGCTGCTTTT+TGG | + | chr5.3:70475192-70475211 | MS.gene37835:intron | 30.0% |
| ACAATGCAGGAACAAGAATA+AGG | - | chr5.3:70475075-70475094 | None:intergenic | 35.0% | |
| AGAGCATAAGAAGGAATTTC+AGG | - | chr5.3:70475782-70475801 | None:intergenic | 35.0% | |
| AGGAACTGTACAGATACTTT+AGG | - | chr5.3:70474617-70474636 | None:intergenic | 35.0% | |
| ATAAGCTGAAAACAGCTCAT+TGG | - | chr5.3:70475920-70475939 | None:intergenic | 35.0% | |
| ATTGCATATTCATGTCCTGA+TGG | - | chr5.3:70475427-70475446 | None:intergenic | 35.0% | |
| CATGTCTATTTGGATTTCTG+TGG | + | chr5.3:70474568-70474587 | MS.gene37835:intron | 35.0% | |
| GTTCAATCTGCTTATTCAAC+TGG | - | chr5.3:70475601-70475620 | None:intergenic | 35.0% | |
| TAAATCAAAGAACATGCGAG+TGG | - | chr5.3:70475572-70475591 | None:intergenic | 35.0% | |
| TAACTTATTTCGGCTCTGTT+TGG | - | chr5.3:70474073-70474092 | None:intergenic | 35.0% | |
| TCAAATGCAAGACAGAAATC+AGG | - | chr5.3:70475720-70475739 | None:intergenic | 35.0% | |
| TGACGTGAGACATTTCTAAA+GGG | - | chr5.3:70475383-70475402 | None:intergenic | 35.0% | |
| TGGAAATTCATCTTCCATGA+TGG | + | chr5.3:70475132-70475151 | MS.gene37835:CDS | 35.0% | |
| TGGTATAACAGCAATTACCA+TGG | + | chr5.3:70474898-70474917 | MS.gene37835:CDS | 35.0% | |
| TTTCCAACAGCAAGAAATAC+CGG | - | chr5.3:70475118-70475137 | None:intergenic | 35.0% | |
| ! | TCATTTCCTGAGAGGATTTT+AGG | - | chr5.3:70475519-70475538 | None:intergenic | 35.0% |
| ! | TTGTTTCTTATGGGAAAAGG+TGG | + | chr5.3:70475001-70475020 | MS.gene37835:CDS | 35.0% |
| !! | TCACTTTTGCTCGTATTTCT+CGG | + | chr5.3:70474962-70474981 | MS.gene37835:CDS | 35.0% |
| !!! | CTGGTAGCATTGTCATTTTA+TGG | + | chr5.3:70476183-70476202 | MS.gene37835:CDS | 35.0% |
| !!! | GGTAGCATTGTCATTTTATG+GGG | + | chr5.3:70476185-70476204 | MS.gene37835:CDS | 35.0% |
| !!! | TATATTTTGGAACACTGCGT+CGG | + | chr5.3:70475293-70475312 | MS.gene37835:intron | 35.0% |
| !!! | TGATGCTAGTTTGGTTTTAG+AGG | + | chr5.3:70475804-70475823 | MS.gene37835:intron | 35.0% |
| !!! | TTTTGGTGCTTCTTTTTCGA+AGG | + | chr5.3:70475209-70475228 | MS.gene37835:intron | 35.0% |
| !!! | TTTTTTGCTCATTTCCTGAG+AGG | - | chr5.3:70475527-70475546 | None:intergenic | 35.0% |
| AAGCACTTGTGAGACTGTTT+GGG | + | chr5.3:70475866-70475885 | MS.gene37835:intron | 40.0% | |
| AATTTCCGTGATGACTTCAC+TGG | + | chr5.3:70476164-70476183 | MS.gene37835:CDS | 40.0% | |
| ACTGTTTGAGAGAGAGCTTA+TGG | - | chr5.3:70474306-70474325 | None:intergenic | 40.0% | |
| AGACTGTTTGGGAGAACTTA+TGG | + | chr5.3:70475877-70475896 | MS.gene37835:intron | 40.0% | |
| AGCATCAACAGAGCATAAGA+AGG | - | chr5.3:70475791-70475810 | None:intergenic | 40.0% | |
| AGTGTGTGGGAATGAATGAA+TGG | - | chr5.3:70473250-70473269 | None:intergenic | 40.0% | |
| ATGCTCTGTTGATGCTAGTT+TGG | + | chr5.3:70475795-70475814 | MS.gene37835:intron | 40.0% | |
| ATTCATTCATTCCCACACAC+TGG | + | chr5.3:70473249-70473268 | MS.gene37835:CDS | 40.0% | |
| CAGTCAGCTGAAGTTTCATT+GGG | + | chr5.3:70476209-70476228 | MS.gene37835:CDS | 40.0% | |
| CATACTAACAAAGAGGGTTC+TGG | - | chr5.3:70473318-70473337 | None:intergenic | 40.0% | |
| CATCCATGTTTCCTTTGAAC+TGG | + | chr5.3:70474791-70474810 | MS.gene37835:intron | 40.0% | |
| CTGACGTGAGACATTTCTAA+AGG | - | chr5.3:70475384-70475403 | None:intergenic | 40.0% | |
| GAATGGACATTCTGAATCGT+TGG | + | chr5.3:70475326-70475345 | MS.gene37835:intron | 40.0% | |
| GGTTCAGTACTGTGTTTAGT+AGG | + | chr5.3:70476258-70476277 | MS.gene37835:CDS | 40.0% | |
| GTAATATCCACTTCACTGCT+TGG | + | chr5.3:70474878-70474897 | MS.gene37835:CDS | 40.0% | |
| TAAGCACTTGTGAGACTGTT+TGG | + | chr5.3:70475865-70475884 | MS.gene37835:intron | 40.0% | |
| TGAAATGTGACTTGACCATC+AGG | + | chr5.3:70475409-70475428 | MS.gene37835:intron | 40.0% | |
| TGAATGGAGAATCGATACAG+TGG | - | chr5.3:70473234-70473253 | None:intergenic | 40.0% | |
| TGTGCATTAGATTTGGGTGT+AGG | + | chr5.3:70473699-70473718 | MS.gene37835:intron | 40.0% | |
| TGTTATACCAAGCAGTGAAG+TGG | - | chr5.3:70474888-70474907 | None:intergenic | 40.0% | |
| TTATTTCCTCAAGCTCTCCA+GGG | - | chr5.3:70474202-70474221 | None:intergenic | 40.0% | |
| TTTCTTCATGCAGCTGCATT+TGG | + | chr5.3:70474842-70474861 | MS.gene37835:intron | 40.0% | |
| ! | CTTTAGAAATGTCTCACGTC+AGG | + | chr5.3:70475382-70475401 | MS.gene37835:intron | 40.0% |
| !! | AACAAAGAGGGTTCTGGAAA+GGG | - | chr5.3:70473312-70473331 | None:intergenic | 40.0% |
| !! | TAACAAAGAGGGTTCTGGAA+AGG | - | chr5.3:70473313-70473332 | None:intergenic | 40.0% |
| AATGCAGTGGTTTCCTGTCT+TGG | + | chr5.3:70475260-70475279 | MS.gene37835:intron | 45.0% | |
| ATGGAGAAAATGGCTGTAGC+CGG | + | chr5.3:70475049-70475068 | MS.gene37835:CDS | 45.0% | |
| CAACCAACCCATGGAGAAAA+TGG | + | chr5.3:70475039-70475058 | MS.gene37835:CDS | 45.0% | |
| CACCATTGCTGGTGAAGAAA+CGG | + | chr5.3:70474925-70474944 | MS.gene37835:CDS | 45.0% | |
| CATGGAGAAGTAGCTTCTGT+TGG | + | chr5.3:70476321-70476340 | MS.gene37835:CDS | 45.0% | |
| CCAATGAAACTTCAGCTGAC+TGG | - | chr5.3:70476211-70476230 | None:intergenic | 45.0% | |
| CCAGTCAGCTGAAGTTTCAT+TGG | + | chr5.3:70476208-70476227 | MS.gene37835:CDS | 45.0% | |
| CGGTACGACAAACTTCTTGT+TGG | + | chr5.3:70476237-70476256 | MS.gene37835:CDS | 45.0% | |
| CTCATTGGCATGTCATTAGC+TGG | - | chr5.3:70475905-70475924 | None:intergenic | 45.0% | |
| CTTATTTCCTCAAGCTCTCC+AGG | - | chr5.3:70474203-70474222 | None:intergenic | 45.0% | |
| GAAAAAGGAAGCCAGTGTGT+GGG | - | chr5.3:70473263-70473282 | None:intergenic | 45.0% | |
| GTTGGTTGTGCGAATGACTA+TGG | - | chr5.3:70475027-70475046 | None:intergenic | 45.0% | |
| TACGGATGTGAGATGGAAGA+GGG | + | chr5.3:70473658-70473677 | MS.gene37835:intron | 45.0% | |
| TCAGCTGAAGTTTCATTGGG+TGG | + | chr5.3:70476212-70476231 | MS.gene37835:CDS | 45.0% | |
| TCCGATTGTGGACAGATCTT+CGG | - | chr5.3:70473204-70473223 | None:intergenic | 45.0% | |
| TCCTTGTGCTACAACACTTC+CGG | + | chr5.3:70475096-70475115 | MS.gene37835:CDS | 45.0% | |
| TGAAGTTTCATTGGGTGGAG+CGG | + | chr5.3:70476217-70476236 | MS.gene37835:CDS | 45.0% | |
| TGCAGGAACAAGAATAAGGC+CGG | - | chr5.3:70475071-70475090 | None:intergenic | 45.0% | |
| TGCTACCAGTGAAGTCATCA+CGG | - | chr5.3:70476172-70476191 | None:intergenic | 45.0% | |
| TTACGGATGTGAGATGGAAG+AGG | + | chr5.3:70473657-70473676 | MS.gene37835:intron | 45.0% | |
| TTTGGCATCTAGCGCATGTT+TGG | - | chr5.3:70476072-70476091 | None:intergenic | 45.0% | |
| ! | CTTCCGGTATTTCTTGCTGT+TGG | + | chr5.3:70475112-70475131 | MS.gene37835:CDS | 45.0% |
| ! | CTTTTGCTCGTATTTCTCGG+TGG | + | chr5.3:70474965-70474984 | MS.gene37835:CDS | 45.0% |
| ! | GCGTCGGTAGTTATCAAGAA+TGG | + | chr5.3:70475309-70475328 | MS.gene37835:intron | 45.0% |
| ! | TGGCTTCCTTTTTCCATCGT+GGG | + | chr5.3:70473269-70473288 | MS.gene37835:CDS | 45.0% |
| !! | GCTACAGCCATTTTCTCCAT+GGG | - | chr5.3:70475049-70475068 | None:intergenic | 45.0% |
| !! | AAAATTTATTAATAATTTCA+TGG | + | chr5.3:70475543-70475562 | MS.gene37835:intron | 5.0% |
| !!! | TATTGTTTTTTTTTTTTTTT+TGG | + | chr5.3:70474384-70474403 | MS.gene37835:intron | 5.0% |
| ACCATGGCTAACACCATTGC+TGG | + | chr5.3:70474914-70474933 | MS.gene37835:CDS | 50.0% | |
| CACCGTTTCTTCACCAGCAA+TGG | - | chr5.3:70474930-70474949 | None:intergenic | 50.0% | |
| GAAGATCTGTCCACAATCGG+AGG | + | chr5.3:70473203-70473222 | MS.gene37835:CDS | 50.0% | |
| GATTGTGGACAGATCTTCGG+CGG | - | chr5.3:70473201-70473220 | None:intergenic | 50.0% | |
| GCCGAAGATCTGTCCACAAT+CGG | + | chr5.3:70473200-70473219 | MS.gene37835:CDS | 50.0% | |
| GCTTTCGTGTGCAAATGCAG+TGG | + | chr5.3:70475247-70475266 | MS.gene37835:intron | 50.0% | |
| GGAAAAAGGAAGCCAGTGTG+TGG | - | chr5.3:70473264-70473283 | None:intergenic | 50.0% | |
| GGGCCAGTTCAAAGGAAACA+TGG | - | chr5.3:70474797-70474816 | None:intergenic | 50.0% | |
| GTAGCACAAGGAGACAATGC+AGG | - | chr5.3:70475088-70475107 | None:intergenic | 50.0% | |
| TCATTCGCACAACCAACCCA+TGG | + | chr5.3:70475030-70475049 | MS.gene37835:CDS | 50.0% | |
| ! | ACCAGCAATGGTGTTAGCCA+TGG | - | chr5.3:70474918-70474937 | None:intergenic | 50.0% |
| ! | CTGGCTTCCTTTTTCCATCG+TGG | + | chr5.3:70473268-70473287 | MS.gene37835:CDS | 50.0% |
| !! | ACCGGAAGTGTTGTAGCACA+AGG | - | chr5.3:70475100-70475119 | None:intergenic | 50.0% |
| !! | CAGCCATTTTCTCCATGGGT+TGG | - | chr5.3:70475045-70475064 | None:intergenic | 50.0% |
| !! | GGCTACAGCCATTTTCTCCA+TGG | - | chr5.3:70475050-70475069 | None:intergenic | 50.0% |
| AGTGGCGATTCCTCCGATTG+TGG | - | chr5.3:70473216-70473235 | None:intergenic | 55.0% | |
| CCTGAGTAGCAGCACGATGA+TGG | - | chr5.3:70475164-70475183 | None:intergenic | 55.0% | |
| CGAACTGTGGGCCAGTTCAA+AGG | - | chr5.3:70474805-70474824 | None:intergenic | 55.0% | |
| GCACGACCCACGATGGAAAA+AGG | - | chr5.3:70473278-70473297 | None:intergenic | 55.0% | |
| GGATGTGAGATGGAAGAGGG+TGG | + | chr5.3:70473661-70473680 | MS.gene37835:intron | 55.0% | |
| TAGCTACCCTGGAGAGCTTG+AGG | + | chr5.3:70474193-70474212 | MS.gene37835:intron | 55.0% | |
| TCGTGGGTCGTGCTCAGAAA+TGG | + | chr5.3:70473285-70473304 | MS.gene37835:CDS | 55.0% | |
| TTTCTGAGCACGACCCACGA+TGG | - | chr5.3:70473285-70473304 | None:intergenic | 55.0% | |
| ! | CCATCATCGTGCTGCTACTC+AGG | + | chr5.3:70475161-70475180 | MS.gene37835:CDS | 55.0% |
| ! | GATGATGGCGAGCACCATCA+TGG | - | chr5.3:70475149-70475168 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 70473185 | 70476359 | 70473185 | ID=MS.gene37835 |
| chr5.3 | mRNA | 70473185 | 70476359 | 70473185 | ID=MS.gene37835.t1;Parent=MS.gene37835 |
| chr5.3 | exon | 70473185 | 70473332 | 70473185 | ID=MS.gene37835.t1.exon1;Parent=MS.gene37835.t1 |
| chr5.3 | CDS | 70473185 | 70473332 | 70473185 | ID=cds.MS.gene37835.t1;Parent=MS.gene37835.t1 |
| chr5.3 | exon | 70474855 | 70475182 | 70474855 | ID=MS.gene37835.t1.exon2;Parent=MS.gene37835.t1 |
| chr5.3 | CDS | 70474855 | 70475182 | 70474855 | ID=cds.MS.gene37835.t1;Parent=MS.gene37835.t1 |
| chr5.3 | exon | 70476161 | 70476359 | 70476161 | ID=MS.gene37835.t1.exon3;Parent=MS.gene37835.t1 |
| chr5.3 | CDS | 70476161 | 70476359 | 70476161 | ID=cds.MS.gene37835.t1;Parent=MS.gene37835.t1 |
| Gene Sequence |
| Protein sequence |
