Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42293.t1 | KEH36225.1 | 99.2 | 262 | 2 | 0 | 1 | 262 | 117 | 378 | 4.70E-139 | 503.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42293.t1 | A8MRV9 | 66.4 | 250 | 83 | 1 | 1 | 250 | 102 | 350 | 1.9e-88 | 327.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42293.t1 | A0A072VDH8 | 99.2 | 262 | 2 | 0 | 1 | 262 | 117 | 378 | 3.4e-139 | 503.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene42293 | -0.806117 | 9.61E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene42293 | -0.811688 | 6.18E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene42293 | -0.832144 | 1.12E-55 | -1.69E-46 |
| MS.gene050170 | MS.gene42293 | -0.802438 | 5.61E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene42293 | -0.808289 | 3.33E-50 | -1.69E-46 |
| MS.gene050577 | MS.gene42293 | -0.805912 | 1.06E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene42293 | -0.802981 | 4.34E-49 | -1.69E-46 |
| MS.gene050699 | MS.gene42293 | -0.816204 | 6.24E-52 | -1.69E-46 |
| MS.gene050986 | MS.gene42293 | -0.81521 | 1.04E-51 | -1.69E-46 |
| MS.gene051127 | MS.gene42293 | 0.801605 | 8.32E-49 | -1.69E-46 |
| MS.gene052482 | MS.gene42293 | -0.805523 | 1.28E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene42293 | -0.809722 | 1.64E-50 | -1.69E-46 |
| MS.gene052503 | MS.gene42293 | -0.808444 | 3.09E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene42293 | -0.804497 | 2.10E-49 | -1.69E-46 |
| MS.gene052825 | MS.gene42293 | -0.80235 | 5.85E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene42293 | 0.810704 | 1.01E-50 | -1.69E-46 |
| MS.gene053480 | MS.gene42293 | -0.822121 | 2.81E-53 | -1.69E-46 |
| MS.gene053549 | MS.gene42293 | 0.825989 | 3.47E-54 | -1.69E-46 |
| MS.gene053574 | MS.gene42293 | -0.80471 | 1.90E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene42293 | -0.82205 | 2.91E-53 | -1.69E-46 |
| MS.gene055362 | MS.gene42293 | -0.829499 | 4.98E-55 | -1.69E-46 |
| MS.gene055502 | MS.gene42293 | -0.812245 | 4.67E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene42293 | -0.819742 | 9.90E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene42293 | -0.818939 | 1.51E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene42293 | -0.812372 | 4.38E-51 | -1.69E-46 |
| MS.gene05837 | MS.gene42293 | -0.805844 | 1.10E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene42293 | -0.818165 | 2.26E-52 | -1.69E-46 |
| MS.gene058544 | MS.gene42293 | -0.804565 | 2.03E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene42293 | -0.819154 | 1.35E-52 | -1.69E-46 |
| MS.gene059023 | MS.gene42293 | -0.802107 | 6.56E-49 | -1.69E-46 |
| MS.gene059223 | MS.gene42293 | 0.802232 | 6.19E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene42293 | -0.81664 | 4.98E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene42293 | -0.829626 | 4.63E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42293.t1 | MTR_3g112530 | 99.237 | 262 | 2 | 0 | 1 | 262 | 117 | 378 | 0.0 | 524 |
| MS.gene42293.t1 | MTR_4g049640 | 69.231 | 247 | 75 | 1 | 2 | 248 | 120 | 365 | 2.08e-114 | 333 |
| MS.gene42293.t1 | MTR_4g132400 | 56.078 | 255 | 110 | 2 | 2 | 255 | 114 | 367 | 5.05e-89 | 268 |
| MS.gene42293.t1 | MTR_4g101880 | 44.231 | 260 | 138 | 4 | 2 | 257 | 252 | 508 | 1.02e-64 | 211 |
| MS.gene42293.t1 | MTR_0549s0020 | 43.629 | 259 | 139 | 4 | 2 | 257 | 231 | 485 | 3.14e-64 | 209 |
| MS.gene42293.t1 | MTR_6g034030 | 42.857 | 259 | 141 | 4 | 2 | 257 | 303 | 557 | 4.88e-63 | 208 |
| MS.gene42293.t1 | MTR_6g045200 | 43.243 | 259 | 140 | 4 | 2 | 257 | 294 | 548 | 5.73e-63 | 207 |
| MS.gene42293.t1 | MTR_6g034030 | 48.023 | 177 | 90 | 2 | 2 | 178 | 303 | 477 | 2.18e-50 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42293.t1 | AT1G62262 | 65.613 | 253 | 86 | 1 | 1 | 253 | 102 | 353 | 1.83e-119 | 346 |
| MS.gene42293.t1 | AT1G62280 | 64.314 | 255 | 89 | 2 | 2 | 256 | 111 | 363 | 5.90e-118 | 343 |
| MS.gene42293.t1 | AT4G27970 | 44.444 | 261 | 134 | 5 | 2 | 257 | 60 | 314 | 2.39e-67 | 213 |
| MS.gene42293.t1 | AT4G27970 | 44.444 | 261 | 134 | 5 | 2 | 257 | 60 | 314 | 2.39e-67 | 213 |
| MS.gene42293.t1 | AT5G24030 | 44.444 | 261 | 134 | 5 | 2 | 257 | 324 | 578 | 1.13e-65 | 216 |
| MS.gene42293.t1 | AT4G27970 | 44.444 | 261 | 134 | 5 | 2 | 257 | 209 | 463 | 1.60e-65 | 213 |
| MS.gene42293.t1 | AT4G27970 | 44.444 | 261 | 134 | 5 | 2 | 257 | 209 | 463 | 1.60e-65 | 213 |
| MS.gene42293.t1 | AT1G12480 | 45.211 | 261 | 135 | 5 | 2 | 257 | 254 | 511 | 6.25e-59 | 196 |
| MS.gene42293.t1 | AT5G24030 | 48.649 | 185 | 89 | 3 | 2 | 184 | 324 | 504 | 8.03e-52 | 176 |
| MS.gene42293.t1 | AT4G27970 | 49.162 | 179 | 85 | 3 | 2 | 178 | 209 | 383 | 1.40e-49 | 168 |
| MS.gene42293.t1 | AT4G27970 | 49.162 | 179 | 85 | 3 | 2 | 178 | 209 | 383 | 1.40e-49 | 168 |
Find 62 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTACTTATTTAATTCTA+TGG | 0.220811 | 3.2:+89818755 | MS.gene42293:CDS |
| ATTAGGGATGGTGCATTATT+TGG | 0.229252 | 3.2:+89818966 | MS.gene42293:CDS |
| TTTATCGGTAATAGGGAATT+TGG | 0.236056 | 3.2:+89818885 | MS.gene42293:CDS |
| ACAAGTCATTTATCGGTAAT+AGG | 0.252404 | 3.2:+89818877 | MS.gene42293:CDS |
| AGAGAATGAGCATTAGAATA+TGG | 0.254966 | 3.2:-89820619 | None:intergenic |
| AATTAAATAAGTAATGGTTT+TGG | 0.294154 | 3.2:-89818749 | None:intergenic |
| GTTGAATTAAACAGGTTTGC+AGG | 0.323138 | 3.2:+89820474 | MS.gene42293:intron |
| TTCTTGTTCTTTGCAGCACC+TGG | 0.340908 | 3.2:+89819060 | MS.gene42293:CDS |
| GTTCTCGACGTTAAAATTTA+CGG | 0.348977 | 3.2:+89818802 | MS.gene42293:CDS |
| CCAGTGACATGAAGAGGAAT+AGG | 0.350256 | 3.2:-89819155 | None:intergenic |
| AGCACCTGGTGTGGCTAGTC+TGG | 0.355273 | 3.2:+89819074 | MS.gene42293:CDS |
| CAAGTCATTTATCGGTAATA+GGG | 0.357344 | 3.2:+89818878 | MS.gene42293:CDS |
| AGCGCAAGCTGCAGCAGAAA+TGG | 0.373631 | 3.2:+89818912 | MS.gene42293:CDS |
| CTTGCAATGGGATCGTTATC+TGG | 0.374425 | 3.2:-89820710 | None:intergenic |
| GCCATAGCAAGTACGGTAAC+AGG | 0.385140 | 3.2:-89820557 | None:intergenic |
| GCAAAGAACAAGAAGAAAAC+TGG | 0.389582 | 3.2:-89819051 | None:intergenic |
| TTCTCATAGATCTCTTGAAT+AGG | 0.405405 | 3.2:-89820502 | None:intergenic |
| CTGGTGTGGCTAGTCTGGCT+TGG | 0.416273 | 3.2:+89819079 | MS.gene42293:CDS |
| TACTTATTTAATTCTATGGT+GGG | 0.421001 | 3.2:+89818759 | MS.gene42293:CDS |
| TACGGTCAGTGGTTTACTAA+AGG | 0.421425 | 3.2:+89818820 | MS.gene42293:CDS |
| TCTCATAGATCTCTTGAATA+GGG | 0.431380 | 3.2:-89820501 | None:intergenic |
| ACGGTCAGTGGTTTACTAAA+GGG | 0.432203 | 3.2:+89818821 | MS.gene42293:CDS |
| TATTCTAATGCTCATTCTCT+TGG | 0.436966 | 3.2:+89820622 | MS.gene42293:CDS |
| TCCTGTTACCGTACTTGCTA+TGG | 0.437754 | 3.2:+89820556 | MS.gene42293:CDS |
| GAATCCGACAAGTCATTTAT+CGG | 0.442075 | 3.2:+89818870 | MS.gene42293:CDS |
| CTGGCTTGGGAATCTATTGT+TGG | 0.443643 | 3.2:+89819093 | MS.gene42293:CDS |
| TGGTGTGGCTAGTCTGGCTT+GGG | 0.445650 | 3.2:+89819080 | MS.gene42293:CDS |
| CCTATTCCTCTTCATGTCAC+TGG | 0.453775 | 3.2:+89819155 | MS.gene42293:CDS |
| ATTACCGATAAATGACTTGT+CGG | 0.460048 | 3.2:-89818874 | None:intergenic |
| GAGAATGAGCATTAGAATAT+GGG | 0.464878 | 3.2:-89820618 | None:intergenic |
| GCGCAAGCTGCAGCAGAAAT+GGG | 0.477434 | 3.2:+89818913 | MS.gene42293:CDS |
| ATCGTCTTCCTGCGTTGTTA+AGG | 0.478539 | 3.2:+89819028 | MS.gene42293:CDS |
| ACACTTTATCAAAGGTTGTC+TGG | 0.479220 | 3.2:+89819000 | MS.gene42293:CDS |
| TCGGTAATAGGGAATTTGGT+TGG | 0.484237 | 3.2:+89818889 | MS.gene42293:CDS |
| CCATAGAATTAAATAAGTAA+TGG | 0.499411 | 3.2:-89818755 | None:intergenic |
| AACAATGAGGATGCTTGCAA+TGG | 0.505203 | 3.2:-89820723 | None:intergenic |
| ACGTTAAAATTTACGGTCAG+TGG | 0.514110 | 3.2:+89818809 | MS.gene42293:CDS |
| ATAGATCTCTTGAATAGGGC+TGG | 0.514231 | 3.2:-89820497 | None:intergenic |
| CAGTGACATGAAGAGGAATA+GGG | 0.514535 | 3.2:-89819154 | None:intergenic |
| TGTAGAAGCCATAGCAAGTA+CGG | 0.530020 | 3.2:-89820564 | None:intergenic |
| ACAATGAGGATGCTTGCAAT+GGG | 0.531962 | 3.2:-89820722 | None:intergenic |
| AATAGAAACCATGAAATCCA+TGG | 0.536211 | 3.2:-89818700 | None:intergenic |
| TTACTTATTTAATTCTATGG+TGG | 0.536757 | 3.2:+89818758 | MS.gene42293:CDS |
| AAGGTTTAATGTTGCATGGT+GGG | 0.544626 | 3.2:+89820523 | MS.gene42293:CDS |
| TATATACCAGTGACATGAAG+AGG | 0.567022 | 3.2:-89819161 | None:intergenic |
| AAGCTGCAGCAGAAATGGGT+TGG | 0.584214 | 3.2:+89818917 | MS.gene42293:CDS |
| AGCAAGTACGGTAACAGGAA+AGG | 0.591295 | 3.2:-89820552 | None:intergenic |
| TGTTTGTGACACTTTATCAA+AGG | 0.592867 | 3.2:+89818992 | MS.gene42293:CDS |
| TATTCAAGAGATCTATGAGA+AGG | 0.595617 | 3.2:+89820504 | MS.gene42293:CDS |
| TTTAACGTCGAGAACAACCA+CGG | 0.596366 | 3.2:-89818794 | None:intergenic |
| GTTCTTTGCAGCACCTGGTG+TGG | 0.596453 | 3.2:+89819065 | MS.gene42293:CDS |
| CAAGCCAGACTAGCCACACC+AGG | 0.597287 | 3.2:-89819078 | None:intergenic |
| GAAGAATTCTTACACCATGT+AGG | 0.606055 | 3.2:+89818658 | MS.gene42293:CDS |
| AGTGGTTTACTAAAGGGAAG+AGG | 0.608283 | 3.2:+89818827 | MS.gene42293:CDS |
| AATAAATGAATTAAACAATG+AGG | 0.610002 | 3.2:-89820736 | None:intergenic |
| AATTATGCACAACAAGTCAA+AGG | 0.620636 | 3.2:+89820587 | MS.gene42293:CDS |
| TGAGAAGGTTTAATGTTGCA+TGG | 0.624928 | 3.2:+89820519 | MS.gene42293:CDS |
| AAAGATAGTTAACTCCTACA+TGG | 0.643665 | 3.2:-89818672 | None:intergenic |
| TTAACGTCGAGAACAACCAC+GGG | 0.646771 | 3.2:-89818793 | None:intergenic |
| CTTTATCAAAGGTTGTCTGG+TGG | 0.678296 | 3.2:+89819003 | MS.gene42293:CDS |
| AAAACTGGCCTTAACAACGC+AGG | 0.680269 | 3.2:-89819036 | None:intergenic |
| GAAGGTTTAATGTTGCATGG+TGG | 0.712532 | 3.2:+89820522 | MS.gene42293:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGTAACTTAATTAATTATT+AGG | - | chr3.2:89820409-89820428 | None:intergenic | 10.0% |
| !! | TAAATATTAATCAATATTTC+AGG | - | chr3.2:89820448-89820467 | None:intergenic | 10.0% |
| !! | TATTTAATATTTCAAAATTG+AGG | + | chr3.2:89819510-89819529 | MS.gene42293:intron | 10.0% |
| !!! | AATTAGTATTTTGAATTATA+TGG | + | chr3.2:89820216-89820235 | MS.gene42293:intron | 10.0% |
| !! | AAATAAATCATTATCTTCAT+AGG | - | chr3.2:89819491-89819510 | None:intergenic | 15.0% |
| !! | AACAATTTATAATATAGTCA+TGG | + | chr3.2:89819375-89819394 | MS.gene42293:intron | 15.0% |
| !! | AATAAATCATTATCTTCATA+GGG | - | chr3.2:89819490-89819509 | None:intergenic | 15.0% |
| !! | TAATTTATGTTGAATTAAAC+AGG | + | chr3.2:89820466-89820485 | MS.gene42293:intron | 15.0% |
| !! | TGTACCAAAAAAAAAAAATA+AGG | - | chr3.2:89820055-89820074 | None:intergenic | 15.0% |
| !!! | AATAAATGATGATTTTGTAA+AGG | - | chr3.2:89819259-89819278 | None:intergenic | 15.0% |
| !!! | AATTAAATAAGTAATGGTTT+TGG | - | chr3.2:89818752-89818771 | None:intergenic | 15.0% |
| !!! | ATTAAATAAGTAATGGTTTT+GGG | - | chr3.2:89818751-89818770 | None:intergenic | 15.0% |
| !!! | TATAAAGTCACTTATAATTT+TGG | + | chr3.2:89819407-89819426 | MS.gene42293:intron | 15.0% |
| !!! | TTTTTTTTTTTTGGTACAAA+TGG | + | chr3.2:89820057-89820076 | MS.gene42293:intron | 15.0% |
| !! | AAATTCAAACTTATCAATTG+AGG | - | chr3.2:89820263-89820282 | None:intergenic | 20.0% |
| !! | AACAACTACAGTTTAAATTA+GGG | - | chr3.2:89819442-89819461 | None:intergenic | 20.0% |
| !! | ATCATCATTTATTAATGATG+TGG | + | chr3.2:89819266-89819285 | MS.gene42293:intron | 20.0% |
| !! | CATGTACTTATAAATTGATA+GGG | - | chr3.2:89819967-89819986 | None:intergenic | 20.0% |
| !! | CCATAGAATTAAATAAGTAA+TGG | - | chr3.2:89818758-89818777 | None:intergenic | 20.0% |
| !! | CCATTACTTATTTAATTCTA+TGG | + | chr3.2:89818755-89818774 | MS.gene42293:CDS | 20.0% |
| !! | TACTTATTTAATTCTATGGT+GGG | + | chr3.2:89818759-89818778 | MS.gene42293:CDS | 20.0% |
| !! | TTACTTATTTAATTCTATGG+TGG | + | chr3.2:89818758-89818777 | MS.gene42293:CDS | 20.0% |
| !!! | AGGTCCTTATTTTTTTTTTT+TGG | + | chr3.2:89820048-89820067 | MS.gene42293:intron | 20.0% |
| !!! | TTTTACAAAAAAATTCTGGT+AGG | + | chr3.2:89819920-89819939 | MS.gene42293:intron | 20.0% |
| !!! | TTTTACAAAGTATGATAGAA+AGG | + | chr3.2:89819322-89819341 | MS.gene42293:intron | 20.0% |
| ! | CAACAACTACAGTTTAAATT+AGG | - | chr3.2:89819443-89819462 | None:intergenic | 25.0% |
| ! | CAAGTAACTGTCAATTAATA+AGG | - | chr3.2:89820089-89820108 | None:intergenic | 25.0% |
| ! | GCATGTACTTATAAATTGAT+AGG | - | chr3.2:89819968-89819987 | None:intergenic | 25.0% |
| ! | TCAACAAAGTTGTCATTAAA+TGG | - | chr3.2:89819724-89819743 | None:intergenic | 25.0% |
| ! | TCATTTCTATTAGACAAAAC+AGG | + | chr3.2:89819876-89819895 | MS.gene42293:intron | 25.0% |
| ! | TTAATCTCTACATAGAGAAT+AGG | + | chr3.2:89820298-89820317 | MS.gene42293:intron | 25.0% |
| ! | TTGATAAGTTTGAATTTACC+CGG | + | chr3.2:89820266-89820285 | MS.gene42293:intron | 25.0% |
| !! | GGCTTTTTACAAAAAAATTC+TGG | + | chr3.2:89819916-89819935 | MS.gene42293:intron | 25.0% |
| !!! | TAGAGATTAATCTTTAGAAC+CGG | - | chr3.2:89820288-89820307 | None:intergenic | 25.0% |
| !!! | TTTTTTTGGTACAAATGGAA+AGG | + | chr3.2:89820062-89820081 | MS.gene42293:intron | 25.0% |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr3.2:89819775-89819794 | MS.gene42293:intron | 30.0% | |
| AAAGATAGTTAACTCCTACA+TGG | - | chr3.2:89818675-89818694 | None:intergenic | 30.0% | |
| AATAGAAACCATGAAATCCA+TGG | - | chr3.2:89818703-89818722 | None:intergenic | 30.0% | |
| AATTATGCACAACAAGTCAA+AGG | + | chr3.2:89820587-89820606 | MS.gene42293:CDS | 30.0% | |
| ACAAGTCATTTATCGGTAAT+AGG | + | chr3.2:89818877-89818896 | MS.gene42293:CDS | 30.0% | |
| ACTTATCAATTGAGGTTAAG+TGG | - | chr3.2:89820255-89820274 | None:intergenic | 30.0% | |
| AGAGAATGAGCATTAGAATA+TGG | - | chr3.2:89820622-89820641 | None:intergenic | 30.0% | |
| CAAGTCATTTATCGGTAATA+GGG | + | chr3.2:89818878-89818897 | MS.gene42293:CDS | 30.0% | |
| GAGAATGAGCATTAGAATAT+GGG | - | chr3.2:89820621-89820640 | None:intergenic | 30.0% | |
| GTTCTCGACGTTAAAATTTA+CGG | + | chr3.2:89818802-89818821 | MS.gene42293:CDS | 30.0% | |
| TAGATAACATGACTTGACAT+TGG | - | chr3.2:89820168-89820187 | None:intergenic | 30.0% | |
| TAGGGACATTCTATATTGTA+CGG | - | chr3.2:89819949-89819968 | None:intergenic | 30.0% | |
| TATTCAAGAGATCTATGAGA+AGG | + | chr3.2:89820504-89820523 | MS.gene42293:CDS | 30.0% | |
| TATTCTAATGCTCATTCTCT+TGG | + | chr3.2:89820622-89820641 | MS.gene42293:CDS | 30.0% | |
| TCTCATAGATCTCTTGAATA+GGG | - | chr3.2:89820504-89820523 | None:intergenic | 30.0% | |
| TGTTTGTGACACTTTATCAA+AGG | + | chr3.2:89818992-89819011 | MS.gene42293:CDS | 30.0% | |
| TTCTCATAGATCTCTTGAAT+AGG | - | chr3.2:89820505-89820524 | None:intergenic | 30.0% | |
| TTTATCGGTAATAGGGAATT+TGG | + | chr3.2:89818885-89818904 | MS.gene42293:CDS | 30.0% | |
| ! | ATTACCGATAAATGACTTGT+CGG | - | chr3.2:89818877-89818896 | None:intergenic | 30.0% |
| ! | CTTGATTTTGTGCTGTAATT+TGG | + | chr3.2:89820010-89820029 | MS.gene42293:intron | 30.0% |
| !! | AGAGATTAATCTTTAGAACC+GGG | - | chr3.2:89820287-89820306 | None:intergenic | 30.0% |
| !! | CTGTGTGTTTGTTTTCATTA+GGG | + | chr3.2:89818950-89818969 | MS.gene42293:CDS | 30.0% |
| !!! | AACCACTTTTTGACAACTTT+TGG | - | chr3.2:89819847-89819866 | None:intergenic | 30.0% |
| AAGGTTTAATGTTGCATGGT+GGG | + | chr3.2:89820523-89820542 | MS.gene42293:CDS | 35.0% | |
| ACACTTTATCAAAGGTTGTC+TGG | + | chr3.2:89819000-89819019 | MS.gene42293:CDS | 35.0% | |
| ACGTTAAAATTTACGGTCAG+TGG | + | chr3.2:89818809-89818828 | MS.gene42293:CDS | 35.0% | |
| AGAGAGAAAAAGGAAAAGAG+AGG | + | chr3.2:89819785-89819804 | MS.gene42293:intron | 35.0% | |
| AGCAAGAAGTGAGAAAAACA+AGG | - | chr3.2:89819750-89819769 | None:intergenic | 35.0% | |
| ATTAGGGATGGTGCATTATT+TGG | + | chr3.2:89818966-89818985 | MS.gene42293:CDS | 35.0% | |
| GAAGAATTCTTACACCATGT+AGG | + | chr3.2:89818658-89818677 | MS.gene42293:CDS | 35.0% | |
| GAATCCGACAAGTCATTTAT+CGG | + | chr3.2:89818870-89818889 | MS.gene42293:CDS | 35.0% | |
| GCAAAGAACAAGAAGAAAAC+TGG | - | chr3.2:89819054-89819073 | None:intergenic | 35.0% | |
| GTAAACCTTGTCATTACTTG+AGG | - | chr3.2:89819563-89819582 | None:intergenic | 35.0% | |
| GTCCAAAAGTTGTCAAAAAG+TGG | + | chr3.2:89819842-89819861 | MS.gene42293:intron | 35.0% | |
| GTTGAATTAAACAGGTTTGC+AGG | + | chr3.2:89820474-89820493 | MS.gene42293:intron | 35.0% | |
| TATATACCAGTGACATGAAG+AGG | - | chr3.2:89819164-89819183 | None:intergenic | 35.0% | |
| TGAGAAGGTTTAATGTTGCA+TGG | + | chr3.2:89820519-89820538 | MS.gene42293:CDS | 35.0% | |
| TGTAATTTGGACGTACAAGA+TGG | + | chr3.2:89820023-89820042 | MS.gene42293:intron | 35.0% | |
| TTCTTGCTGGTCAAAAACAA+TGG | + | chr3.2:89819762-89819781 | MS.gene42293:intron | 35.0% | |
| ! | TTAACTATCTTTTCGCTCCA+TGG | + | chr3.2:89818683-89818702 | MS.gene42293:CDS | 35.0% |
| !! | AAAGCCAATAGTGTTGACTA+AGG | - | chr3.2:89819902-89819921 | None:intergenic | 35.0% |
| !! | GCTGTGTGTTTGTTTTCATT+AGG | + | chr3.2:89818949-89818968 | MS.gene42293:CDS | 35.0% |
| !! | GTGTTTGTTTTCATTAGGGA+TGG | + | chr3.2:89818954-89818973 | MS.gene42293:CDS | 35.0% |
| !! | TTGTTTTTCTCACTTCTTGC+TGG | + | chr3.2:89819749-89819768 | MS.gene42293:intron | 35.0% |
| !!! | AATTCTATGGTGGGTTTTCA+CGG | + | chr3.2:89818768-89818787 | MS.gene42293:CDS | 35.0% |
| !!! | GAAGAGGTCATTTTTAACGA+CGG | + | chr3.2:89818843-89818862 | MS.gene42293:CDS | 35.0% |
| AACAATGAGGATGCTTGCAA+TGG | - | chr3.2:89820726-89820745 | None:intergenic | 40.0% | |
| ACAATGAGGATGCTTGCAAT+GGG | - | chr3.2:89820725-89820744 | None:intergenic | 40.0% | |
| ACATGACTTGACATTGGAGT+TGG | - | chr3.2:89820162-89820181 | None:intergenic | 40.0% | |
| ACGGTCAGTGGTTTACTAAA+GGG | + | chr3.2:89818821-89818840 | MS.gene42293:CDS | 40.0% | |
| AGTGGTTTACTAAAGGGAAG+AGG | + | chr3.2:89818827-89818846 | MS.gene42293:CDS | 40.0% | |
| ATAGATCTCTTGAATAGGGC+TGG | - | chr3.2:89820500-89820519 | None:intergenic | 40.0% | |
| ATTGGAGTTGGACAGATTGT+AGG | - | chr3.2:89820150-89820169 | None:intergenic | 40.0% | |
| CAGTGACATGAAGAGGAATA+GGG | - | chr3.2:89819157-89819176 | None:intergenic | 40.0% | |
| CTCTTCCTCAAGTAATGACA+AGG | + | chr3.2:89819555-89819574 | MS.gene42293:intron | 40.0% | |
| CTTTATCAAAGGTTGTCTGG+TGG | + | chr3.2:89819003-89819022 | MS.gene42293:CDS | 40.0% | |
| GAAGGTTTAATGTTGCATGG+TGG | + | chr3.2:89820522-89820541 | MS.gene42293:CDS | 40.0% | |
| GTAATGACAAGGTTTACAGC+TGG | + | chr3.2:89819566-89819585 | MS.gene42293:intron | 40.0% | |
| GTTGGACAGATTGTAGGAAA+AGG | - | chr3.2:89820144-89820163 | None:intergenic | 40.0% | |
| TACGGTCAGTGGTTTACTAA+AGG | + | chr3.2:89818820-89818839 | MS.gene42293:CDS | 40.0% | |
| TCGGTAATAGGGAATTTGGT+TGG | + | chr3.2:89818889-89818908 | MS.gene42293:CDS | 40.0% | |
| TGTAGAAGCCATAGCAAGTA+CGG | - | chr3.2:89820567-89820586 | None:intergenic | 40.0% | |
| TTTAACGTCGAGAACAACCA+CGG | - | chr3.2:89818797-89818816 | None:intergenic | 40.0% | |
| TTTGGACGTACAAGATGGAA+AGG | + | chr3.2:89820028-89820047 | MS.gene42293:intron | 40.0% | |
| ! | TTTTCGCTCCATGGATTTCA+TGG | + | chr3.2:89818692-89818711 | MS.gene42293:CDS | 40.0% |
| !! | GGACAAAAAGAAGAGCATCT+TGG | - | chr3.2:89819136-89819155 | None:intergenic | 40.0% |
| !!! | ATGGTTTTGGGAGCTATGAA+TGG | - | chr3.2:89818739-89818758 | None:intergenic | 40.0% |
| AGCAAGTACGGTAACAGGAA+AGG | - | chr3.2:89820555-89820574 | None:intergenic | 45.0% | |
| ATCGTCTTCCTGCGTTGTTA+AGG | + | chr3.2:89819028-89819047 | MS.gene42293:CDS | 45.0% | |
| CAGGCCTTAGTCAACACTAT+TGG | + | chr3.2:89819895-89819914 | MS.gene42293:intron | 45.0% | |
| CCAGTGACATGAAGAGGAAT+AGG | - | chr3.2:89819158-89819177 | None:intergenic | 45.0% | |
| CCTATTCCTCTTCATGTCAC+TGG | + | chr3.2:89819155-89819174 | MS.gene42293:CDS | 45.0% | |
| CTTGCAATGGGATCGTTATC+TGG | - | chr3.2:89820713-89820732 | None:intergenic | 45.0% | |
| TTAACGTCGAGAACAACCAC+GGG | - | chr3.2:89818796-89818815 | None:intergenic | 45.0% | |
| TTCTTGTTCTTTGCAGCACC+TGG | + | chr3.2:89819060-89819079 | MS.gene42293:CDS | 45.0% | |
| ! | TCCTGTTACCGTACTTGCTA+TGG | + | chr3.2:89820556-89820575 | MS.gene42293:CDS | 45.0% |
| !! | AAAACTGGCCTTAACAACGC+AGG | - | chr3.2:89819039-89819058 | None:intergenic | 45.0% |
| !! | CTGGCTTGGGAATCTATTGT+TGG | + | chr3.2:89819093-89819112 | MS.gene42293:CDS | 45.0% |
| AAGCTGCAGCAGAAATGGGT+TGG | + | chr3.2:89818917-89818936 | MS.gene42293:CDS | 50.0% | |
| GCCATAGCAAGTACGGTAAC+AGG | - | chr3.2:89820560-89820579 | None:intergenic | 50.0% | |
| AGCGCAAGCTGCAGCAGAAA+TGG | + | chr3.2:89818912-89818931 | MS.gene42293:CDS | 55.0% | |
| GCGCAAGCTGCAGCAGAAAT+GGG | + | chr3.2:89818913-89818932 | MS.gene42293:CDS | 55.0% | |
| GTTCTTTGCAGCACCTGGTG+TGG | + | chr3.2:89819065-89819084 | MS.gene42293:CDS | 55.0% | |
| !! | TGGTGTGGCTAGTCTGGCTT+GGG | + | chr3.2:89819080-89819099 | MS.gene42293:CDS | 55.0% |
| ! | AGCACCTGGTGTGGCTAGTC+TGG | + | chr3.2:89819074-89819093 | MS.gene42293:CDS | 60.0% |
| ! | CAAGCCAGACTAGCCACACC+AGG | - | chr3.2:89819081-89819100 | None:intergenic | 60.0% |
| ! | GTGGGTTTTCACGGTTCCCG+TGG | + | chr3.2:89818777-89818796 | MS.gene42293:CDS | 60.0% |
| !! | CTGGTGTGGCTAGTCTGGCT+TGG | + | chr3.2:89819079-89819098 | MS.gene42293:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 89818649 | 89820748 | 89818649 | ID=MS.gene42293 |
| chr3.2 | mRNA | 89818649 | 89820748 | 89818649 | ID=MS.gene42293.t1;Parent=MS.gene42293 |
| chr3.2 | exon | 89818649 | 89819176 | 89818649 | ID=MS.gene42293.t1.exon1;Parent=MS.gene42293.t1 |
| chr3.2 | CDS | 89818649 | 89819176 | 89818649 | ID=cds.MS.gene42293.t1;Parent=MS.gene42293.t1 |
| chr3.2 | exon | 89820488 | 89820748 | 89820488 | ID=MS.gene42293.t1.exon2;Parent=MS.gene42293.t1 |
| chr3.2 | CDS | 89820488 | 89820748 | 89820488 | ID=cds.MS.gene42293.t1;Parent=MS.gene42293.t1 |
| Gene Sequence |
| Protein sequence |
