Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40697.t1 | XP_013462060.1 | 97.5 | 594 | 15 | 0 | 1 | 594 | 1 | 594 | 0.00E+00 | 1187.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40697.t1 | O23247 | 67.1 | 586 | 185 | 4 | 10 | 594 | 62 | 640 | 4.7e-237 | 822.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40697.t1 | A0A072VD42 | 97.5 | 594 | 15 | 0 | 1 | 594 | 1 | 594 | 0.0e+00 | 1187.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene058827 | MS.gene40697 | 0.801198 | 1.01E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene40697 | MS.gene065875 | PPI |
MS.gene58136 | MS.gene40697 | PPI |
MS.gene052373 | MS.gene40697 | PPI |
MS.gene58134 | MS.gene40697 | PPI |
MS.gene97346 | MS.gene40697 | PPI |
MS.gene40697 | MS.gene031761 | PPI |
MS.gene030686 | MS.gene40697 | PPI |
MS.gene40697 | MS.gene061256 | PPI |
MS.gene40697 | MS.gene030099 | PPI |
MS.gene26848 | MS.gene40697 | PPI |
MS.gene68406 | MS.gene40697 | PPI |
MS.gene029093 | MS.gene40697 | PPI |
MS.gene066439 | MS.gene40697 | PPI |
MS.gene40697 | MS.gene70283 | PPI |
MS.gene28454 | MS.gene40697 | PPI |
MS.gene80766 | MS.gene40697 | PPI |
MS.gene70282 | MS.gene40697 | PPI |
MS.gene030685 | MS.gene40697 | PPI |
MS.gene40697 | MS.gene037771 | PPI |
MS.gene28183 | MS.gene40697 | PPI |
MS.gene90825 | MS.gene40697 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40697.t1 | MTR_3g110380 | 97.475 | 594 | 15 | 0 | 1 | 594 | 1 | 594 | 0.0 | 1213 |
MS.gene40697.t1 | MTR_1g106040 | 92.101 | 595 | 45 | 2 | 1 | 594 | 1 | 594 | 0.0 | 1148 |
MS.gene40697.t1 | MTR_4g102240 | 80.431 | 603 | 99 | 4 | 1 | 593 | 1 | 594 | 0.0 | 1006 |
MS.gene40697.t1 | MTR_6g088865 | 76.391 | 593 | 138 | 2 | 3 | 594 | 66 | 657 | 0.0 | 981 |
MS.gene40697.t1 | MTR_3g110385 | 63.462 | 260 | 57 | 4 | 603 | 846 | 20 | 257 | 2.33e-86 | 293 |
MS.gene40697.t1 | MTR_2g091370 | 32.967 | 273 | 142 | 7 | 593 | 824 | 60 | 332 | 2.19e-25 | 113 |
MS.gene40697.t1 | MTR_2g010420 | 36.749 | 283 | 119 | 8 | 599 | 851 | 49 | 301 | 4.37e-25 | 112 |
MS.gene40697.t1 | MTR_2g010420 | 36.749 | 283 | 119 | 8 | 599 | 851 | 49 | 301 | 5.01e-25 | 112 |
MS.gene40697.t1 | MTR_2g091030 | 33.460 | 263 | 150 | 5 | 587 | 824 | 59 | 321 | 8.81e-24 | 107 |
MS.gene40697.t1 | MTR_7g099100 | 54.167 | 96 | 39 | 1 | 25 | 120 | 6 | 96 | 3.95e-22 | 94.0 |
MS.gene40697.t1 | MTR_2g091315 | 32.342 | 269 | 139 | 8 | 600 | 832 | 43 | 304 | 5.49e-21 | 98.6 |
MS.gene40697.t1 | MTR_2g091245 | 29.508 | 305 | 162 | 7 | 592 | 854 | 23 | 316 | 9.05e-21 | 98.2 |
MS.gene40697.t1 | MTR_5g038810 | 37.069 | 232 | 112 | 6 | 594 | 824 | 12 | 210 | 2.18e-20 | 97.1 |
MS.gene40697.t1 | MTR_2g091080 | 32.090 | 268 | 142 | 7 | 600 | 832 | 23 | 285 | 3.82e-20 | 96.3 |
MS.gene40697.t1 | MTR_2g091110 | 32.014 | 278 | 135 | 8 | 598 | 832 | 29 | 295 | 7.01e-20 | 96.3 |
MS.gene40697.t1 | MTR_2g091010 | 28.660 | 321 | 187 | 8 | 553 | 832 | 25 | 344 | 3.29e-19 | 93.2 |
MS.gene40697.t1 | MTR_2g091325 | 29.856 | 278 | 165 | 5 | 600 | 853 | 72 | 343 | 3.39e-18 | 89.7 |
MS.gene40697.t1 | MTR_2g091105 | 32.806 | 253 | 149 | 7 | 590 | 832 | 67 | 308 | 4.83e-18 | 89.4 |
MS.gene40697.t1 | MTR_2g091260 | 32.950 | 261 | 121 | 7 | 595 | 832 | 71 | 300 | 2.16e-17 | 87.8 |
MS.gene40697.t1 | MTR_4g084920 | 39.011 | 182 | 88 | 6 | 666 | 824 | 11 | 192 | 3.53e-17 | 84.0 |
MS.gene40697.t1 | MTR_2g091290 | 31.698 | 265 | 144 | 7 | 595 | 826 | 44 | 304 | 3.68e-17 | 87.0 |
MS.gene40697.t1 | MTR_2g091330 | 29.139 | 302 | 151 | 10 | 554 | 826 | 22 | 289 | 6.97e-15 | 79.3 |
MS.gene40697.t1 | MTR_6g045183 | 29.603 | 277 | 161 | 5 | 595 | 854 | 73 | 332 | 7.88e-15 | 79.3 |
MS.gene40697.t1 | MTR_2g104190 | 30.100 | 299 | 153 | 10 | 593 | 851 | 99 | 381 | 2.56e-14 | 77.4 |
MS.gene40697.t1 | MTR_2g093010 | 29.964 | 277 | 145 | 8 | 612 | 839 | 56 | 332 | 9.26e-14 | 75.9 |
MS.gene40697.t1 | MTR_2g093010 | 29.964 | 277 | 145 | 8 | 612 | 839 | 57 | 333 | 1.01e-13 | 75.9 |
MS.gene40697.t1 | MTR_2g091335 | 27.459 | 244 | 154 | 5 | 608 | 840 | 63 | 294 | 1.05e-13 | 75.5 |
MS.gene40697.t1 | MTR_2g091285 | 26.159 | 302 | 181 | 7 | 594 | 854 | 42 | 342 | 1.28e-11 | 68.6 |
MS.gene40697.t1 | MTR_2g091015 | 29.461 | 241 | 110 | 7 | 607 | 826 | 57 | 258 | 2.30e-11 | 68.2 |
MS.gene40697.t1 | MTR_5g014910 | 66.667 | 36 | 12 | 0 | 241 | 276 | 18 | 53 | 4.70e-11 | 61.6 |
MS.gene40697.t1 | MTR_2g091280 | 31.557 | 244 | 137 | 7 | 607 | 832 | 64 | 295 | 6.70e-11 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40697.t1 | AT4G26300 | 67.121 | 587 | 185 | 4 | 9 | 594 | 61 | 640 | 0.0 | 842 |
MS.gene40697.t1 | AT4G26300 | 67.121 | 587 | 185 | 4 | 9 | 594 | 35 | 614 | 0.0 | 842 |
MS.gene40697.t1 | AT4G26300 | 67.121 | 587 | 185 | 4 | 9 | 594 | 72 | 651 | 0.0 | 841 |
MS.gene40697.t1 | AT4G26300 | 67.121 | 587 | 185 | 4 | 9 | 594 | 9 | 588 | 0.0 | 840 |
MS.gene40697.t1 | AT4G26300 | 67.121 | 587 | 185 | 4 | 9 | 594 | 48 | 627 | 0.0 | 840 |
MS.gene40697.t1 | AT1G66530 | 65.866 | 583 | 190 | 4 | 12 | 594 | 15 | 588 | 0.0 | 816 |
Find 185 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCAACACATGCATCAATTAA+TGG | 0.172308 | 3.2:-88541887 | None:intergenic |
TCAGATTCATTAACATCTTC+TGG | 0.173947 | 3.2:-88543061 | None:intergenic |
TTGGAGAAACTGGAGAAATT+AGG | 0.196989 | 3.2:+88545443 | MS.gene40697:CDS |
TCCAAAGTTGGAGGGATTAA+TGG | 0.219730 | 3.2:-88545425 | None:intergenic |
TTTACCAGATTTCCTGATAA+TGG | 0.236837 | 3.2:-88547984 | None:intergenic |
TCATCAAAAGGCCTCTTAAT+TGG | 0.239025 | 3.2:-88551277 | None:intergenic |
ACATCAGAGGCAATTGGATA+TGG | 0.260123 | 3.2:+88546602 | MS.gene40697:CDS |
CCCTCCAACTTTGGAGAAAC+TGG | 0.266401 | 3.2:+88545433 | MS.gene40697:CDS |
GAGAGCTTCCCCAAACAATT+TGG | 0.274479 | 3.2:-88541828 | None:intergenic |
CCGGTCACATTGCTTCTCTT+TGG | 0.276694 | 3.2:-88551976 | None:intergenic |
AAGCAATTGGCCAAATTGTT+TGG | 0.282832 | 3.2:+88541818 | MS.gene40697:CDS |
TTCCCATGCCGTCCGATACT+TGG | 0.289745 | 3.2:-88543846 | None:intergenic |
CACCTCAGGTCAACCATTAT+TGG | 0.294478 | 3.2:+88542425 | MS.gene40697:CDS |
GGATATTCATTTGGATCCTT+TGG | 0.298860 | 3.2:-88546261 | None:intergenic |
AAATTTCTTTGTGAAGATTT+CGG | 0.299407 | 3.2:-88548628 | None:intergenic |
AGCAATTGGCCAAATTGTTT+GGG | 0.309303 | 3.2:+88541819 | MS.gene40697:CDS |
CTAGGATCTGTTCCATTATC+AGG | 0.309543 | 3.2:+88547972 | MS.gene40697:CDS |
ACCTCAGGTCAACCATTATT+GGG | 0.313878 | 3.2:+88542426 | MS.gene40697:CDS |
TCGTGCTCTGTTGCCGGTCC+TGG | 0.321224 | 3.2:+88542155 | MS.gene40697:CDS |
TCCATTAATCCCTCCAACTT+TGG | 0.322437 | 3.2:+88545424 | MS.gene40697:CDS |
ATATGCACTCACATAGGTTT+TGG | 0.326006 | 3.2:+88546285 | MS.gene40697:CDS |
TCATTAACATCTTCTGGGTT+TGG | 0.326059 | 3.2:-88543055 | None:intergenic |
TCCTTCATCCTCACGGAAAA+TGG | 0.326679 | 3.2:-88551367 | None:intergenic |
CAAGTGTTGCTTCACATAAA+AGG | 0.328036 | 3.2:-88548785 | None:intergenic |
CAACACATGCATCAATTAAT+GGG | 0.332921 | 3.2:-88541886 | None:intergenic |
GCGATGATGGAAAACGATTT+CGG | 0.335463 | 3.2:+88546319 | MS.gene40697:CDS |
ATTTACTTGATGAAGCTAAA+AGG | 0.368508 | 3.2:+88546373 | MS.gene40697:CDS |
TGGAGAAACTGGAGAAATTA+GGG | 0.368736 | 3.2:+88545444 | MS.gene40697:CDS |
GTAGAATCGTGCTCTGTTGC+CGG | 0.374591 | 3.2:+88542149 | MS.gene40697:CDS |
GTGCATATTGGATATTCATT+TGG | 0.374710 | 3.2:-88546270 | None:intergenic |
TGGAATTCGTTTGGAGGAAA+TGG | 0.377788 | 3.2:+88543919 | MS.gene40697:CDS |
TCAACGCCTTGGAATTCGTT+TGG | 0.379547 | 3.2:+88543910 | MS.gene40697:CDS |
GTGTGAATACCTGTATAATT+TGG | 0.380982 | 3.2:+88548605 | MS.gene40697:CDS |
TTCTCCAGTTTCTCCAAAGT+TGG | 0.388161 | 3.2:-88545437 | None:intergenic |
GTGGGTCATAACTTGTAAAC+TGG | 0.389130 | 3.2:-88548846 | None:intergenic |
AACAAATTTGCGATGTTAGT+AGG | 0.395490 | 3.2:+88543867 | MS.gene40697:CDS |
CTCGTGACAGAATGGTAATT+TGG | 0.401118 | 3.2:+88548281 | MS.gene40697:intron |
TGATCAGATGCTTAATGATA+AGG | 0.402610 | 3.2:+88547643 | MS.gene40697:CDS |
ACTTCCAATCAAGAGGGTTA+TGG | 0.403068 | 3.2:+88542358 | MS.gene40697:CDS |
AAACCTATGTGAGTGCATAT+TGG | 0.403957 | 3.2:-88546282 | None:intergenic |
TGTTCCATTATCAGGAAATC+TGG | 0.404568 | 3.2:+88547980 | MS.gene40697:CDS |
CAGATTCATTAACATCTTCT+GGG | 0.405868 | 3.2:-88543060 | None:intergenic |
AATGCCTTTGTCAGGTTGTT+GGG | 0.416932 | 3.2:+88548739 | MS.gene40697:intron |
TGCAAGTGTGTCCCCAATAA+TGG | 0.417234 | 3.2:-88542438 | None:intergenic |
TTTCTGCGGATCAAACATTC+AGG | 0.418149 | 3.2:-88542482 | None:intergenic |
AACCTCCTCACATACACCTT+TGG | 0.420214 | 3.2:-88551334 | None:intergenic |
TTACTACACTTCCAATTAAG+AGG | 0.423331 | 3.2:+88551266 | MS.gene40697:CDS |
GAATGCCTTTGTCAGGTTGT+TGG | 0.428174 | 3.2:+88548738 | MS.gene40697:intron |
ATCCCTTGAGAGAGATGTTA+AGG | 0.438252 | 3.2:+88551474 | MS.gene40697:CDS |
ATATTGTCTTATCAAAGAAC+TGG | 0.438276 | 3.2:+88542186 | MS.gene40697:CDS |
TCAACCATAACCCTCTTGAT+TGG | 0.439386 | 3.2:-88542362 | None:intergenic |
TTACCGATGGTATTGATTCA+TGG | 0.440119 | 3.2:+88542327 | MS.gene40697:CDS |
TATCAGGCCTTTAGGCGTGC+AGG | 0.441463 | 3.2:+88546231 | MS.gene40697:intron |
GATGTTAATGAATCTGATAT+TGG | 0.446312 | 3.2:+88543067 | MS.gene40697:CDS |
TGTTAAAGATCTTGAAGAAA+AGG | 0.447556 | 3.2:+88551593 | MS.gene40697:CDS |
ATCTAGATAATGCTAAAGAT+TGG | 0.451886 | 3.2:+88546558 | MS.gene40697:intron |
TGAATGACGAAAAGCTTGAT+TGG | 0.453450 | 3.2:+88546087 | MS.gene40697:CDS |
TCAGGTTGTTGGGTCGCCTC+AGG | 0.453632 | 3.2:+88548749 | MS.gene40697:intron |
AATATATATGTTACAGATGT+TGG | 0.453832 | 3.2:+88546110 | MS.gene40697:CDS |
AGATTTCGGCCAAATTATAC+AGG | 0.458703 | 3.2:-88548614 | None:intergenic |
AGGTATTCACACAACATGTT+TGG | 0.458883 | 3.2:-88548594 | None:intergenic |
GAAGAAGCAATTTGAAGATC+GGG | 0.459630 | 3.2:+88551938 | MS.gene40697:CDS |
TCTATAAGGCCTCAAAATTG+AGG | 0.463809 | 3.2:+88543638 | MS.gene40697:CDS |
AAGCCACCCTGCACGCCTAA+AGG | 0.464613 | 3.2:-88546238 | None:intergenic |
AGACATTGCTTCTATCTCCT+TGG | 0.465394 | 3.2:+88548816 | MS.gene40697:CDS |
TGAAGAAGCAATTTGAAGAT+CGG | 0.465409 | 3.2:+88551937 | MS.gene40697:CDS |
CATCAGAGGCAATTGGATAT+GGG | 0.465414 | 3.2:+88546603 | MS.gene40697:CDS |
TTCACAAATCCACGTTCACT+TGG | 0.466361 | 3.2:+88542089 | MS.gene40697:CDS |
GAGAAAACATCAGAGGCAAT+TGG | 0.470928 | 3.2:+88546596 | MS.gene40697:CDS |
ATCTGATATTGGAGATCTAC+AGG | 0.471616 | 3.2:+88543078 | MS.gene40697:CDS |
GACAATGGCATCGGATTGAG+TGG | 0.477571 | 3.2:-88541864 | None:intergenic |
TTTCTTGTTTAAAAGCTCGT+TGG | 0.478810 | 3.2:-88551503 | None:intergenic |
AAATCTCCCTTCATCACAAA+TGG | 0.479562 | 3.2:+88542127 | MS.gene40697:CDS |
GTAATGGACAAGAGGAAAAG+AGG | 0.479853 | 3.2:+88551874 | MS.gene40697:CDS |
GCAATTTGAAGATCGGGTTA+CGG | 0.481251 | 3.2:+88551944 | MS.gene40697:CDS |
CAGAAATCATATCGGTGACT+GGG | 0.481664 | 3.2:+88542499 | MS.gene40697:CDS |
TCCCATGCCGTCCGATACTT+GGG | 0.487455 | 3.2:-88543845 | None:intergenic |
TCCAGTTTCTCCAAAGTTGG+AGG | 0.488329 | 3.2:-88545434 | None:intergenic |
CATGAAGACGAGCGTACATT+GGG | 0.490201 | 3.2:+88548312 | MS.gene40697:CDS |
AACAAGGTCTATCAACGCCT+TGG | 0.490271 | 3.2:+88543899 | MS.gene40697:CDS |
ATTTGTTGTATGCACATGCT+AGG | 0.493285 | 3.2:+88547954 | MS.gene40697:CDS |
GAATTGTTGTTATCATCAAA+AGG | 0.494206 | 3.2:-88551289 | None:intergenic |
AAATGCATGTTGGTCACCTC+AGG | 0.499582 | 3.2:+88542411 | MS.gene40697:CDS |
TGCGAGTGTGAAGAAGCAAT+TGG | 0.502186 | 3.2:+88541805 | MS.gene40697:CDS |
TAAGATTAAAGGGAAGCAAC+AGG | 0.503033 | 3.2:+88542064 | MS.gene40697:CDS |
GCAGAAATCATATCGGTGAC+TGG | 0.505203 | 3.2:+88542498 | MS.gene40697:CDS |
TACCGATGGTATTGATTCAT+GGG | 0.505587 | 3.2:+88542328 | MS.gene40697:CDS |
ATCCCAAGTATCGGACGGCA+TGG | 0.509954 | 3.2:+88543843 | MS.gene40697:CDS |
AATGGATTGAAGAAGCTCTC+TGG | 0.510485 | 3.2:-88545407 | None:intergenic |
GATTCTACCATTTGTGATGA+AGG | 0.511863 | 3.2:-88542134 | None:intergenic |
TGTGATGATATCAAAAGTAA+TGG | 0.511915 | 3.2:+88551858 | MS.gene40697:CDS |
GAATAAGCTCCTTTAGCCAC+CGG | 0.513022 | 3.2:-88551995 | None:intergenic |
AAGACAATATTGACAAATCC+AGG | 0.513254 | 3.2:-88542173 | None:intergenic |
GCAGTCAGTGGTCAAGCTCC+AGG | 0.516493 | 3.2:+88543696 | MS.gene40697:CDS |
AATTGCTTCTTCACACTCGC+AGG | 0.521602 | 3.2:-88541803 | None:intergenic |
GCACCCGGTGTGTTTAATTG+AGG | 0.521806 | 3.2:+88551618 | MS.gene40697:CDS |
TCGAAGCAAGAGAAATTTGA+AGG | 0.522768 | 3.2:+88552058 | MS.gene40697:CDS |
GCAATGTGACCGGTGGCTAA+AGG | 0.526251 | 3.2:+88551986 | MS.gene40697:CDS |
ACGCCTTGGAATTCGTTTGG+AGG | 0.527026 | 3.2:+88543913 | MS.gene40697:CDS |
CCAGTTTCTCCAAAGTTGGA+GGG | 0.527284 | 3.2:-88545433 | None:intergenic |
GGTCTTGTTCTTGGCGATGA+TGG | 0.528164 | 3.2:+88546306 | MS.gene40697:CDS |
TCAAACCTGCTGATTATCAA+TGG | 0.530418 | 3.2:+88541921 | MS.gene40697:CDS |
GCTCGTGTGATATTTGTTGA+GGG | 0.532483 | 3.2:+88545488 | MS.gene40697:CDS |
GCATGAAGACGAGCGTACAT+TGG | 0.535587 | 3.2:+88548311 | MS.gene40697:CDS |
TGTGCATTTAACTTAAAAGC+AGG | 0.536730 | 3.2:-88543673 | None:intergenic |
ATATACCATTGATAATCAGC+AGG | 0.547065 | 3.2:-88541926 | None:intergenic |
ATAAAGATGGTGGAAGGAAG+AGG | 0.550891 | 3.2:+88551713 | MS.gene40697:CDS |
TGCGGATCAAACATTCAGGC+TGG | 0.551051 | 3.2:-88542478 | None:intergenic |
TATGTTCTCCTTCATCCTCA+CGG | 0.551122 | 3.2:-88551374 | None:intergenic |
CTTCTTAACCGAAGTGTGGA+AGG | 0.551615 | 3.2:-88551311 | None:intergenic |
ATTCTACCATTTGTGATGAA+GGG | 0.556434 | 3.2:-88542133 | None:intergenic |
TTGATCCGCAGAAATCATAT+CGG | 0.558264 | 3.2:+88542491 | MS.gene40697:CDS |
GCTCCTTAACATCTCTCTCA+AGG | 0.560142 | 3.2:-88551477 | None:intergenic |
TATCGGTGACTGGGGCACTC+AGG | 0.561550 | 3.2:+88542508 | MS.gene40697:CDS |
ATCAGGCCTTTAGGCGTGCA+GGG | 0.563275 | 3.2:+88546232 | MS.gene40697:intron |
TCCCAAGTATCGGACGGCAT+GGG | 0.567055 | 3.2:+88543844 | MS.gene40697:CDS |
TGCTCGTGTGATATTTGTTG+AGG | 0.567259 | 3.2:+88545487 | MS.gene40697:CDS |
CTGATGGTTCTGTTCAGAAG+AGG | 0.567577 | 3.2:+88551242 | MS.gene40697:CDS |
CAACAATTCCTTCCACACTT+CGG | 0.573263 | 3.2:+88551303 | MS.gene40697:CDS |
ACAGAATGGTAATTTGGTGT+TGG | 0.573671 | 3.2:+88548287 | MS.gene40697:intron |
GCGTGCAGGGTGGCTTCCAA+AGG | 0.588234 | 3.2:+88546245 | MS.gene40697:CDS |
CAACTGATCTAGCATCACTT+CGG | 0.588528 | 3.2:+88545564 | MS.gene40697:CDS |
TATCAAAAGTAATGGACAAG+AGG | 0.594026 | 3.2:+88551866 | MS.gene40697:CDS |
ATCAAAGAACTGGATAGCAC+AGG | 0.594429 | 3.2:+88542196 | MS.gene40697:CDS |
AATTAATGGGACAATGGCAT+CGG | 0.594515 | 3.2:-88541873 | None:intergenic |
ATCAGAGGCAATTGGATATG+GGG | 0.594771 | 3.2:+88546604 | MS.gene40697:CDS |
CTCCTTAACATCTCTCTCAA+GGG | 0.596149 | 3.2:-88551476 | None:intergenic |
GGTTTGGAAATTTCTCAAAG+AGG | 0.596587 | 3.2:-88543039 | None:intergenic |
TATCCAATATGCACTCACAT+AGG | 0.597532 | 3.2:+88546279 | MS.gene40697:CDS |
CCAAAGAGAAGCAATGTGAC+CGG | 0.598231 | 3.2:+88551976 | MS.gene40697:CDS |
TCATTTACTGCAATTTACTG+AGG | 0.600598 | 3.2:+88548338 | MS.gene40697:CDS |
CTTGAAGAAAAGGAAGCACC+CGG | 0.600916 | 3.2:+88551603 | MS.gene40697:CDS |
GAGGCTAACAACGATAAAGA+TGG | 0.601268 | 3.2:+88551700 | MS.gene40697:CDS |
AAATCCACGTTCACTTGGAG+AGG | 0.601303 | 3.2:+88542094 | MS.gene40697:CDS |
TGCATCAATTAATGGGACAA+TGG | 0.604895 | 3.2:-88541879 | None:intergenic |
AGATAATGCTAAAGATTGGA+CGG | 0.605541 | 3.2:+88546562 | MS.gene40697:intron |
TTTCCTCCAAACGAATTCCA+AGG | 0.606920 | 3.2:-88543916 | None:intergenic |
AGGGAGGGGATCCCAAGTAT+CGG | 0.609503 | 3.2:+88543834 | MS.gene40697:intron |
TGCCCATGAATCAATACCAT+CGG | 0.610478 | 3.2:-88542330 | None:intergenic |
TTGGCTTCTTAACCGAAGTG+TGG | 0.611996 | 3.2:-88551315 | None:intergenic |
AATATTGACAAATCCAGGAC+CGG | 0.612733 | 3.2:-88542168 | None:intergenic |
TGTAAACTGGATCAATTCCA+AGG | 0.613591 | 3.2:-88548833 | None:intergenic |
ACAACGATAAAGATGGTGGA+AGG | 0.616724 | 3.2:+88551707 | MS.gene40697:CDS |
ATATGTAGTAGTAACTCTGA+TGG | 0.617141 | 3.2:+88551226 | MS.gene40697:intron |
CTAATTGCTGTGAAAAGAGA+TGG | 0.619319 | 3.2:+88545524 | MS.gene40697:CDS |
ATAGCAAAAGAAATGCATGT+TGG | 0.624017 | 3.2:+88542401 | MS.gene40697:CDS |
ACCCTCTTGATTGGAAGTCG+AGG | 0.627107 | 3.2:-88542353 | None:intergenic |
CACCTCGACTTCCAATCAAG+AGG | 0.630058 | 3.2:+88542351 | MS.gene40697:CDS |
AAAGGTGTATGTGAGGAGGT+TGG | 0.630170 | 3.2:+88551336 | MS.gene40697:CDS |
ATGCCCTCTCCAAGTGAACG+TGG | 0.632374 | 3.2:-88542098 | None:intergenic |
AGAGATTGAGAAAACATCAG+AGG | 0.641877 | 3.2:+88546589 | MS.gene40697:CDS |
GCAATTGGCCAAATTGTTTG+GGG | 0.643100 | 3.2:+88541820 | MS.gene40697:CDS |
GCTAACAACGATAAAGATGG+TGG | 0.643272 | 3.2:+88551703 | MS.gene40697:CDS |
AGCCAAAGGTGTATGTGAGG+AGG | 0.644020 | 3.2:+88551332 | MS.gene40697:CDS |
ACCTCGACTTCCAATCAAGA+GGG | 0.646268 | 3.2:+88542352 | MS.gene40697:CDS |
AAGTCCTCAATTAAACACAC+CGG | 0.647055 | 3.2:-88551622 | None:intergenic |
AGTCCTCAATTAAACACACC+GGG | 0.648877 | 3.2:-88551621 | None:intergenic |
ACACTTTAAAGTACAAGCGA+AGG | 0.649833 | 3.2:+88552027 | MS.gene40697:CDS |
AGGGGATCCCAAGTATCGGA+CGG | 0.652831 | 3.2:+88543838 | MS.gene40697:CDS |
AAAGTTGCTCTTCTTGAACG+TGG | 0.655376 | 3.2:+88546402 | MS.gene40697:CDS |
GTTAAATGCACAGCAGTCAG+TGG | 0.656532 | 3.2:+88543684 | MS.gene40697:CDS |
AGAAGCCAAAGGTGTATGTG+AGG | 0.658301 | 3.2:+88551329 | MS.gene40697:CDS |
GATAGAACTTCGTAAAATCG+AGG | 0.659013 | 3.2:+88551681 | MS.gene40697:CDS |
ATGTTACAGATGTTGGTCAG+TGG | 0.661892 | 3.2:+88546117 | MS.gene40697:CDS |
ACAATGGCATCGGATTGAGT+GGG | 0.663147 | 3.2:-88541863 | None:intergenic |
TAGTAGGACTGAATTTAACA+AGG | 0.668429 | 3.2:+88543883 | MS.gene40697:CDS |
CCTCAGGTCAACCATTATTG+GGG | 0.671050 | 3.2:+88542427 | MS.gene40697:CDS |
ATGGACAAGAGGAAAAGAGG+AGG | 0.671571 | 3.2:+88551877 | MS.gene40697:CDS |
ATTGCTGTGAAAAGAGATGG+TGG | 0.673425 | 3.2:+88545527 | MS.gene40697:CDS |
AGGCCTTTAGGCGTGCAGGG+TGG | 0.674553 | 3.2:+88546235 | MS.gene40697:intron |
AGAAATCATATCGGTGACTG+GGG | 0.675252 | 3.2:+88542500 | MS.gene40697:CDS |
AGTCACCGATATGATTTCTG+CGG | 0.678006 | 3.2:-88542496 | None:intergenic |
GGGCTGATTGAAGAAAATGA+TGG | 0.678059 | 3.2:+88545464 | MS.gene40697:CDS |
AATCCACGTTCACTTGGAGA+GGG | 0.679916 | 3.2:+88542095 | MS.gene40697:CDS |
AAGAGAAGCAATGTGACCGG+TGG | 0.682097 | 3.2:+88551979 | MS.gene40697:CDS |
TTACAGAGGATGCTTACCGA+TGG | 0.686104 | 3.2:+88542314 | MS.gene40697:CDS |
TGATGAACTTACAATGAACA+TGG | 0.690620 | 3.2:-88541691 | None:intergenic |
CCCCAATAATGGTTGACCTG+AGG | 0.699236 | 3.2:-88542427 | None:intergenic |
CACTTCGGTTAAGAAGCCAA+AGG | 0.701774 | 3.2:+88551318 | MS.gene40697:CDS |
TGCATACAACAAATAAACAG+CGG | 0.707344 | 3.2:-88547945 | None:intergenic |
TTGCGAAAGAATGAAGAACG+TGG | 0.709330 | 3.2:+88551435 | MS.gene40697:CDS |
TCCTCCTGCAGAGATTACAG+AGG | 0.712412 | 3.2:+88542300 | MS.gene40697:intron |
AGGAGTCTACTAGTTTCCTG+AGG | 0.715802 | 3.2:-88548765 | None:intergenic |
CGAAAGAATGAAGAACGTGG+AGG | 0.722594 | 3.2:+88551438 | MS.gene40697:CDS |
TAATGCTAAAGATTGGACGG+AGG | 0.726813 | 3.2:+88546565 | MS.gene40697:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 88541693 | 88552088 | 88541693 | ID=MS.gene40697 |
chr3.2 | mRNA | 88541693 | 88552088 | 88541693 | ID=MS.gene40697.t1;Parent=MS.gene40697 |
chr3.2 | exon | 88541693 | 88541701 | 88541693 | ID=MS.gene40697.t1.exon1;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88541693 | 88541701 | 88541693 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
chr3.2 | exon | 88541791 | 88541942 | 88541791 | ID=MS.gene40697.t1.exon2;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88541791 | 88541942 | 88541791 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
chr3.2 | exon | 88542040 | 88542217 | 88542040 | ID=MS.gene40697.t1.exon3;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88542040 | 88542217 | 88542040 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
chr3.2 | exon | 88542311 | 88542529 | 88542311 | ID=MS.gene40697.t1.exon4;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88542311 | 88542529 | 88542311 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
chr3.2 | exon | 88543019 | 88543099 | 88543019 | ID=MS.gene40697.t1.exon5;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88543019 | 88543099 | 88543019 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
chr3.2 | exon | 88543634 | 88543717 | 88543634 | ID=MS.gene40697.t1.exon6;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88543634 | 88543717 | 88543634 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
chr3.2 | exon | 88543836 | 88543940 | 88543836 | ID=MS.gene40697.t1.exon7;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88543836 | 88543940 | 88543836 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
chr3.2 | exon | 88545407 | 88545585 | 88545407 | ID=MS.gene40697.t1.exon8;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88545407 | 88545585 | 88545407 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
chr3.2 | exon | 88546079 | 88546163 | 88546079 | ID=MS.gene40697.t1.exon9;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88546079 | 88546163 | 88546079 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
chr3.2 | exon | 88546237 | 88546423 | 88546237 | ID=MS.gene40697.t1.exon10;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88546237 | 88546423 | 88546237 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
chr3.2 | exon | 88546564 | 88546633 | 88546564 | ID=MS.gene40697.t1.exon11;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88546564 | 88546633 | 88546564 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
chr3.2 | exon | 88547595 | 88547664 | 88547595 | ID=MS.gene40697.t1.exon12;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88547595 | 88547664 | 88547595 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
chr3.2 | exon | 88547938 | 88548027 | 88547938 | ID=MS.gene40697.t1.exon13;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88547938 | 88548027 | 88547938 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
chr3.2 | exon | 88548291 | 88548359 | 88548291 | ID=MS.gene40697.t1.exon14;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88548291 | 88548359 | 88548291 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
chr3.2 | exon | 88548564 | 88548665 | 88548564 | ID=MS.gene40697.t1.exon15;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88548564 | 88548665 | 88548564 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
chr3.2 | exon | 88548753 | 88548856 | 88548753 | ID=MS.gene40697.t1.exon16;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88548753 | 88548856 | 88548753 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
chr3.2 | exon | 88551234 | 88551771 | 88551234 | ID=MS.gene40697.t1.exon17;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88551234 | 88551771 | 88551234 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
chr3.2 | exon | 88551840 | 88552088 | 88551840 | ID=MS.gene40697.t1.exon18;Parent=MS.gene40697.t1 |
chr3.2 | CDS | 88551840 | 88552088 | 88551840 | ID=cds.MS.gene40697.t1;Parent=MS.gene40697.t1 |
Gene Sequence |
Protein sequence |