AlfalfaGEDB | MS.gene40684

M. sativa cultivar XinJiangDaYe / MS.gene40684

KEGG: K07399
GO: -
PFAM: PF05140.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40684.t1	XP_013456369.1	95.3	550	23	3	1	549	1	548	1.00E-297	1031.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40684.t1	Q9XIA4	67.0	536	170	2	12	540	5	540	3.6e-206	719.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40684.t1	A0A072UX27	95.3	550	23	3	1	549	1	548	7.5e-298	1031.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050426	MS.gene40684	-0.815978	7.01E-52	-1.69E-46
MS.gene050529	MS.gene40684	0.801901	7.24E-49	-1.69E-46
MS.gene050812	MS.gene40684	0.835022	2.14E-56	-1.69E-46
MS.gene051171	MS.gene40684	0.81154	6.65E-51	-1.69E-46
MS.gene051208	MS.gene40684	0.803459	3.45E-49	-1.69E-46
MS.gene051242	MS.gene40684	0.816334	5.83E-52	-1.69E-46
MS.gene051244	MS.gene40684	0.812267	4.62E-51	-1.69E-46
MS.gene051525	MS.gene40684	0.854844	9.39E-62	-1.69E-46
MS.gene051582	MS.gene40684	0.867775	1.07E-65	-1.69E-46
MS.gene052011	MS.gene40684	-0.831341	1.76E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40684.t1	MTR_4g069080	96.364	550	17	3	1	549	1	548	0.0	1084

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40684.t1	AT1G49380	67.279	544	167	4	12	545	5	547	0.0	755

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Find 129 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCAGGTTTCTCGCCT+TGG	0.423189	4.1:-33345315	None:intergenic
AACACAACTCCCACTCATCA+AGG	0.543840	4.1:+33345489	MS.gene40684:CDS
AACATTTCTCCAATAGCCAA+AGG	0.619561	4.1:-33344124	None:intergenic
AACGACCCTTTAAGATATGA+TGG	0.540927	4.1:+33346391	MS.gene40684:CDS
AACTTCTTGACCACACCAAA+AGG	0.469051	4.1:-33344067	None:intergenic
AAGAACCAGAAAGGTCCTTT+TGG	0.413428	4.1:+33344052	MS.gene40684:CDS
AAGATATGGGCCTTACAAGA+TGG	0.553885	4.1:+33347732	MS.gene40684:intron
AAGCTCCCAATCAACATTGA+CGG	0.512647	4.1:+33347246	MS.gene40684:CDS
AATAAGGGATGCACCAAGAA+GGG	0.561371	4.1:-33345452	None:intergenic
AATACATGTGATCAAAACCA+AGG	0.672461	4.1:-33345402	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGACCAAGACATGTT+TGG	-	chr4.1:33345209-33345228	None:intergenic	30.0%
AAATAGTCAAGTGTGAATCA+TGG	-	chr4.1:33345736-33345755	None:intergenic	30.0%
AATACATGTGATCAAAACCA+AGG	-	chr4.1:33345405-33345424	None:intergenic	30.0%
ACACAACTAATTGCATCTAA+AGG	-	chr4.1:33347354-33347373	None:intergenic	30.0%
ACTTACATTCCTTTAACATC+AGG	-	chr4.1:33346568-33346587	None:intergenic	30.0%
AGATGTCGGTACTATATTAA+TGG	+	chr4.1:33345682-33345701	MS.gene40684:CDS	30.0%
AGTTCTGTTGAATTTGAACA+AGG	-	chr4.1:33343864-33343883	None:intergenic	30.0%
ATCAAGGTTTCAAAAAGGTT+TGG	+	chr4.1:33345505-33345524	MS.gene40684:intron	30.0%
ATTGTCCTTTATGATAAGGA+AGG	+	chr4.1:33347192-33347211	MS.gene40684:CDS	30.0%
ATTTCCCTTCCTTATCATAA+AGG	-	chr4.1:33347200-33347219	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	33343791	33347893	33343791	ID=MS.gene40684
chr4.1	mRNA	33343791	33347893	33343791	ID=MS.gene40684.t1;Parent=MS.gene40684
chr4.1	exon	33343791	33344172	33343791	ID=MS.gene40684.t1.exon1;Parent=MS.gene40684.t1
chr4.1	CDS	33343791	33344172	33343791	ID=cds.MS.gene40684.t1;Parent=MS.gene40684.t1
chr4.1	exon	33345302	33345521	33345302	ID=MS.gene40684.t1.exon2;Parent=MS.gene40684.t1
chr4.1	CDS	33345302	33345521	33345302	ID=cds.MS.gene40684.t1;Parent=MS.gene40684.t1
chr4.1	exon	33345607	33345718	33345607	ID=MS.gene40684.t1.exon3;Parent=MS.gene40684.t1
chr4.1	CDS	33345607	33345718	33345607	ID=cds.MS.gene40684.t1;Parent=MS.gene40684.t1
chr4.1	exon	33345876	33346148	33345876	ID=MS.gene40684.t1.exon4;Parent=MS.gene40684.t1
chr4.1	CDS	33345876	33346148	33345876	ID=cds.MS.gene40684.t1;Parent=MS.gene40684.t1
chr4.1	exon	33346316	33346581	33346316	ID=MS.gene40684.t1.exon5;Parent=MS.gene40684.t1
chr4.1	CDS	33346316	33346581	33346316	ID=cds.MS.gene40684.t1;Parent=MS.gene40684.t1
chr4.1	exon	33347164	33347320	33347164	ID=MS.gene40684.t1.exon6;Parent=MS.gene40684.t1
chr4.1	CDS	33347164	33347320	33347164	ID=cds.MS.gene40684.t1;Parent=MS.gene40684.t1
chr4.1	exon	33347417	33347500	33347417	ID=MS.gene40684.t1.exon7;Parent=MS.gene40684.t1
chr4.1	CDS	33347417	33347500	33347417	ID=cds.MS.gene40684.t1;Parent=MS.gene40684.t1
chr4.1	exon	33347735	33347893	33347735	ID=MS.gene40684.t1.exon8;Parent=MS.gene40684.t1
chr4.1	CDS	33347735	33347893	33347735	ID=cds.MS.gene40684.t1;Parent=MS.gene40684.t1

Gene Sequence

>MS.gene40684

ATGTGTCACATGATGATGTCTTTGAGGACTCCTATGAATCAATGTCTTCTCAAAGTTCCCACTTTTCATCCCTTGTTCAAATTCAACAGAACTCATACTCATCATAACACCCTCTCATTCACCATCAACTGCTGCAACCTCAAAAACAAGGGAAAGAATAATAACTTGTTGTCACAGAAGATTGTCTTATCAGAATCTTCTCCTCCACCACTCACACAGGAGAATGATGATATCAACAGTGGAAATGTTCCAGCAAGCTCAAAGAACCAGAAAGGTCCTTTTGGTGTGGTCAAGAAGTTGAGTAAAAAGGTGTTGCAGATTCTCTCTAATTTGCCTTTGGCTATTGGAGAAATGTTCACCATTGCTTTTTTAATGGGGTTGGGTATGTGCTTAAACTTTTCTTCTTTTCTCTACTTTTTGAGTATGAATTATTATTAAGTTGTTTTTCACCCTATTTAGTTCTTAAAATTTTACATAGGAATGTTTGAATTGATTCATTTGAGCTTATCTACTCACCTATTTGAGAGAGTTTATGAAAACAACTTAAGACTTGTTCAAACCCATTTGGGGTTGGCCTAGTGGTTGGCTTGGAATCTTGGAGTTTGCTCCTCCATAGGTCTCAAGTTCGATTCCCTCTGGTGCCAATTTCGGTGGGCTAAGTCCATACAGAGCTTGCTCTGGCTTTAAACGGGCCCCCCGCAAGTGGGCGGTGGGATTGGTCCCCTCGGATTAGTCGATTCTTGGATTGGATACAACATATGAAAACAACTTATAACTTAGATGAAAACTCAATTTGACTTTATTTTATCCTTTGATATGGAGATAACATAGGCACTTAATTAAGTTATTTATCAAAACAGGCCATAGTACTTTTGTTATTTAGAAGATAGATTTTGATGTAAATGCCCCTCAAGATTGTGAATTGTGGGTGAACTTTAAAATATTATGGCTAAAGAGATGTTATTTCAATTTTTGTGTCTGTAAATTTGCTTTAATAAAAGGGTCTTGCTAACAAGTGCCCTAAGGGCATTGTTTAAGGAACCCAAAAAAAGAAACTATGTCTTGAAAATACAAGTCAAACACTTTTTAAAGTCATAACCGTACAATTTCCAATGCAAAAATTGCTACTTTTAGATGCTTAAACAATGCCCTTAGGGCAGTTGTTAGCATTTTCCTTAATAAAACCATAAGATAAGTATATGTTTGCTTCTACGGTGGCAAATTTGATTTTGATTAAATTGATTTTAGGTAAAAGTGTGTTTACCGTAACATAATTTATTTTTGAATATTTTCACGTGAAAGTGAGGTGAACAATAAATTTGAGTCTAAAAATCACGATCGAAGGCAACAATTACAAACTTTAGCTTCAAGTTAGAATCAATTCTTGAGCAAAAATTAATTATACTCAAGAACCACCAAACATGTCTTGGTCATTTTTAACTCCTCAAAATCAATTTTAGCTCTCCCAAAAGCTAACGTAAATATGCACTAAAGAAAAATTTCTATGGCAGGCACTTTTATTGACCAAGGCGAGAAACCTGAGTTTTATTTCCAGAATTACCCCGAAGATCATCCTGTGTTAGGATTTTTTACTTGGAGATGGATTTTCTTCCTTGGTTTTGATCACATGTATTCAGCTCCTATATTTCTTGCAATGTTGGCCCTTCTTGGTGCATCCCTTATTGCCTGCACTTACACAACACAACTCCCACTCATCAAGGTTTCAAAAAGGTTTGGTTTGGTTGTCAGTTTTGTGTGTTCATAATGCTTGGTTTGCGACATTTCTTGATCACTGAGGGCCTTATTTGTTTCGTAGATGGTCATTTATGCACTCTGCCGAGGTTATACGTAAGCAAGAGTTTTCAGAATCATTGCCAAGAGCATCAATCCAAGATGTCGGTACTATATTAATGGGAGCTGGATATGAGGTTATAATGCTATGCCATGATTCACACTTGACTATTTTGTTGTAGAAATAGTTTATACACAATCACTTATATGATAAGCGCTTATTTGTAGTTACTGACCAACAATAGACTTGAATATTTTTTGTGCGCGCTAACAAAATGTAAATTTGGATTATAGGTATTTTTGAAAGGACCAACTTTGTATGCTTTTCGCGGACTTGCCGGTCGGCTAGCTCCTGTTGGCGTTCATATAGCACTGCTGTTGATAATGGGTGGAGGAACTTTAAGTGCTGCAGGGAGCTTTAAAGGTTCAGTCACTGTGCCTCAGGGGCTGAATTTTGTTGTAGGAGACGTTCTCGGTCCTACCGGCTTTCTTTCCTTTCCAACTGATGCTTTTAATACAGAGATTCATGTCAACAGATTCTCTATGGATTATTATGAAAGTGGGGAGGTAAATGTTGGTTTTTGTTTTATATGAAATTGGAGTATTGATACTTGCAATTGAATTCAAGAAATTACCACCAGAATAAGTCAAAGTGTATTTAATTTTCTGCAATTTTGACAGTCTTATTGTTTTGCTATTTTGTTGTAAAATTTGGTTTTCGATTTTTGTTACAGGTTTCACAGTTTCACACCGATCTTTCCCTCTTGAACATGGATGGAAAAGAAGTAATGAGGAAAACAATTAGTGTAAACGACCCTTTAAGATATGATGGTATCACCATATACCAGACGGATTGGAGTATTTCAGCTCTGCAAATTCTCAAGGACAATGAAGGACCTTATAACTTGGCTATGGCACCTCTAAAGATCAATGGAGATAAGAAACTTTATGGTACTTTTCTACCGGTTGGAGATGTTAACTCTCCTGATGTTAAAGGAATGTAAGTGTATATATTCACTGTCACACTAAAATATTTGTTTCAATATTTGGAAGCTTTGGAAACTGTTCATAAGAGCATTTCCTCAATGAATTTTAGTTTGTATTTGGGGTGACATAAACAACTTATTTGTACTTATCTACTAACAAACACTTGTGAGTGTTTACGAAAGCTTGTGGAAACAACTTATGAAATGTCTATAAACTTTTTTACAACAGCTTATGAAAAGAGATAATAACTTATACATATGCACTTGTATTGTGAATGCTTATCGATTAAGAACTTAATTAAGTTGTTCGTTTAAACGAGTCTTTAGTGTATGATTGGGGGAGAACAATCAGATAATTGAAGTAGTTAGGATCAGAGTTTAAGACTTAGATAATTGTAATAGTTTGAGGTTCCAATAAAAGAAAAAGATTTTTGTTTTATTATTAGCATATTCTTAAAATTATGTATATAAGATTAAATTACAAATTAAGTGCAAAGGACCACCATTACAGACTAGGACTTGATATGTCATTCTGGCATATACACATTGATATTCTGCTTGTCTCATTCTTTTTACTAACTTTTATCGAATTTTAGATCTATGCTTGCTCGTGACCTGCAGTCAATTGTCCTTTATGATAAGGAAGGGAAATTTGCAGGAGTTAGACGACCTAATTCAAAGCTCCCAATCAACATTGACGGCTCAGAAATTGTCGTTGTGGATGCAATAGGCAGTAGTGGCTTGGACTTGAAGGTGTGAGCTTAAGCCAAGTCTGGTTATTTTCCTTTAGATGCAATTAGTTGTGTTACCTTTGTCACTGACCTATTGCTTAATGCTTATGTTATGCAGACTGATCCTGGCGTGCCAGTTGTATATGCTGGATTTGGTGCTCTCATGCTCACTACTTGCATCAGCTATTTATCTCATTCACAGGTGAATCTCTACATTTACATTAACACTAAGTATATGAAATTATCATTTGCATATTTGTTTGTATCATTCTTTTTCCAATTTTGCTTTCATTTATAGATTTTCCAGACAAATGTCATATGCATAATTAGACGATTCCTAAAAATGAGCAAATAACACTGGTAGCTTAGTTGTGTTTTCATTATCCATGTTTAATTATATATTAAAATGTGAATTTAATTTTTGGTAAATTGAAAGATATGGGCCTTACAAGATGGAACAACAGTCGTTATTGGAGGGAAGACTAACAGAGCTAAGTTAGAGTTTCCGGACGAGATGAACCTCTTGCTTGACAAAATCCCTGAAATAGTTGAATCATCATCTCTATCTAAGCAAACTGATAGCATGGTTAGCTAG

Protein sequence

>MS.gene40684.t1

MCHMMMSLRTPMNQCLLKVPTFHPLFKFNRTHTHHNTLSFTINCCNLKNKGKNNNLLSQKIVLSESSPPPLTQENDDINSGNVPASSKNQKGPFGVVKKLSKKVLQILSNLPLAIGEMFTIAFLMGLGTFIDQGEKPEFYFQNYPEDHPVLGFFTWRWIFFLGFDHMYSAPIFLAMLALLGASLIACTYTTQLPLIKVSKRWSFMHSAEVIRKQEFSESLPRASIQDVGTILMGAGYEVFLKGPTLYAFRGLAGRLAPVGVHIALLLIMGGGTLSAAGSFKGSVTVPQGLNFVVGDVLGPTGFLSFPTDAFNTEIHVNRFSMDYYESGEVSQFHTDLSLLNMDGKEVMRKTISVNDPLRYDGITIYQTDWSISALQILKDNEGPYNLAMAPLKINGDKKLYGTFLPVGDVNSPDVKGISMLARDLQSIVLYDKEGKFAGVRRPNSKLPINIDGSEIVVVDAIGSSGLDLKTDPGVPVVYAGFGALMLTTCISYLSHSQIWALQDGTTVVIGGKTNRAKLEFPDEMNLLLDKIPEIVESSSLSKQTDSMVS