Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39018.t1 | XP_003624978.2 | 93.9 | 329 | 19 | 1 | 1 | 328 | 66 | 394 | 4.80E-189 | 670.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39018.t1 | Q6NLB1 | 58.8 | 313 | 124 | 2 | 21 | 328 | 59 | 371 | 1.3e-115 | 417.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39018.t1 | Q2HSY4 | 93.9 | 329 | 19 | 1 | 1 | 328 | 66 | 394 | 3.4e-189 | 670.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049435 | MS.gene39018 | 0.800618 | 1.32E-48 | -1.69E-46 |
| MS.gene050020 | MS.gene39018 | 0.826484 | 2.65E-54 | -1.69E-46 |
| MS.gene05016 | MS.gene39018 | 0.805031 | 1.62E-49 | -1.69E-46 |
| MS.gene050438 | MS.gene39018 | 0.802271 | 6.07E-49 | -1.69E-46 |
| MS.gene050586 | MS.gene39018 | 0.800768 | 1.23E-48 | -1.69E-46 |
| MS.gene050787 | MS.gene39018 | 0.812086 | 5.06E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene39018 | 0.806669 | 7.35E-50 | -1.69E-46 |
| MS.gene051265 | MS.gene39018 | 0.810827 | 9.50E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene39018 | 0.814531 | 1.47E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene39018 | 0.801423 | 9.07E-49 | -1.69E-46 |
| MS.gene053221 | MS.gene39018 | 0.800179 | 1.63E-48 | -1.69E-46 |
| MS.gene053565 | MS.gene39018 | 0.803555 | 3.30E-49 | -1.69E-46 |
| MS.gene053883 | MS.gene39018 | 0.808301 | 3.31E-50 | -1.69E-46 |
| MS.gene054833 | MS.gene39018 | 0.955724 | 1.57E-113 | -1.69E-46 |
| MS.gene055356 | MS.gene39018 | 0.818922 | 1.52E-52 | -1.69E-46 |
| MS.gene055357 | MS.gene39018 | 0.8165 | 5.36E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene39018 | 0.813598 | 2.36E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene39018 | 0.806599 | 7.61E-50 | -1.69E-46 |
| MS.gene056173 | MS.gene39018 | 0.818303 | 2.10E-52 | -1.69E-46 |
| MS.gene056498 | MS.gene39018 | 0.803781 | 2.96E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene39018 | 0.811035 | 8.56E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene39018 | 0.828201 | 1.03E-54 | -1.69E-46 |
| MS.gene059128 | MS.gene39018 | 0.834301 | 3.24E-56 | -1.69E-46 |
| MS.gene060137 | MS.gene39018 | -0.809053 | 2.29E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene39018 | 0.801178 | 1.02E-48 | -1.69E-46 |
| MS.gene060480 | MS.gene39018 | 0.805968 | 1.03E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene39018 | 0.810414 | 1.17E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39018.t1 | MTR_7g089640 | 93.921 | 329 | 19 | 1 | 1 | 328 | 66 | 394 | 0.0 | 620 |
| MS.gene39018.t1 | MTR_5g089110 | 56.140 | 342 | 135 | 4 | 1 | 328 | 59 | 399 | 1.45e-140 | 403 |
| MS.gene39018.t1 | MTR_3g436860 | 57.738 | 336 | 133 | 4 | 1 | 328 | 1 | 335 | 1.53e-138 | 396 |
| MS.gene39018.t1 | MTR_5g089110 | 54.577 | 284 | 114 | 4 | 1 | 270 | 59 | 341 | 6.62e-108 | 318 |
| MS.gene39018.t1 | MTR_3g436860 | 56.115 | 278 | 113 | 4 | 1 | 270 | 66 | 342 | 4.17e-104 | 310 |
| MS.gene39018.t1 | MTR_7g089730 | 46.429 | 308 | 147 | 7 | 23 | 321 | 11 | 309 | 1.14e-84 | 258 |
| MS.gene39018.t1 | MTR_7g089670 | 42.857 | 308 | 163 | 5 | 17 | 321 | 9 | 306 | 4.68e-83 | 254 |
| MS.gene39018.t1 | MTR_7g089700 | 38.066 | 331 | 185 | 10 | 1 | 326 | 2 | 317 | 1.54e-61 | 199 |
| MS.gene39018.t1 | MTR_7g089720 | 36.858 | 331 | 189 | 9 | 1 | 326 | 1 | 316 | 2.73e-61 | 198 |
| MS.gene39018.t1 | MTR_6g039460 | 37.700 | 313 | 175 | 7 | 21 | 326 | 18 | 317 | 2.37e-56 | 186 |
| MS.gene39018.t1 | MTR_7g089560 | 80.519 | 77 | 14 | 1 | 1 | 76 | 54 | 130 | 1.30e-24 | 97.1 |
| MS.gene39018.t1 | MTR_1030s0010 | 38.095 | 126 | 66 | 3 | 35 | 154 | 2 | 121 | 2.03e-18 | 80.1 |
| MS.gene39018.t1 | MTR_6g039470 | 42.529 | 87 | 49 | 1 | 21 | 106 | 90 | 176 | 2.08e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39018.t1 | AT2G26850 | 58.786 | 313 | 124 | 2 | 21 | 328 | 59 | 371 | 3.32e-141 | 404 |
| MS.gene39018.t1 | AT2G32560 | 57.143 | 315 | 128 | 3 | 20 | 328 | 58 | 371 | 1.97e-134 | 387 |
| MS.gene39018.t1 | AT2G41170 | 52.778 | 324 | 139 | 4 | 16 | 328 | 51 | 371 | 1.92e-113 | 333 |
| MS.gene39018.t1 | AT2G41170 | 47.899 | 357 | 139 | 5 | 16 | 328 | 51 | 404 | 1.08e-106 | 317 |
| MS.gene39018.t1 | AT2G32560 | 56.175 | 251 | 104 | 2 | 20 | 264 | 58 | 308 | 8.27e-104 | 308 |
| MS.gene39018.t1 | AT2G26850 | 56.828 | 227 | 91 | 3 | 21 | 241 | 59 | 284 | 3.24e-89 | 269 |
| MS.gene39018.t1 | AT2G41170 | 53.782 | 238 | 97 | 3 | 16 | 242 | 51 | 286 | 1.35e-75 | 234 |
Find 61 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTGAGGAAAACATAAAA+TGG | 0.213796 | 7.3:-19647653 | MS.gene39018:CDS |
| ACAATACTTGCTTTCCTTCA+TGG | 0.246700 | 7.3:-19648424 | MS.gene39018:CDS |
| TGAATTCTTCTCTATGCTTT+TGG | 0.274166 | 7.3:+19648468 | None:intergenic |
| GATGTAGAAGTGATTATTTA+TGG | 0.288645 | 7.3:-19648567 | MS.gene39018:CDS |
| GGTGACAGATCCAGTGATTT+TGG | 0.292587 | 7.3:-19647045 | MS.gene39018:intron |
| CACAAGTGTGCAAATCTCTT+AGG | 0.319042 | 7.3:-19648594 | MS.gene39018:CDS |
| GCAATTACAAAACAAGAGTT+TGG | 0.359351 | 7.3:-19648734 | MS.gene39018:CDS |
| GTATAGTGTCATTGGTCATT+TGG | 0.367045 | 7.3:-19647213 | MS.gene39018:CDS |
| CTTTATCTTTCTCTTGAGAA+TGG | 0.369439 | 7.3:-19648325 | MS.gene39018:CDS |
| CATTGCCAATGTCACAATAA+AGG | 0.376211 | 7.3:-19647167 | MS.gene39018:intron |
| GAACAAGGAAATGAAATAGA+AGG | 0.401759 | 7.3:-19646957 | MS.gene39018:CDS |
| ATGTAGAAGTGATTATTTAT+GGG | 0.401802 | 7.3:-19648566 | MS.gene39018:CDS |
| TTACCTCACGGTTATAAACT+TGG | 0.402760 | 7.3:+19648284 | None:intergenic |
| TGAAGAGAAAGCTTCTCTCT+TGG | 0.434156 | 7.3:-19648683 | MS.gene39018:CDS |
| TGCTTAGATGACTTAAGGCC+TGG | 0.434332 | 7.3:-19647573 | MS.gene39018:CDS |
| AGAAACATATGAAGATGAAA+TGG | 0.438111 | 7.3:-19648543 | MS.gene39018:CDS |
| AGAAACAAGGAGTTCCCTTA+TGG | 0.448940 | 7.3:-19647525 | MS.gene39018:intron |
| TTACAAAGTGGAAGAAACTT+TGG | 0.456123 | 7.3:-19646893 | MS.gene39018:CDS |
| CTGACTGCTTAGATGACTTA+AGG | 0.460389 | 7.3:-19647578 | MS.gene39018:CDS |
| GAAACATATGAAGATGAAAT+GGG | 0.469405 | 7.3:-19648542 | MS.gene39018:CDS |
| TTTGATTTAATCCAAAAGAA+AGG | 0.469457 | 7.3:+19648394 | None:intergenic |
| GGTTGGTGGTATAGTGTCAT+TGG | 0.469917 | 7.3:-19647221 | MS.gene39018:CDS |
| AGAGCAGCAATTGAGTCATC+TGG | 0.473004 | 7.3:+19648346 | None:intergenic |
| TCTTACCTTTATTGTGACAT+TGG | 0.477470 | 7.3:+19647162 | None:intergenic |
| TTGCACATACCTTGCTTGAA+AGG | 0.477849 | 7.3:+19648053 | None:intergenic |
| AACTGAGGAAAACATAAAAT+GGG | 0.478038 | 7.3:-19647652 | MS.gene39018:CDS |
| ACAAGTGTGCAAATCTCTTA+GGG | 0.485793 | 7.3:-19648593 | MS.gene39018:CDS |
| ACATGTGAAGAAGAGTCAAT+AGG | 0.486449 | 7.3:+19647612 | None:intergenic |
| TCACGGTTATAAACTTGGGC+AGG | 0.488493 | 7.3:+19648289 | None:intergenic |
| TGAATTTCAACATGATCTCC+AGG | 0.504590 | 7.3:+19647555 | None:intergenic |
| CTTTATTGTGACATTGGCAA+TGG | 0.507841 | 7.3:+19647168 | None:intergenic |
| GGATTTGCATGATTTACCAT+TGG | 0.508970 | 7.3:-19648662 | MS.gene39018:CDS |
| TTGGAAACATGTCAAGGTGA+TGG | 0.516906 | 7.3:-19647194 | MS.gene39018:CDS |
| TGGAAACATGTCAAGGTGAT+GGG | 0.523680 | 7.3:-19647193 | MS.gene39018:CDS |
| TGTGTGAACTCCAAAATCAC+TGG | 0.525464 | 7.3:+19647035 | None:intergenic |
| TCTGACAGGTACTCACCTCA+TGG | 0.532267 | 7.3:-19647684 | MS.gene39018:intron |
| TACCTCACGGTTATAAACTT+GGG | 0.540506 | 7.3:+19648285 | None:intergenic |
| GTGATTCTGCTTATAGACAA+TGG | 0.546392 | 7.3:-19648507 | MS.gene39018:CDS |
| GAGTTCACACAATACACAGC+TGG | 0.557018 | 7.3:-19647023 | MS.gene39018:CDS |
| GGTACTCACCTCATGGGAGA+TGG | 0.562172 | 7.3:-19647677 | MS.gene39018:CDS |
| TAGGATGAGACATACCATAA+GGG | 0.562365 | 7.3:+19647511 | None:intergenic |
| AATACACAGCTGGCTCAAGA+TGG | 0.566869 | 7.3:-19647013 | MS.gene39018:CDS |
| GAGATCATGTTGAAATTCAG+TGG | 0.569671 | 7.3:-19647551 | MS.gene39018:CDS |
| TTGGCATCAAAATTTGAGCA+TGG | 0.572122 | 7.3:-19648715 | MS.gene39018:CDS |
| GAACAGATGCCTTTCAAGCA+AGG | 0.573120 | 7.3:-19648062 | MS.gene39018:intron |
| AGGAAAACATAAAATGGGAA+AGG | 0.579315 | 7.3:-19647647 | MS.gene39018:CDS |
| GCCACATTGCGTAATTCACT+AGG | 0.583205 | 7.3:+19648616 | None:intergenic |
| AGAAAGGAAGAAAACCATGA+AGG | 0.585722 | 7.3:+19648410 | None:intergenic |
| CACGGTTATAAACTTGGGCA+GGG | 0.616974 | 7.3:+19648290 | None:intergenic |
| GGTCATTTGGAAACATGTCA+AGG | 0.617542 | 7.3:-19647200 | MS.gene39018:CDS |
| AATCAGAAAGTTGCATAGCA+AGG | 0.629679 | 7.3:-19646922 | MS.gene39018:CDS |
| CTGACAGGTACTCACCTCAT+GGG | 0.633290 | 7.3:-19647683 | MS.gene39018:intron |
| ACCTAGTGAATTACGCAATG+TGG | 0.637424 | 7.3:-19648617 | MS.gene39018:CDS |
| AATTCAGTGGAGAAGAAACA+AGG | 0.638341 | 7.3:-19647538 | MS.gene39018:CDS |
| TCAGTTGTCCATCTCCCATG+AGG | 0.638779 | 7.3:+19647669 | None:intergenic |
| AAACATATGAAGATGAAATG+GGG | 0.657925 | 7.3:-19648541 | MS.gene39018:CDS |
| CAGAAAGTTGCATAGCAAGG+AGG | 0.668496 | 7.3:-19646919 | MS.gene39018:CDS |
| GCAAGGAGGAGATTACAAAG+TGG | 0.681205 | 7.3:-19646905 | MS.gene39018:CDS |
| TGTGAAGAAGAGTCAATAGG+TGG | 0.697492 | 7.3:+19647615 | None:intergenic |
| TGCCCAAGTTTATAACCGTG+AGG | 0.709466 | 7.3:-19648287 | MS.gene39018:intron |
| TCATGGGAGATGGACAACTG+AGG | 0.731418 | 7.3:-19647667 | MS.gene39018:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATACTAATTTTTAAATCA+GGG | + | chr7.3:19647397-19647416 | None:intergenic | 10.0% |
| !!! | TTAATACTAATTTTTAAATC+AGG | + | chr7.3:19647398-19647417 | None:intergenic | 10.0% |
| !!! | TTTTAAAAATGTTTTGTTAT+AGG | - | chr7.3:19648366-19648385 | MS.gene39018:CDS | 10.0% |
| !!! | AATATTTTGTCTTGTAATTA+AGG | - | chr7.3:19647420-19647439 | MS.gene39018:intron | 15.0% |
| !!! | ATATTTTGTCTTGTAATTAA+GGG | - | chr7.3:19647421-19647440 | MS.gene39018:intron | 15.0% |
| !!! | TCAATAGTTTAACATTTTAT+AGG | - | chr7.3:19647854-19647873 | MS.gene39018:intron | 15.0% |
| !!! | TTGATAATAGTTAATATTCT+AGG | + | chr7.3:19648228-19648247 | None:intergenic | 15.0% |
| !! | AAAGTGACAACATAATTTAA+GGG | + | chr7.3:19648511-19648530 | None:intergenic | 20.0% |
| !! | AATAACCTATGAAATACTAA+AGG | - | chr7.3:19647670-19647689 | MS.gene39018:CDS | 20.0% |
| !! | ATAATTAAAATGTATGCTAG+TGG | + | chr7.3:19648476-19648495 | None:intergenic | 20.0% |
| !! | ATGTAGAAGTGATTATTTAT+GGG | - | chr7.3:19647042-19647061 | MS.gene39018:intron | 20.0% |
| !! | GATGATTAAATCAATAATGT+TGG | - | chr7.3:19648542-19648561 | MS.gene39018:CDS | 20.0% |
| !! | TAAAGTGACAACATAATTTA+AGG | + | chr7.3:19648512-19648531 | None:intergenic | 20.0% |
| !! | TTATGTCAGTAGATAAATAA+AGG | - | chr7.3:19648188-19648207 | MS.gene39018:intron | 20.0% |
| !!! | AAAAATGTTTTGTTATAGGT+TGG | - | chr7.3:19648370-19648389 | MS.gene39018:CDS | 20.0% |
| !!! | AATGAAATAGAAGGTTTTTA+TGG | - | chr7.3:19648660-19648679 | MS.gene39018:CDS | 20.0% |
| !!! | AATTAAACCAAAAGTACAAT+AGG | + | chr7.3:19647640-19647659 | None:intergenic | 20.0% |
| !!! | ATGAAATAGAAGGTTTTTAT+GGG | - | chr7.3:19648661-19648680 | MS.gene39018:CDS | 20.0% |
| !!! | TTTGATTTAATCCAAAAGAA+AGG | + | chr7.3:19647217-19647236 | None:intergenic | 20.0% |
| !!! | TTTTAAGTACATTTTCAGAA+TGG | - | chr7.3:19647470-19647489 | MS.gene39018:intron | 20.0% |
| ! | AAACATATGAAGATGAAATG+GGG | - | chr7.3:19647067-19647086 | MS.gene39018:intron | 25.0% |
| ! | AACTGAGGAAAACATAAAAT+GGG | - | chr7.3:19647956-19647975 | MS.gene39018:intron | 25.0% |
| ! | AAGTGACAACATAATTTAAG+GGG | + | chr7.3:19648510-19648529 | None:intergenic | 25.0% |
| ! | AGAAAAAATCATAGAGAACA+AGG | - | chr7.3:19648636-19648655 | MS.gene39018:CDS | 25.0% |
| ! | AGAAACATATGAAGATGAAA+TGG | - | chr7.3:19647065-19647084 | MS.gene39018:intron | 25.0% |
| ! | CATTCAATATTGTTGAGTTT+AGG | - | chr7.3:19647587-19647606 | MS.gene39018:CDS | 25.0% |
| ! | GAAACATATGAAGATGAAAT+GGG | - | chr7.3:19647066-19647085 | MS.gene39018:intron | 25.0% |
| ! | GATGTAGAAGTGATTATTTA+TGG | - | chr7.3:19647041-19647060 | MS.gene39018:intron | 25.0% |
| ! | TATCAATGTTTGTGATAGAT+TGG | - | chr7.3:19648242-19648261 | MS.gene39018:intron | 25.0% |
| !! | TGAAATAGAAGGTTTTTATG+GGG | - | chr7.3:19648662-19648681 | MS.gene39018:CDS | 25.0% |
| !!! | TTTTCAAGAATACAATCCAA+TGG | + | chr7.3:19646965-19646984 | None:intergenic | 25.0% |
| AGGAAAACATAAAATGGGAA+AGG | - | chr7.3:19647961-19647980 | MS.gene39018:intron | 30.0% | |
| AGGTAAAAAGACAAGTTGTT+TGG | + | chr7.3:19647615-19647634 | None:intergenic | 30.0% | |
| CAACTGAGGAAAACATAAAA+TGG | - | chr7.3:19647955-19647974 | MS.gene39018:intron | 30.0% | |
| CAGAAAAACACATAAAGTCA+AGG | - | chr7.3:19647239-19647258 | MS.gene39018:intron | 30.0% | |
| CTTTATCTTTCTCTTGAGAA+TGG | - | chr7.3:19647283-19647302 | MS.gene39018:intron | 30.0% | |
| GAACAAGGAAATGAAATAGA+AGG | - | chr7.3:19648651-19648670 | MS.gene39018:CDS | 30.0% | |
| GCAATTACAAAACAAGAGTT+TGG | - | chr7.3:19646874-19646893 | MS.gene39018:CDS | 30.0% | |
| GGTATCCTTTAGTATTTCAT+AGG | + | chr7.3:19647678-19647697 | None:intergenic | 30.0% | |
| GTCAGTAGATAAATAAAGGT+CGG | - | chr7.3:19648192-19648211 | MS.gene39018:intron | 30.0% | |
| TCTTACCTTTATTGTGACAT+TGG | + | chr7.3:19648449-19648468 | None:intergenic | 30.0% | |
| TTACAAAGTGGAAGAAACTT+TGG | - | chr7.3:19648715-19648734 | MS.gene39018:CDS | 30.0% | |
| TTAGATATTGCACAACAACT+AGG | + | chr7.3:19648119-19648138 | None:intergenic | 30.0% | |
| TTTATGCGACTATTTAGAAG+AGG | + | chr7.3:19648165-19648184 | None:intergenic | 30.0% | |
| ! | ATGGTTTTCTTCCTTTCTTT+TGG | - | chr7.3:19647203-19647222 | MS.gene39018:CDS | 30.0% |
| ! | CTCTTGAGAATGGAAATTTT+TGG | - | chr7.3:19647293-19647312 | MS.gene39018:intron | 30.0% |
| ! | GAAATAGAAGGTTTTTATGG+GGG | - | chr7.3:19648663-19648682 | MS.gene39018:CDS | 30.0% |
| ! | TGAATTCTTCTCTATGCTTT+TGG | + | chr7.3:19647143-19647162 | None:intergenic | 30.0% |
| !! | AATGTTTTGTTATAGGTTGG+TGG | - | chr7.3:19648373-19648392 | MS.gene39018:CDS | 30.0% |
| !!! | TCATTCATGTTTTTTCTGAC+AGG | - | chr7.3:19647910-19647929 | MS.gene39018:intron | 30.0% |
| AATCAGAAAGTTGCATAGCA+AGG | - | chr7.3:19648686-19648705 | MS.gene39018:CDS | 35.0% | |
| AATTCAGTGGAGAAGAAACA+AGG | - | chr7.3:19648070-19648089 | MS.gene39018:CDS | 35.0% | |
| ACAAGTGTGCAAATCTCTTA+GGG | - | chr7.3:19647015-19647034 | MS.gene39018:CDS | 35.0% | |
| ACAATACTTGCTTTCCTTCA+TGG | - | chr7.3:19647184-19647203 | MS.gene39018:CDS | 35.0% | |
| ACATGTGAAGAAGAGTCAAT+AGG | + | chr7.3:19647999-19648018 | None:intergenic | 35.0% | |
| ACTTCAGACCAAAATCATTC+TGG | + | chr7.3:19647805-19647824 | None:intergenic | 35.0% | |
| AGAAAGGAAGAAAACCATGA+AGG | + | chr7.3:19647201-19647220 | None:intergenic | 35.0% | |
| CATTGCCAATGTCACAATAA+AGG | - | chr7.3:19648441-19648460 | MS.gene39018:CDS | 35.0% | |
| CTTTATTGTGACATTGGCAA+TGG | + | chr7.3:19648443-19648462 | None:intergenic | 35.0% | |
| GAGATCATGTTGAAATTCAG+TGG | - | chr7.3:19648057-19648076 | MS.gene39018:intron | 35.0% | |
| GGATTTGCATGATTTACCAT+TGG | - | chr7.3:19646946-19646965 | MS.gene39018:CDS | 35.0% | |
| GTGATTCTGCTTATAGACAA+TGG | - | chr7.3:19647101-19647120 | MS.gene39018:intron | 35.0% | |
| TACCTCACGGTTATAAACTT+GGG | + | chr7.3:19647326-19647345 | None:intergenic | 35.0% | |
| TAGGATGAGACATACCATAA+GGG | + | chr7.3:19648100-19648119 | None:intergenic | 35.0% | |
| TATAACCGTGAGGTAAATAC+TGG | - | chr7.3:19647331-19647350 | MS.gene39018:intron | 35.0% | |
| TGAATTTCAACATGATCTCC+AGG | + | chr7.3:19648056-19648075 | None:intergenic | 35.0% | |
| TTACCTCACGGTTATAAACT+TGG | + | chr7.3:19647327-19647346 | None:intergenic | 35.0% | |
| TTGGCATCAAAATTTGAGCA+TGG | - | chr7.3:19646893-19646912 | MS.gene39018:CDS | 35.0% | |
| ! | AACCAAAAGTACAATAGGAC+AGG | + | chr7.3:19647635-19647654 | None:intergenic | 35.0% |
| ! | ATGAAATGGGGCAAAGTTTT+AGG | - | chr7.3:19647079-19647098 | MS.gene39018:intron | 35.0% |
| ! | GTATAGTGTCATTGGTCATT+TGG | - | chr7.3:19648395-19648414 | MS.gene39018:CDS | 35.0% |
| ! | TACCTGTCCTATTGTACTTT+TGG | - | chr7.3:19647630-19647649 | MS.gene39018:CDS | 35.0% |
| ! | TAGTGTCTACGTGTTAGTTT+CGG | + | chr7.3:19647711-19647730 | None:intergenic | 35.0% |
| ACCTAGTGAATTACGCAATG+TGG | - | chr7.3:19646991-19647010 | MS.gene39018:CDS | 40.0% | |
| AGAAACAAGGAGTTCCCTTA+TGG | - | chr7.3:19648083-19648102 | MS.gene39018:CDS | 40.0% | |
| CACAAGTGTGCAAATCTCTT+AGG | - | chr7.3:19647014-19647033 | MS.gene39018:CDS | 40.0% | |
| CTAGGATGAGACATACCATA+AGG | + | chr7.3:19648101-19648120 | None:intergenic | 40.0% | |
| CTGACTGCTTAGATGACTTA+AGG | - | chr7.3:19648030-19648049 | MS.gene39018:intron | 40.0% | |
| GGTCATTTGGAAACATGTCA+AGG | - | chr7.3:19648408-19648427 | MS.gene39018:CDS | 40.0% | |
| TGAAGAGAAAGCTTCTCTCT+TGG | - | chr7.3:19646925-19646944 | MS.gene39018:CDS | 40.0% | |
| TGCAACCAGTATTTACCTCA+CGG | + | chr7.3:19647339-19647358 | None:intergenic | 40.0% | |
| TGGAAACATGTCAAGGTGAT+GGG | - | chr7.3:19648415-19648434 | MS.gene39018:CDS | 40.0% | |
| TGTGAAGAAGAGTCAATAGG+TGG | + | chr7.3:19647996-19648015 | None:intergenic | 40.0% | |
| TGTGTGAACTCCAAAATCAC+TGG | + | chr7.3:19648576-19648595 | None:intergenic | 40.0% | |
| TTGCACATACCTTGCTTGAA+AGG | + | chr7.3:19647558-19647577 | None:intergenic | 40.0% | |
| TTGGAAACATGTCAAGGTGA+TGG | - | chr7.3:19648414-19648433 | MS.gene39018:CDS | 40.0% | |
| ! | CATTTTCAGAATGGTCATGC+TGG | - | chr7.3:19647479-19647498 | MS.gene39018:intron | 40.0% |
| ! | GTCAGACACCAGAATGATTT+TGG | - | chr7.3:19647794-19647813 | MS.gene39018:intron | 40.0% |
| !! | TACTGGTTGCATGCAGATTT+TGG | - | chr7.3:19647348-19647367 | MS.gene39018:intron | 40.0% |
| AGAGCAGCAATTGAGTCATC+TGG | + | chr7.3:19647265-19647284 | None:intergenic | 45.0% | |
| ATCATTCTGGTGTCTGACAC+TGG | + | chr7.3:19647792-19647811 | None:intergenic | 45.0% | |
| CACGGTTATAAACTTGGGCA+GGG | + | chr7.3:19647321-19647340 | None:intergenic | 45.0% | |
| CAGAAAGTTGCATAGCAAGG+AGG | - | chr7.3:19648689-19648708 | MS.gene39018:CDS | 45.0% | |
| GAACAGATGCCTTTCAAGCA+AGG | - | chr7.3:19647546-19647565 | MS.gene39018:CDS | 45.0% | |
| GAGTTCACACAATACACAGC+TGG | - | chr7.3:19648585-19648604 | MS.gene39018:CDS | 45.0% | |
| GCAAGGAGGAGATTACAAAG+TGG | - | chr7.3:19648703-19648722 | MS.gene39018:CDS | 45.0% | |
| GCACATGACACTAACACATG+TGG | + | chr7.3:19647770-19647789 | None:intergenic | 45.0% | |
| GCCACATTGCGTAATTCACT+AGG | + | chr7.3:19646995-19647014 | None:intergenic | 45.0% | |
| TCACGGTTATAAACTTGGGC+AGG | + | chr7.3:19647322-19647341 | None:intergenic | 45.0% | |
| TGCCCAAGTTTATAACCGTG+AGG | - | chr7.3:19647321-19647340 | MS.gene39018:intron | 45.0% | |
| TGCTTAGATGACTTAAGGCC+TGG | - | chr7.3:19648035-19648054 | MS.gene39018:intron | 45.0% | |
| ! | AATACACAGCTGGCTCAAGA+TGG | - | chr7.3:19648595-19648614 | MS.gene39018:CDS | 45.0% |
| ! | GGTGACAGATCCAGTGATTT+TGG | - | chr7.3:19648563-19648582 | MS.gene39018:CDS | 45.0% |
| !! | GGTTGGTGGTATAGTGTCAT+TGG | - | chr7.3:19648387-19648406 | MS.gene39018:CDS | 45.0% |
| CTGACAGGTACTCACCTCAT+GGG | - | chr7.3:19647925-19647944 | MS.gene39018:intron | 50.0% | |
| TCAGTTGTCCATCTCCCATG+AGG | + | chr7.3:19647942-19647961 | None:intergenic | 50.0% | |
| TCATGGGAGATGGACAACTG+AGG | - | chr7.3:19647941-19647960 | MS.gene39018:intron | 50.0% | |
| TCTGACAGGTACTCACCTCA+TGG | - | chr7.3:19647924-19647943 | MS.gene39018:intron | 50.0% | |
| !! | GTTAGTTTCGGTGTCGTGTC+TGG | + | chr7.3:19647699-19647718 | None:intergenic | 50.0% |
| GGTACTCACCTCATGGGAGA+TGG | - | chr7.3:19647931-19647950 | MS.gene39018:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 19646872 | 19648758 | 19646872 | ID=MS.gene39018 |
| chr7.3 | mRNA | 19646872 | 19648758 | 19646872 | ID=MS.gene39018.t1;Parent=MS.gene39018 |
| chr7.3 | exon | 19648288 | 19648758 | 19648288 | ID=MS.gene39018.t1.exon1;Parent=MS.gene39018.t1 |
| chr7.3 | CDS | 19648288 | 19648758 | 19648288 | ID=cds.MS.gene39018.t1;Parent=MS.gene39018.t1 |
| chr7.3 | exon | 19648063 | 19648142 | 19648063 | ID=MS.gene39018.t1.exon2;Parent=MS.gene39018.t1 |
| chr7.3 | CDS | 19648063 | 19648142 | 19648063 | ID=cds.MS.gene39018.t1;Parent=MS.gene39018.t1 |
| chr7.3 | exon | 19647526 | 19647698 | 19647526 | ID=MS.gene39018.t1.exon3;Parent=MS.gene39018.t1 |
| chr7.3 | CDS | 19647526 | 19647698 | 19647526 | ID=cds.MS.gene39018.t1;Parent=MS.gene39018.t1 |
| chr7.3 | exon | 19647168 | 19647242 | 19647168 | ID=MS.gene39018.t1.exon4;Parent=MS.gene39018.t1 |
| chr7.3 | CDS | 19647168 | 19647242 | 19647168 | ID=cds.MS.gene39018.t1;Parent=MS.gene39018.t1 |
| chr7.3 | exon | 19646872 | 19647059 | 19646872 | ID=MS.gene39018.t1.exon5;Parent=MS.gene39018.t1 |
| chr7.3 | CDS | 19646872 | 19647059 | 19646872 | ID=cds.MS.gene39018.t1;Parent=MS.gene39018.t1 |
| Gene Sequence |
| Protein sequence |
