Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40684.t1 | XP_013456369.1 | 95.3 | 550 | 23 | 3 | 1 | 549 | 1 | 548 | 1.00E-297 | 1031.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40684.t1 | Q9XIA4 | 67.0 | 536 | 170 | 2 | 12 | 540 | 5 | 540 | 3.6e-206 | 719.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40684.t1 | A0A072UX27 | 95.3 | 550 | 23 | 3 | 1 | 549 | 1 | 548 | 7.5e-298 | 1031.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050426 | MS.gene40684 | -0.815978 | 7.01E-52 | -1.69E-46 |
| MS.gene050529 | MS.gene40684 | 0.801901 | 7.24E-49 | -1.69E-46 |
| MS.gene050812 | MS.gene40684 | 0.835022 | 2.14E-56 | -1.69E-46 |
| MS.gene051171 | MS.gene40684 | 0.81154 | 6.65E-51 | -1.69E-46 |
| MS.gene051208 | MS.gene40684 | 0.803459 | 3.45E-49 | -1.69E-46 |
| MS.gene051242 | MS.gene40684 | 0.816334 | 5.83E-52 | -1.69E-46 |
| MS.gene051244 | MS.gene40684 | 0.812267 | 4.62E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene40684 | 0.854844 | 9.39E-62 | -1.69E-46 |
| MS.gene051582 | MS.gene40684 | 0.867775 | 1.07E-65 | -1.69E-46 |
| MS.gene052011 | MS.gene40684 | -0.831341 | 1.76E-55 | -1.69E-46 |
| MS.gene052134 | MS.gene40684 | 0.812702 | 3.71E-51 | -1.69E-46 |
| MS.gene052135 | MS.gene40684 | 0.806074 | 9.81E-50 | -1.69E-46 |
| MS.gene052481 | MS.gene40684 | 0.812833 | 3.48E-51 | -1.69E-46 |
| MS.gene053107 | MS.gene40684 | 0.827348 | 1.64E-54 | -1.69E-46 |
| MS.gene053330 | MS.gene40684 | 0.854891 | 9.10E-62 | -1.69E-46 |
| MS.gene053971 | MS.gene40684 | 0.858309 | 9.00E-63 | -1.69E-46 |
| MS.gene054719 | MS.gene40684 | 0.844708 | 6.39E-59 | -1.69E-46 |
| MS.gene055370 | MS.gene40684 | 0.827449 | 1.56E-54 | -1.69E-46 |
| MS.gene05553 | MS.gene40684 | 0.814712 | 1.34E-51 | -1.69E-46 |
| MS.gene055971 | MS.gene40684 | 0.819447 | 1.16E-52 | -1.69E-46 |
| MS.gene056451 | MS.gene40684 | 0.815874 | 7.39E-52 | -1.69E-46 |
| MS.gene056633 | MS.gene40684 | 0.851828 | 6.88E-61 | -1.69E-46 |
| MS.gene056723 | MS.gene40684 | 0.816996 | 4.15E-52 | -1.69E-46 |
| MS.gene056796 | MS.gene40684 | 0.803423 | 3.51E-49 | -1.69E-46 |
| MS.gene057196 | MS.gene40684 | 0.818285 | 2.12E-52 | -1.69E-46 |
| MS.gene057332 | MS.gene40684 | 0.800128 | 1.67E-48 | -1.69E-46 |
| MS.gene058233 | MS.gene40684 | 0.851698 | 7.49E-61 | -1.69E-46 |
| MS.gene058276 | MS.gene40684 | 0.816272 | 6.02E-52 | -1.69E-46 |
| MS.gene058444 | MS.gene40684 | 0.814159 | 1.78E-51 | -1.69E-46 |
| MS.gene058746 | MS.gene40684 | 0.857794 | 1.28E-62 | -1.69E-46 |
| MS.gene059420 | MS.gene40684 | 0.80176 | 7.73E-49 | -1.69E-46 |
| MS.gene059512 | MS.gene40684 | 0.820863 | 5.48E-53 | -1.69E-46 |
| MS.gene059683 | MS.gene40684 | 0.819827 | 9.47E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40684.t1 | MTR_4g069080 | 96.364 | 550 | 17 | 3 | 1 | 549 | 1 | 548 | 0.0 | 1084 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40684.t1 | AT1G49380 | 67.279 | 544 | 167 | 4 | 12 | 545 | 5 | 547 | 0.0 | 755 |
Find 129 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCAATGTTGGCCCTTCT+TGG | 0.176283 | 4.1:+33345439 | MS.gene40684:CDS |
| CCACACCAAAAGGACCTTTC+TGG | 0.201813 | 4.1:-33344057 | None:intergenic |
| GATGATGATTCAACTATTTC+AGG | 0.215636 | 4.1:-33347837 | None:intergenic |
| TCTAATTTGCCTTTGGCTAT+TGG | 0.216573 | 4.1:+33344115 | MS.gene40684:CDS |
| CAGAGCTAAGTTAGAGTTTC+CGG | 0.217680 | 4.1:+33347785 | MS.gene40684:CDS |
| AGTGCTGCAGGGAGCTTTAA+AGG | 0.217791 | 4.1:+33345984 | MS.gene40684:CDS |
| TTCTGGTTCTTTGAGCTTGC+TGG | 0.229099 | 4.1:-33344040 | None:intergenic |
| AATGGAGATAAGAAACTTTA+TGG | 0.238655 | 4.1:+33346511 | MS.gene40684:CDS |
| GTTAACTCTCCTGATGTTAA+AGG | 0.262581 | 4.1:+33346556 | MS.gene40684:CDS |
| GATGATCTTCGGGGTAATTC+TGG | 0.271782 | 4.1:-33345342 | None:intergenic |
| TTATCTCCATTGATCTTTAG+AGG | 0.290427 | 4.1:-33346499 | None:intergenic |
| GTGATACCATCATATCTTAA+AGG | 0.306162 | 4.1:-33346397 | None:intergenic |
| ATTTCCCTTCCTTATCATAA+AGG | 0.309945 | 4.1:-33347197 | None:intergenic |
| ACTCCAATCCGTCTGGTATA+TGG | 0.313882 | 4.1:-33346419 | None:intergenic |
| CACTCATCAAGGTTTCAAAA+AGG | 0.314179 | 4.1:+33345500 | MS.gene40684:CDS |
| TTGAGAAGACATTGATTCAT+AGG | 0.322099 | 4.1:-33343821 | None:intergenic |
| AGATGTCGGTACTATATTAA+TGG | 0.328637 | 4.1:+33345682 | MS.gene40684:CDS |
| GATTCTCTCTAATTTGCCTT+TGG | 0.333030 | 4.1:+33344108 | MS.gene40684:CDS |
| TCATGTCAACAGATTCTCTA+TGG | 0.335451 | 4.1:+33346106 | MS.gene40684:CDS |
| GATGGAACAACAGTCGTTAT+TGG | 0.338022 | 4.1:+33347750 | MS.gene40684:CDS |
| GATAAGGAAGGGAAATTTGC+AGG | 0.341411 | 4.1:+33347204 | MS.gene40684:CDS |
| TATAGCACTGCTGTTGATAA+TGG | 0.346092 | 4.1:+33345947 | MS.gene40684:CDS |
| CCTAACACAGGATGATCTTC+GGG | 0.348301 | 4.1:-33345352 | None:intergenic |
| TTGATTGGGAGCTTTGAATT+AGG | 0.356379 | 4.1:-33347237 | None:intergenic |
| TCCTATATTTCTTGCAATGT+TGG | 0.358616 | 4.1:+33345429 | MS.gene40684:CDS |
| TTGTGTAAGTGCAGGCAATA+AGG | 0.379774 | 4.1:-33345468 | None:intergenic |
| GTCAATTGTCCTTTATGATA+AGG | 0.380317 | 4.1:+33347188 | MS.gene40684:CDS |
| AGGTTCAGTCACTGTGCCTC+AGG | 0.385654 | 4.1:+33346004 | MS.gene40684:CDS |
| CCCGAAGATCATCCTGTGTT+AGG | 0.385736 | 4.1:+33345352 | MS.gene40684:CDS |
| TCTGAGCCGTCAATGTTGAT+TGG | 0.394000 | 4.1:-33347252 | None:intergenic |
| CTGAGCCGTCAATGTTGATT+GGG | 0.396472 | 4.1:-33347251 | None:intergenic |
| GGTCAAGAAGTTGAGTAAAA+AGG | 0.404743 | 4.1:+33344078 | MS.gene40684:CDS |
| GATGTCGGTACTATATTAAT+GGG | 0.410352 | 4.1:+33345683 | MS.gene40684:CDS |
| AAGAACCAGAAAGGTCCTTT+TGG | 0.413428 | 4.1:+33344052 | MS.gene40684:CDS |
| CAGTAGTGGCTTGGACTTGA+AGG | 0.414087 | 4.1:+33347299 | MS.gene40684:CDS |
| TTAATATAGTACCGACATCT+TGG | 0.419377 | 4.1:-33345679 | None:intergenic |
| TTTGAGGTTGCAGCAGTTGA+TGG | 0.421183 | 4.1:-33343912 | None:intergenic |
| TCCTAACACAGGATGATCTT+CGG | 0.422726 | 4.1:-33345353 | None:intergenic |
| AAAACTCAGGTTTCTCGCCT+TGG | 0.423189 | 4.1:-33345315 | None:intergenic |
| GGTGCCATAGCCAAGTTATA+AGG | 0.424092 | 4.1:-33346478 | None:intergenic |
| GACTGTTGTTCCATCTTGTA+AGG | 0.430467 | 4.1:-33347742 | None:intergenic |
| TGATACCATCATATCTTAAA+GGG | 0.444057 | 4.1:-33346396 | None:intergenic |
| CCAGTTGTATATGCTGGATT+TGG | 0.446587 | 4.1:+33347432 | MS.gene40684:CDS |
| ATTGTCGTTGTGGATGCAAT+AGG | 0.449874 | 4.1:+33347276 | MS.gene40684:CDS |
| GCCAACATTGCAAGAAATAT+AGG | 0.450820 | 4.1:-33345430 | None:intergenic |
| AACTTCTTGACCACACCAAA+AGG | 0.469051 | 4.1:-33344067 | None:intergenic |
| AGCAAGAGGTTCATCTCGTC+CGG | 0.469158 | 4.1:-33347804 | None:intergenic |
| TGCAATAGGCAGTAGTGGCT+TGG | 0.469467 | 4.1:+33347290 | MS.gene40684:CDS |
| GGAGGAACTTTAAGTGCTGC+AGG | 0.471844 | 4.1:+33345972 | MS.gene40684:CDS |
| ACTTACATTCCTTTAACATC+AGG | 0.476122 | 4.1:-33346565 | None:intergenic |
| TCTATGGATTATTATGAAAG+TGG | 0.477182 | 4.1:+33346122 | MS.gene40684:CDS |
| GTCACATGATGATGTCTTTG+AGG | 0.479643 | 4.1:+33343795 | MS.gene40684:CDS |
| CGATCTTTCCCTCTTGAACA+TGG | 0.481054 | 4.1:+33346333 | MS.gene40684:CDS |
| CTTTCCCTCTTGAACATGGA+TGG | 0.481191 | 4.1:+33346337 | MS.gene40684:CDS |
| TTTGAACAAGGGATGAAAAG+TGG | 0.482240 | 4.1:-33343849 | None:intergenic |
| ATGATGATTCAACTATTTCA+GGG | 0.487321 | 4.1:-33347836 | None:intergenic |
| AGTGCTATATGAACGCCAAC+AGG | 0.487373 | 4.1:-33345933 | None:intergenic |
| TTCTCCTGTGTGAGTGGTGG+AGG | 0.491970 | 4.1:-33343992 | None:intergenic |
| ACATCTTGGATTGATGCTCT+TGG | 0.492453 | 4.1:-33345665 | None:intergenic |
| CCAAATCCAGCATATACAAC+TGG | 0.494043 | 4.1:-33347432 | None:intergenic |
| CTGAAATACTCCAATCCGTC+TGG | 0.496597 | 4.1:-33346426 | None:intergenic |
| TATGTTATGCAGACTGATCC+TGG | 0.497099 | 4.1:+33347405 | MS.gene40684:intron |
| GCATATACAACTGGCACGCC+AGG | 0.499803 | 4.1:-33347423 | None:intergenic |
| CAGCTATTTATCTCATTCAC+AGG | 0.500481 | 4.1:+33347479 | MS.gene40684:CDS |
| TCTGTATTAAAAGCATCAGT+TGG | 0.502693 | 4.1:-33346080 | None:intergenic |
| CAATGAAGGACCTTATAACT+TGG | 0.502844 | 4.1:+33346468 | MS.gene40684:CDS |
| TTTGTTGTAGGAGACGTTCT+CGG | 0.507703 | 4.1:+33346035 | MS.gene40684:CDS |
| ATAGCACTGCTGTTGATAAT+GGG | 0.512040 | 4.1:+33345948 | MS.gene40684:CDS |
| AAGCTCCCAATCAACATTGA+CGG | 0.512647 | 4.1:+33347246 | MS.gene40684:CDS |
| ATTAATGGGAGCTGGATATG+AGG | 0.517838 | 4.1:+33345697 | MS.gene40684:CDS |
| CTATGGATTATTATGAAAGT+GGG | 0.518677 | 4.1:+33346123 | MS.gene40684:CDS |
| GGCGTGCCAGTTGTATATGC+TGG | 0.520966 | 4.1:+33347426 | MS.gene40684:CDS |
| ATTGTCCTTTATGATAAGGA+AGG | 0.526577 | 4.1:+33347192 | MS.gene40684:CDS |
| CAAATTCTCAAGGACAATGA+AGG | 0.527947 | 4.1:+33346454 | MS.gene40684:CDS |
| ATGGCACCTCTAAAGATCAA+TGG | 0.528038 | 4.1:+33346493 | MS.gene40684:CDS |
| CAATAAGGGATGCACCAAGA+AGG | 0.534856 | 4.1:-33345453 | None:intergenic |
| GGTACTATATTAATGGGAGC+TGG | 0.536365 | 4.1:+33345689 | MS.gene40684:CDS |
| TCACCATATACCAGACGGAT+TGG | 0.537124 | 4.1:+33346416 | MS.gene40684:CDS |
| TTCAGCTCTGCAAATTCTCA+AGG | 0.537400 | 4.1:+33346444 | MS.gene40684:CDS |
| AACGACCCTTTAAGATATGA+TGG | 0.540927 | 4.1:+33346391 | MS.gene40684:CDS |
| AACACAACTCCCACTCATCA+AGG | 0.543840 | 4.1:+33345489 | MS.gene40684:CDS |
| GGTTCAGTCACTGTGCCTCA+GGG | 0.545272 | 4.1:+33346005 | MS.gene40684:CDS |
| GCCGGTCGGCTAGCTCCTGT+TGG | 0.547932 | 4.1:+33345918 | MS.gene40684:CDS |
| AAGATATGGGCCTTACAAGA+TGG | 0.553885 | 4.1:+33347732 | MS.gene40684:intron |
| CCGCGAAAAGCATACAAAGT+TGG | 0.554026 | 4.1:-33345891 | None:intergenic |
| GTCATTTATGCACTCTGCCG+AGG | 0.555645 | 4.1:+33345610 | MS.gene40684:CDS |
| TTGAACAAGGGATGAAAAGT+GGG | 0.557949 | 4.1:-33343848 | None:intergenic |
| ATTAAAAGCATCAGTTGGAA+AGG | 0.559039 | 4.1:-33346075 | None:intergenic |
| ATCTAAGCAAACTGATAGCA+TGG | 0.559854 | 4.1:+33347863 | MS.gene40684:CDS |
| AATAAGGGATGCACCAAGAA+GGG | 0.561371 | 4.1:-33345452 | None:intergenic |
| GGAGAGTTAACATCTCCAAC+CGG | 0.566287 | 4.1:-33346544 | None:intergenic |
| TGTGTAAGTGCAGGCAATAA+GGG | 0.570286 | 4.1:-33345467 | None:intergenic |
| GCCAACAGGAGCTAGCCGAC+CGG | 0.571087 | 4.1:-33345919 | None:intergenic |
| CATAAAGGACAATTGACTGC+AGG | 0.571577 | 4.1:-33347182 | None:intergenic |
| CATGTTCAAGAGGGAAAGAT+CGG | 0.573438 | 4.1:-33346332 | None:intergenic |
| TTGTCCTTTATGATAAGGAA+GGG | 0.575204 | 4.1:+33347193 | MS.gene40684:CDS |
| GGAGACGTTCTCGGTCCTAC+CGG | 0.575828 | 4.1:+33346044 | MS.gene40684:CDS |
| GCAAGCTCAAAGAACCAGAA+AGG | 0.582871 | 4.1:+33344043 | MS.gene40684:CDS |
| AGTTCTGTTGAATTTGAACA+AGG | 0.583852 | 4.1:-33343861 | None:intergenic |
| TGGATGGAAAAGAAGTAATG+AGG | 0.584497 | 4.1:+33346353 | MS.gene40684:CDS |
| GGAACAACAGTCGTTATTGG+AGG | 0.585525 | 4.1:+33347753 | MS.gene40684:CDS |
| TCATCATTCTCCTGTGTGAG+TGG | 0.588845 | 4.1:-33343998 | None:intergenic |
| TCATTCTCCTGTGTGAGTGG+TGG | 0.589165 | 4.1:-33343995 | None:intergenic |
| TTCTCCTCCACCACTCACAC+AGG | 0.595333 | 4.1:+33343988 | MS.gene40684:CDS |
| CTCTTGCTTACGTATAACCT+CGG | 0.597641 | 4.1:-33345627 | None:intergenic |
| GTGGATGCAATAGGCAGTAG+TGG | 0.602202 | 4.1:+33347285 | MS.gene40684:CDS |
| TAATTCTGGAAATAAAACTC+AGG | 0.612309 | 4.1:-33345328 | None:intergenic |
| CGGCTCAGAAATTGTCGTTG+TGG | 0.613524 | 4.1:+33347266 | MS.gene40684:CDS |
| AGTTGGAAAGGAAAGAAAGC+CGG | 0.613737 | 4.1:-33346063 | None:intergenic |
| AGGACCTTATAACTTGGCTA+TGG | 0.614764 | 4.1:+33346474 | MS.gene40684:CDS |
| AACATTTCTCCAATAGCCAA+AGG | 0.619561 | 4.1:-33344124 | None:intergenic |
| GAGTTGTGTTGTGTAAGTGC+AGG | 0.638222 | 4.1:-33345476 | None:intergenic |
| GTTCAGTCACTGTGCCTCAG+GGG | 0.641281 | 4.1:+33346006 | MS.gene40684:CDS |
| GAACAACAGTCGTTATTGGA+GGG | 0.642119 | 4.1:+33347754 | MS.gene40684:CDS |
| AGAGCATCAATCCAAGATGT+CGG | 0.650072 | 4.1:+33345668 | MS.gene40684:CDS |
| GAGAATGATGATATCAACAG+TGG | 0.661987 | 4.1:+33344010 | MS.gene40684:CDS |
| CTGCTGTTGATAATGGGTGG+AGG | 0.663763 | 4.1:+33345954 | MS.gene40684:CDS |
| TATGGATTATTATGAAAGTG+GGG | 0.664635 | 4.1:+33346124 | MS.gene40684:CDS |
| AGCAGTTGATGGTGAATGAG+AGG | 0.669144 | 4.1:-33343901 | None:intergenic |
| GAGGAACTTTAAGTGCTGCA+GGG | 0.669763 | 4.1:+33345973 | MS.gene40684:CDS |
| AATACATGTGATCAAAACCA+AGG | 0.672461 | 4.1:-33345402 | None:intergenic |
| TGGTATCACCATATACCAGA+CGG | 0.679132 | 4.1:+33346411 | MS.gene40684:CDS |
| GTTCTGTTGAATTTGAACAA+GGG | 0.681172 | 4.1:-33343860 | None:intergenic |
| GCACTGCTGTTGATAATGGG+TGG | 0.691436 | 4.1:+33345951 | MS.gene40684:CDS |
| GGATTATTATGAAAGTGGGG+AGG | 0.692179 | 4.1:+33346127 | MS.gene40684:CDS |
| GCAGTTGATGGTGAATGAGA+GGG | 0.694383 | 4.1:-33343900 | None:intergenic |
| ACAACAAAATTCAGCCCCTG+AGG | 0.701712 | 4.1:-33346020 | None:intergenic |
| GGAAAGGAAAGAAAGCCGGT+AGG | 0.713048 | 4.1:-33346059 | None:intergenic |
| CTAACACAGGATGATCTTCG+GGG | 0.719698 | 4.1:-33345351 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATTTGTTTCAATATT+TGG | + | chr4.1:33346609-33346628 | MS.gene40684:intron | 10.0% |
| !! | TTCAAAAATAAATTATGTTA+CGG | - | chr4.1:33345057-33345076 | None:intergenic | 10.0% |
| !!! | AAAATTTTAAGAACTAAATA+GGG | - | chr4.1:33344243-33344262 | None:intergenic | 10.0% |
| !!! | ATTTTGATTAAATTGATTTT+AGG | + | chr4.1:33345017-33345036 | MS.gene40684:intron | 10.0% |
| !!! | TAAAATGTGAATTTAATTTT+TGG | + | chr4.1:33347701-33347720 | MS.gene40684:intron | 10.0% |
| !!! | TAAAATTTTAAGAACTAAAT+AGG | - | chr4.1:33344244-33344263 | None:intergenic | 10.0% |
| !! | AAAATGTAAATTTGGATTAT+AGG | + | chr4.1:33345854-33345873 | MS.gene40684:intron | 15.0% |
| !! | ATTAAGTTATTTATCAAAAC+AGG | + | chr4.1:33344629-33344648 | MS.gene40684:intron | 15.0% |
| !!! | AATGAATTTTAGTTTGTATT+TGG | + | chr4.1:33346666-33346685 | MS.gene40684:intron | 15.0% |
| !!! | ATGAATTTTAGTTTGTATTT+GGG | + | chr4.1:33346667-33346686 | MS.gene40684:intron | 15.0% |
| !!! | CAAAAATCTTTTTCTTTTAT+TGG | - | chr4.1:33346982-33347001 | None:intergenic | 15.0% |
| !!! | GTAAATTTGCTTTAATAAAA+GGG | + | chr4.1:33344771-33344790 | MS.gene40684:intron | 15.0% |
| !!! | GTTTTTGTTTTATATGAAAT+TGG | + | chr4.1:33346159-33346178 | MS.gene40684:intron | 15.0% |
| !!! | TAGTTCTTAAAATTTTACAT+AGG | + | chr4.1:33344247-33344266 | MS.gene40684:intron | 15.0% |
| !!! | TGTAAATTTGCTTTAATAAA+AGG | + | chr4.1:33344770-33344789 | MS.gene40684:intron | 15.0% |
| !! | AAAATATTCAAGTCTATTGT+TGG | - | chr4.1:33345820-33345839 | None:intergenic | 20.0% |
| !! | AAATTACAAATTAAGTGCAA+AGG | + | chr4.1:33347043-33347062 | MS.gene40684:intron | 20.0% |
| !! | ATACAAACTAAAATTCATTG+AGG | - | chr4.1:33346665-33346684 | None:intergenic | 20.0% |
| !! | TAGATAATTGTAATAGTTTG+AGG | + | chr4.1:33346954-33346973 | MS.gene40684:intron | 20.0% |
| !! | TCTATAAATGAAAGCAAAAT+TGG | - | chr4.1:33347578-33347597 | None:intergenic | 20.0% |
| !! | TTTGGTAAATTGAAAGATAT+GGG | + | chr4.1:33347719-33347738 | MS.gene40684:intron | 20.0% |
| !!! | AAGACATAGTTTCTTTTTTT+GGG | - | chr4.1:33344835-33344854 | None:intergenic | 20.0% |
| !!! | CTTATCTTATGGTTTTATTA+AGG | - | chr4.1:33344967-33344986 | None:intergenic | 20.0% |
| !!! | CTTTATTTTATCCTTTGATA+TGG | + | chr4.1:33344588-33344607 | MS.gene40684:intron | 20.0% |
| !!! | TCTAAATAACAAAAGTACTA+TGG | - | chr4.1:33344655-33344674 | None:intergenic | 20.0% |
| !!! | TGAATTTTAGTTTGTATTTG+GGG | + | chr4.1:33346668-33346687 | MS.gene40684:intron | 20.0% |
| !!! | TGCTATTTTGTTGTAAAATT+TGG | + | chr4.1:33346274-33346293 | MS.gene40684:intron | 20.0% |
| !!! | TTTTGGTAAATTGAAAGATA+TGG | + | chr4.1:33347718-33347737 | MS.gene40684:intron | 20.0% |
| ! | AATGGAGATAAGAAACTTTA+TGG | + | chr4.1:33346511-33346530 | MS.gene40684:CDS | 25.0% |
| ! | ATCAGATAATTGAAGTAGTT+AGG | + | chr4.1:33346915-33346934 | MS.gene40684:intron | 25.0% |
| ! | ATGATGATTCAACTATTTCA+GGG | - | chr4.1:33347839-33347858 | None:intergenic | 25.0% |
| ! | GCAAACATATACTTATCTTA+TGG | - | chr4.1:33344978-33344997 | None:intergenic | 25.0% |
| ! | GCACTAAAGAAAAATTTCTA+TGG | + | chr4.1:33345276-33345295 | MS.gene40684:intron | 25.0% |
| ! | TAAAAATGAGCAAATAACAC+TGG | + | chr4.1:33347637-33347656 | MS.gene40684:intron | 25.0% |
| ! | TAAAGAAAAATTTCTATGGC+AGG | + | chr4.1:33345280-33345299 | MS.gene40684:intron | 25.0% |
| ! | TAACATAAGCATTAAGCAAT+AGG | - | chr4.1:33347392-33347411 | None:intergenic | 25.0% |
| ! | TAAGTATATGTTTGCTTCTA+CGG | + | chr4.1:33344983-33345002 | MS.gene40684:intron | 25.0% |
| ! | TGATACCATCATATCTTAAA+GGG | - | chr4.1:33346399-33346418 | None:intergenic | 25.0% |
| ! | TTTCATAAACTCTCTCAAAT+AGG | - | chr4.1:33344309-33344328 | None:intergenic | 25.0% |
| !! | AAAAGTAGCAATTTTTGCAT+TGG | - | chr4.1:33344903-33344922 | None:intergenic | 25.0% |
| !! | AAATACACTTTGACTTATTC+TGG | - | chr4.1:33346222-33346241 | None:intergenic | 25.0% |
| !! | CTATGGATTATTATGAAAGT+GGG | + | chr4.1:33346123-33346142 | MS.gene40684:CDS | 25.0% |
| !! | TAATTCTGGAAATAAAACTC+AGG | - | chr4.1:33345331-33345350 | None:intergenic | 25.0% |
| !! | TATGGATTATTATGAAAGTG+GGG | + | chr4.1:33346124-33346143 | MS.gene40684:CDS | 25.0% |
| !! | TCTATGGATTATTATGAAAG+TGG | + | chr4.1:33346122-33346141 | MS.gene40684:CDS | 25.0% |
| !! | TTTTTGCATTGGAAATTGTA+CGG | - | chr4.1:33344892-33344911 | None:intergenic | 25.0% |
| !!! | AGTGTTATTTGCTCATTTTT+AGG | - | chr4.1:33347638-33347657 | None:intergenic | 25.0% |
| !!! | CAAGACATAGTTTCTTTTTT+TGG | - | chr4.1:33344836-33344855 | None:intergenic | 25.0% |
| !!! | GGATTATAGGTATTTTTGAA+AGG | + | chr4.1:33345867-33345886 | MS.gene40684:intron | 25.0% |
| !!! | GGGTGAACTTTAAAATATTA+TGG | + | chr4.1:33344717-33344736 | MS.gene40684:intron | 25.0% |
| !!! | TTCACCATTGCTTTTTTAAT+GGG | + | chr4.1:33344145-33344164 | MS.gene40684:CDS | 25.0% |
| AAAAATGACCAAGACATGTT+TGG | - | chr4.1:33345209-33345228 | None:intergenic | 30.0% | |
| AAATAGTCAAGTGTGAATCA+TGG | - | chr4.1:33345736-33345755 | None:intergenic | 30.0% | |
| AATACATGTGATCAAAACCA+AGG | - | chr4.1:33345405-33345424 | None:intergenic | 30.0% | |
| ACACAACTAATTGCATCTAA+AGG | - | chr4.1:33347354-33347373 | None:intergenic | 30.0% | |
| ACTTACATTCCTTTAACATC+AGG | - | chr4.1:33346568-33346587 | None:intergenic | 30.0% | |
| AGATGTCGGTACTATATTAA+TGG | + | chr4.1:33345682-33345701 | MS.gene40684:CDS | 30.0% | |
| AGTTCTGTTGAATTTGAACA+AGG | - | chr4.1:33343864-33343883 | None:intergenic | 30.0% | |
| ATCAAGGTTTCAAAAAGGTT+TGG | + | chr4.1:33345505-33345524 | MS.gene40684:intron | 30.0% | |
| ATTGTCCTTTATGATAAGGA+AGG | + | chr4.1:33347192-33347211 | MS.gene40684:CDS | 30.0% | |
| ATTTCCCTTCCTTATCATAA+AGG | - | chr4.1:33347200-33347219 | None:intergenic | 30.0% | |
| CAAGTAAAAAATCCTAACAC+AGG | - | chr4.1:33345367-33345386 | None:intergenic | 30.0% | |
| CTATGTTATCTCCATATCAA+AGG | - | chr4.1:33344602-33344621 | None:intergenic | 30.0% | |
| CTTTGATATGGAGATAACAT+AGG | + | chr4.1:33344600-33344619 | MS.gene40684:intron | 30.0% | |
| GATGATGATTCAACTATTTC+AGG | - | chr4.1:33347840-33347859 | None:intergenic | 30.0% | |
| GATGTCGGTACTATATTAAT+GGG | + | chr4.1:33345683-33345702 | MS.gene40684:CDS | 30.0% | |
| GCGCTAACAAAATGTAAATT+TGG | + | chr4.1:33345846-33345865 | MS.gene40684:intron | 30.0% | |
| GTCAATTGTCCTTTATGATA+AGG | + | chr4.1:33347188-33347207 | MS.gene40684:CDS | 30.0% | |
| GTGATACCATCATATCTTAA+AGG | - | chr4.1:33346400-33346419 | None:intergenic | 30.0% | |
| GTTCTGTTGAATTTGAACAA+GGG | - | chr4.1:33343863-33343882 | None:intergenic | 30.0% | |
| GTTTCAATATTTGGAAGCTT+TGG | + | chr4.1:33346618-33346637 | MS.gene40684:intron | 30.0% | |
| TAAAGGAAAATAACCAGACT+TGG | - | chr4.1:33347337-33347356 | None:intergenic | 30.0% | |
| TCCTATATTTCTTGCAATGT+TGG | + | chr4.1:33345429-33345448 | MS.gene40684:CDS | 30.0% | |
| TTATCTCCATTGATCTTTAG+AGG | - | chr4.1:33346502-33346521 | None:intergenic | 30.0% | |
| TTATGCATATGACATTTGTC+TGG | - | chr4.1:33347605-33347624 | None:intergenic | 30.0% | |
| TTGTCCTTTATGATAAGGAA+GGG | + | chr4.1:33347193-33347212 | MS.gene40684:CDS | 30.0% | |
| ! | AATATTTTCACGTGAAAGTG+AGG | + | chr4.1:33345075-33345094 | MS.gene40684:intron | 30.0% |
| ! | ACTTTATGGTACTTTTCTAC+CGG | + | chr4.1:33346525-33346544 | MS.gene40684:CDS | 30.0% |
| ! | TGGTTTTCGATTTTTGTTAC+AGG | + | chr4.1:33346294-33346313 | MS.gene40684:intron | 30.0% |
| ! | TTTTGTGTGTTCATAATGCT+TGG | + | chr4.1:33345540-33345559 | MS.gene40684:intron | 30.0% |
| !! | ATTAAAAGCATCAGTTGGAA+AGG | - | chr4.1:33346078-33346097 | None:intergenic | 30.0% |
| !! | GAGAGCTAAAATTGATTTTG+AGG | - | chr4.1:33345236-33345255 | None:intergenic | 30.0% |
| !! | TCTGTATTAAAAGCATCAGT+TGG | - | chr4.1:33346083-33346102 | None:intergenic | 30.0% |
| !! | TTAATATAGTACCGACATCT+TGG | - | chr4.1:33345682-33345701 | None:intergenic | 30.0% |
| !! | TTGAGAAGACATTGATTCAT+AGG | - | chr4.1:33343824-33343843 | None:intergenic | 30.0% |
| !!! | ATTGCTTTTTTAATGGGGTT+GGG | + | chr4.1:33344151-33344170 | MS.gene40684:CDS | 30.0% |
| !!! | CTGTGTTAGGATTTTTTACT+TGG | + | chr4.1:33345365-33345384 | MS.gene40684:CDS | 30.0% |
| !!! | GCATATTTACGTTAGCTTTT+GGG | - | chr4.1:33345258-33345277 | None:intergenic | 30.0% |
| !!! | GTTCACCATTGCTTTTTTAA+TGG | + | chr4.1:33344144-33344163 | MS.gene40684:CDS | 30.0% |
| !!! | TAGGATTTTTTACTTGGAGA+TGG | + | chr4.1:33345371-33345390 | MS.gene40684:CDS | 30.0% |
| !!! | TATTCTTTCCCTTGTTTTTG+AGG | - | chr4.1:33343931-33343950 | None:intergenic | 30.0% |
| !!! | TCACCATTGCTTTTTTAATG+GGG | + | chr4.1:33344146-33344165 | MS.gene40684:CDS | 30.0% |
| !!! | TGCATATTTACGTTAGCTTT+TGG | - | chr4.1:33345259-33345278 | None:intergenic | 30.0% |
| !!! | TTTTTGAAACCTTGATGAGT+GGG | - | chr4.1:33345501-33345520 | None:intergenic | 30.0% |
| AACATTTCTCCAATAGCCAA+AGG | - | chr4.1:33344127-33344146 | None:intergenic | 35.0% | |
| ACGAGTCTTTAGTGTATGAT+TGG | + | chr4.1:33346883-33346902 | MS.gene40684:intron | 35.0% | |
| AGTCTAAAAATCACGATCGA+AGG | + | chr4.1:33345113-33345132 | MS.gene40684:intron | 35.0% | |
| AGTCTTTAGTGTATGATTGG+GGG | + | chr4.1:33346886-33346905 | MS.gene40684:intron | 35.0% | |
| ATCTAAGCAAACTGATAGCA+TGG | + | chr4.1:33347863-33347882 | MS.gene40684:CDS | 35.0% | |
| ATGCTTAAACAATGCCCTTA+GGG | + | chr4.1:33344925-33344944 | MS.gene40684:intron | 35.0% | |
| CAAATTCTCAAGGACAATGA+AGG | + | chr4.1:33346454-33346473 | MS.gene40684:CDS | 35.0% | |
| CAACCCCATTAAAAAAGCAA+TGG | - | chr4.1:33344152-33344171 | None:intergenic | 35.0% | |
| CAATGAAGGACCTTATAACT+TGG | + | chr4.1:33346468-33346487 | MS.gene40684:CDS | 35.0% | |
| CACTCATCAAGGTTTCAAAA+AGG | + | chr4.1:33345500-33345519 | MS.gene40684:CDS | 35.0% | |
| CAGCTATTTATCTCATTCAC+AGG | + | chr4.1:33347479-33347498 | MS.gene40684:CDS | 35.0% | |
| CGAGTCTTTAGTGTATGATT+GGG | + | chr4.1:33346884-33346903 | MS.gene40684:intron | 35.0% | |
| GACCATCTACGAAACAAATA+AGG | - | chr4.1:33345593-33345612 | None:intergenic | 35.0% | |
| GAGAATGATGATATCAACAG+TGG | + | chr4.1:33344010-33344029 | MS.gene40684:CDS | 35.0% | |
| GAGTCTTTAGTGTATGATTG+GGG | + | chr4.1:33346885-33346904 | MS.gene40684:intron | 35.0% | |
| GCCAACATTGCAAGAAATAT+AGG | - | chr4.1:33345433-33345452 | None:intergenic | 35.0% | |
| GGTCAAGAAGTTGAGTAAAA+AGG | + | chr4.1:33344078-33344097 | MS.gene40684:CDS | 35.0% | |
| GTTAACTCTCCTGATGTTAA+AGG | + | chr4.1:33346556-33346575 | MS.gene40684:CDS | 35.0% | |
| TAGGACTTGATATGTCATTC+TGG | + | chr4.1:33347081-33347100 | MS.gene40684:intron | 35.0% | |
| TATCAAGTCCTAGTCTGTAA+TGG | - | chr4.1:33347073-33347092 | None:intergenic | 35.0% | |
| TCATGTCAACAGATTCTCTA+TGG | + | chr4.1:33346106-33346125 | MS.gene40684:CDS | 35.0% | |
| TGGATGGAAAAGAAGTAATG+AGG | + | chr4.1:33346353-33346372 | MS.gene40684:CDS | 35.0% | |
| TTCCTTAAACAATGCCCTTA+GGG | - | chr4.1:33344812-33344831 | None:intergenic | 35.0% | |
| TTGAACAAGGGATGAAAAGT+GGG | - | chr4.1:33343851-33343870 | None:intergenic | 35.0% | |
| TTTGAACAAGGGATGAAAAG+TGG | - | chr4.1:33343852-33343871 | None:intergenic | 35.0% | |
| ! | AAGACTTGTTCAAACCCATT+TGG | + | chr4.1:33344336-33344355 | MS.gene40684:intron | 35.0% |
| ! | AGACTTGTTCAAACCCATTT+GGG | + | chr4.1:33344337-33344356 | MS.gene40684:intron | 35.0% |
| ! | GATTCTCTCTAATTTGCCTT+TGG | + | chr4.1:33344108-33344127 | MS.gene40684:CDS | 35.0% |
| ! | GGTTTCAAAAAGGTTTGGTT+TGG | + | chr4.1:33345510-33345529 | MS.gene40684:intron | 35.0% |
| ! | TACACTTTGACTTATTCTGG+TGG | - | chr4.1:33346219-33346238 | None:intergenic | 35.0% |
| ! | TATAGCACTGCTGTTGATAA+TGG | + | chr4.1:33345947-33345966 | MS.gene40684:CDS | 35.0% |
| ! | TCTAATTTGCCTTTGGCTAT+TGG | + | chr4.1:33344115-33344134 | MS.gene40684:CDS | 35.0% |
| ! | TTTTCCATCCATGTTCAAGA+GGG | - | chr4.1:33346344-33346363 | None:intergenic | 35.0% |
| !! | AACGACCCTTTAAGATATGA+TGG | + | chr4.1:33346391-33346410 | MS.gene40684:CDS | 35.0% |
| !! | ATAGCACTGCTGTTGATAAT+GGG | + | chr4.1:33345948-33345967 | MS.gene40684:CDS | 35.0% |
| !! | TTGATTGGGAGCTTTGAATT+AGG | - | chr4.1:33347240-33347259 | None:intergenic | 35.0% |
| !!! | CATTGCTTTTTTAATGGGGT+TGG | + | chr4.1:33344150-33344169 | MS.gene40684:CDS | 35.0% |
| !!! | CTTTTTGAAACCTTGATGAG+TGG | - | chr4.1:33345502-33345521 | None:intergenic | 35.0% |
| AAATGCTAACAACTGCCCTA+AGG | - | chr4.1:33344943-33344962 | None:intergenic | 40.0% | |
| AACTTCTTGACCACACCAAA+AGG | - | chr4.1:33344070-33344089 | None:intergenic | 40.0% | |
| AAGAACCACCAAACATGTCT+TGG | + | chr4.1:33345198-33345217 | MS.gene40684:intron | 40.0% | |
| AAGATATGGGCCTTACAAGA+TGG | + | chr4.1:33347732-33347751 | MS.gene40684:intron | 40.0% | |
| AAGCAATAGGTCAGTGACAA+AGG | - | chr4.1:33347379-33347398 | None:intergenic | 40.0% | |
| AAGCTCCCAATCAACATTGA+CGG | + | chr4.1:33347246-33347265 | MS.gene40684:CDS | 40.0% | |
| AATAAGGGATGCACCAAGAA+GGG | - | chr4.1:33345455-33345474 | None:intergenic | 40.0% | |
| AATGACCAAGACATGTTTGG+TGG | - | chr4.1:33345206-33345225 | None:intergenic | 40.0% | |
| AATGCTAACAACTGCCCTAA+GGG | - | chr4.1:33344942-33344961 | None:intergenic | 40.0% | |
| ACATCTTGGATTGATGCTCT+TGG | - | chr4.1:33345668-33345687 | None:intergenic | 40.0% | |
| ACCCACAATTCACAATCTTG+AGG | - | chr4.1:33344701-33344720 | None:intergenic | 40.0% | |
| AGGACCTTATAACTTGGCTA+TGG | + | chr4.1:33346474-33346493 | MS.gene40684:CDS | 40.0% | |
| AGTTGGAAAGGAAAGAAAGC+CGG | - | chr4.1:33346066-33346085 | None:intergenic | 40.0% | |
| ATTAATGGGAGCTGGATATG+AGG | + | chr4.1:33345697-33345716 | MS.gene40684:CDS | 40.0% | |
| ATTGTCGTTGTGGATGCAAT+AGG | + | chr4.1:33347276-33347295 | MS.gene40684:CDS | 40.0% | |
| CATAAAGGACAATTGACTGC+AGG | - | chr4.1:33347185-33347204 | None:intergenic | 40.0% | |
| CATGTTCAAGAGGGAAAGAT+CGG | - | chr4.1:33346335-33346354 | None:intergenic | 40.0% | |
| CCAAATCCAGCATATACAAC+TGG | - | chr4.1:33347435-33347454 | None:intergenic | 40.0% | |
| CCACAATTCACAATCTTGAG+GGG | - | chr4.1:33344699-33344718 | None:intergenic | 40.0% | |
| CCAGTTGTATATGCTGGATT+TGG | + | chr4.1:33347432-33347451 | MS.gene40684:CDS | 40.0% | |
| CCCACAATTCACAATCTTGA+GGG | - | chr4.1:33344700-33344719 | None:intergenic | 40.0% | |
| CCCTCAAGATTGTGAATTGT+GGG | + | chr4.1:33344697-33344716 | MS.gene40684:intron | 40.0% | |
| CGACATTTCTTGATCACTGA+GGG | + | chr4.1:33345567-33345586 | MS.gene40684:intron | 40.0% | |
| CTCTTGCTTACGTATAACCT+CGG | - | chr4.1:33345630-33345649 | None:intergenic | 40.0% | |
| GAACAACAGTCGTTATTGGA+GGG | + | chr4.1:33347754-33347773 | MS.gene40684:CDS | 40.0% | |
| GACTGTTGTTCCATCTTGTA+AGG | - | chr4.1:33347745-33347764 | None:intergenic | 40.0% | |
| GATAAGGAAGGGAAATTTGC+AGG | + | chr4.1:33347204-33347223 | MS.gene40684:CDS | 40.0% | |
| GATGCTTAAACAATGCCCTT+AGG | + | chr4.1:33344924-33344943 | MS.gene40684:intron | 40.0% | |
| GATGGAACAACAGTCGTTAT+TGG | + | chr4.1:33347750-33347769 | MS.gene40684:CDS | 40.0% | |
| GGATTATTATGAAAGTGGGG+AGG | + | chr4.1:33346127-33346146 | MS.gene40684:CDS | 40.0% | |
| GGTACTATATTAATGGGAGC+TGG | + | chr4.1:33345689-33345708 | MS.gene40684:CDS | 40.0% | |
| GTATATGTTTGCTTCTACGG+TGG | + | chr4.1:33344986-33345005 | MS.gene40684:intron | 40.0% | |
| GTTCCTTAAACAATGCCCTT+AGG | - | chr4.1:33344813-33344832 | None:intergenic | 40.0% | |
| TATGTTATGCAGACTGATCC+TGG | + | chr4.1:33347405-33347424 | MS.gene40684:intron | 40.0% | |
| TCCTAACACAGGATGATCTT+CGG | - | chr4.1:33345356-33345375 | None:intergenic | 40.0% | |
| TGAGTGTTTACGAAAGCTTG+TGG | + | chr4.1:33346735-33346754 | MS.gene40684:intron | 40.0% | |
| TGCTGCAACCTCAAAAACAA+GGG | + | chr4.1:33343920-33343939 | MS.gene40684:CDS | 40.0% | |
| TGGTATCACCATATACCAGA+CGG | + | chr4.1:33346411-33346430 | MS.gene40684:CDS | 40.0% | |
| TGTGTAAGTGCAGGCAATAA+GGG | - | chr4.1:33345470-33345489 | None:intergenic | 40.0% | |
| TTCAGCTCTGCAAATTCTCA+AGG | + | chr4.1:33346444-33346463 | MS.gene40684:CDS | 40.0% | |
| TTGTGTAAGTGCAGGCAATA+AGG | - | chr4.1:33345471-33345490 | None:intergenic | 40.0% | |
| ! | AAGAACCAGAAAGGTCCTTT+TGG | + | chr4.1:33344052-33344071 | MS.gene40684:CDS | 40.0% |
| ! | AGAGCATCAATCCAAGATGT+CGG | + | chr4.1:33345668-33345687 | MS.gene40684:CDS | 40.0% |
| ! | ATGGCACCTCTAAAGATCAA+TGG | + | chr4.1:33346493-33346512 | MS.gene40684:CDS | 40.0% |
| ! | CCAACTTTGTATGCTTTTCG+CGG | + | chr4.1:33345891-33345910 | MS.gene40684:CDS | 40.0% |
| ! | CTTTTCCATCCATGTTCAAG+AGG | - | chr4.1:33346345-33346364 | None:intergenic | 40.0% |
| ! | GACTTGTTCAAACCCATTTG+GGG | + | chr4.1:33344338-33344357 | MS.gene40684:intron | 40.0% |
| ! | GTCACATGATGATGTCTTTG+AGG | + | chr4.1:33343795-33343814 | MS.gene40684:CDS | 40.0% |
| ! | TATGGTACTTTTCTACCGGT+TGG | + | chr4.1:33346529-33346548 | MS.gene40684:CDS | 40.0% |
| ! | TTTGTTGTAGGAGACGTTCT+CGG | + | chr4.1:33346035-33346054 | MS.gene40684:CDS | 40.0% |
| !! | GGATTAGTCGATTCTTGGAT+TGG | + | chr4.1:33344517-33344536 | MS.gene40684:intron | 40.0% |
| !! | GGCCTTATTTGTTTCGTAGA+TGG | + | chr4.1:33345588-33345607 | MS.gene40684:intron | 40.0% |
| !! | TGGAGATGGATTTTCTTCCT+TGG | + | chr4.1:33345385-33345404 | MS.gene40684:CDS | 40.0% |
| AAAACTCAGGTTTCTCGCCT+TGG | - | chr4.1:33345318-33345337 | None:intergenic | 45.0% | |
| AACACAACTCCCACTCATCA+AGG | + | chr4.1:33345489-33345508 | MS.gene40684:CDS | 45.0% | |
| AAGATTCCAAGCCAACCACT+AGG | - | chr4.1:33344368-33344387 | None:intergenic | 45.0% | |
| AAGGACCACCATTACAGACT+AGG | + | chr4.1:33347062-33347081 | MS.gene40684:intron | 45.0% | |
| ACAACAAAATTCAGCCCCTG+AGG | - | chr4.1:33346023-33346042 | None:intergenic | 45.0% | |
| ACTCCAATCCGTCTGGTATA+TGG | - | chr4.1:33346422-33346441 | None:intergenic | 45.0% | |
| AGTGCTATATGAACGCCAAC+AGG | - | chr4.1:33345936-33345955 | None:intergenic | 45.0% | |
| ATCGAACTTGAGACCTATGG+AGG | - | chr4.1:33344401-33344420 | None:intergenic | 45.0% | |
| CAAGAATCGACTAATCCGAG+GGG | - | chr4.1:33344514-33344533 | None:intergenic | 45.0% | |
| CAAGTCCTAGTCTGTAATGG+TGG | - | chr4.1:33347070-33347089 | None:intergenic | 45.0% | |
| CAATAAGGGATGCACCAAGA+AGG | - | chr4.1:33345456-33345475 | None:intergenic | 45.0% | |
| CCAAGAATCGACTAATCCGA+GGG | - | chr4.1:33344515-33344534 | None:intergenic | 45.0% | |
| CCCCTCAAGATTGTGAATTG+TGG | + | chr4.1:33344696-33344715 | MS.gene40684:intron | 45.0% | |
| CCTAACACAGGATGATCTTC+GGG | - | chr4.1:33345355-33345374 | None:intergenic | 45.0% | |
| CGATCTTTCCCTCTTGAACA+TGG | + | chr4.1:33346333-33346352 | MS.gene40684:CDS | 45.0% | |
| CTAACACAGGATGATCTTCG+GGG | - | chr4.1:33345354-33345373 | None:intergenic | 45.0% | |
| CTGAAATACTCCAATCCGTC+TGG | - | chr4.1:33346429-33346448 | None:intergenic | 45.0% | |
| CTGCTGCAACCTCAAAAACA+AGG | + | chr4.1:33343919-33343938 | MS.gene40684:CDS | 45.0% | |
| CTTGCTAACAAGTGCCCTAA+GGG | + | chr4.1:33344795-33344814 | MS.gene40684:intron | 45.0% | |
| CTTTCCCTCTTGAACATGGA+TGG | + | chr4.1:33346337-33346356 | MS.gene40684:CDS | 45.0% | |
| GAAAGTGGGGAGGTAAATGT+TGG | + | chr4.1:33346137-33346156 | MS.gene40684:intron | 45.0% | |
| GAGTTGTGTTGTGTAAGTGC+AGG | - | chr4.1:33345479-33345498 | None:intergenic | 45.0% | |
| GATGATCTTCGGGGTAATTC+TGG | - | chr4.1:33345345-33345364 | None:intergenic | 45.0% | |
| GCAAGCTCAAAGAACCAGAA+AGG | + | chr4.1:33344043-33344062 | MS.gene40684:CDS | 45.0% | |
| GCGACATTTCTTGATCACTG+AGG | + | chr4.1:33345566-33345585 | MS.gene40684:intron | 45.0% | |
| GGAACAACAGTCGTTATTGG+AGG | + | chr4.1:33347753-33347772 | MS.gene40684:CDS | 45.0% | |
| GGAATCGAACTTGAGACCTA+TGG | - | chr4.1:33344404-33344423 | None:intergenic | 45.0% | |
| GGAGAGTTAACATCTCCAAC+CGG | - | chr4.1:33346547-33346566 | None:intergenic | 45.0% | |
| TCACCATATACCAGACGGAT+TGG | + | chr4.1:33346416-33346435 | MS.gene40684:CDS | 45.0% | |
| TCATCATTCTCCTGTGTGAG+TGG | - | chr4.1:33344001-33344020 | None:intergenic | 45.0% | |
| TCCAAGAATCGACTAATCCG+AGG | - | chr4.1:33344516-33344535 | None:intergenic | 45.0% | |
| TCTGAGCCGTCAATGTTGAT+TGG | - | chr4.1:33347255-33347274 | None:intergenic | 45.0% | |
| TCTTGCTAACAAGTGCCCTA+AGG | + | chr4.1:33344794-33344813 | MS.gene40684:intron | 45.0% | |
| ! | ATTCCCTCTGGTGCCAATTT+CGG | + | chr4.1:33344419-33344438 | MS.gene40684:intron | 45.0% |
| ! | CAGGGATTTTGTCAAGCAAG+AGG | - | chr4.1:33347821-33347840 | None:intergenic | 45.0% |
| ! | CCGCGAAAAGCATACAAAGT+TGG | - | chr4.1:33345894-33345913 | None:intergenic | 45.0% |
| ! | CTGAGCCGTCAATGTTGATT+GGG | - | chr4.1:33347254-33347273 | None:intergenic | 45.0% |
| ! | GAGGAACTTTAAGTGCTGCA+GGG | + | chr4.1:33345973-33345992 | MS.gene40684:CDS | 45.0% |
| ! | GCAGGCACTTTTATTGACCA+AGG | + | chr4.1:33345298-33345317 | MS.gene40684:intron | 45.0% |
| ! | GGTGCCATAGCCAAGTTATA+AGG | - | chr4.1:33346481-33346500 | None:intergenic | 45.0% |
| ! | TGTTCAAACCCATTTGGGGT+TGG | + | chr4.1:33344342-33344361 | MS.gene40684:intron | 45.0% |
| ! | TTTGAGGTTGCAGCAGTTGA+TGG | - | chr4.1:33343915-33343934 | None:intergenic | 45.0% |
| !! | AGCAGTTGATGGTGAATGAG+AGG | - | chr4.1:33343904-33343923 | None:intergenic | 45.0% |
| !! | AGCTTGCTCTGGCTTTAAAC+GGG | + | chr4.1:33344460-33344479 | MS.gene40684:intron | 45.0% |
| !! | CAGGGGCTGAATTTTGTTGT+AGG | + | chr4.1:33346023-33346042 | MS.gene40684:CDS | 45.0% |
| !! | GAGCTTGCTCTGGCTTTAAA+CGG | + | chr4.1:33344459-33344478 | MS.gene40684:intron | 45.0% |
| !! | GCAGTTGATGGTGAATGAGA+GGG | - | chr4.1:33343903-33343922 | None:intergenic | 45.0% |
| !! | TAGTGGTTGGCTTGGAATCT+TGG | + | chr4.1:33344367-33344386 | MS.gene40684:intron | 45.0% |
| !! | TGCCCTAAGGGCATTGTTTA+AGG | + | chr4.1:33344807-33344826 | MS.gene40684:intron | 45.0% |
| !! | TTCTGGTTCTTTGAGCTTGC+TGG | - | chr4.1:33344043-33344062 | None:intergenic | 45.0% |
| !!! | TTTTAATATATAATTAAACA+TGG | - | chr4.1:33347686-33347705 | None:intergenic | 5.0% |
| AAGCCAGAGCAAGCTCTGTA+TGG | - | chr4.1:33344455-33344474 | None:intergenic | 50.0% | |
| AGCAAGAGGTTCATCTCGTC+CGG | - | chr4.1:33347807-33347826 | None:intergenic | 50.0% | |
| CCACACCAAAAGGACCTTTC+TGG | - | chr4.1:33344060-33344079 | None:intergenic | 50.0% | |
| CCCGAAGATCATCCTGTGTT+AGG | + | chr4.1:33345352-33345371 | MS.gene40684:CDS | 50.0% | |
| CGGCTCAGAAATTGTCGTTG+TGG | + | chr4.1:33347266-33347285 | MS.gene40684:CDS | 50.0% | |
| CTTGCAATGTTGGCCCTTCT+TGG | + | chr4.1:33345439-33345458 | MS.gene40684:CDS | 50.0% | |
| GGAAAGGAAAGAAAGCCGGT+AGG | - | chr4.1:33346062-33346081 | None:intergenic | 50.0% | |
| GTCATTTATGCACTCTGCCG+AGG | + | chr4.1:33345610-33345629 | MS.gene40684:CDS | 50.0% | |
| GTCTCAAGTTCGATTCCCTC+TGG | + | chr4.1:33344407-33344426 | MS.gene40684:intron | 50.0% | |
| GTGGATGCAATAGGCAGTAG+TGG | + | chr4.1:33347285-33347304 | MS.gene40684:CDS | 50.0% | |
| GTGTGAGCTTAAGCCAAGTC+TGG | + | chr4.1:33347321-33347340 | MS.gene40684:intron | 50.0% | |
| TCATTCTCCTGTGTGAGTGG+TGG | - | chr4.1:33343998-33344017 | None:intergenic | 50.0% | |
| TGCAATAGGCAGTAGTGGCT+TGG | + | chr4.1:33347290-33347309 | MS.gene40684:CDS | 50.0% | |
| TGGACTTAGCCCACCGAAAT+TGG | - | chr4.1:33344435-33344454 | None:intergenic | 50.0% | |
| ! | AGTCCATACAGAGCTTGCTC+TGG | + | chr4.1:33344449-33344468 | MS.gene40684:intron | 50.0% |
| ! | AGTGCTGCAGGGAGCTTTAA+AGG | + | chr4.1:33345984-33346003 | MS.gene40684:CDS | 50.0% |
| ! | CAGTAGTGGCTTGGACTTGA+AGG | + | chr4.1:33347299-33347318 | MS.gene40684:CDS | 50.0% |
| ! | CCAGAAAGGTCCTTTTGGTG+TGG | + | chr4.1:33344057-33344076 | MS.gene40684:CDS | 50.0% |
| ! | CTTGGAGTTTGCTCCTCCAT+AGG | + | chr4.1:33344385-33344404 | MS.gene40684:intron | 50.0% |
| ! | GGAGGAACTTTAAGTGCTGC+AGG | + | chr4.1:33345972-33345991 | MS.gene40684:CDS | 50.0% |
| ! | TATGCTTTTCGCGGACTTGC+CGG | + | chr4.1:33345900-33345919 | MS.gene40684:CDS | 50.0% |
| !! | CCCTCGGATTAGTCGATTCT+TGG | + | chr4.1:33344512-33344531 | MS.gene40684:intron | 50.0% |
| !! | CTGCTGTTGATAATGGGTGG+AGG | + | chr4.1:33345954-33345973 | MS.gene40684:CDS | 50.0% |
| !! | GCACTGCTGTTGATAATGGG+TGG | + | chr4.1:33345951-33345970 | MS.gene40684:CDS | 50.0% |
| ACCACTAGGCCAACCCCAAA+TGG | - | chr4.1:33344354-33344373 | None:intergenic | 55.0% | |
| AGGTTCAGTCACTGTGCCTC+AGG | + | chr4.1:33346004-33346023 | MS.gene40684:CDS | 55.0% | |
| CCACCGAAATTGGCACCAGA+GGG | - | chr4.1:33344425-33344444 | None:intergenic | 55.0% | |
| CCACTAGGCCAACCCCAAAT+GGG | - | chr4.1:33344353-33344372 | None:intergenic | 55.0% | |
| GCATATACAACTGGCACGCC+AGG | - | chr4.1:33347426-33347445 | None:intergenic | 55.0% | |
| GGCGTGCCAGTTGTATATGC+TGG | + | chr4.1:33347426-33347445 | MS.gene40684:CDS | 55.0% | |
| GGTTCAGTCACTGTGCCTCA+GGG | + | chr4.1:33346005-33346024 | MS.gene40684:CDS | 55.0% | |
| GTTCAGTCACTGTGCCTCAG+GGG | + | chr4.1:33346006-33346025 | MS.gene40684:CDS | 55.0% | |
| TTCTCCTCCACCACTCACAC+AGG | + | chr4.1:33343988-33344007 | MS.gene40684:CDS | 55.0% | |
| TTCTCCTGTGTGAGTGGTGG+AGG | - | chr4.1:33343995-33344014 | None:intergenic | 55.0% | |
| ! | CCTCTGGTGCCAATTTCGGT+GGG | + | chr4.1:33344423-33344442 | MS.gene40684:intron | 55.0% |
| !! | TTTGGGGTTGGCCTAGTGGT+TGG | + | chr4.1:33344354-33344373 | MS.gene40684:intron | 55.0% |
| CCCACCGAAATTGGCACCAG+AGG | - | chr4.1:33344426-33344445 | None:intergenic | 60.0% | |
| GGAGACGTTCTCGGTCCTAC+CGG | + | chr4.1:33346044-33346063 | MS.gene40684:CDS | 60.0% | |
| ! | CCCTCTGGTGCCAATTTCGG+TGG | + | chr4.1:33344422-33344441 | MS.gene40684:intron | 60.0% |
| ! | CTTTTCGCGGACTTGCCGGT+CGG | + | chr4.1:33345904-33345923 | MS.gene40684:CDS | 60.0% |
| !! | CCCATTTGGGGTTGGCCTAG+TGG | + | chr4.1:33344350-33344369 | MS.gene40684:intron | 60.0% |
| !! | GGTTGGCCTAGTGGTTGGCT+TGG | + | chr4.1:33344359-33344378 | MS.gene40684:intron | 60.0% |
| AATCCCACCGCCCACTTGCG+GGG | - | chr4.1:33344488-33344507 | None:intergenic | 65.0% | |
| CAATCCCACCGCCCACTTGC+GGG | - | chr4.1:33344489-33344508 | None:intergenic | 65.0% | |
| CCAATCCCACCGCCCACTTG+CGG | - | chr4.1:33344490-33344509 | None:intergenic | 65.0% | |
| GCCAACAGGAGCTAGCCGAC+CGG | - | chr4.1:33345922-33345941 | None:intergenic | 65.0% | |
| TAAACGGGCCCCCCGCAAGT+GGG | + | chr4.1:33344475-33344494 | MS.gene40684:intron | 65.0% | |
| TTAAACGGGCCCCCCGCAAG+TGG | + | chr4.1:33344474-33344493 | MS.gene40684:intron | 65.0% | |
| ATCCCACCGCCCACTTGCGG+GGG | - | chr4.1:33344487-33344506 | None:intergenic | 70.0% | |
| CCGCAAGTGGGCGGTGGGAT+TGG | + | chr4.1:33344487-33344506 | MS.gene40684:intron | 70.0% | |
| ! | GCCGGTCGGCTAGCTCCTGT+TGG | + | chr4.1:33345918-33345937 | MS.gene40684:CDS | 70.0% |
| !! | GGCGGTGGGATTGGTCCCCT+CGG | + | chr4.1:33344496-33344515 | MS.gene40684:intron | 70.0% |
| TCCCACCGCCCACTTGCGGG+GGG | - | chr4.1:33344486-33344505 | None:intergenic | 75.0% | |
| ! | ACGGGCCCCCCGCAAGTGGG+CGG | + | chr4.1:33344478-33344497 | MS.gene40684:intron | 80.0% |
| ! | GCCCCCCGCAAGTGGGCGGT+GGG | + | chr4.1:33344482-33344501 | MS.gene40684:intron | 80.0% |
| ! | GGCCCCCCGCAAGTGGGCGG+TGG | + | chr4.1:33344481-33344500 | MS.gene40684:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 33343791 | 33347893 | 33343791 | ID=MS.gene40684 |
| chr4.1 | mRNA | 33343791 | 33347893 | 33343791 | ID=MS.gene40684.t1;Parent=MS.gene40684 |
| chr4.1 | exon | 33343791 | 33344172 | 33343791 | ID=MS.gene40684.t1.exon1;Parent=MS.gene40684.t1 |
| chr4.1 | CDS | 33343791 | 33344172 | 33343791 | ID=cds.MS.gene40684.t1;Parent=MS.gene40684.t1 |
| chr4.1 | exon | 33345302 | 33345521 | 33345302 | ID=MS.gene40684.t1.exon2;Parent=MS.gene40684.t1 |
| chr4.1 | CDS | 33345302 | 33345521 | 33345302 | ID=cds.MS.gene40684.t1;Parent=MS.gene40684.t1 |
| chr4.1 | exon | 33345607 | 33345718 | 33345607 | ID=MS.gene40684.t1.exon3;Parent=MS.gene40684.t1 |
| chr4.1 | CDS | 33345607 | 33345718 | 33345607 | ID=cds.MS.gene40684.t1;Parent=MS.gene40684.t1 |
| chr4.1 | exon | 33345876 | 33346148 | 33345876 | ID=MS.gene40684.t1.exon4;Parent=MS.gene40684.t1 |
| chr4.1 | CDS | 33345876 | 33346148 | 33345876 | ID=cds.MS.gene40684.t1;Parent=MS.gene40684.t1 |
| chr4.1 | exon | 33346316 | 33346581 | 33346316 | ID=MS.gene40684.t1.exon5;Parent=MS.gene40684.t1 |
| chr4.1 | CDS | 33346316 | 33346581 | 33346316 | ID=cds.MS.gene40684.t1;Parent=MS.gene40684.t1 |
| chr4.1 | exon | 33347164 | 33347320 | 33347164 | ID=MS.gene40684.t1.exon6;Parent=MS.gene40684.t1 |
| chr4.1 | CDS | 33347164 | 33347320 | 33347164 | ID=cds.MS.gene40684.t1;Parent=MS.gene40684.t1 |
| chr4.1 | exon | 33347417 | 33347500 | 33347417 | ID=MS.gene40684.t1.exon7;Parent=MS.gene40684.t1 |
| chr4.1 | CDS | 33347417 | 33347500 | 33347417 | ID=cds.MS.gene40684.t1;Parent=MS.gene40684.t1 |
| chr4.1 | exon | 33347735 | 33347893 | 33347735 | ID=MS.gene40684.t1.exon8;Parent=MS.gene40684.t1 |
| chr4.1 | CDS | 33347735 | 33347893 | 33347735 | ID=cds.MS.gene40684.t1;Parent=MS.gene40684.t1 |
| Gene Sequence |
| Protein sequence |
