Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41464.t1 | XP_024635249.1 | 84.8 | 573 | 64 | 2 | 1 | 551 | 1 | 572 | 3.90E-276 | 960.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41464.t1 | Q4F883 | 36.1 | 554 | 290 | 18 | 10 | 535 | 9 | 526 | 7.8e-76 | 286.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41464.t1 | A0A072V8I6 | 84.4 | 576 | 64 | 2 | 1 | 551 | 1 | 575 | 6.2e-276 | 959.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene41464 | 0.850794 | 1.35E-60 | -1.69E-46 |
| MS.gene049567 | MS.gene41464 | 0.911172 | 8.21E-83 | -1.69E-46 |
| MS.gene050026 | MS.gene41464 | 0.806978 | 6.33E-50 | -1.69E-46 |
| MS.gene050355 | MS.gene41464 | 0.810292 | 1.24E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene41464 | 0.803168 | 3.96E-49 | -1.69E-46 |
| MS.gene050561 | MS.gene41464 | 0.804631 | 1.97E-49 | -1.69E-46 |
| MS.gene051332 | MS.gene41464 | 0.803043 | 4.21E-49 | -1.69E-46 |
| MS.gene051492 | MS.gene41464 | 0.823964 | 1.04E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene41464 | 0.844612 | 6.79E-59 | -1.69E-46 |
| MS.gene052208 | MS.gene41464 | 0.813479 | 2.51E-51 | -1.69E-46 |
| MS.gene052582 | MS.gene41464 | 0.808174 | 3.53E-50 | -1.69E-46 |
| MS.gene052586 | MS.gene41464 | 0.801116 | 1.05E-48 | -1.69E-46 |
| MS.gene052685 | MS.gene41464 | 0.800904 | 1.16E-48 | -1.69E-46 |
| MS.gene053094 | MS.gene41464 | 0.815716 | 8.02E-52 | -1.69E-46 |
| MS.gene053643 | MS.gene41464 | 0.830058 | 3.64E-55 | -1.69E-46 |
| MS.gene05410 | MS.gene41464 | 0.814925 | 1.20E-51 | -1.69E-46 |
| MS.gene05414 | MS.gene41464 | 0.812973 | 3.24E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene41464 | 0.822408 | 2.41E-53 | -1.69E-46 |
| MS.gene05423 | MS.gene41464 | 0.809793 | 1.59E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene41464 | -0.807255 | 5.53E-50 | -1.69E-46 |
| MS.gene054576 | MS.gene41464 | 0.818567 | 1.83E-52 | -1.69E-46 |
| MS.gene055586 | MS.gene41464 | 0.803149 | 4.00E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene41464 | 0.806748 | 7.08E-50 | -1.69E-46 |
| MS.gene056162 | MS.gene41464 | 0.801109 | 1.05E-48 | -1.69E-46 |
| MS.gene056174 | MS.gene41464 | 0.804917 | 1.72E-49 | -1.69E-46 |
| MS.gene056779 | MS.gene41464 | 0.825939 | 3.57E-54 | -1.69E-46 |
| MS.gene05686 | MS.gene41464 | 0.806382 | 8.45E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene41464 | 0.809626 | 1.72E-50 | -1.69E-46 |
| MS.gene058477 | MS.gene41464 | 0.831163 | 1.95E-55 | -1.69E-46 |
| MS.gene058979 | MS.gene41464 | 0.806827 | 6.81E-50 | -1.69E-46 |
| MS.gene060412 | MS.gene41464 | 0.806214 | 9.17E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene41464 | 0.803116 | 4.06E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene41464 | 0.804909 | 1.72E-49 | -1.69E-46 |
| MS.gene060840 | MS.gene41464 | 0.81038 | 1.19E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41464.t1 | MTR_3g467360 | 84.375 | 576 | 64 | 2 | 1 | 551 | 1 | 575 | 0.0 | 993 |
| MS.gene41464.t1 | MTR_3g467360 | 84.211 | 570 | 64 | 2 | 7 | 551 | 13 | 581 | 0.0 | 981 |
| MS.gene41464.t1 | MTR_6g007975 | 64.818 | 577 | 167 | 8 | 5 | 551 | 7 | 577 | 0.0 | 718 |
| MS.gene41464.t1 | MTR_6g008015 | 61.246 | 578 | 187 | 7 | 5 | 551 | 7 | 578 | 0.0 | 684 |
| MS.gene41464.t1 | MTR_6g008055 | 59.729 | 591 | 182 | 13 | 1 | 551 | 1 | 575 | 0.0 | 650 |
| MS.gene41464.t1 | MTR_6g007980 | 55.232 | 583 | 220 | 12 | 1 | 550 | 1 | 575 | 0.0 | 593 |
| MS.gene41464.t1 | MTR_6g007980 | 55.137 | 584 | 220 | 11 | 1 | 550 | 1 | 576 | 0.0 | 592 |
| MS.gene41464.t1 | MTR_6g007980 | 55.043 | 585 | 220 | 11 | 1 | 550 | 1 | 577 | 0.0 | 592 |
| MS.gene41464.t1 | MTR_6g007985 | 62.009 | 458 | 143 | 4 | 120 | 551 | 49 | 501 | 0.0 | 567 |
| MS.gene41464.t1 | MTR_3g467350 | 55.437 | 561 | 161 | 14 | 1 | 551 | 1 | 482 | 0.0 | 533 |
| MS.gene41464.t1 | MTR_0286s0040 | 54.565 | 460 | 107 | 9 | 120 | 551 | 2 | 387 | 5.40e-155 | 448 |
| MS.gene41464.t1 | MTR_0286s0050 | 57.851 | 121 | 45 | 3 | 5 | 120 | 7 | 126 | 4.77e-32 | 121 |
| MS.gene41464.t1 | MTR_3g078633 | 27.042 | 355 | 180 | 17 | 209 | 515 | 276 | 599 | 6.88e-22 | 100 |
| MS.gene41464.t1 | MTR_3g078633 | 27.042 | 355 | 180 | 17 | 209 | 515 | 204 | 527 | 1.09e-21 | 99.0 |
| MS.gene41464.t1 | MTR_3g079340 | 26.689 | 296 | 159 | 12 | 209 | 468 | 277 | 550 | 1.41e-17 | 86.7 |
| MS.gene41464.t1 | MTR_8g494200 | 23.446 | 354 | 213 | 11 | 211 | 522 | 274 | 611 | 1.57e-17 | 86.3 |
| MS.gene41464.t1 | MTR_8g494200 | 36.090 | 133 | 67 | 4 | 94 | 209 | 84 | 215 | 2.74e-14 | 76.3 |
| MS.gene41464.t1 | MTR_0095s0020 | 48.837 | 86 | 38 | 4 | 129 | 209 | 156 | 240 | 3.25e-13 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41464.t1 | AT5G14930 | 36.380 | 558 | 283 | 19 | 10 | 535 | 9 | 526 | 1.73e-91 | 291 |
| MS.gene41464.t1 | AT3G52430 | 25.176 | 425 | 270 | 13 | 130 | 522 | 112 | 520 | 6.67e-31 | 127 |
| MS.gene41464.t1 | AT5G14930 | 36.245 | 229 | 119 | 7 | 10 | 223 | 9 | 225 | 3.20e-28 | 113 |
| MS.gene41464.t1 | AT3G48080 | 25.212 | 353 | 206 | 15 | 209 | 516 | 265 | 604 | 3.34e-12 | 69.7 |
Find 94 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTTGAGGAGTATGTTTA+TGG | 0.174319 | 3.1:-52129281 | MS.gene41464:CDS |
| CTTCATGTCATTCAATTTCT+TGG | 0.175279 | 3.1:+52129811 | None:intergenic |
| ACCACCTTCACTATAGTATT+TGG | 0.184967 | 3.1:+52129535 | None:intergenic |
| GAACTTGAATCTGTTGATTA+TGG | 0.208291 | 3.1:-52130336 | MS.gene41464:CDS |
| CCATATCTCGTAGTTCTATT+TGG | 0.220425 | 3.1:-52130545 | MS.gene41464:CDS |
| TGACTATAGATTCTTGCTTT+TGG | 0.226808 | 3.1:-52129385 | MS.gene41464:CDS |
| ACAGTTGGAGGAGTGGTTAT+TGG | 0.276000 | 3.1:-52129474 | MS.gene41464:CDS |
| AGAATTTCCAAGATAGTATC+TGG | 0.299638 | 3.1:+52130393 | None:intergenic |
| ACCAGTACCTACATGCCTTT+TGG | 0.310304 | 3.1:-52130456 | MS.gene41464:CDS |
| ATATCAGTTGCTAGTGAATC+TGG | 0.321829 | 3.1:+52130240 | None:intergenic |
| GATTTCTTCTTCTGAACTTA+AGG | 0.324062 | 3.1:-52131504 | MS.gene41464:CDS |
| TTTCGTACCCGTTGGTTATA+TGG | 0.328618 | 3.1:-52129599 | MS.gene41464:CDS |
| AAGGAAATTGTTTGAATTTG+AGG | 0.330524 | 3.1:-52129294 | MS.gene41464:CDS |
| TGGAAACTTGATAAAGAAAC+TGG | 0.339523 | 3.1:-52131593 | MS.gene41464:CDS |
| GTCCTATTAAGAGAGAAAAT+TGG | 0.343365 | 3.1:+52131437 | None:intergenic |
| CTGATATCAGTTTGCAGTTA+GGG | 0.344039 | 3.1:-52130224 | MS.gene41464:CDS |
| AAAGCTGCACCTTCTCTTTG+TGG | 0.372497 | 3.1:+52129620 | None:intergenic |
| CCAAATAGAACTACGAGATA+TGG | 0.376458 | 3.1:+52130545 | None:intergenic |
| AAGATGGTGTTGGAATTTCT+TGG | 0.381057 | 3.1:-52131613 | MS.gene41464:CDS |
| AGTGTCCCCTGAGATATTTC+TGG | 0.390259 | 3.1:-52129240 | MS.gene41464:CDS |
| CTACCATCCTTTGCAAATCA+TGG | 0.394861 | 3.1:-52131661 | MS.gene41464:CDS |
| ACTGATATCAGTTTGCAGTT+AGG | 0.395630 | 3.1:-52130225 | MS.gene41464:CDS |
| ATTGTTACCGGACATGGTCT+TGG | 0.397281 | 3.1:-52130687 | MS.gene41464:CDS |
| CGGACTGCGTTGATTGTTAC+CGG | 0.398698 | 3.1:-52130699 | MS.gene41464:CDS |
| TGAGAATCCAGATACTATCT+TGG | 0.409998 | 3.1:-52130400 | MS.gene41464:CDS |
| CACTATTTACTGGGAAAAGA+TGG | 0.411799 | 3.1:-52129663 | MS.gene41464:CDS |
| AAGATTAAACAGTATGCTAT+AGG | 0.429849 | 3.1:-52129122 | MS.gene41464:CDS |
| ATGTCATTCAATTTCTTGGA+TGG | 0.433231 | 3.1:+52129815 | None:intergenic |
| CCAACAGCATCATGGTCAAT+TGG | 0.440770 | 3.1:+52129701 | None:intergenic |
| CGTCCACTCTGCATCACCTT+CGG | 0.442679 | 3.1:-52130603 | MS.gene41464:CDS |
| AATTTGAGGAGTATGTTTAT+GGG | 0.446356 | 3.1:-52129280 | MS.gene41464:CDS |
| GAATGACATGAAGGTACATA+TGG | 0.447625 | 3.1:-52129801 | MS.gene41464:CDS |
| GTCTGAACATTTCAAACAGT+TGG | 0.451266 | 3.1:-52129489 | MS.gene41464:CDS |
| CTTCGTGCCAGAAATATCTC+AGG | 0.453015 | 3.1:+52129233 | None:intergenic |
| GTTCACCGCTTGTTGGTGAC+AGG | 0.456852 | 3.1:-52130581 | MS.gene41464:CDS |
| TGATCCTCCAAGACCATGTC+CGG | 0.476263 | 3.1:+52130680 | None:intergenic |
| ACCTTCGGTTCACCGCTTGT+TGG | 0.478504 | 3.1:-52130588 | MS.gene41464:CDS |
| GCGTTGATTGTTACCGGACA+TGG | 0.479138 | 3.1:-52130693 | MS.gene41464:CDS |
| AATCAAATCAGCTTGAACAT+TGG | 0.479409 | 3.1:+52131523 | None:intergenic |
| CTTGGAAATTCTCGTGGCGT+TGG | 0.490276 | 3.1:-52130382 | MS.gene41464:CDS |
| CAAGTTCTTCTTTCTTATCG+TGG | 0.503646 | 3.1:+52130352 | None:intergenic |
| AAAACTAAGAATGAAAATGC+AGG | 0.513971 | 3.1:-52129755 | MS.gene41464:CDS |
| AAGACTATGTTAATAACAAA+CGG | 0.514980 | 3.1:-52129511 | MS.gene41464:CDS |
| TACATATGGCCCAACTTGAA+TGG | 0.515555 | 3.1:-52129787 | MS.gene41464:CDS |
| CACATGATGAATGTTCCAAA+AGG | 0.519064 | 3.1:+52130441 | None:intergenic |
| TCCAAAAGGCATGTAGGTAC+TGG | 0.521347 | 3.1:+52130455 | None:intergenic |
| GTTACCGGACATGGTCTTGG+AGG | 0.521601 | 3.1:-52130684 | MS.gene41464:CDS |
| CTTCCATGATTTGCAAAGGA+TGG | 0.526288 | 3.1:+52131658 | None:intergenic |
| CGTACCCGTTGGTTATATGG+AGG | 0.529527 | 3.1:-52129596 | MS.gene41464:CDS |
| CAGCATCATGGTCAATTGGT+TGG | 0.530941 | 3.1:+52129705 | None:intergenic |
| AATCAACGCAGTCCGTGGAT+TGG | 0.532802 | 3.1:+52130707 | None:intergenic |
| AAGAGAAATACGAGGCACTA+AGG | 0.532807 | 3.1:-52129313 | MS.gene41464:CDS |
| CAATTGACCATGATGCTGTT+GGG | 0.534264 | 3.1:-52129700 | MS.gene41464:CDS |
| TATGGAACCCAACAGCATCA+TGG | 0.536170 | 3.1:+52129693 | None:intergenic |
| AAGTTTGACACCACGTATGC+AGG | 0.536402 | 3.1:-52130196 | MS.gene41464:intron |
| TTCTTCTTCTGAACTTAAGG+AGG | 0.539287 | 3.1:-52131501 | MS.gene41464:CDS |
| CAAGAAATTGAATGACATGA+AGG | 0.541822 | 3.1:-52129810 | MS.gene41464:CDS |
| AGTCCCTCCATATAACCAAC+GGG | 0.547594 | 3.1:+52129592 | None:intergenic |
| CGATCTGTAATGAAGAGCCT+TGG | 0.549347 | 3.1:+52130480 | None:intergenic |
| ATATCACTGTTACATAACAT+TGG | 0.550190 | 3.1:-52130639 | MS.gene41464:CDS |
| TGAACATTTCAAACAGTTGG+AGG | 0.555656 | 3.1:-52129486 | MS.gene41464:CDS |
| GCCAAATACTATAGTGAAGG+TGG | 0.562312 | 3.1:-52129536 | MS.gene41464:CDS |
| GTAACAATCAACGCAGTCCG+TGG | 0.565263 | 3.1:+52130702 | None:intergenic |
| ATTTCAAACAGTTGGAGGAG+TGG | 0.565495 | 3.1:-52129481 | MS.gene41464:CDS |
| GTATGTTTATGGGTTGCTCA+AGG | 0.569328 | 3.1:-52129270 | MS.gene41464:CDS |
| ATCTCTATCGTAAAGCAACA+TGG | 0.570450 | 3.1:-52130299 | MS.gene41464:CDS |
| CCAATTGACCATGATGCTGT+TGG | 0.574111 | 3.1:-52129701 | MS.gene41464:CDS |
| GTAATGAAGAGCCTTGGAAG+TGG | 0.574422 | 3.1:+52130486 | None:intergenic |
| TAGTCTTCCATGATTTGCAA+AGG | 0.577101 | 3.1:+52131654 | None:intergenic |
| AGGGACTACTTACAGAAGAA+TGG | 0.577212 | 3.1:-52129576 | MS.gene41464:CDS |
| GTACCCGTTGGTTATATGGA+GGG | 0.577415 | 3.1:-52129595 | MS.gene41464:CDS |
| ACCAACAAGCGGTGAACCGA+AGG | 0.585729 | 3.1:+52130587 | None:intergenic |
| GAATGTTCCAAAAGGCATGT+AGG | 0.591885 | 3.1:+52130449 | None:intergenic |
| CACACAAAGACCCACTTCCA+AGG | 0.594406 | 3.1:-52130497 | MS.gene41464:CDS |
| CACGAAGTAGCTACATTCGT+TGG | 0.601103 | 3.1:-52129217 | MS.gene41464:CDS |
| TAGTATTTGGCAATAGCTAG+TGG | 0.602435 | 3.1:+52129548 | None:intergenic |
| CAGTACACATAGCAAGAATG+TGG | 0.602817 | 3.1:-52129417 | MS.gene41464:CDS |
| GAGATGAAGCCACAAAGAGA+AGG | 0.602952 | 3.1:-52129629 | MS.gene41464:CDS |
| TACTATCTTGGAAATTCTCG+TGG | 0.603011 | 3.1:-52130388 | MS.gene41464:CDS |
| TGATATCAGTTTGCAGTTAG+GGG | 0.605332 | 3.1:-52130223 | MS.gene41464:CDS |
| AAACTAAGAATGAAAATGCA+GGG | 0.608258 | 3.1:-52129754 | MS.gene41464:CDS |
| TTCGTGCCAGAAATATCTCA+GGG | 0.611265 | 3.1:+52129234 | None:intergenic |
| GAAGTAGCTACATTCGTTGG+TGG | 0.612152 | 3.1:-52129214 | MS.gene41464:CDS |
| TAGTCCCTCCATATAACCAA+CGG | 0.612991 | 3.1:+52129591 | None:intergenic |
| ATTGCCAAATACTATAGTGA+AGG | 0.613573 | 3.1:-52129539 | MS.gene41464:CDS |
| TTCTTTCTTATCGTGGACTG+AGG | 0.617095 | 3.1:+52130359 | None:intergenic |
| TAATGAAGAGCCTTGGAAGT+GGG | 0.621720 | 3.1:+52130487 | None:intergenic |
| TATTCACCTACCTGCATACG+TGG | 0.651228 | 3.1:+52130186 | None:intergenic |
| GAACCGAAGGTGATGCAGAG+TGG | 0.652177 | 3.1:+52130600 | None:intergenic |
| AATCTCCTGTCACCAACAAG+CGG | 0.657865 | 3.1:+52130576 | None:intergenic |
| AGATTAATAGTTCCAATCCA+CGG | 0.668034 | 3.1:-52130719 | MS.gene41464:CDS |
| ACTAGAGAAGTTGAAAACTG+AGG | 0.701081 | 3.1:-52131381 | MS.gene41464:intron |
| TCGTGCCAGAAATATCTCAG+GGG | 0.781520 | 3.1:+52129235 | None:intergenic |
| GGTTGTCAAAGAGAAATACG+AGG | 0.787378 | 3.1:-52129321 | MS.gene41464:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAGTATAAAAAAATTAA+GGG | - | chr3.1:52131763-52131782 | MS.gene41464:intron | 10.0% |
| !! | AAAAACTAAAATAGAAAGAA+AGG | + | chr3.1:52129166-52129185 | None:intergenic | 15.0% |
| !! | GAATGAGTATAAAAAAATTA+AGG | - | chr3.1:52131762-52131781 | MS.gene41464:intron | 15.0% |
| !! | AACACAAAAATTCAAAATGA+AGG | + | chr3.1:52129486-52129505 | None:intergenic | 20.0% |
| !! | AAGACTATGTTAATAACAAA+CGG | - | chr3.1:52131443-52131462 | MS.gene41464:CDS | 20.0% |
| !! | AATCAGACAAATAATCAAAA+AGG | + | chr3.1:52129615-52129634 | None:intergenic | 20.0% |
| !! | ACAAGTAAATGTTAGAAATA+AGG | + | chr3.1:52131094-52131113 | None:intergenic | 20.0% |
| !! | AGTGTATTATAAAAAAAGAG+AGG | - | chr3.1:52130993-52131012 | MS.gene41464:intron | 20.0% |
| !! | ATAAAAAACTCACTATTTAC+TGG | - | chr3.1:52131281-52131300 | MS.gene41464:intron | 20.0% |
| !! | ATAATCATCTAATACTGAAT+AGG | - | chr3.1:52130821-52130840 | MS.gene41464:intron | 20.0% |
| !! | TAAAAAACTCACTATTTACT+GGG | - | chr3.1:52131282-52131301 | MS.gene41464:intron | 20.0% |
| !! | TGAATAAATATTGTACAGTA+TGG | + | chr3.1:52130101-52130120 | None:intergenic | 20.0% |
| !!! | AGTAAATAGTGAGTTTTTTA+TGG | + | chr3.1:52131282-52131301 | None:intergenic | 20.0% |
| !!! | TTTTACAATTCTAGCTTTTA+AGG | - | chr3.1:52129390-52129409 | MS.gene41464:CDS | 20.0% |
| ! | AAAACTAAGAATGAAAATGC+AGG | - | chr3.1:52131199-52131218 | MS.gene41464:intron | 25.0% |
| ! | AAACTAAGAATGAAAATGCA+GGG | - | chr3.1:52131200-52131219 | MS.gene41464:intron | 25.0% |
| ! | AAGATTAAACAGTATGCTAT+AGG | - | chr3.1:52131832-52131851 | MS.gene41464:intron | 25.0% |
| ! | AAGGAAATTGTTTGAATTTG+AGG | - | chr3.1:52131660-52131679 | MS.gene41464:CDS | 25.0% |
| ! | AATAAGCTGTTTATCCAAAT+AGG | - | chr3.1:52129890-52129909 | MS.gene41464:intron | 25.0% |
| ! | ATAAGCTGTTTATCCAAATA+GGG | - | chr3.1:52129891-52129910 | MS.gene41464:intron | 25.0% |
| ! | ATATCACTGTTACATAACAT+TGG | - | chr3.1:52130315-52130334 | MS.gene41464:CDS | 25.0% |
| ! | GAAATAAGGTCATGAAAAAT+TGG | + | chr3.1:52131080-52131099 | None:intergenic | 25.0% |
| ! | GAACTATTAAGTATGTCTTA+GGG | - | chr3.1:52129719-52129738 | MS.gene41464:CDS | 25.0% |
| ! | TAGCATATGAAAACAACTTA+TGG | - | chr3.1:52129849-52129868 | MS.gene41464:intron | 25.0% |
| ! | TCATATCGTACTATGTATAT+AGG | - | chr3.1:52130153-52130172 | MS.gene41464:intron | 25.0% |
| ! | TGAACTATTAAGTATGTCTT+AGG | - | chr3.1:52129718-52129737 | MS.gene41464:CDS | 25.0% |
| !! | AATATGTTGTTTATCCAAAC+AGG | + | chr3.1:52129956-52129975 | None:intergenic | 25.0% |
| !! | AATTTGAGGAGTATGTTTAT+GGG | - | chr3.1:52131674-52131693 | MS.gene41464:CDS | 25.0% |
| !! | ATATGTTGTTTATCCAAACA+GGG | + | chr3.1:52129955-52129974 | None:intergenic | 25.0% |
| !! | TTCCAATTTTCTCTCTTAAT+AGG | - | chr3.1:52129515-52129534 | MS.gene41464:CDS | 25.0% |
| !!! | CAACATATTTTTGTAGCAAA+AGG | - | chr3.1:52129967-52129986 | MS.gene41464:intron | 25.0% |
| !!! | GGATAAACAGCTTATTTTAT+AGG | + | chr3.1:52129886-52129905 | None:intergenic | 25.0% |
| AATCAAATCAGCTTGAACAT+TGG | + | chr3.1:52129434-52129453 | None:intergenic | 30.0% | |
| AGAATTTCCAAGATAGTATC+TGG | + | chr3.1:52130564-52130583 | None:intergenic | 30.0% | |
| AGATTAATAGTTCCAATCCA+CGG | - | chr3.1:52130235-52130254 | MS.gene41464:CDS | 30.0% | |
| ATGTCATTCAATTTCTTGGA+TGG | + | chr3.1:52131142-52131161 | None:intergenic | 30.0% | |
| ATTGCCAAATACTATAGTGA+AGG | - | chr3.1:52131415-52131434 | MS.gene41464:CDS | 30.0% | |
| ATTGTTTCATAAGTGATTGC+AGG | + | chr3.1:52130207-52130226 | None:intergenic | 30.0% | |
| CAAACTCTAGTCAAAAAGAA+AGG | + | chr3.1:52129674-52129693 | None:intergenic | 30.0% | |
| CAAGAAATTGAATGACATGA+AGG | - | chr3.1:52131144-52131163 | MS.gene41464:intron | 30.0% | |
| CATGAAAAATTGGAGTTTAC+AGG | + | chr3.1:52131070-52131089 | None:intergenic | 30.0% | |
| CTTCATGTCATTCAATTTCT+TGG | + | chr3.1:52131146-52131165 | None:intergenic | 30.0% | |
| GATTTCTTCTTCTGAACTTA+AGG | - | chr3.1:52129450-52129469 | MS.gene41464:CDS | 30.0% | |
| GTCCTATTAAGAGAGAAAAT+TGG | + | chr3.1:52129520-52129539 | None:intergenic | 30.0% | |
| TACATAGTACGATATGAGTA+CGG | + | chr3.1:52130150-52130169 | None:intergenic | 30.0% | |
| TAGAGTTTGATGTGTAGATT+TGG | - | chr3.1:52129685-52129704 | MS.gene41464:CDS | 30.0% | |
| TGGAAACTTGATAAAGAAAC+TGG | - | chr3.1:52129361-52129380 | MS.gene41464:CDS | 30.0% | |
| TTGTTTCATAAGTGATTGCA+GGG | + | chr3.1:52130206-52130225 | None:intergenic | 30.0% | |
| ! | GAACTTGAATCTGTTGATTA+TGG | - | chr3.1:52130618-52130637 | MS.gene41464:CDS | 30.0% |
| ! | GAATTTGAGGAGTATGTTTA+TGG | - | chr3.1:52131673-52131692 | MS.gene41464:CDS | 30.0% |
| ! | TCTTTTTGTACCATTCAAGT+TGG | + | chr3.1:52131180-52131199 | None:intergenic | 30.0% |
| ! | TGACTATAGATTCTTGCTTT+TGG | - | chr3.1:52131569-52131588 | MS.gene41464:CDS | 30.0% |
| !! | CTTTTTGTACCATTCAAGTT+GGG | + | chr3.1:52131179-52131198 | None:intergenic | 30.0% |
| !! | GACTATAGATTCTTGCTTTT+GGG | - | chr3.1:52131570-52131589 | MS.gene41464:CDS | 30.0% |
| !! | GTTGTTTTCATATGCTATCT+TGG | + | chr3.1:52129846-52129865 | None:intergenic | 30.0% |
| !!! | TCATCTGATAGTTTTGAAGA+TGG | - | chr3.1:52129325-52129344 | MS.gene41464:CDS | 30.0% |
| AATAAGTCATGCATGGCATA+TGG | + | chr3.1:52129143-52129162 | None:intergenic | 35.0% | |
| ACCACCTTCACTATAGTATT+TGG | + | chr3.1:52131422-52131441 | None:intergenic | 35.0% | |
| ACTAGAGAAGTTGAAAACTG+AGG | - | chr3.1:52129573-52129592 | MS.gene41464:CDS | 35.0% | |
| ACTGATATCAGTTTGCAGTT+AGG | - | chr3.1:52130729-52130748 | MS.gene41464:intron | 35.0% | |
| AGAAAGGAATAAGTCATGCA+TGG | + | chr3.1:52129150-52129169 | None:intergenic | 35.0% | |
| AGTGAGATAAACACCTCTAA+TGG | + | chr3.1:52130060-52130079 | None:intergenic | 35.0% | |
| AGTTCTTCACCCTTATCAAA+AGG | + | chr3.1:52130919-52130938 | None:intergenic | 35.0% | |
| ATATCAGTTGCTAGTGAATC+TGG | + | chr3.1:52130717-52130736 | None:intergenic | 35.0% | |
| ATATGAGTACGGTACAATAC+AGG | + | chr3.1:52130139-52130158 | None:intergenic | 35.0% | |
| ATCTCTATCGTAAAGCAACA+TGG | - | chr3.1:52130655-52130674 | MS.gene41464:CDS | 35.0% | |
| CAAGTTCTTCTTTCTTATCG+TGG | + | chr3.1:52130605-52130624 | None:intergenic | 35.0% | |
| CACATGATGAATGTTCCAAA+AGG | + | chr3.1:52130516-52130535 | None:intergenic | 35.0% | |
| CACTATTTACTGGGAAAAGA+TGG | - | chr3.1:52131291-52131310 | MS.gene41464:intron | 35.0% | |
| CCAAATAGAACTACGAGATA+TGG | + | chr3.1:52130412-52130431 | None:intergenic | 35.0% | |
| CTAATGGTTAAACAAGCTCA+AGG | + | chr3.1:52130044-52130063 | None:intergenic | 35.0% | |
| CTGATATCAGTTTGCAGTTA+GGG | - | chr3.1:52130730-52130749 | MS.gene41464:intron | 35.0% | |
| GCTCGATTCAAAAAGAGATA+AGG | + | chr3.1:52130022-52130041 | None:intergenic | 35.0% | |
| GTCTGAACATTTCAAACAGT+TGG | - | chr3.1:52131465-52131484 | MS.gene41464:CDS | 35.0% | |
| GTCTGATATCATACCCTATT+TGG | + | chr3.1:52129907-52129926 | None:intergenic | 35.0% | |
| GTTCTTCACCCTTATCAAAA+GGG | + | chr3.1:52130918-52130937 | None:intergenic | 35.0% | |
| TACTATCTTGGAAATTCTCG+TGG | - | chr3.1:52130566-52130585 | MS.gene41464:CDS | 35.0% | |
| TAGTATTTGGCAATAGCTAG+TGG | + | chr3.1:52131409-52131428 | None:intergenic | 35.0% | |
| TATGAGTACGGTACAATACA+GGG | + | chr3.1:52130138-52130157 | None:intergenic | 35.0% | |
| TGAACATTTCAAACAGTTGG+AGG | - | chr3.1:52131468-52131487 | MS.gene41464:CDS | 35.0% | |
| TGAGAATCCAGATACTATCT+TGG | - | chr3.1:52130554-52130573 | MS.gene41464:CDS | 35.0% | |
| TGATATCAGTTTGCAGTTAG+GGG | - | chr3.1:52130731-52130750 | MS.gene41464:intron | 35.0% | |
| TTCTTCTTCTGAACTTAAGG+AGG | - | chr3.1:52129453-52129472 | MS.gene41464:CDS | 35.0% | |
| ! | AAGATGGTGTTGGAATTTCT+TGG | - | chr3.1:52129341-52129360 | MS.gene41464:CDS | 35.0% |
| ! | AAGCACTTGTGAGACTTTTT+AGG | - | chr3.1:52129756-52129775 | MS.gene41464:CDS | 35.0% |
| ! | ACAGAACAACCCTTTTGATA+AGG | - | chr3.1:52130906-52130925 | MS.gene41464:intron | 35.0% |
| ! | AGCAACATGGATAGATTTTC+CGG | - | chr3.1:52130668-52130687 | MS.gene41464:CDS | 35.0% |
| ! | AGCACTTGTGAGACTTTTTA+GGG | - | chr3.1:52129757-52129776 | MS.gene41464:CDS | 35.0% |
| ! | CAGAACAACCCTTTTGATAA+GGG | - | chr3.1:52130907-52130926 | MS.gene41464:intron | 35.0% |
| ! | CCATATCTCGTAGTTCTATT+TGG | - | chr3.1:52130409-52130428 | MS.gene41464:CDS | 35.0% |
| ! | GAATGACATGAAGGTACATA+TGG | - | chr3.1:52131153-52131172 | MS.gene41464:intron | 35.0% |
| ! | TAGTCTTCCATGATTTGCAA+AGG | + | chr3.1:52129303-52129322 | None:intergenic | 35.0% |
| ! | TCACTTGTGATGATGTATCT+AGG | - | chr3.1:52130075-52130094 | MS.gene41464:intron | 35.0% |
| ! | TGAGCTTGTTTAACCATTAG+AGG | - | chr3.1:52130044-52130063 | MS.gene41464:intron | 35.0% |
| ! | TTTTGTTGCAGATTTAGCAC+TGG | - | chr3.1:52129241-52129260 | MS.gene41464:CDS | 35.0% |
| !! | CATGACTAAGTTCTGAAATG+AGG | - | chr3.1:52130944-52130963 | MS.gene41464:intron | 35.0% |
| !!! | GATAGTTTTGAAGATGGTGT+TGG | - | chr3.1:52129331-52129350 | MS.gene41464:CDS | 35.0% |
| AACCGTTCCAGTTACAAGTT+CGG | + | chr3.1:52130872-52130891 | None:intergenic | 40.0% | |
| ACATTTACTTGTCCTGCAGA+AGG | - | chr3.1:52131102-52131121 | MS.gene41464:intron | 40.0% | |
| ACTTGTAACTGGAACGGTTA+AGG | - | chr3.1:52130873-52130892 | MS.gene41464:intron | 40.0% | |
| AGGGACTACTTACAGAAGAA+TGG | - | chr3.1:52131378-52131397 | MS.gene41464:intron | 40.0% | |
| ATCAAAAGGGTTGTTCTGTG+AGG | + | chr3.1:52130905-52130924 | None:intergenic | 40.0% | |
| ATTTCAAACAGTTGGAGGAG+TGG | - | chr3.1:52131473-52131492 | MS.gene41464:CDS | 40.0% | |
| CAAATGATATCACCTTCTGC+AGG | + | chr3.1:52131117-52131136 | None:intergenic | 40.0% | |
| CAATTGACCATGATGCTGTT+GGG | - | chr3.1:52131254-52131273 | MS.gene41464:intron | 40.0% | |
| CAGTACACATAGCAAGAATG+TGG | - | chr3.1:52131537-52131556 | MS.gene41464:CDS | 40.0% | |
| CTACCATCCTTTGCAAATCA+TGG | - | chr3.1:52129293-52129312 | MS.gene41464:CDS | 40.0% | |
| GCCAAATACTATAGTGAAGG+TGG | - | chr3.1:52131418-52131437 | MS.gene41464:CDS | 40.0% | |
| GGTTGTCAAAGAGAAATACG+AGG | - | chr3.1:52131633-52131652 | MS.gene41464:CDS | 40.0% | |
| GTATATAGGCTTCGCTTTCT+AGG | - | chr3.1:52130167-52130186 | MS.gene41464:intron | 40.0% | |
| TAATGAAGAGCCTTGGAAGT+GGG | + | chr3.1:52130470-52130489 | None:intergenic | 40.0% | |
| TACATATGGCCCAACTTGAA+TGG | - | chr3.1:52131167-52131186 | MS.gene41464:intron | 40.0% | |
| TAGTCCCTCCATATAACCAA+CGG | + | chr3.1:52131366-52131385 | None:intergenic | 40.0% | |
| TTCGTGCCAGAAATATCTCA+GGG | + | chr3.1:52131723-52131742 | None:intergenic | 40.0% | |
| ! | AAGAGAAATACGAGGCACTA+AGG | - | chr3.1:52131641-52131660 | MS.gene41464:CDS | 40.0% |
| ! | CTTCCATGATTTGCAAAGGA+TGG | + | chr3.1:52129299-52129318 | None:intergenic | 40.0% |
| ! | GAAGAGGCTCTTCTTTTATG+CGG | - | chr3.1:52131601-52131620 | MS.gene41464:CDS | 40.0% |
| ! | GAATGTTCCAAAAGGCATGT+AGG | + | chr3.1:52130508-52130527 | None:intergenic | 40.0% |
| ! | GTATGTTTATGGGTTGCTCA+AGG | - | chr3.1:52131684-52131703 | MS.gene41464:CDS | 40.0% |
| ! | TCTTTTATGCGGAGAGTTGA+AGG | - | chr3.1:52131612-52131631 | MS.gene41464:CDS | 40.0% |
| ! | TTCTTTCTTATCGTGGACTG+AGG | + | chr3.1:52130598-52130617 | None:intergenic | 40.0% |
| ! | TTTCGTACCCGTTGGTTATA+TGG | - | chr3.1:52131355-52131374 | MS.gene41464:intron | 40.0% |
| AAAGCTGCACCTTCTCTTTG+TGG | + | chr3.1:52131337-52131356 | None:intergenic | 45.0% | |
| AAGTTTGACACCACGTATGC+AGG | - | chr3.1:52130758-52130777 | MS.gene41464:intron | 45.0% | |
| AATCTCCTGTCACCAACAAG+CGG | + | chr3.1:52130381-52130400 | None:intergenic | 45.0% | |
| ACAGACACCGAACTTGTAAC+TGG | - | chr3.1:52130862-52130881 | MS.gene41464:intron | 45.0% | |
| ACAGTTGGAGGAGTGGTTAT+TGG | - | chr3.1:52131480-52131499 | MS.gene41464:CDS | 45.0% | |
| AGTCCCTCCATATAACCAAC+GGG | + | chr3.1:52131365-52131384 | None:intergenic | 45.0% | |
| AGTGTCCCCTGAGATATTTC+TGG | - | chr3.1:52131714-52131733 | MS.gene41464:intron | 45.0% | |
| ATTGTTACCGGACATGGTCT+TGG | - | chr3.1:52130267-52130286 | MS.gene41464:CDS | 45.0% | |
| CACCGAACTTGTAACTGGAA+CGG | - | chr3.1:52130867-52130886 | MS.gene41464:intron | 45.0% | |
| CACGAAGTAGCTACATTCGT+TGG | - | chr3.1:52131737-52131756 | MS.gene41464:intron | 45.0% | |
| CAGCATCATGGTCAATTGGT+TGG | + | chr3.1:52131252-52131271 | None:intergenic | 45.0% | |
| CCAACAGCATCATGGTCAAT+TGG | + | chr3.1:52131256-52131275 | None:intergenic | 45.0% | |
| CCAATTGACCATGATGCTGT+TGG | - | chr3.1:52131253-52131272 | MS.gene41464:intron | 45.0% | |
| CGATCTGTAATGAAGAGCCT+TGG | + | chr3.1:52130477-52130496 | None:intergenic | 45.0% | |
| CTTCGTGCCAGAAATATCTC+AGG | + | chr3.1:52131724-52131743 | None:intergenic | 45.0% | |
| GAAGTAGCTACATTCGTTGG+TGG | - | chr3.1:52131740-52131759 | MS.gene41464:intron | 45.0% | |
| GAGATGAAGCCACAAAGAGA+AGG | - | chr3.1:52131325-52131344 | MS.gene41464:intron | 45.0% | |
| GTAATGAAGAGCCTTGGAAG+TGG | + | chr3.1:52130471-52130490 | None:intergenic | 45.0% | |
| TATGGAACCCAACAGCATCA+TGG | + | chr3.1:52131264-52131283 | None:intergenic | 45.0% | |
| TATTCACCTACCTGCATACG+TGG | + | chr3.1:52130771-52130790 | None:intergenic | 45.0% | |
| TCGTGCCAGAAATATCTCAG+GGG | + | chr3.1:52131722-52131741 | None:intergenic | 45.0% | |
| ! | ACCAGTACCTACATGCCTTT+TGG | - | chr3.1:52130498-52130517 | MS.gene41464:CDS | 45.0% |
| ! | CTTTTGGGCACATGTTGAAG+AGG | - | chr3.1:52131585-52131604 | MS.gene41464:CDS | 45.0% |
| ! | GTACCCGTTGGTTATATGGA+GGG | - | chr3.1:52131359-52131378 | MS.gene41464:intron | 45.0% |
| ! | GTCAAGTTTTCAGCTTGAGC+CGG | + | chr3.1:52130690-52130709 | None:intergenic | 45.0% |
| ! | TCCAAAAGGCATGTAGGTAC+TGG | + | chr3.1:52130502-52130521 | None:intergenic | 45.0% |
| !! | AGTTCGGTGTCTGTTGTCAA+TGG | + | chr3.1:52130856-52130875 | None:intergenic | 45.0% |
| AATCAACGCAGTCCGTGGAT+TGG | + | chr3.1:52130250-52130269 | None:intergenic | 50.0% | |
| CACACAAAGACCCACTTCCA+AGG | - | chr3.1:52130457-52130476 | MS.gene41464:CDS | 50.0% | |
| CAGACTCTGTCCACACACTA+TGG | - | chr3.1:52129922-52129941 | MS.gene41464:intron | 50.0% | |
| CGGTGTCTGTTGTCAATGGA+GGG | + | chr3.1:52130852-52130871 | None:intergenic | 50.0% | |
| CTTGGAAATTCTCGTGGCGT+TGG | - | chr3.1:52130572-52130591 | MS.gene41464:CDS | 50.0% | |
| GTAACAATCAACGCAGTCCG+TGG | + | chr3.1:52130255-52130274 | None:intergenic | 50.0% | |
| TGATCCTCCAAGACCATGTC+CGG | + | chr3.1:52130277-52130296 | None:intergenic | 50.0% | |
| TGTCCACACACTATGGCGTA+TGG | - | chr3.1:52129929-52129948 | MS.gene41464:intron | 50.0% | |
| TTGACACCACGTATGCAGGT+AGG | - | chr3.1:52130762-52130781 | MS.gene41464:intron | 50.0% | |
| ! | CGTACCCGTTGGTTATATGG+AGG | - | chr3.1:52131358-52131377 | MS.gene41464:intron | 50.0% |
| ! | TCGGTGTCTGTTGTCAATGG+AGG | + | chr3.1:52130853-52130872 | None:intergenic | 50.0% |
| !! | CGGACTGCGTTGATTGTTAC+CGG | - | chr3.1:52130255-52130274 | MS.gene41464:CDS | 50.0% |
| !! | GCGTTGATTGTTACCGGACA+TGG | - | chr3.1:52130261-52130280 | MS.gene41464:CDS | 50.0% |
| ACCAACAAGCGGTGAACCGA+AGG | + | chr3.1:52130370-52130389 | None:intergenic | 55.0% | |
| ACCTTCGGTTCACCGCTTGT+TGG | - | chr3.1:52130366-52130385 | MS.gene41464:CDS | 55.0% | |
| CGTCCACTCTGCATCACCTT+CGG | - | chr3.1:52130351-52130370 | MS.gene41464:CDS | 55.0% | |
| CTATGGCGTATGGCCCTGTT+TGG | - | chr3.1:52129939-52129958 | MS.gene41464:intron | 55.0% | |
| GAACCGAAGGTGATGCAGAG+TGG | + | chr3.1:52130357-52130376 | None:intergenic | 55.0% | |
| ! | GTGCAGCTTTTCGTACCCGT+TGG | - | chr3.1:52131347-52131366 | MS.gene41464:intron | 55.0% |
| ! | GTTACCGGACATGGTCTTGG+AGG | - | chr3.1:52130270-52130289 | MS.gene41464:CDS | 55.0% |
| !! | GTTCACCGCTTGTTGGTGAC+AGG | - | chr3.1:52130373-52130392 | MS.gene41464:CDS | 55.0% |
| GGGCCATACGCCATAGTGTG+TGG | + | chr3.1:52129935-52129954 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 52129103 | 52131873 | 52129103 | ID=MS.gene41464 |
| chr3.1 | mRNA | 52129103 | 52131873 | 52129103 | ID=MS.gene41464.t1;Parent=MS.gene41464 |
| chr3.1 | exon | 52131857 | 52131873 | 52131857 | ID=MS.gene41464.t1.exon1;Parent=MS.gene41464.t1 |
| chr3.1 | CDS | 52131857 | 52131873 | 52131857 | ID=cds.MS.gene41464.t1;Parent=MS.gene41464.t1 |
| chr3.1 | exon | 52131382 | 52131724 | 52131382 | ID=MS.gene41464.t1.exon2;Parent=MS.gene41464.t1 |
| chr3.1 | CDS | 52131382 | 52131724 | 52131382 | ID=cds.MS.gene41464.t1;Parent=MS.gene41464.t1 |
| chr3.1 | exon | 52130197 | 52130739 | 52130197 | ID=MS.gene41464.t1.exon3;Parent=MS.gene41464.t1 |
| chr3.1 | CDS | 52130197 | 52130739 | 52130197 | ID=cds.MS.gene41464.t1;Parent=MS.gene41464.t1 |
| chr3.1 | exon | 52129103 | 52129855 | 52129103 | ID=MS.gene41464.t1.exon4;Parent=MS.gene41464.t1 |
| chr3.1 | CDS | 52129103 | 52129855 | 52129103 | ID=cds.MS.gene41464.t1;Parent=MS.gene41464.t1 |
| Gene Sequence |
| Protein sequence |
