Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42331.t1 | XP_013462133.1 | 92.1 | 254 | 11 | 1 | 1 | 245 | 55 | 308 | 7.10E-129 | 469.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42331.t1 | Q9FUW6 | 73.2 | 254 | 59 | 1 | 1 | 245 | 55 | 308 | 6.1e-105 | 381.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42331.t1 | A0A072V477 | 92.1 | 254 | 11 | 1 | 1 | 245 | 55 | 308 | 5.1e-129 | 469.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049427 | MS.gene42331 | 0.823075 | 1.68E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene42331 | 0.807512 | 4.88E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene42331 | 0.815051 | 1.13E-51 | -1.69E-46 |
| MS.gene051858 | MS.gene42331 | 0.819183 | 1.33E-52 | -1.69E-46 |
| MS.gene052379 | MS.gene42331 | 0.824985 | 6.00E-54 | -1.69E-46 |
| MS.gene052615 | MS.gene42331 | 0.802072 | 6.67E-49 | -1.69E-46 |
| MS.gene052870 | MS.gene42331 | 0.803061 | 4.17E-49 | -1.69E-46 |
| MS.gene053103 | MS.gene42331 | 0.825068 | 5.73E-54 | -1.69E-46 |
| MS.gene053104 | MS.gene42331 | 0.82844 | 8.98E-55 | -1.69E-46 |
| MS.gene053213 | MS.gene42331 | 0.809204 | 2.12E-50 | -1.69E-46 |
| MS.gene053322 | MS.gene42331 | 0.830427 | 2.96E-55 | -1.69E-46 |
| MS.gene054642 | MS.gene42331 | 0.805883 | 1.08E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene42331 | 0.826139 | 3.20E-54 | -1.69E-46 |
| MS.gene055289 | MS.gene42331 | 0.808865 | 2.51E-50 | -1.69E-46 |
| MS.gene055499 | MS.gene42331 | 0.801803 | 7.58E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene42331 | 0.80274 | 4.86E-49 | -1.69E-46 |
| MS.gene056374 | MS.gene42331 | 0.811618 | 6.40E-51 | -1.69E-46 |
| MS.gene057011 | MS.gene42331 | 0.815599 | 8.51E-52 | -1.69E-46 |
| MS.gene057129 | MS.gene42331 | 0.808434 | 3.10E-50 | -1.69E-46 |
| MS.gene057416 | MS.gene42331 | 0.812627 | 3.86E-51 | -1.69E-46 |
| MS.gene058006 | MS.gene42331 | 0.805161 | 1.53E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene42331 | 0.807408 | 5.13E-50 | -1.69E-46 |
| MS.gene059029 | MS.gene42331 | 0.80487 | 1.76E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene42331 | 0.822837 | 1.91E-53 | -1.69E-46 |
| MS.gene059536 | MS.gene42331 | 0.834718 | 2.55E-56 | -1.69E-46 |
| MS.gene059902 | MS.gene42331 | 0.823659 | 1.23E-53 | -1.69E-46 |
| MS.gene059960 | MS.gene42331 | 0.82867 | 7.90E-55 | -1.69E-46 |
| MS.gene060804 | MS.gene42331 | 0.827159 | 1.82E-54 | -1.69E-46 |
| MS.gene061150 | MS.gene42331 | 0.806842 | 6.76E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene42331 | 0.809813 | 1.57E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42331.t1 | MTR_3g111990 | 92.126 | 254 | 11 | 1 | 1 | 245 | 55 | 308 | 3.17e-171 | 474 |
| MS.gene42331.t1 | MTR_3g111980 | 71.875 | 256 | 61 | 2 | 1 | 245 | 55 | 310 | 8.66e-130 | 369 |
| MS.gene42331.t1 | MTR_3g116840 | 66.142 | 254 | 77 | 1 | 1 | 245 | 59 | 312 | 1.21e-123 | 353 |
| MS.gene42331.t1 | MTR_5g020740 | 64.427 | 253 | 81 | 1 | 2 | 245 | 57 | 309 | 2.54e-115 | 332 |
| MS.gene42331.t1 | MTR_4g070370 | 57.874 | 254 | 98 | 1 | 1 | 245 | 58 | 311 | 5.33e-101 | 297 |
| MS.gene42331.t1 | MTR_4g070340 | 56.098 | 246 | 104 | 1 | 1 | 242 | 57 | 302 | 4.51e-98 | 289 |
| MS.gene42331.t1 | MTR_4g070340 | 54.980 | 251 | 104 | 1 | 1 | 242 | 57 | 307 | 3.90e-97 | 287 |
| MS.gene42331.t1 | MTR_4g070340 | 54.918 | 244 | 101 | 1 | 8 | 242 | 15 | 258 | 1.16e-94 | 279 |
| MS.gene42331.t1 | MTR_5g020800 | 54.724 | 254 | 105 | 2 | 1 | 245 | 66 | 318 | 1.24e-90 | 270 |
| MS.gene42331.t1 | MTR_5g020760 | 54.331 | 254 | 106 | 2 | 1 | 245 | 66 | 318 | 3.49e-90 | 269 |
| MS.gene42331.t1 | MTR_4g070360 | 48.235 | 255 | 121 | 2 | 2 | 245 | 55 | 309 | 6.09e-82 | 248 |
| MS.gene42331.t1 | MTR_5g020760 | 55.779 | 199 | 79 | 1 | 1 | 190 | 66 | 264 | 2.23e-71 | 219 |
| MS.gene42331.t1 | MTR_8g071130 | 45.560 | 259 | 125 | 4 | 2 | 245 | 55 | 312 | 1.02e-67 | 211 |
| MS.gene42331.t1 | MTR_5g027290 | 44.015 | 259 | 128 | 4 | 1 | 244 | 54 | 310 | 8.66e-66 | 206 |
| MS.gene42331.t1 | MTR_5g027240 | 44.141 | 256 | 126 | 4 | 1 | 241 | 54 | 307 | 2.11e-64 | 203 |
| MS.gene42331.t1 | MTR_3g008100 | 40.551 | 254 | 137 | 4 | 1 | 245 | 57 | 305 | 1.25e-62 | 199 |
| MS.gene42331.t1 | MTR_3g008140 | 41.339 | 254 | 134 | 5 | 1 | 245 | 57 | 304 | 3.76e-61 | 195 |
| MS.gene42331.t1 | MTR_3g008100 | 41.004 | 239 | 128 | 3 | 16 | 245 | 64 | 298 | 7.54e-60 | 191 |
| MS.gene42331.t1 | MTR_3g007970 | 40.157 | 254 | 138 | 4 | 1 | 245 | 57 | 305 | 9.75e-59 | 189 |
| MS.gene42331.t1 | MTR_1g093720 | 36.863 | 255 | 150 | 2 | 2 | 245 | 64 | 318 | 4.50e-53 | 175 |
| MS.gene42331.t1 | MTR_3g008100 | 34.459 | 148 | 83 | 4 | 1 | 139 | 57 | 199 | 1.04e-19 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42331.t1 | AT4G39230 | 66.535 | 254 | 76 | 1 | 1 | 245 | 55 | 308 | 4.28e-121 | 347 |
| MS.gene42331.t1 | AT1G75280 | 63.922 | 255 | 80 | 3 | 1 | 244 | 56 | 309 | 3.07e-112 | 325 |
| MS.gene42331.t1 | AT1G75290 | 62.598 | 254 | 84 | 2 | 2 | 244 | 57 | 310 | 1.56e-111 | 323 |
| MS.gene42331.t1 | AT1G75290 | 62.353 | 255 | 85 | 2 | 1 | 244 | 83 | 337 | 8.17e-111 | 322 |
| MS.gene42331.t1 | AT1G75300 | 56.134 | 269 | 90 | 4 | 1 | 244 | 56 | 321 | 1.15e-96 | 286 |
| MS.gene42331.t1 | AT1G19540 | 55.426 | 258 | 102 | 3 | 1 | 245 | 53 | 310 | 6.85e-90 | 268 |
| MS.gene42331.t1 | AT4G34540 | 47.826 | 253 | 123 | 1 | 2 | 245 | 54 | 306 | 1.07e-81 | 247 |
| MS.gene42331.t1 | AT1G19540 | 57.143 | 203 | 74 | 3 | 1 | 190 | 53 | 255 | 2.09e-68 | 211 |
| MS.gene42331.t1 | AT1G32100 | 40.769 | 260 | 137 | 4 | 1 | 245 | 60 | 317 | 8.05e-59 | 189 |
| MS.gene42331.t1 | AT4G13660 | 41.538 | 260 | 135 | 4 | 1 | 245 | 60 | 317 | 3.35e-58 | 187 |
| MS.gene42331.t1 | AT4G13660 | 41.538 | 260 | 135 | 4 | 1 | 245 | 60 | 317 | 3.35e-58 | 187 |
Find 56 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACGACTATGGGTGTTAATT+TGG | 0.229530 | 3.2:+89359320 | None:intergenic |
| AACATTACCAGTCTCTTTAA+TGG | 0.235620 | 3.2:-89359569 | None:intergenic |
| TTTGAGATTGAGCCTTCTTT+TGG | 0.245864 | 3.2:+89360601 | MS.gene42331:CDS |
| GTTGGTAGATACATAGGTAT+AGG | 0.311190 | 3.2:-89359927 | None:intergenic |
| ATTTGCAGCTGTCTTCAATA+AGG | 0.334657 | 3.2:+89360165 | MS.gene42331:intron |
| GTTGAATGAGTAAATGTTCT+TGG | 0.342329 | 3.2:-89360266 | None:intergenic |
| GTATCTACCAACTCCTTTGC+TGG | 0.357028 | 3.2:+89359938 | MS.gene42331:CDS |
| GCCTTGTGGGAGAAGAAGAT+TGG | 0.369735 | 3.2:+89360298 | MS.gene42331:CDS |
| TCACACACATGCTGCTGATC+AGG | 0.417659 | 3.2:+89359531 | MS.gene42331:CDS |
| ATTGCTAATCCTACATTGTC+TGG | 0.420981 | 3.2:-89360541 | None:intergenic |
| ATGTCGAATTTGTACTTTCA+CGG | 0.422437 | 3.2:-89359882 | None:intergenic |
| AAGAGACAAAGTCATTATCT+TGG | 0.430812 | 3.2:+89360006 | MS.gene42331:CDS |
| TTGAATGAGTAAATGTTCTT+GGG | 0.442585 | 3.2:-89360265 | None:intergenic |
| TAATAGAGGATAAACTTCTC+AGG | 0.447457 | 3.2:+89360344 | MS.gene42331:CDS |
| CTTGGTGGACCTGTAGCTCC+AGG | 0.463568 | 3.2:-89359986 | None:intergenic |
| AGAGTGGTGTAGTTGACATC+CGG | 0.463970 | 3.2:-89360646 | None:intergenic |
| AATCCTACATTGTCTGGAAA+AGG | 0.466589 | 3.2:-89360535 | None:intergenic |
| CAACGATGTTATCGCCTTGT+GGG | 0.467739 | 3.2:+89360285 | MS.gene42331:CDS |
| TTTGTCCAACCTGGAGCTAC+AGG | 0.481668 | 3.2:+89359977 | MS.gene42331:CDS |
| AGAAGGCTCAATCTCAAAGT+TGG | 0.492703 | 3.2:-89360596 | None:intergenic |
| ATCGCTGCCATTAAAGAGAC+TGG | 0.495657 | 3.2:+89359562 | MS.gene42331:CDS |
| AGAGACAAAGTCATTATCTT+GGG | 0.498507 | 3.2:+89360007 | MS.gene42331:CDS |
| ATAATGACTTTGTCTCTTGG+TGG | 0.505831 | 3.2:-89360001 | None:intergenic |
| TTGGTAGATACATAGGTATA+GGG | 0.507969 | 3.2:-89359926 | None:intergenic |
| AAGATAATGACTTTGTCTCT+TGG | 0.516542 | 3.2:-89360004 | None:intergenic |
| ATTCTCAAATGAAATGATCA+AGG | 0.517748 | 3.2:-89360678 | None:intergenic |
| CCTTGTGGGAGAAGAAGATT+GGG | 0.523799 | 3.2:+89360299 | MS.gene42331:CDS |
| AAACTTCTCAGGGATATTGA+AGG | 0.530402 | 3.2:+89360355 | MS.gene42331:CDS |
| GAAGCCTCAACCCCAAAAGA+AGG | 0.535959 | 3.2:-89360613 | None:intergenic |
| CCCAATCTTCTTCTCCCACA+AGG | 0.539941 | 3.2:-89360299 | None:intergenic |
| TCTCTACGATAATGAGAGCT+TGG | 0.541283 | 3.2:+89359465 | MS.gene42331:CDS |
| AAAGGAGTTGGTAGATACAT+AGG | 0.542824 | 3.2:-89359933 | None:intergenic |
| TTCAATAAGGAAGAAGACAT+TGG | 0.551282 | 3.2:+89360178 | MS.gene42331:CDS |
| TCAACGATGTTATCGCCTTG+TGG | 0.553409 | 3.2:+89360284 | MS.gene42331:CDS |
| GTACCAACATTTGTCCAACC+TGG | 0.556184 | 3.2:+89359968 | MS.gene42331:CDS |
| AAAATAACCAGCAAAGGAGT+TGG | 0.560210 | 3.2:-89359945 | None:intergenic |
| CGACATATGATTGAAGCTGA+AGG | 0.561768 | 3.2:+89359899 | MS.gene42331:CDS |
| TGAGGCTTCTGCTTTATACC+CGG | 0.563811 | 3.2:+89360627 | MS.gene42331:CDS |
| GAGTGGTGTAGTTGACATCC+GGG | 0.579953 | 3.2:-89360645 | None:intergenic |
| AAAGTCATTATCTTGGGTGA+TGG | 0.581506 | 3.2:+89360013 | MS.gene42331:CDS |
| GTGGACCTGTAGCTCCAGGT+TGG | 0.581878 | 3.2:-89359982 | None:intergenic |
| GCTCCAGGTTGGACAAATGT+TGG | 0.594940 | 3.2:-89359971 | None:intergenic |
| AATGAGTAAATGTTCTTGGG+AGG | 0.600435 | 3.2:-89360262 | None:intergenic |
| TTAAAGCTGTGGATGATCCA+AGG | 0.604389 | 3.2:+89360212 | MS.gene42331:CDS |
| TGGTACAAAATAACCAGCAA+AGG | 0.607224 | 3.2:-89359951 | None:intergenic |
| GGATGTCAACTACACCACTC+TGG | 0.615304 | 3.2:+89360648 | MS.gene42331:CDS |
| AATAGAGGATAAACTTCTCA+GGG | 0.615441 | 3.2:+89360345 | MS.gene42331:CDS |
| AACCTACACTATTAAAGCTG+TGG | 0.616425 | 3.2:+89360201 | MS.gene42331:CDS |
| GCTCAATCTCAAAGTTGGTG+TGG | 0.637181 | 3.2:-89360591 | None:intergenic |
| ATCCACAGCTTTAATAGTGT+AGG | 0.637952 | 3.2:-89360203 | None:intergenic |
| TTCAGAATTTGGGAACGACG+TGG | 0.641605 | 3.2:+89359820 | MS.gene42331:intron |
| AAATGTTCTTGGGAGGTCTG+AGG | 0.641726 | 3.2:-89360255 | None:intergenic |
| TGTCACTCAGTGTTTGTGAA+AGG | 0.666291 | 3.2:+89360565 | MS.gene42331:CDS |
| AGCAATGAAGCAAGTAGACG+TGG | 0.672283 | 3.2:+89359492 | MS.gene42331:CDS |
| TGTCAACTACACCACTCTGG+AGG | 0.681149 | 3.2:+89360651 | MS.gene42331:CDS |
| ATCAAGGCATTCCTCCAGAG+TGG | 0.685958 | 3.2:-89360662 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATGTTTATATTTAAATA+TGG | + | chr3.2:89360471-89360490 | MS.gene42331:intron | 10.0% |
| !!! | TATTACATAAAATTTTTCAA+GGG | - | chr3.2:89360329-89360348 | None:intergenic | 10.0% |
| !! | TGAAGAGAAATTTATAAAAA+GGG | + | chr3.2:89360425-89360444 | MS.gene42331:intron | 15.0% |
| !! | TTGAAGAGAAATTTATAAAA+AGG | + | chr3.2:89360424-89360443 | MS.gene42331:intron | 15.0% |
| !!! | CTATTACATAAAATTTTTCA+AGG | - | chr3.2:89360330-89360349 | None:intergenic | 15.0% |
| !!! | TGAAAAATTTTATGTAATAG+AGG | + | chr3.2:89360330-89360349 | MS.gene42331:CDS | 15.0% |
| !! | AACAATTTAAACAATGTCTT+TGG | - | chr3.2:89359750-89359769 | None:intergenic | 20.0% |
| !! | AATATAAGGTAAATTAAGAG+TGG | - | chr3.2:89359367-89359386 | None:intergenic | 20.0% |
| !! | ATATAAGGTAAATTAAGAGT+GGG | - | chr3.2:89359366-89359385 | None:intergenic | 20.0% |
| !! | GAGTATAAAATTTATGAAGA+GGG | + | chr3.2:89360447-89360466 | MS.gene42331:intron | 20.0% |
| !! | TAATATAGTAATAATATGCC+TGG | - | chr3.2:89359412-89359431 | None:intergenic | 20.0% |
| !! | TCGTGATATACTATAATATA+AGG | - | chr3.2:89359381-89359400 | None:intergenic | 20.0% |
| !!! | CTTTGAATATCTATCTATTT+TGG | + | chr3.2:89359703-89359722 | MS.gene42331:intron | 20.0% |
| ! | AAAATATGCAAAAGAAGAAG+AGG | - | chr3.2:89359609-89359628 | None:intergenic | 25.0% |
| ! | ATGCAAATTAAAATACAGTG+AGG | - | chr3.2:89360132-89360151 | None:intergenic | 25.0% |
| ! | GGAGTATAAAATTTATGAAG+AGG | + | chr3.2:89360446-89360465 | MS.gene42331:intron | 25.0% |
| ! | TTGAATGAGTAAATGTTCTT+GGG | - | chr3.2:89360268-89360287 | None:intergenic | 25.0% |
| !! | ATTAGAGTTTGAAATGAGAA+TGG | + | chr3.2:89359428-89359447 | MS.gene42331:intron | 25.0% |
| !!! | TTTTTGTTTTTGTTTGAGAG+AGG | - | chr3.2:89359681-89359700 | None:intergenic | 25.0% |
| AACATTACCAGTCTCTTTAA+TGG | - | chr3.2:89359572-89359591 | None:intergenic | 30.0% | |
| AAGAGACAAAGTCATTATCT+TGG | + | chr3.2:89360006-89360025 | MS.gene42331:CDS | 30.0% | |
| AAGATAATGACTTTGTCTCT+TGG | - | chr3.2:89360007-89360026 | None:intergenic | 30.0% | |
| AATAGAGGATAAACTTCTCA+GGG | + | chr3.2:89360345-89360364 | MS.gene42331:CDS | 30.0% | |
| AGAGACAAAGTCATTATCTT+GGG | + | chr3.2:89360007-89360026 | MS.gene42331:CDS | 30.0% | |
| ATGTCGAATTTGTACTTTCA+CGG | - | chr3.2:89359885-89359904 | None:intergenic | 30.0% | |
| GTTGAATGAGTAAATGTTCT+TGG | - | chr3.2:89360269-89360288 | None:intergenic | 30.0% | |
| TAATAGAGGATAAACTTCTC+AGG | + | chr3.2:89360344-89360363 | MS.gene42331:CDS | 30.0% | |
| TTCAATAAGGAAGAAGACAT+TGG | + | chr3.2:89360178-89360197 | MS.gene42331:CDS | 30.0% | |
| TTGGTAGATACATAGGTATA+GGG | - | chr3.2:89359929-89359948 | None:intergenic | 30.0% | |
| ! | AGAATTTTGTTCAATGTCCT+TGG | - | chr3.2:89360232-89360251 | None:intergenic | 30.0% |
| ! | AGATTTTTCCCTTCAGAATT+TGG | + | chr3.2:89359809-89359828 | MS.gene42331:intron | 30.0% |
| ! | GATTTTTCCCTTCAGAATTT+GGG | + | chr3.2:89359810-89359829 | MS.gene42331:intron | 30.0% |
| ! | TAAAGAGACTGGTAATGTTA+AGG | + | chr3.2:89359573-89359592 | MS.gene42331:intron | 30.0% |
| !!! | ATCTATTTTGGCTTGTTCTA+GGG | + | chr3.2:89359715-89359734 | MS.gene42331:intron | 30.0% |
| !!! | TATCTATTTTGGCTTGTTCT+AGG | + | chr3.2:89359714-89359733 | MS.gene42331:intron | 30.0% |
| AAAATAACCAGCAAAGGAGT+TGG | - | chr3.2:89359948-89359967 | None:intergenic | 35.0% | |
| AAACTTCTCAGGGATATTGA+AGG | + | chr3.2:89360355-89360374 | MS.gene42331:CDS | 35.0% | |
| AAAGTCATTATCTTGGGTGA+TGG | + | chr3.2:89360013-89360032 | MS.gene42331:CDS | 35.0% | |
| AACCTACACTATTAAAGCTG+TGG | + | chr3.2:89360201-89360220 | MS.gene42331:CDS | 35.0% | |
| AATCCTACATTGTCTGGAAA+AGG | - | chr3.2:89360538-89360557 | None:intergenic | 35.0% | |
| AATGAGTAAATGTTCTTGGG+AGG | - | chr3.2:89360265-89360284 | None:intergenic | 35.0% | |
| ACAGTGAGGTATGCAAATAT+TGG | - | chr3.2:89360118-89360137 | None:intergenic | 35.0% | |
| ATAATGACTTTGTCTCTTGG+TGG | - | chr3.2:89360004-89360023 | None:intergenic | 35.0% | |
| ATTGCTAATCCTACATTGTC+TGG | - | chr3.2:89360544-89360563 | None:intergenic | 35.0% | |
| ATTTGCAGCTGTCTTCAATA+AGG | + | chr3.2:89360165-89360184 | MS.gene42331:intron | 35.0% | |
| TATATCACGAATGAACATCC+AGG | + | chr3.2:89359391-89359410 | MS.gene42331:intron | 35.0% | |
| TGCAAAAGAAGAAGAGGATA+AGG | - | chr3.2:89359603-89359622 | None:intergenic | 35.0% | |
| TGGTACAAAATAACCAGCAA+AGG | - | chr3.2:89359954-89359973 | None:intergenic | 35.0% | |
| ! | ATCCACAGCTTTAATAGTGT+AGG | - | chr3.2:89360206-89360225 | None:intergenic | 35.0% |
| ! | GTTGGTAGATACATAGGTAT+AGG | - | chr3.2:89359930-89359949 | None:intergenic | 35.0% |
| ! | GTTTGAAATGAGAATGGCAT+TGG | + | chr3.2:89359434-89359453 | MS.gene42331:intron | 35.0% |
| ! | TGGGTGTTTGAAATCTTACA+TGG | - | chr3.2:89359347-89359366 | None:intergenic | 35.0% |
| ! | TTGAGATTGAGCCTTCTTTT+GGG | + | chr3.2:89360602-89360621 | MS.gene42331:CDS | 35.0% |
| ! | TTGGGTGATGGCAATAAAAA+AGG | + | chr3.2:89360025-89360044 | MS.gene42331:CDS | 35.0% |
| !! | AAAGGAGTTGGTAGATACAT+AGG | - | chr3.2:89359936-89359955 | None:intergenic | 35.0% |
| !! | GTGGTTTAGTTCATGCATTT+TGG | + | chr3.2:89360075-89360094 | MS.gene42331:intron | 35.0% |
| !! | TTTGAGATTGAGCCTTCTTT+TGG | + | chr3.2:89360601-89360620 | MS.gene42331:CDS | 35.0% |
| AGAAGGCTCAATCTCAAAGT+TGG | - | chr3.2:89360599-89360618 | None:intergenic | 40.0% | |
| CGACATATGATTGAAGCTGA+AGG | + | chr3.2:89359899-89359918 | MS.gene42331:CDS | 40.0% | |
| TCTCTACGATAATGAGAGCT+TGG | + | chr3.2:89359465-89359484 | MS.gene42331:CDS | 40.0% | |
| TGTCACTCAGTGTTTGTGAA+AGG | + | chr3.2:89360565-89360584 | MS.gene42331:CDS | 40.0% | |
| TTAAAGCTGTGGATGATCCA+AGG | + | chr3.2:89360212-89360231 | MS.gene42331:CDS | 40.0% | |
| TTAACCACTACTTCTACGCT+TGG | + | chr3.2:89360053-89360072 | MS.gene42331:intron | 40.0% | |
| TTCTCAGGGATATTGAAGGT+TGG | + | chr3.2:89360359-89360378 | MS.gene42331:intron | 40.0% | |
| ! | ACACCTTTTCCAGACAATGT+AGG | + | chr3.2:89360532-89360551 | MS.gene42331:CDS | 40.0% |
| ! | TGAGATTGAGCCTTCTTTTG+GGG | + | chr3.2:89360603-89360622 | MS.gene42331:CDS | 40.0% |
| !! | AAATGAGAATGGCATTGGCA+GGG | + | chr3.2:89359439-89359458 | MS.gene42331:intron | 40.0% |
| !!! | TACAGATTTTGCTGGCTCAA+CGG | - | chr3.2:89359858-89359877 | None:intergenic | 40.0% |
| AAATGTTCTTGGGAGGTCTG+AGG | - | chr3.2:89360258-89360277 | None:intergenic | 45.0% | |
| ACGTCGTTCCCAAATTCTGA+AGG | - | chr3.2:89359821-89359840 | None:intergenic | 45.0% | |
| AGAGTGGTGTAGTTGACATC+CGG | - | chr3.2:89360649-89360668 | None:intergenic | 45.0% | |
| AGCAATGAAGCAAGTAGACG+TGG | + | chr3.2:89359492-89359511 | MS.gene42331:CDS | 45.0% | |
| ATCGCTGCCATTAAAGAGAC+TGG | + | chr3.2:89359562-89359581 | MS.gene42331:CDS | 45.0% | |
| CAACGATGTTATCGCCTTGT+GGG | + | chr3.2:89360285-89360304 | MS.gene42331:CDS | 45.0% | |
| CCTTGTGGGAGAAGAAGATT+GGG | + | chr3.2:89360299-89360318 | MS.gene42331:CDS | 45.0% | |
| CGTCGTTCCCAAATTCTGAA+GGG | - | chr3.2:89359820-89359839 | None:intergenic | 45.0% | |
| GTACCAACATTTGTCCAACC+TGG | + | chr3.2:89359968-89359987 | MS.gene42331:CDS | 45.0% | |
| GTATCTACCAACTCCTTTGC+TGG | + | chr3.2:89359938-89359957 | MS.gene42331:CDS | 45.0% | |
| TCAACGATGTTATCGCCTTG+TGG | + | chr3.2:89360284-89360303 | MS.gene42331:CDS | 45.0% | |
| TGAGGCTTCTGCTTTATACC+CGG | + | chr3.2:89360627-89360646 | MS.gene42331:CDS | 45.0% | |
| TTCAGAATTTGGGAACGACG+TGG | + | chr3.2:89359820-89359839 | MS.gene42331:intron | 45.0% | |
| ! | ACGGCGAATACAGATTTTGC+TGG | - | chr3.2:89359866-89359885 | None:intergenic | 45.0% |
| !! | AATGAGAATGGCATTGGCAG+GGG | + | chr3.2:89359440-89359459 | MS.gene42331:intron | 45.0% |
| !! | GAAATGAGAATGGCATTGGC+AGG | + | chr3.2:89359438-89359457 | MS.gene42331:intron | 45.0% |
| !! | GCTCAATCTCAAAGTTGGTG+TGG | - | chr3.2:89360594-89360613 | None:intergenic | 45.0% |
| ACCACCAAGCGTAGAAGTAG+TGG | - | chr3.2:89360060-89360079 | None:intergenic | 50.0% | |
| ACCACTACTTCTACGCTTGG+TGG | + | chr3.2:89360056-89360075 | MS.gene42331:intron | 50.0% | |
| CCCAATCTTCTTCTCCCACA+AGG | - | chr3.2:89360302-89360321 | None:intergenic | 50.0% | |
| GAAGCCTCAACCCCAAAAGA+AGG | - | chr3.2:89360616-89360635 | None:intergenic | 50.0% | |
| GAGTGGTGTAGTTGACATCC+GGG | - | chr3.2:89360648-89360667 | None:intergenic | 50.0% | |
| GCCTTGTGGGAGAAGAAGAT+TGG | + | chr3.2:89360298-89360317 | MS.gene42331:CDS | 50.0% | |
| GGATGTCAACTACACCACTC+TGG | + | chr3.2:89360648-89360667 | MS.gene42331:CDS | 50.0% | |
| TCACACACATGCTGCTGATC+AGG | + | chr3.2:89359531-89359550 | MS.gene42331:CDS | 50.0% | |
| TGTCAACTACACCACTCTGG+AGG | + | chr3.2:89360651-89360670 | MS.gene42331:CDS | 50.0% | |
| TTTGTCCAACCTGGAGCTAC+AGG | + | chr3.2:89359977-89359996 | MS.gene42331:CDS | 50.0% | |
| ! | ATCAAGGCATTCCTCCAGAG+TGG | - | chr3.2:89360665-89360684 | None:intergenic | 50.0% |
| ! | GCTCCAGGTTGGACAAATGT+TGG | - | chr3.2:89359974-89359993 | None:intergenic | 50.0% |
| !! | ATGAGAATGGCATTGGCAGG+GGG | + | chr3.2:89359441-89359460 | MS.gene42331:intron | 50.0% |
| !!! | ATTTTGCTGGCTCAACGGCA+TGG | - | chr3.2:89359853-89359872 | None:intergenic | 50.0% |
| !!! | TGAGCCTTCTTTTGGGGTTG+AGG | + | chr3.2:89360609-89360628 | MS.gene42331:CDS | 50.0% |
| GTGGACCTGTAGCTCCAGGT+TGG | - | chr3.2:89359985-89360004 | None:intergenic | 60.0% | |
| ! | CTTGGTGGACCTGTAGCTCC+AGG | - | chr3.2:89359989-89360008 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 89359327 | 89360696 | 89359327 | ID=MS.gene42331 |
| chr3.2 | mRNA | 89359327 | 89360696 | 89359327 | ID=MS.gene42331.t1;Parent=MS.gene42331 |
| chr3.2 | exon | 89359327 | 89359347 | 89359327 | ID=MS.gene42331.t1.exon1;Parent=MS.gene42331.t1 |
| chr3.2 | CDS | 89359327 | 89359347 | 89359327 | ID=cds.MS.gene42331.t1;Parent=MS.gene42331.t1 |
| chr3.2 | exon | 89359460 | 89359583 | 89359460 | ID=MS.gene42331.t1.exon2;Parent=MS.gene42331.t1 |
| chr3.2 | CDS | 89359460 | 89359583 | 89359460 | ID=cds.MS.gene42331.t1;Parent=MS.gene42331.t1 |
| chr3.2 | exon | 89359825 | 89360046 | 89359825 | ID=MS.gene42331.t1.exon3;Parent=MS.gene42331.t1 |
| chr3.2 | CDS | 89359825 | 89360046 | 89359825 | ID=cds.MS.gene42331.t1;Parent=MS.gene42331.t1 |
| chr3.2 | exon | 89360173 | 89360376 | 89360173 | ID=MS.gene42331.t1.exon4;Parent=MS.gene42331.t1 |
| chr3.2 | CDS | 89360173 | 89360376 | 89360173 | ID=cds.MS.gene42331.t1;Parent=MS.gene42331.t1 |
| chr3.2 | exon | 89360530 | 89360696 | 89360530 | ID=MS.gene42331.t1.exon5;Parent=MS.gene42331.t1 |
| chr3.2 | CDS | 89360530 | 89360696 | 89360530 | ID=cds.MS.gene42331.t1;Parent=MS.gene42331.t1 |
| Gene Sequence |
| Protein sequence |
