Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39049.t1 | XP_004509467.1 | 85.4 | 1236 | 172 | 2 | 1 | 1227 | 1 | 1236 | 0.00E+00 | 1523.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39049.t1 | Q9FJL0 | 65.2 | 1220 | 420 | 2 | 8 | 1226 | 23 | 1239 | 0.0e+00 | 1114.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39049.t1 | A0A1S2YT40 | 85.4 | 1236 | 172 | 2 | 1 | 1227 | 1 | 1236 | 0.0e+00 | 1523.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene035828 | MS.gene39049 | PPI |
| MS.gene39049 | MS.gene040722 | PPI |
| MS.gene39049 | MS.gene73093 | PPI |
| MS.gene39049 | MS.gene61618 | PPI |
| MS.gene99872 | MS.gene39049 | PPI |
| MS.gene35713 | MS.gene39049 | PPI |
| MS.gene39049 | MS.gene035825 | PPI |
| MS.gene39049 | MS.gene061303 | PPI |
| MS.gene39049 | MS.gene043643 | PPI |
| MS.gene39049 | MS.gene84088 | PPI |
| MS.gene043645 | MS.gene39049 | PPI |
| MS.gene073698 | MS.gene39049 | PPI |
| MS.gene39049 | MS.gene034360 | PPI |
| MS.gene39049 | MS.gene043595 | PPI |
| MS.gene39049 | MS.gene95250 | PPI |
| MS.gene064353 | MS.gene39049 | PPI |
| MS.gene035826 | MS.gene39049 | PPI |
| MS.gene39049 | MS.gene66615 | PPI |
| MS.gene39049 | MS.gene070800 | PPI |
| MS.gene45748 | MS.gene39049 | PPI |
| MS.gene39049 | MS.gene059302 | PPI |
| MS.gene39049 | MS.gene064351 | PPI |
| MS.gene39049 | MS.gene043593 | PPI |
| MS.gene39049 | MS.gene056169 | PPI |
| MS.gene016667 | MS.gene39049 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39049.t1 | MTR_8g072890 | 89.376 | 1233 | 125 | 2 | 1 | 1227 | 1 | 1233 | 0.0 | 2214 |
| MS.gene39049.t1 | MTR_7g091430 | 84.810 | 869 | 100 | 7 | 370 | 1227 | 4 | 851 | 0.0 | 1381 |
| MS.gene39049.t1 | MTR_7g091420 | 91.206 | 398 | 29 | 1 | 1 | 392 | 1 | 398 | 0.0 | 729 |
| MS.gene39049.t1 | MTR_8g037325 | 23.991 | 1288 | 749 | 49 | 9 | 1200 | 1 | 1154 | 1.87e-44 | 176 |
| MS.gene39049.t1 | MTR_1g051825 | 22.546 | 1304 | 771 | 46 | 9 | 1203 | 25 | 1198 | 5.44e-42 | 168 |
| MS.gene39049.t1 | MTR_1g051825 | 22.546 | 1304 | 771 | 46 | 9 | 1203 | 1 | 1174 | 1.09e-41 | 167 |
| MS.gene39049.t1 | MTR_0003s0460 | 26.513 | 347 | 194 | 8 | 11 | 353 | 6 | 295 | 8.07e-22 | 103 |
| MS.gene39049.t1 | MTR_1g069910 | 34.615 | 156 | 87 | 3 | 16 | 168 | 15 | 158 | 1.86e-21 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39049.t1 | AT5G48600 | 72.403 | 1232 | 333 | 2 | 2 | 1226 | 11 | 1242 | 0.0 | 1771 |
| MS.gene39049.t1 | AT5G48600 | 72.321 | 1232 | 331 | 3 | 2 | 1226 | 11 | 1239 | 0.0 | 1766 |
| MS.gene39049.t1 | AT3G54670 | 24.332 | 1348 | 752 | 47 | 4 | 1220 | 5 | 1215 | 4.70e-71 | 260 |
| MS.gene39049.t1 | AT3G47460 | 23.975 | 1268 | 771 | 44 | 9 | 1200 | 1 | 1151 | 1.52e-43 | 173 |
| MS.gene39049.t1 | AT3G47460 | 23.910 | 1284 | 755 | 47 | 9 | 1200 | 1 | 1154 | 1.67e-42 | 170 |
| MS.gene39049.t1 | AT5G62410 | 23.083 | 1265 | 789 | 44 | 9 | 1200 | 1 | 1154 | 1.02e-40 | 164 |
| MS.gene39049.t1 | AT2G27170 | 25.877 | 228 | 153 | 5 | 9 | 235 | 1 | 213 | 1.73e-13 | 75.9 |
| MS.gene39049.t1 | AT2G27170 | 25.877 | 228 | 153 | 5 | 9 | 235 | 1 | 213 | 1.73e-13 | 75.9 |
| MS.gene39049.t1 | AT2G27170 | 25.877 | 228 | 153 | 5 | 9 | 235 | 1 | 213 | 2.20e-13 | 75.9 |
| MS.gene39049.t1 | AT2G27170 | 25.877 | 228 | 153 | 5 | 9 | 235 | 1 | 213 | 2.20e-13 | 75.9 |
Find 214 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAACTTGTTTACTTTCT+TGG | 0.119655 | 7.4:+17523043 | None:intergenic |
| TCATGAGGTCCTTGAGATTT+TGG | 0.144036 | 7.4:+17524661 | None:intergenic |
| TGCCATATCATTAAAGTTAA+AGG | 0.163850 | 7.4:-17515841 | MS.gene39049:CDS |
| GATGCTATGTTGTTTGTATT+TGG | 0.179705 | 7.4:-17526017 | MS.gene39049:CDS |
| TCACAGCATCCATCATTATT+TGG | 0.193280 | 7.4:+17517660 | None:intergenic |
| TGAAGGCTTTCTAGAATATT+TGG | 0.204321 | 7.4:-17524638 | MS.gene39049:CDS |
| TTTCAGATTGGATGAGTTTA+TGG | 0.215840 | 7.4:-17515874 | MS.gene39049:intron |
| AAGAGTTATCTCTCTTAAAA+TGG | 0.222577 | 7.4:-17523286 | MS.gene39049:CDS |
| TTCCTTTAACTTTAATGATA+TGG | 0.226102 | 7.4:+17515839 | None:intergenic |
| CGGCGAGTTGTTACTCTTGA+TGG | 0.232790 | 7.4:-17517839 | MS.gene39049:CDS |
| TTCTACCAATCACCACAATT+TGG | 0.265956 | 7.4:-17525864 | MS.gene39049:CDS |
| ACTCGAGCTTGTGGATTCTT+TGG | 0.273460 | 7.4:-17514867 | MS.gene39049:CDS |
| GAACCTTTACTAAATCAAAA+AGG | 0.309554 | 7.4:+17518248 | None:intergenic |
| ATACAAAGAATTGGAAATAA+AGG | 0.310278 | 7.4:-17516456 | MS.gene39049:CDS |
| TCTGCAATTGAATCAAGATT+TGG | 0.311602 | 7.4:+17516165 | None:intergenic |
| ACCTTTCTCTTTCAATTTCT+CGG | 0.312548 | 7.4:+17524837 | None:intergenic |
| TGCTGCTTGTGACCTGAAAA+AGG | 0.320460 | 7.4:-17516235 | MS.gene39049:CDS |
| TGTTGCTACTTTCATGATAT+TGG | 0.323749 | 7.4:-17519796 | MS.gene39049:intron |
| GTGTTGACCTTGACAATAAT+AGG | 0.324515 | 7.4:-17524816 | MS.gene39049:CDS |
| GTGCCCATCTTCCCACCCTT+GGG | 0.327298 | 7.4:+17517770 | None:intergenic |
| GCAATATCAACAGCATGTTC+TGG | 0.331761 | 7.4:-17519894 | MS.gene39049:CDS |
| TTTCTAATTGAGAGAAGATC+TGG | 0.339272 | 7.4:-17523461 | MS.gene39049:CDS |
| GGGATATTATCCTCGAGTTT+TGG | 0.345073 | 7.4:+17522587 | None:intergenic |
| CATCTTGTTCAAGAGCAATT+CGG | 0.348705 | 7.4:+17520767 | None:intergenic |
| ATGCTATGTTGTTTGTATTT+GGG | 0.349242 | 7.4:-17526016 | MS.gene39049:CDS |
| TAATAGGTTTCTGATCCTTC+AGG | 0.349569 | 7.4:-17524800 | MS.gene39049:intron |
| AAATAAGCATTACCTCCTTC+TGG | 0.349782 | 7.4:+17517579 | None:intergenic |
| TGAGCTTGTTAAATTTCGTT+TGG | 0.352641 | 7.4:-17521231 | MS.gene39049:CDS |
| TGTGCCCATCTTCCCACCCT+TGG | 0.360544 | 7.4:+17517769 | None:intergenic |
| AAGGAACAATATGTTTGAAT+TGG | 0.368153 | 7.4:-17514284 | MS.gene39049:CDS |
| GAAGAAAGCATACAAAGAAT+TGG | 0.372232 | 7.4:-17516465 | MS.gene39049:CDS |
| TACAAAGAATTGGAAATAAA+GGG | 0.375070 | 7.4:-17516455 | MS.gene39049:CDS |
| GTTATCAATGTAATACTTAG+AGG | 0.377098 | 7.4:+17524885 | None:intergenic |
| ACAAATTGGATGCAGAATTC+AGG | 0.381557 | 7.4:-17516313 | MS.gene39049:intron |
| GGATGAAATTGACGCCGCTC+TGG | 0.383477 | 7.4:-17514566 | MS.gene39049:CDS |
| TCGTTTGGAGCTTGAACCTT+GGG | 0.390145 | 7.4:-17521216 | MS.gene39049:CDS |
| CAGAATTCAGGTAGATTTAG+TGG | 0.390540 | 7.4:-17516301 | MS.gene39049:CDS |
| TTTAGATTCAGAGAAGAGTC+AGG | 0.392067 | 7.4:-17520713 | MS.gene39049:CDS |
| AAATCTATCATGCACTCTTC+TGG | 0.394132 | 7.4:+17514182 | None:intergenic |
| ATGTATCCCTTCTATTTGTC+CGG | 0.400283 | 7.4:+17520654 | None:intergenic |
| AAGGAAACCGGACAAATAGA+AGG | 0.407101 | 7.4:-17520661 | MS.gene39049:CDS |
| ATTTGGGAAGAGAGCGAAAC+AGG | 0.413124 | 7.4:-17526000 | MS.gene39049:intron |
| ATTACTCTTTCCACTTCCAT+TGG | 0.417625 | 7.4:+17526046 | None:intergenic |
| CAAACACCGGGATGTCTTAG+AGG | 0.421679 | 7.4:-17516647 | MS.gene39049:CDS |
| TTACTCTTTCCACTTCCATT+GGG | 0.422733 | 7.4:+17526047 | None:intergenic |
| CAATATCAACAGCATGTTCT+GGG | 0.423763 | 7.4:-17519893 | MS.gene39049:CDS |
| AATATTTGGAAGATATTGTT+GGG | 0.426789 | 7.4:-17524624 | MS.gene39049:CDS |
| GCTGGAAGATAAAGTGGAAA+AGG | 0.429570 | 7.4:-17522742 | MS.gene39049:intron |
| GTGGATTTGATGCAACTTCA+AGG | 0.430163 | 7.4:+17517436 | None:intergenic |
| ACGCGTTGGCCCCTTTCATA+AGG | 0.431356 | 7.4:-17526168 | MS.gene39049:intron |
| ATCTTGTTCAAGAGCAATTC+GGG | 0.431998 | 7.4:+17520768 | None:intergenic |
| GATGCGATTGAACAAAGTTT+CGG | 0.440406 | 7.4:-17525900 | MS.gene39049:CDS |
| CACAGTTGTTGCTAAGGATC+TGG | 0.441625 | 7.4:-17518182 | MS.gene39049:CDS |
| TAACCCCAAGGGTGGGAAGA+TGG | 0.442250 | 7.4:-17517774 | MS.gene39049:CDS |
| CTTCTGGCAAACGACAAAAC+TGG | 0.442633 | 7.4:+17514198 | None:intergenic |
| TTCGTTTGGAGCTTGAACCT+TGG | 0.449280 | 7.4:-17521217 | MS.gene39049:CDS |
| GACATACTGCTCAAGATGCT+TGG | 0.449959 | 7.4:+17516388 | None:intergenic |
| GAAGTTGACTAAAGGAATAG+AGG | 0.451975 | 7.4:-17516900 | MS.gene39049:CDS |
| ATTCGAAGAAGGAGAAAGAA+AGG | 0.452096 | 7.4:-17516877 | MS.gene39049:CDS |
| TTCCCAGACTCTTAGCTCAC+TGG | 0.454673 | 7.4:-17514638 | MS.gene39049:intron |
| CAATAAATAACCTTATGAAA+GGG | 0.455092 | 7.4:+17526158 | None:intergenic |
| GAATATTTGGAAGATATTGT+TGG | 0.456488 | 7.4:-17524625 | MS.gene39049:CDS |
| TAGGCAACACGCATAGCATA+TGG | 0.457628 | 7.4:-17517878 | MS.gene39049:CDS |
| GAATTGGCTGATCGACTTGT+TGG | 0.461151 | 7.4:-17514268 | MS.gene39049:CDS |
| CGATCGAGCTCGTTCTCTTG+TGG | 0.462152 | 7.4:+17517417 | None:intergenic |
| AGAGTAATATAGAAAAGAAC+AGG | 0.464491 | 7.4:-17520924 | MS.gene39049:CDS |
| TCTTTGATGAAAAGCCTAGA+TGG | 0.465321 | 7.4:+17526230 | None:intergenic |
| AAAGAACAGGCGTGAAGCAT+TGG | 0.465687 | 7.4:-17520911 | MS.gene39049:CDS |
| AGAAAGGTTAACTGAGGAGA+AGG | 0.466952 | 7.4:-17516861 | MS.gene39049:CDS |
| ATCATGAAAGCTAAGGAAAC+CGG | 0.470310 | 7.4:-17520673 | MS.gene39049:CDS |
| TCTTTGGATCCTTTCTCTGA+AGG | 0.472396 | 7.4:-17514851 | MS.gene39049:CDS |
| ATTCGAGCTACAAATGTGTC+TGG | 0.474855 | 7.4:-17517743 | MS.gene39049:CDS |
| TTCAAGAATGTGTCTATCGT+TGG | 0.475077 | 7.4:-17514447 | MS.gene39049:CDS |
| AAGCTAGCTGTTGATGATAC+AGG | 0.476092 | 7.4:-17523248 | MS.gene39049:CDS |
| TGGAATCACAACCACCATCT+AGG | 0.476334 | 7.4:-17526244 | MS.gene39049:CDS |
| CACAAGAGAACGAGCTCGAT+CGG | 0.477864 | 7.4:-17517416 | MS.gene39049:CDS |
| ACTATCCAAATTGTGGTGAT+TGG | 0.479332 | 7.4:+17525859 | None:intergenic |
| GACTGATGAGGAGAGGGTCT+TGG | 0.481328 | 7.4:-17522546 | MS.gene39049:CDS |
| AACCCCAAGGGTGGGAAGAT+GGG | 0.482978 | 7.4:-17517773 | MS.gene39049:CDS |
| TAATGATACGAGGAAGTGTA+AGG | 0.483258 | 7.4:-17522841 | MS.gene39049:CDS |
| TTGCCTAGAAGAAAATCTTA+AGG | 0.484912 | 7.4:-17523192 | MS.gene39049:CDS |
| TGAGAAAGAAAGAGACAGCT+TGG | 0.485868 | 7.4:-17523414 | MS.gene39049:CDS |
| TAACTTATCCGGTGGTGAAA+AGG | 0.487138 | 7.4:-17514780 | MS.gene39049:intron |
| CACAAGGTTCAAATAGAGAC+AGG | 0.488374 | 7.4:-17516938 | MS.gene39049:CDS |
| AAGCAATGCAACTGTTTCAC+AGG | 0.492234 | 7.4:+17516212 | None:intergenic |
| TCAAGAATGTGTCTATCGTT+GGG | 0.493155 | 7.4:-17514446 | MS.gene39049:CDS |
| AGAGAACGAGCTCGATCGGT+TGG | 0.493519 | 7.4:-17517412 | MS.gene39049:CDS |
| GCCCACACCGCTTTATGTAA+TGG | 0.495040 | 7.4:-17514587 | MS.gene39049:CDS |
| ATGCTCAGTTCATTATCATA+AGG | 0.502590 | 7.4:-17514398 | MS.gene39049:intron |
| CCAATAAATAACCTTATGAA+AGG | 0.502639 | 7.4:+17526157 | None:intergenic |
| GAGATCACAGAGAGTTCTAA+AGG | 0.503787 | 7.4:-17522521 | MS.gene39049:intron |
| AAGACAACGCCTTCAGAGAA+AGG | 0.504767 | 7.4:+17514842 | None:intergenic |
| GAAGTGTAAGGAAGAAATCA+AGG | 0.507289 | 7.4:-17522829 | MS.gene39049:CDS |
| CAAGAAGCTGGAAGATAAAG+TGG | 0.507740 | 7.4:-17522748 | MS.gene39049:CDS |
| TCTCAAGGACCTCATGATGA+AGG | 0.509105 | 7.4:-17524655 | MS.gene39049:CDS |
| TGTAATTCGCCAAATAATGA+TGG | 0.509904 | 7.4:-17517669 | MS.gene39049:CDS |
| AAGATCTGGGGTGGTGCAGA+TGG | 0.510779 | 7.4:-17523447 | MS.gene39049:CDS |
| TTACTTCGCAGAGAGAATCT+TGG | 0.511928 | 7.4:-17519819 | MS.gene39049:CDS |
| ACCGAGAAATTGAAAGAGAA+AGG | 0.514385 | 7.4:-17524838 | MS.gene39049:CDS |
| ATTAAAATCTCAGAAGTTGA+AGG | 0.514578 | 7.4:-17517088 | MS.gene39049:CDS |
| AAGAACTTAATGCAGTTACT+CGG | 0.521670 | 7.4:-17516023 | MS.gene39049:CDS |
| TTAGACCACCAAAGAAAAGC+TGG | 0.523255 | 7.4:-17514814 | MS.gene39049:CDS |
| GCGAATTACATTCAATTCAA+CGG | 0.524192 | 7.4:+17517682 | None:intergenic |
| AATTGAAGCTCTTATGAAAG+AGG | 0.524750 | 7.4:-17522633 | MS.gene39049:CDS |
| GAATCGGAAGATCAAGAAGC+TGG | 0.526131 | 7.4:-17522760 | MS.gene39049:CDS |
| GAGAAGCCGTTGCTGCTGAG+AGG | 0.526390 | 7.4:-17517721 | MS.gene39049:CDS |
| AGTGGATCAAGAAAAGCTAC+AGG | 0.526510 | 7.4:-17516283 | MS.gene39049:CDS |
| TAATGCAGTTACTCGGGAGC+GGG | 0.527284 | 7.4:-17516016 | MS.gene39049:CDS |
| GGTGACCTAGGTGCCATTGA+TGG | 0.530320 | 7.4:-17520622 | MS.gene39049:intron |
| ATGATGAAGAAGTTGACTAA+AGG | 0.531726 | 7.4:-17516908 | MS.gene39049:CDS |
| GTGGTTGGACCCAATGGAAG+TGG | 0.534488 | 7.4:-17526056 | MS.gene39049:CDS |
| AGGAATAGAGGATTCGAAGA+AGG | 0.535754 | 7.4:-17516888 | MS.gene39049:CDS |
| ATTTCATCCATTACATAAAG+CGG | 0.536623 | 7.4:+17514580 | None:intergenic |
| TGGATTTGATGCAACTTCAA+GGG | 0.536894 | 7.4:+17517437 | None:intergenic |
| ATGGTGGAAACAATGAGTTT+CGG | 0.537319 | 7.4:-17517859 | MS.gene39049:CDS |
| TCTAGATGATTGACAAACAC+CGG | 0.537409 | 7.4:-17516660 | MS.gene39049:intron |
| TTGGGCATTATGTGAAAGAC+AGG | 0.538235 | 7.4:-17514428 | MS.gene39049:CDS |
| GATGAAATTGACGCCGCTCT+GGG | 0.538279 | 7.4:-17514565 | MS.gene39049:intron |
| TCCATTACATAAAGCGGTGT+GGG | 0.539263 | 7.4:+17514586 | None:intergenic |
| AAAAGCAATCATGAAAGCTA+AGG | 0.540084 | 7.4:-17520680 | MS.gene39049:CDS |
| TCGGCTGTGGTTGGACCCAA+TGG | 0.541762 | 7.4:-17526062 | MS.gene39049:CDS |
| AGCTCTTATGAAAGAGGGTG+AGG | 0.545203 | 7.4:-17522627 | MS.gene39049:CDS |
| GTGACGGTTAATCTCTGAGC+TGG | 0.545265 | 7.4:+17516958 | None:intergenic |
| AGAAAGTAAACAAGTTCTGA+AGG | 0.550815 | 7.4:-17523040 | MS.gene39049:CDS |
| TTGCTTCCTCTAAGACATCC+CGG | 0.550958 | 7.4:+17516641 | None:intergenic |
| AGAAGGGATACATGGACGCA+TGG | 0.552642 | 7.4:-17520644 | MS.gene39049:CDS |
| AGATTGGATGAGTTTATGGA+AGG | 0.553535 | 7.4:-17515870 | MS.gene39049:CDS |
| AATAAATAACCTTATGAAAG+GGG | 0.556525 | 7.4:+17526159 | None:intergenic |
| TGATGCAGAACTCGAGCTTG+TGG | 0.557366 | 7.4:-17514876 | MS.gene39049:CDS |
| AATCTGGAACAATGAGTGGT+GGG | 0.559306 | 7.4:-17517802 | MS.gene39049:CDS |
| TTCTAATTGAGAGAAGATCT+GGG | 0.561375 | 7.4:-17523460 | MS.gene39049:CDS |
| TGCCCATCTTCCCACCCTTG+GGG | 0.561884 | 7.4:+17517771 | None:intergenic |
| AAAAGATTTGATTGAGCACA+AGG | 0.561960 | 7.4:-17521192 | MS.gene39049:CDS |
| AAGAAAATCTTAAGGCGGAA+AGG | 0.562059 | 7.4:-17523184 | MS.gene39049:intron |
| GGACGAATTGCGTGCATCTG+AGG | 0.563169 | 7.4:-17516587 | MS.gene39049:intron |
| CAGAGGAAAATAGAGAATGC+TGG | 0.563247 | 7.4:-17517120 | MS.gene39049:CDS |
| TCGAAACACAGTTGTTGCTA+AGG | 0.564507 | 7.4:-17518188 | MS.gene39049:CDS |
| GGATGCTGTGAAGCGATACC+AGG | 0.564903 | 7.4:-17517648 | MS.gene39049:CDS |
| GAAAGAAAGAGACAGCTTGG+AGG | 0.566243 | 7.4:-17523411 | MS.gene39049:intron |
| TTCTGGGCTTGACTATATTG+TGG | 0.567134 | 7.4:-17519877 | MS.gene39049:CDS |
| TTAATGCAGTTACTCGGGAG+CGG | 0.567334 | 7.4:-17516017 | MS.gene39049:CDS |
| TCTCTATTTGAACCTTGTGA+CGG | 0.571119 | 7.4:+17516942 | None:intergenic |
| CAATTCCCTCTCAGCAGCAA+CGG | 0.571413 | 7.4:+17517715 | None:intergenic |
| ATTGTTGACTGATGAGGAGA+GGG | 0.573441 | 7.4:-17522552 | MS.gene39049:CDS |
| AGAAGCCGTTGCTGCTGAGA+GGG | 0.574982 | 7.4:-17517720 | MS.gene39049:CDS |
| GGGGTAGTAACCCCAAGGGT+GGG | 0.575069 | 7.4:-17517781 | MS.gene39049:CDS |
| CATGGACGCATGGGTGACCT+AGG | 0.575540 | 7.4:-17520634 | MS.gene39049:CDS |
| AGAAAAGCTACAGGTTACAT+TGG | 0.578614 | 7.4:-17516274 | MS.gene39049:CDS |
| TCAGAAACCTATTATTGTCA+AGG | 0.579319 | 7.4:+17524809 | None:intergenic |
| AAAGTTAAAGGAAATGTACC+AGG | 0.579516 | 7.4:-17515829 | MS.gene39049:intron |
| GGAGAAAGAAAGGTTAACTG+AGG | 0.579946 | 7.4:-17516867 | MS.gene39049:CDS |
| TGATATCAGATATCGGAAGA+AGG | 0.587831 | 7.4:-17516070 | MS.gene39049:intron |
| ATCTGGAACAATGAGTGGTG+GGG | 0.588929 | 7.4:-17517801 | MS.gene39049:CDS |
| TCTCTTAAAATGGAAAGAGA+AGG | 0.593950 | 7.4:-17523276 | MS.gene39049:CDS |
| AAGAAATCAAGGAGTTTGAG+AGG | 0.594358 | 7.4:-17522818 | MS.gene39049:CDS |
| CAACTATATGAAAAGACAAG+AGG | 0.594819 | 7.4:-17522998 | MS.gene39049:intron |
| TTAGATTCAGAGAAGAGTCA+GGG | 0.595974 | 7.4:-17520712 | MS.gene39049:CDS |
| AGAACTTAATGCAGTTACTC+GGG | 0.595991 | 7.4:-17516022 | MS.gene39049:CDS |
| TTATGTGAAAGACAGGACTA+AGG | 0.596589 | 7.4:-17514421 | MS.gene39049:CDS |
| ATTGAAGCTCTTATGAAAGA+GGG | 0.596857 | 7.4:-17522632 | MS.gene39049:CDS |
| GGACAAATAGAAGGGATACA+TGG | 0.597068 | 7.4:-17520652 | MS.gene39049:CDS |
| ATCCATTACATAAAGCGGTG+TGG | 0.597635 | 7.4:+17514585 | None:intergenic |
| TTTAGGTTTCAGAGCTTCAG+AGG | 0.598437 | 7.4:-17517137 | MS.gene39049:intron |
| TATGTATGACTGCAGGAAGA+TGG | 0.600880 | 7.4:-17524970 | MS.gene39049:intron |
| GAAGGGATACATGGACGCAT+GGG | 0.601275 | 7.4:-17520643 | MS.gene39049:CDS |
| TCTGGAACAATGAGTGGTGG+GGG | 0.601534 | 7.4:-17517800 | MS.gene39049:CDS |
| TCTAGAAAGCCTTCATCATG+AGG | 0.602664 | 7.4:+17524646 | None:intergenic |
| CCACAATTTGGATAGTGCTG+AGG | 0.603021 | 7.4:-17525852 | MS.gene39049:CDS |
| TACGCTGGCGAACAACGCGT+TGG | 0.605936 | 7.4:-17526182 | MS.gene39049:CDS |
| CTTATGAAACCAAAATCTCA+AGG | 0.608826 | 7.4:-17524670 | MS.gene39049:CDS |
| GGCTAAGCTTCTAAGTGAGA+AGG | 0.608920 | 7.4:-17521144 | MS.gene39049:intron |
| CCTCAGCACTATCCAAATTG+TGG | 0.610119 | 7.4:+17525852 | None:intergenic |
| ACAAAGAATTGGAAATAAAG+GGG | 0.610292 | 7.4:-17516454 | MS.gene39049:CDS |
| CTAGATGATTGACAAACACC+GGG | 0.610825 | 7.4:-17516659 | MS.gene39049:intron |
| CGGAACTTCAAATCTTACGC+TGG | 0.612204 | 7.4:-17526197 | MS.gene39049:CDS |
| TGTTGCTAAGGATCTGGACC+AGG | 0.614674 | 7.4:-17518176 | MS.gene39049:intron |
| TGGGCTTGACTATATTGTGG+TGG | 0.614719 | 7.4:-17519874 | MS.gene39049:CDS |
| AAGAGTGTAAGCACTCCAGA+GGG | 0.615160 | 7.4:-17518280 | MS.gene39049:CDS |
| AGGAAACCGGACAAATAGAA+GGG | 0.620330 | 7.4:-17520660 | MS.gene39049:CDS |
| AAATCTGGAACAATGAGTGG+TGG | 0.621887 | 7.4:-17517803 | MS.gene39049:CDS |
| GAGATTAATAGACTTGCTGA+CGG | 0.624261 | 7.4:-17517354 | MS.gene39049:CDS |
| AATTGTTGACTGATGAGGAG+AGG | 0.624463 | 7.4:-17522553 | MS.gene39049:CDS |
| CTAGCTGTTGATGATACAGG+TGG | 0.625963 | 7.4:-17523245 | MS.gene39049:CDS |
| CTCAGAGATTAACCGTCACA+AGG | 0.626843 | 7.4:-17516954 | MS.gene39049:CDS |
| TGAACAAGATGCTAGACAGA+AGG | 0.631428 | 7.4:-17520755 | MS.gene39049:CDS |
| TAATATGATACCAAAACTCG+AGG | 0.633160 | 7.4:-17522597 | MS.gene39049:CDS |
| ACTTACCATCAATGGCACCT+AGG | 0.641403 | 7.4:+17520617 | None:intergenic |
| CCTAGAAGAAAATCTTAAGG+CGG | 0.646188 | 7.4:-17523189 | MS.gene39049:CDS |
| AATATTGCTAACTTATCCGG+TGG | 0.647047 | 7.4:-17514788 | MS.gene39049:CDS |
| TGGCAAACGACAAAACTGGA+CGG | 0.650265 | 7.4:+17514202 | None:intergenic |
| TGTTTGCAGATGATTACACT+CGG | 0.655105 | 7.4:-17514902 | MS.gene39049:intron |
| GAGTGTAAGCACTCCAGAGG+GGG | 0.656730 | 7.4:-17518278 | MS.gene39049:CDS |
| GCAACACGCATAGCATATGG+TGG | 0.659363 | 7.4:-17517875 | MS.gene39049:CDS |
| GCTGGCTAAAAGCCAGAAGG+AGG | 0.660136 | 7.4:-17517591 | MS.gene39049:intron |
| GCTTGACGTTGCATCTAGTG+AGG | 0.660861 | 7.4:-17521165 | MS.gene39049:CDS |
| GGAGCTGGCTAAAAGCCAGA+AGG | 0.671461 | 7.4:-17517594 | MS.gene39049:CDS |
| TCTAATTGAGAGAAGATCTG+GGG | 0.672633 | 7.4:-17523459 | MS.gene39049:CDS |
| TGTGAAGCGATACCAGGTCG+CGG | 0.672656 | 7.4:-17517642 | MS.gene39049:CDS |
| AAAATGGATGAGTTACAAGT+GGG | 0.673335 | 7.4:-17523221 | MS.gene39049:CDS |
| AAAGAGTGTAAGCACTCCAG+AGG | 0.677800 | 7.4:-17518281 | MS.gene39049:CDS |
| TCATCAAAGAGATGGTGATG+CGG | 0.678761 | 7.4:-17526217 | MS.gene39049:CDS |
| AAAGATTTGATTGAGCACAA+GGG | 0.679087 | 7.4:-17521191 | MS.gene39049:CDS |
| AATTGAGAGAAGATCTGGGG+TGG | 0.681873 | 7.4:-17523456 | MS.gene39049:CDS |
| ACAAGGTTCAAATAGAGACA+GGG | 0.690452 | 7.4:-17516937 | MS.gene39049:CDS |
| TCTGCGAAGTAACTCAACAC+AGG | 0.700567 | 7.4:+17519830 | None:intergenic |
| AGCATTGGAAGCTCACAGAG+TGG | 0.704040 | 7.4:-17520896 | MS.gene39049:CDS |
| AGGAAAATAGAGAATGCTGG+AGG | 0.709259 | 7.4:-17517117 | MS.gene39049:CDS |
| TTGATGAAAAGCCTAGATGG+TGG | 0.721645 | 7.4:+17526233 | None:intergenic |
| GAATTACAAGAATACACGAG+AGG | 0.730553 | 7.4:-17516783 | MS.gene39049:intron |
| GAAATTTAACAAGCTCAGAG+CGG | 0.731245 | 7.4:+17521237 | None:intergenic |
| TTGCAGATGATTACACTCGG+AGG | 0.735139 | 7.4:-17514899 | MS.gene39049:intron |
| AGAGTGTAAGCACTCCAGAG+GGG | 0.746694 | 7.4:-17518279 | MS.gene39049:CDS |
| AGGAGCTAGATAATGATACG+AGG | 0.761248 | 7.4:-17522851 | MS.gene39049:CDS |
| GTTAATAGAAGTACCCAGAG+CGG | 0.768533 | 7.4:+17514552 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 17514189 | 17526267 | 17514189 | ID=MS.gene39049 |
| chr7.4 | mRNA | 17514189 | 17526267 | 17514189 | ID=MS.gene39049.t1;Parent=MS.gene39049 |
| chr7.4 | exon | 17526169 | 17526267 | 17526169 | ID=MS.gene39049.t1.exon1;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17526169 | 17526267 | 17526169 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17526001 | 17526090 | 17526001 | ID=MS.gene39049.t1.exon2;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17526001 | 17526090 | 17526001 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17525820 | 17525921 | 17525820 | ID=MS.gene39049.t1.exon3;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17525820 | 17525921 | 17525820 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17524801 | 17524977 | 17524801 | ID=MS.gene39049.t1.exon4;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17524801 | 17524977 | 17524801 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17524583 | 17524713 | 17524583 | ID=MS.gene39049.t1.exon5;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17524583 | 17524713 | 17524583 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17523412 | 17523490 | 17523412 | ID=MS.gene39049.t1.exon6;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17523412 | 17523490 | 17523412 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17523185 | 17523342 | 17523185 | ID=MS.gene39049.t1.exon7;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17523185 | 17523342 | 17523185 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17522999 | 17523074 | 17522999 | ID=MS.gene39049.t1.exon8;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17522999 | 17523074 | 17522999 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17522743 | 17522871 | 17522743 | ID=MS.gene39049.t1.exon9;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17522743 | 17522871 | 17522743 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17522522 | 17522666 | 17522522 | ID=MS.gene39049.t1.exon10;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17522522 | 17522666 | 17522522 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17521145 | 17521275 | 17521145 | ID=MS.gene39049.t1.exon11;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17521145 | 17521275 | 17521145 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17520891 | 17521043 | 17520891 | ID=MS.gene39049.t1.exon12;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17520891 | 17521043 | 17520891 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17520623 | 17520812 | 17520623 | ID=MS.gene39049.t1.exon13;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17520623 | 17520812 | 17520623 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17519797 | 17519930 | 17519797 | ID=MS.gene39049.t1.exon14;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17519797 | 17519930 | 17519797 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17518177 | 17518335 | 17518177 | ID=MS.gene39049.t1.exon15;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17518177 | 17518335 | 17518177 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17517592 | 17517897 | 17517592 | ID=MS.gene39049.t1.exon16;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17517592 | 17517897 | 17517592 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17517332 | 17517508 | 17517332 | ID=MS.gene39049.t1.exon17;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17517332 | 17517508 | 17517332 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17517071 | 17517154 | 17517071 | ID=MS.gene39049.t1.exon18;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17517071 | 17517154 | 17517071 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17516784 | 17516993 | 17516784 | ID=MS.gene39049.t1.exon19;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17516784 | 17516993 | 17516784 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17516588 | 17516677 | 17516588 | ID=MS.gene39049.t1.exon20;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17516588 | 17516677 | 17516588 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17516395 | 17516516 | 17516395 | ID=MS.gene39049.t1.exon21;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17516395 | 17516516 | 17516395 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17516165 | 17516320 | 17516165 | ID=MS.gene39049.t1.exon22;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17516165 | 17516320 | 17516165 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17515976 | 17516083 | 17515976 | ID=MS.gene39049.t1.exon23;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17515976 | 17516083 | 17515976 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17515830 | 17515890 | 17515830 | ID=MS.gene39049.t1.exon24;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17515830 | 17515890 | 17515830 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17514781 | 17514915 | 17514781 | ID=MS.gene39049.t1.exon25;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17514781 | 17514915 | 17514781 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17514566 | 17514653 | 17514566 | ID=MS.gene39049.t1.exon26;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17514566 | 17514653 | 17514566 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17514399 | 17514471 | 17514399 | ID=MS.gene39049.t1.exon27;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17514399 | 17514471 | 17514399 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| chr7.4 | exon | 17514189 | 17514309 | 17514189 | ID=MS.gene39049.t1.exon28;Parent=MS.gene39049.t1 |
| chr7.4 | CDS | 17514189 | 17514309 | 17514189 | ID=cds.MS.gene39049.t1;Parent=MS.gene39049.t1 |
| Gene Sequence |
| Protein sequence |
