Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42530.t1 | XP_004509467.1 | 81.3 | 1236 | 223 | 1 | 1 | 1228 | 1 | 1236 | 0.00E+00 | 1437.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42530.t1 | Q9FJL0 | 67.2 | 1220 | 397 | 1 | 8 | 1227 | 23 | 1239 | 0.0e+00 | 1109.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42530.t1 | A0A1S2YT40 | 81.3 | 1236 | 223 | 1 | 1 | 1228 | 1 | 1236 | 0.0e+00 | 1437.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene043593 | MS.gene42530 | PPI |
| MS.gene064353 | MS.gene42530 | PPI |
| MS.gene45748 | MS.gene42530 | PPI |
| MS.gene42530 | MS.gene056169 | PPI |
| MS.gene035825 | MS.gene42530 | PPI |
| MS.gene42530 | MS.gene034360 | PPI |
| MS.gene073698 | MS.gene42530 | PPI |
| MS.gene73093 | MS.gene42530 | PPI |
| MS.gene035826 | MS.gene42530 | PPI |
| MS.gene064351 | MS.gene42530 | PPI |
| MS.gene035828 | MS.gene42530 | PPI |
| MS.gene42530 | MS.gene61618 | PPI |
| MS.gene070800 | MS.gene42530 | PPI |
| MS.gene99872 | MS.gene42530 | PPI |
| MS.gene043643 | MS.gene42530 | PPI |
| MS.gene040722 | MS.gene42530 | PPI |
| MS.gene016667 | MS.gene42530 | PPI |
| MS.gene35713 | MS.gene42530 | PPI |
| MS.gene84088 | MS.gene42530 | PPI |
| MS.gene059302 | MS.gene42530 | PPI |
| MS.gene043595 | MS.gene42530 | PPI |
| MS.gene66615 | MS.gene42530 | PPI |
| MS.gene043645 | MS.gene42530 | PPI |
| MS.gene061303 | MS.gene42530 | PPI |
| MS.gene95250 | MS.gene42530 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42530.t1 | MTR_8g072890 | 89.457 | 1233 | 125 | 1 | 1 | 1228 | 1 | 1233 | 0.0 | 2225 |
| MS.gene42530.t1 | MTR_7g091430 | 84.925 | 869 | 100 | 6 | 370 | 1228 | 4 | 851 | 0.0 | 1390 |
| MS.gene42530.t1 | MTR_7g091420 | 91.206 | 398 | 29 | 1 | 1 | 392 | 1 | 398 | 0.0 | 729 |
| MS.gene42530.t1 | MTR_1g051825 | 23.806 | 1298 | 763 | 48 | 9 | 1204 | 1 | 1174 | 9.71e-44 | 174 |
| MS.gene42530.t1 | MTR_1g051825 | 23.703 | 1291 | 773 | 46 | 9 | 1204 | 25 | 1198 | 1.18e-43 | 174 |
| MS.gene42530.t1 | MTR_8g037325 | 24.050 | 1289 | 748 | 49 | 9 | 1201 | 1 | 1154 | 3.62e-43 | 172 |
| MS.gene42530.t1 | MTR_0003s0460 | 27.089 | 347 | 192 | 9 | 11 | 353 | 6 | 295 | 8.01e-22 | 103 |
| MS.gene42530.t1 | MTR_1g069910 | 34.161 | 161 | 91 | 3 | 11 | 168 | 10 | 158 | 2.00e-21 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42530.t1 | AT5G48600 | 72.808 | 1232 | 329 | 1 | 2 | 1227 | 11 | 1242 | 0.0 | 1786 |
| MS.gene42530.t1 | AT5G48600 | 72.727 | 1232 | 327 | 2 | 2 | 1227 | 11 | 1239 | 0.0 | 1781 |
| MS.gene42530.t1 | AT3G54670 | 24.354 | 1355 | 744 | 49 | 4 | 1221 | 5 | 1215 | 1.78e-72 | 265 |
| MS.gene42530.t1 | AT3G47460 | 23.870 | 1261 | 782 | 46 | 9 | 1201 | 1 | 1151 | 1.06e-41 | 167 |
| MS.gene42530.t1 | AT5G62410 | 23.571 | 1277 | 769 | 47 | 9 | 1201 | 1 | 1154 | 4.47e-41 | 165 |
| MS.gene42530.t1 | AT3G47460 | 23.668 | 1276 | 769 | 49 | 9 | 1201 | 1 | 1154 | 5.29e-40 | 162 |
| MS.gene42530.t1 | AT2G27170 | 25.877 | 228 | 153 | 5 | 9 | 235 | 1 | 213 | 1.60e-13 | 76.3 |
| MS.gene42530.t1 | AT2G27170 | 25.877 | 228 | 153 | 5 | 9 | 235 | 1 | 213 | 1.60e-13 | 76.3 |
| MS.gene42530.t1 | AT2G27170 | 25.877 | 228 | 153 | 5 | 9 | 235 | 1 | 213 | 2.02e-13 | 75.9 |
| MS.gene42530.t1 | AT2G27170 | 42.308 | 78 | 43 | 1 | 1130 | 1205 | 1099 | 1176 | 2.06e-13 | 75.9 |
| MS.gene42530.t1 | AT2G27170 | 25.877 | 228 | 153 | 5 | 9 | 235 | 1 | 213 | 2.02e-13 | 75.9 |
| MS.gene42530.t1 | AT2G27170 | 42.308 | 78 | 43 | 1 | 1130 | 1205 | 1099 | 1176 | 2.06e-13 | 75.9 |
Find 218 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAACTTGTTTACTTTCT+TGG | 0.119655 | 7.1:+16096119 | None:intergenic |
| TCATGAGGTCCTTGAGATTT+TGG | 0.144036 | 7.1:+16097737 | None:intergenic |
| TGCCATATCATTAAAGTTAA+AGG | 0.163850 | 7.1:-16087606 | MS.gene42530:CDS |
| GATGCTATGTTGTTTGTATT+TGG | 0.179705 | 7.1:-16099093 | MS.gene42530:CDS |
| TGAAGGCTTTCTAGAATATT+TGG | 0.204321 | 7.1:-16097714 | MS.gene42530:CDS |
| CGGCGAGTTGTTACTCTTGA+TGG | 0.207554 | 7.1:-16089557 | MS.gene42530:CDS |
| TTTCAGATTGGATGAGTTTA+TGG | 0.215840 | 7.1:-16087639 | MS.gene42530:intron |
| AAGAGTTATCTCTCTTAAAA+TGG | 0.222577 | 7.1:-16096362 | MS.gene42530:CDS |
| TTCCTTTAACTTTAATGATA+TGG | 0.226102 | 7.1:+16087604 | None:intergenic |
| TTCTACCAATCACCACAATT+TGG | 0.265956 | 7.1:-16098940 | MS.gene42530:CDS |
| ACTCGAGCTTGTGGATTCTT+TGG | 0.273460 | 7.1:-16086593 | MS.gene42530:CDS |
| TCTGAAATTGAATCAAGATT+TGG | 0.296028 | 7.1:+16087930 | None:intergenic |
| GAACCTTTACTAAATCAAAA+AGG | 0.309554 | 7.1:+16089965 | None:intergenic |
| ATACAAAGAATTGGAAATAA+AGG | 0.310278 | 7.1:-16088221 | MS.gene42530:CDS |
| ACCTTTCTCTTTCAATTTCT+CGG | 0.312548 | 7.1:+16097913 | None:intergenic |
| TCACAGCATCCATCATTCTT+TGG | 0.315411 | 7.1:+16089375 | None:intergenic |
| TGCTGCTTGTGACCTGAAAA+AGG | 0.320460 | 7.1:-16088000 | MS.gene42530:CDS |
| GAGGAGAAGGAAAAGTTAAA+TGG | 0.321712 | 7.1:-16088587 | MS.gene42530:CDS |
| TGTTGCTACTTTCATGATAT+TGG | 0.323749 | 7.1:-16092636 | MS.gene42530:intron |
| GTGTTGACCTTGACAATAAT+AGG | 0.324515 | 7.1:-16097892 | MS.gene42530:CDS |
| GCAATATCAACAGCATGTTC+TGG | 0.331761 | 7.1:-16092734 | MS.gene42530:CDS |
| TTTCTAATTGAGAGAAGATC+TGG | 0.339272 | 7.1:-16096537 | MS.gene42530:CDS |
| GGGATATTATCCTCGAGTTT+TGG | 0.345073 | 7.1:+16095663 | None:intergenic |
| CATCTTGTTCAAGAGCAATT+CGG | 0.348705 | 7.1:+16093843 | None:intergenic |
| ATGCTATGTTGTTTGTATTT+GGG | 0.349242 | 7.1:-16099092 | MS.gene42530:CDS |
| TAATAGGTTTCTGATCCTTC+AGG | 0.349569 | 7.1:-16097876 | MS.gene42530:intron |
| AAATAAGCATTACCTCCTTC+TGG | 0.349782 | 7.1:+16089294 | None:intergenic |
| TGAGCTTGTTAAATTTCGTT+TGG | 0.352641 | 7.1:-16094307 | MS.gene42530:CDS |
| AAGGAACAATATGTTTGAAT+TGG | 0.368153 | 7.1:-16085994 | MS.gene42530:CDS |
| GAAGAAAGCATACAAAGAAT+TGG | 0.372232 | 7.1:-16088230 | MS.gene42530:CDS |
| TACAAAGAATTGGAAATAAA+GGG | 0.375070 | 7.1:-16088220 | MS.gene42530:CDS |
| GTTATCAATGTAATACTTAG+AGG | 0.377098 | 7.1:+16097961 | None:intergenic |
| ACAAATTGGATGCAGAATTC+AGG | 0.381557 | 7.1:-16088078 | MS.gene42530:intron |
| GGATGAAATTGACGCCGCTC+TGG | 0.383477 | 7.1:-16086291 | MS.gene42530:CDS |
| TCGTTTGGAGCTTGAACCTT+GGG | 0.390145 | 7.1:-16094292 | MS.gene42530:CDS |
| CAGAATTCAGGTAGATTTAG+TGG | 0.390540 | 7.1:-16088066 | MS.gene42530:CDS |
| TTTAGATTCAGAGAAGAGTC+AGG | 0.392067 | 7.1:-16093789 | MS.gene42530:CDS |
| AAGAACTTAATGCAGTTACT+TGG | 0.394222 | 7.1:-16087788 | MS.gene42530:CDS |
| AAATCTATCAAGCACTCTTC+TGG | 0.396797 | 7.1:+16085892 | None:intergenic |
| ATGTATCCCTTCTATTTGTC+CGG | 0.400283 | 7.1:+16093730 | None:intergenic |
| AAGGAAACCGGACAAATAGA+AGG | 0.407101 | 7.1:-16093737 | MS.gene42530:CDS |
| ATTTGGGAAGAGAGCGAAAC+AGG | 0.413124 | 7.1:-16099076 | MS.gene42530:intron |
| ATTACTCTTTCCACTTCCAT+TGG | 0.417625 | 7.1:+16099122 | None:intergenic |
| TGTGCCCATCTTCCCACCCT+TGG | 0.420675 | 7.1:+16089487 | None:intergenic |
| CAAACACCGGGATGTCTTAG+AGG | 0.421679 | 7.1:-16088412 | MS.gene42530:CDS |
| TTACTCTTTCCACTTCCATT+GGG | 0.422733 | 7.1:+16099123 | None:intergenic |
| CAATATCAACAGCATGTTCT+GGG | 0.423763 | 7.1:-16092733 | MS.gene42530:CDS |
| AATATTTGGAAGATATTGTT+GGG | 0.426789 | 7.1:-16097700 | MS.gene42530:CDS |
| GCTGGAAGATAAAGTGGAAA+AGG | 0.429570 | 7.1:-16095818 | MS.gene42530:intron |
| GTGCCCATCTTCCCACCCTT+GGG | 0.430109 | 7.1:+16089488 | None:intergenic |
| GTGGATTTGATGCAACTTCA+AGG | 0.430163 | 7.1:+16089151 | None:intergenic |
| ACGCGTTGGCCCCTTTCATA+AGG | 0.431356 | 7.1:-16099243 | MS.gene42530:intron |
| ATCTTGTTCAAGAGCAATTC+GGG | 0.431998 | 7.1:+16093844 | None:intergenic |
| GATGCGATTGAACAAAGTTT+CGG | 0.440406 | 7.1:-16098976 | MS.gene42530:CDS |
| CACAGTTGTTGCTAAGGATC+TGG | 0.441625 | 7.1:-16089899 | MS.gene42530:CDS |
| TAATCCCAAGGGTGGGAAGA+TGG | 0.442250 | 7.1:-16089492 | MS.gene42530:CDS |
| CTTCTGGCAAACGACAAAAC+TGG | 0.442633 | 7.1:+16085908 | None:intergenic |
| TTCGTTTGGAGCTTGAACCT+TGG | 0.449280 | 7.1:-16094293 | MS.gene42530:CDS |
| GACATACTGCTCAAGATGCT+TGG | 0.449959 | 7.1:+16088153 | None:intergenic |
| GAAGTTGACTAAAGGAATAG+AGG | 0.451975 | 7.1:-16088639 | MS.gene42530:CDS |
| ATTCGAAGAAGGAGAAAGAA+AGG | 0.452096 | 7.1:-16088616 | MS.gene42530:CDS |
| CGATCGACCTCGTTCTCTTG+TGG | 0.453388 | 7.1:+16089132 | None:intergenic |
| TTCCCAGACTCTTAGCTCAC+TGG | 0.454673 | 7.1:-16086363 | MS.gene42530:intron |
| CAATAAATAACCTTATGAAA+GGG | 0.455092 | 7.1:+16099233 | None:intergenic |
| GAATATTTGGAAGATATTGT+TGG | 0.456488 | 7.1:-16097701 | MS.gene42530:CDS |
| TAGGCAACACGCATAGCATA+TGG | 0.457628 | 7.1:-16089596 | MS.gene42530:CDS |
| GAATTGGCTGATCGACTTGT+TGG | 0.461151 | 7.1:-16085978 | MS.gene42530:CDS |
| AGAGTAATATAGAAAAGAAC+AGG | 0.464491 | 7.1:-16094000 | MS.gene42530:CDS |
| TCTTTGATGAAAAGCCTAGA+TGG | 0.465321 | 7.1:+16099305 | None:intergenic |
| AAAGAACAGGCGTGAAGCAT+TGG | 0.465687 | 7.1:-16093987 | MS.gene42530:CDS |
| TTCAAGAATGTGTCTATCGT+TGG | 0.466741 | 7.1:-16086172 | MS.gene42530:CDS |
| AGAAAGGTTAACTGAGGAGA+AGG | 0.466952 | 7.1:-16088600 | MS.gene42530:CDS |
| TTCCTTCGCAGAGCGAATCT+TGG | 0.469309 | 7.1:-16092659 | MS.gene42530:CDS |
| ATCATGAAAGCTAAGGAAAC+CGG | 0.470310 | 7.1:-16093749 | MS.gene42530:CDS |
| ATTCGAGCTACAAATGTGTC+TGG | 0.474855 | 7.1:-16089461 | MS.gene42530:CDS |
| AAGCTAGCTGTTGATGATAC+AGG | 0.476092 | 7.1:-16096324 | MS.gene42530:CDS |
| TGGAATCACAACCACCATCT+AGG | 0.476334 | 7.1:-16099319 | MS.gene42530:CDS |
| ACTATCCAAATTGTGGTGAT+TGG | 0.479332 | 7.1:+16098935 | None:intergenic |
| TCAAGAATGTGTCTATCGTT+GGG | 0.481084 | 7.1:-16086171 | MS.gene42530:CDS |
| GACTGATGAGGAGAGGGTCT+TGG | 0.481328 | 7.1:-16095622 | MS.gene42530:CDS |
| AATACAACGCCTTCGGAGAA+AGG | 0.481974 | 7.1:+16086568 | None:intergenic |
| TAATGATACGAGGAAGTGTA+AGG | 0.483258 | 7.1:-16095917 | MS.gene42530:CDS |
| TTGCCTAGAAGAAAATCTTA+AGG | 0.484912 | 7.1:-16096268 | MS.gene42530:CDS |
| TGAGAAAGAAAGAGACAGCT+TGG | 0.485868 | 7.1:-16096490 | MS.gene42530:CDS |
| TAACTTATCCGGTGGTGAAA+AGG | 0.487138 | 7.1:-16086506 | MS.gene42530:intron |
| CACAAGGTTCAAATAGAGAC+AGG | 0.488374 | 7.1:-16088677 | MS.gene42530:CDS |
| AATCCCAAGGGTGGGAAGAT+GGG | 0.490686 | 7.1:-16089491 | MS.gene42530:CDS |
| AAGCAATGCAACTGTTTCAC+AGG | 0.492234 | 7.1:+16087977 | None:intergenic |
| GCCCACGCCGCTTTATGTAA+TGG | 0.498316 | 7.1:-16086312 | MS.gene42530:CDS |
| ATGCTCAGTTCATTATCATA+AGG | 0.502590 | 7.1:-16086123 | MS.gene42530:intron |
| CCAATAAATAACCTTATGAA+AGG | 0.502639 | 7.1:+16099232 | None:intergenic |
| CACAAGAGAACGAGGTCGAT+CGG | 0.503591 | 7.1:-16089131 | MS.gene42530:CDS |
| GAGATCACAGAGAGTTCTAA+AGG | 0.503787 | 7.1:-16095597 | MS.gene42530:intron |
| GAAGTGTAAGGAAGAAATCA+AGG | 0.507289 | 7.1:-16095905 | MS.gene42530:CDS |
| CAAGAAGCTGGAAGATAAAG+TGG | 0.507740 | 7.1:-16095824 | MS.gene42530:CDS |
| TCTCAAGGACCTCATGATGA+AGG | 0.509105 | 7.1:-16097731 | MS.gene42530:CDS |
| GCGAATTTCATTCAATTCAA+CGG | 0.509182 | 7.1:+16089397 | None:intergenic |
| AAGATCTGGGGTGGTGCAGA+TGG | 0.510779 | 7.1:-16096523 | MS.gene42530:CDS |
| AACACTGAATACAACGCCTT+CGG | 0.511314 | 7.1:+16086561 | None:intergenic |
| TCTTTGGATCCTTTCTCCGA+AGG | 0.513068 | 7.1:-16086577 | MS.gene42530:CDS |
| ACCGAGAAATTGAAAGAGAA+AGG | 0.514385 | 7.1:-16097914 | MS.gene42530:CDS |
| ATTAAAATCTCAGAAGTTGA+AGG | 0.514578 | 7.1:-16088827 | MS.gene42530:CDS |
| TGCAGATTTCGAAATGGAGC+TGG | 0.520622 | 7.1:-16089324 | MS.gene42530:CDS |
| TTAGACCACCAAAGAAAAGC+TGG | 0.523255 | 7.1:-16086540 | MS.gene42530:CDS |
| TGAAATTCGCCAAAGAATGA+TGG | 0.523558 | 7.1:-16089384 | MS.gene42530:CDS |
| AATTGAAGCTCTTATGAAAG+AGG | 0.524750 | 7.1:-16095709 | MS.gene42530:CDS |
| GAATCGGAAGATCAAGAAGC+TGG | 0.526131 | 7.1:-16095836 | MS.gene42530:CDS |
| AATCTGGAACAATGAGTGGC+GGG | 0.528550 | 7.1:-16089520 | MS.gene42530:CDS |
| TTGGGAATTATGTGAAAGAC+AGG | 0.529899 | 7.1:-16086153 | MS.gene42530:CDS |
| GGTGACCTAGGTGCCATTGA+TGG | 0.530320 | 7.1:-16093698 | MS.gene42530:intron |
| ATGATGAAGAAGTTGACTAA+AGG | 0.531726 | 7.1:-16088647 | MS.gene42530:CDS |
| CAAAGGAAAATAGAGAATGC+TGG | 0.531728 | 7.1:-16088859 | MS.gene42530:CDS |
| AGAACTTAATGCAGTTACTT+GGG | 0.533365 | 7.1:-16087787 | MS.gene42530:CDS |
| TTTAGGTTTCAGAGCTTCAA+AGG | 0.534205 | 7.1:-16088876 | MS.gene42530:intron |
| GTGGTTGGACCCAATGGAAG+TGG | 0.534488 | 7.1:-16099132 | MS.gene42530:CDS |
| ATTTCATCCATTACATAAAG+CGG | 0.535065 | 7.1:+16086305 | None:intergenic |
| AGGAATAGAGGATTCGAAGA+AGG | 0.535754 | 7.1:-16088627 | MS.gene42530:CDS |
| AGAGAACGAGGTCGATCGGT+TGG | 0.536633 | 7.1:-16089127 | MS.gene42530:CDS |
| TGGATTTGATGCAACTTCAA+GGG | 0.536894 | 7.1:+16089152 | None:intergenic |
| ATGGTGGAAACAATGAGTTT+CGG | 0.537319 | 7.1:-16089577 | MS.gene42530:CDS |
| GATGAAATTGACGCCGCTCT+GGG | 0.538279 | 7.1:-16086290 | MS.gene42530:intron |
| AAAAGCAATCATGAAAGCTA+AGG | 0.540084 | 7.1:-16093756 | MS.gene42530:CDS |
| TCGGCTGTGGTTGGACCCAA+TGG | 0.541762 | 7.1:-16099138 | MS.gene42530:CDS |
| TCCATTACATAAAGCGGCGT+GGG | 0.542434 | 7.1:+16086311 | None:intergenic |
| AGCTCTTATGAAAGAGGGTG+AGG | 0.545203 | 7.1:-16095703 | MS.gene42530:CDS |
| AGTGGATCAAGAAAAGCTAC+AGG | 0.545257 | 7.1:-16088048 | MS.gene42530:CDS |
| GTGACGGTTAATCTCTGAGC+TGG | 0.545265 | 7.1:+16088697 | None:intergenic |
| AGTGCTGAGAGGAAATTGTC+TGG | 0.546123 | 7.1:-16089425 | MS.gene42530:CDS |
| TGTAGATGATTGACAAACAC+CGG | 0.546441 | 7.1:-16088425 | MS.gene42530:intron |
| TTTCCTCTCAGCACTTGCAA+AGG | 0.549766 | 7.1:+16089433 | None:intergenic |
| AGAAAGTAAACAAGTTCTGA+AGG | 0.550815 | 7.1:-16096116 | MS.gene42530:CDS |
| TTGCTTCCTCTAAGACATCC+CGG | 0.550958 | 7.1:+16088406 | None:intergenic |
| TTAATGCAGTTACTTGGGAG+AGG | 0.550972 | 7.1:-16087782 | MS.gene42530:CDS |
| AGAAAAGCTACAGGCTACAT+TGG | 0.551892 | 7.1:-16088039 | MS.gene42530:CDS |
| AGAAGGGATACATGGACGCA+TGG | 0.552642 | 7.1:-16093720 | MS.gene42530:CDS |
| AGATTGGATGAGTTTATGGA+AGG | 0.553535 | 7.1:-16087635 | MS.gene42530:CDS |
| AATAAATAACCTTATGAAAG+GGG | 0.556525 | 7.1:+16099234 | None:intergenic |
| TTCTAATTGAGAGAAGATCT+GGG | 0.561375 | 7.1:-16096536 | MS.gene42530:CDS |
| AAAAGATTTGATTGAGCACA+AGG | 0.561960 | 7.1:-16094268 | MS.gene42530:CDS |
| AAGAAAATCTTAAGGCGGAA+AGG | 0.562059 | 7.1:-16096260 | MS.gene42530:intron |
| GGACGAATTGCGTGCATCTG+AGG | 0.563169 | 7.1:-16088352 | MS.gene42530:intron |
| TCGAAACACAGTTGTTGCTA+AGG | 0.564507 | 7.1:-16089905 | MS.gene42530:CDS |
| GAAAGAAAGAGACAGCTTGG+AGG | 0.566243 | 7.1:-16096487 | MS.gene42530:intron |
| TTCTGGGCTTGACTATATTG+TGG | 0.567134 | 7.1:-16092717 | MS.gene42530:CDS |
| TCTCTATTTGAACCTTGTGA+CGG | 0.571119 | 7.1:+16088681 | None:intergenic |
| ATTGTTGACTGATGAGGAGA+GGG | 0.573441 | 7.1:-16095628 | MS.gene42530:CDS |
| TAATGCAGTTACTTGGGAGA+GGG | 0.573973 | 7.1:-16087781 | MS.gene42530:CDS |
| CATGGACGCATGGGTGACCT+AGG | 0.575540 | 7.1:-16093710 | MS.gene42530:CDS |
| TCAGAAACCTATTATTGTCA+AGG | 0.579319 | 7.1:+16097885 | None:intergenic |
| AAAGTTAAAGGAAATGTACC+AGG | 0.579516 | 7.1:-16087594 | MS.gene42530:intron |
| GGAGAAAGAAAGGTTAACTG+AGG | 0.579946 | 7.1:-16088606 | MS.gene42530:CDS |
| TTGCAGATGATTACACTTGG+TGG | 0.580494 | 7.1:-16086625 | MS.gene42530:intron |
| TTATGTGAAAGACAGGACTA+AGG | 0.587531 | 7.1:-16086146 | MS.gene42530:CDS |
| TGATATCAGATATCGGAAGA+AGG | 0.587831 | 7.1:-16087835 | MS.gene42530:intron |
| ATCTGGAACAATGAGTGGCG+GGG | 0.588929 | 7.1:-16089519 | MS.gene42530:CDS |
| TCTCTTAAAATGGAAAGAGA+AGG | 0.593950 | 7.1:-16096352 | MS.gene42530:CDS |
| AAGAAATCAAGGAGTTTGAG+AGG | 0.594358 | 7.1:-16095894 | MS.gene42530:CDS |
| CAACTATATGAAAAGACAAG+AGG | 0.594819 | 7.1:-16096074 | MS.gene42530:intron |
| TTAGATTCAGAGAAGAGTCA+GGG | 0.595974 | 7.1:-16093788 | MS.gene42530:CDS |
| CACCAAGATTCGCTCTGCGA+AGG | 0.596511 | 7.1:+16092657 | None:intergenic |
| ATTGAAGCTCTTATGAAAGA+GGG | 0.596857 | 7.1:-16095708 | MS.gene42530:CDS |
| GGACAAATAGAAGGGATACA+TGG | 0.597068 | 7.1:-16093728 | MS.gene42530:CDS |
| ATCCATTACATAAAGCGGCG+TGG | 0.599931 | 7.1:+16086310 | None:intergenic |
| TGATGCAGAACTCGAGCTTG+TGG | 0.600817 | 7.1:-16086602 | MS.gene42530:CDS |
| TATGTATGACTGCAGGAAGA+TGG | 0.600880 | 7.1:-16098046 | MS.gene42530:intron |
| GAAGGGATACATGGACGCAT+GGG | 0.601275 | 7.1:-16093719 | MS.gene42530:CDS |
| TCTAGAAAGCCTTCATCATG+AGG | 0.602664 | 7.1:+16097722 | None:intergenic |
| CCACAATTTGGATAGTGCTG+AGG | 0.603021 | 7.1:-16098928 | MS.gene42530:CDS |
| GGATGCTGTGAAGCAATACC+AGG | 0.604999 | 7.1:-16089363 | MS.gene42530:CDS |
| TACGCTGGCGAACAACGCGT+TGG | 0.605936 | 7.1:-16099257 | MS.gene42530:CDS |
| TCTGGAACAATGAGTGGCGG+GGG | 0.608526 | 7.1:-16089518 | MS.gene42530:CDS |
| CTTATGAAACCAAAATCTCA+AGG | 0.608826 | 7.1:-16097746 | MS.gene42530:CDS |
| GGCTAAGCTTCTAAGTGAGA+AGG | 0.608920 | 7.1:-16094220 | MS.gene42530:intron |
| CCTCAGCACTATCCAAATTG+TGG | 0.610119 | 7.1:+16098928 | None:intergenic |
| ACAAAGAATTGGAAATAAAG+GGG | 0.610292 | 7.1:-16088219 | MS.gene42530:CDS |
| CGGAACTTCAAATCTTACGC+TGG | 0.612204 | 7.1:-16099272 | MS.gene42530:CDS |
| TGTTGCTAAGGATCTGGACC+AGG | 0.614674 | 7.1:-16089893 | MS.gene42530:intron |
| TGGGCTTGACTATATTGTGG+TGG | 0.614719 | 7.1:-16092714 | MS.gene42530:CDS |
| AAGAGTGTAAGCACTCCAGA+GGG | 0.615160 | 7.1:-16089997 | MS.gene42530:CDS |
| AGGAAACCGGACAAATAGAA+GGG | 0.620330 | 7.1:-16093736 | MS.gene42530:CDS |
| GAGATTAATAGACTTGCTGA+CGG | 0.624261 | 7.1:-16089069 | MS.gene42530:CDS |
| AATTGTTGACTGATGAGGAG+AGG | 0.624463 | 7.1:-16095629 | MS.gene42530:CDS |
| GGGGTAGTAATCCCAAGGGT+GGG | 0.625440 | 7.1:-16089499 | MS.gene42530:CDS |
| CTAGCTGTTGATGATACAGG+TGG | 0.625963 | 7.1:-16096321 | MS.gene42530:CDS |
| CTCAGAGATTAACCGTCACA+AGG | 0.626843 | 7.1:-16088693 | MS.gene42530:CDS |
| TGAACAAGATGCTAGACAGA+AGG | 0.631428 | 7.1:-16093831 | MS.gene42530:CDS |
| TAATATGATACCAAAACTCG+AGG | 0.633160 | 7.1:-16095673 | MS.gene42530:CDS |
| TGTGAAGCAATACCAGGTCG+CGG | 0.635755 | 7.1:-16089357 | MS.gene42530:CDS |
| ACTTACCATCAATGGCACCT+AGG | 0.641403 | 7.1:+16093693 | None:intergenic |
| TGTTTGCAGATGATTACACT+TGG | 0.642191 | 7.1:-16086628 | MS.gene42530:intron |
| AAATCTGGAACAATGAGTGG+CGG | 0.642957 | 7.1:-16089521 | MS.gene42530:CDS |
| CCTAGAAGAAAATCTTAAGG+CGG | 0.646188 | 7.1:-16096265 | MS.gene42530:CDS |
| GAATTATAAGAAAACACAAG+AGG | 0.646410 | 7.1:-16088522 | MS.gene42530:intron |
| AATATTGCTAACTTATCCGG+TGG | 0.647047 | 7.1:-16086514 | MS.gene42530:CDS |
| TGGCAAACGACAAAACTGGA+CGG | 0.650265 | 7.1:+16085912 | None:intergenic |
| TCTGCGAAGGAACTCAACAC+AGG | 0.655098 | 7.1:+16092670 | None:intergenic |
| GAGTGTAAGCACTCCAGAGG+GGG | 0.656730 | 7.1:-16089995 | MS.gene42530:CDS |
| GCAACACGCATAGCATATGG+TGG | 0.659363 | 7.1:-16089593 | MS.gene42530:CDS |
| GCTGGCTAAAAGCCAGAAGG+AGG | 0.660136 | 7.1:-16089306 | MS.gene42530:intron |
| GCTTGACGTTGCATCTAGTG+AGG | 0.660861 | 7.1:-16094241 | MS.gene42530:CDS |
| ATCAAATCCACAAGAGAACG+AGG | 0.670178 | 7.1:-16089139 | MS.gene42530:CDS |
| GGAGCTGGCTAAAAGCCAGA+AGG | 0.671461 | 7.1:-16089309 | MS.gene42530:CDS |
| TCTAATTGAGAGAAGATCTG+GGG | 0.672633 | 7.1:-16096535 | MS.gene42530:CDS |
| AAGCCTTTGCAAGTGCTGAG+AGG | 0.672764 | 7.1:-16089436 | MS.gene42530:CDS |
| AAAATGGATGAGTTACAAGT+GGG | 0.673335 | 7.1:-16096297 | MS.gene42530:CDS |
| AAAGAGTGTAAGCACTCCAG+AGG | 0.677800 | 7.1:-16089998 | MS.gene42530:CDS |
| TCATCAAAGAGATGGTGATG+CGG | 0.678761 | 7.1:-16099292 | MS.gene42530:CDS |
| AAAGATTTGATTGAGCACAA+GGG | 0.679087 | 7.1:-16094267 | MS.gene42530:CDS |
| AATTGAGAGAAGATCTGGGG+TGG | 0.681873 | 7.1:-16096532 | MS.gene42530:CDS |
| ACAAGGTTCAAATAGAGACA+GGG | 0.690452 | 7.1:-16088676 | MS.gene42530:CDS |
| GTAGATGATTGACAAACACC+GGG | 0.693453 | 7.1:-16088424 | MS.gene42530:intron |
| AGGAAAATAGAGAATGCTGG+AGG | 0.694676 | 7.1:-16088856 | MS.gene42530:CDS |
| AGCATTGGAAGCTCACAGAG+TGG | 0.704040 | 7.1:-16093972 | MS.gene42530:CDS |
| TTGATGAAAAGCCTAGATGG+TGG | 0.721645 | 7.1:+16099308 | None:intergenic |
| GAAATTTAACAAGCTCAGAG+CGG | 0.731245 | 7.1:+16094313 | None:intergenic |
| AGAGTGTAAGCACTCCAGAG+GGG | 0.746694 | 7.1:-16089996 | MS.gene42530:CDS |
| AGGAGCTAGATAATGATACG+AGG | 0.761248 | 7.1:-16095927 | MS.gene42530:CDS |
| GTTAATAGAAGTACCCAGAG+CGG | 0.768533 | 7.1:+16086277 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 16085899 | 16099342 | 16085899 | ID=MS.gene42530 |
| chr7.1 | mRNA | 16085899 | 16099342 | 16085899 | ID=MS.gene42530.t1;Parent=MS.gene42530 |
| chr7.1 | exon | 16099244 | 16099342 | 16099244 | ID=MS.gene42530.t1.exon1;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16099244 | 16099342 | 16099244 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16099077 | 16099166 | 16099077 | ID=MS.gene42530.t1.exon2;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16099077 | 16099166 | 16099077 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16098896 | 16098997 | 16098896 | ID=MS.gene42530.t1.exon3;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16098896 | 16098997 | 16098896 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16097877 | 16098053 | 16097877 | ID=MS.gene42530.t1.exon4;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16097877 | 16098053 | 16097877 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16097659 | 16097789 | 16097659 | ID=MS.gene42530.t1.exon5;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16097659 | 16097789 | 16097659 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16096488 | 16096566 | 16096488 | ID=MS.gene42530.t1.exon6;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16096488 | 16096566 | 16096488 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16096261 | 16096418 | 16096261 | ID=MS.gene42530.t1.exon7;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16096261 | 16096418 | 16096261 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16096075 | 16096150 | 16096075 | ID=MS.gene42530.t1.exon8;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16096075 | 16096150 | 16096075 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16095819 | 16095947 | 16095819 | ID=MS.gene42530.t1.exon9;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16095819 | 16095947 | 16095819 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16095598 | 16095742 | 16095598 | ID=MS.gene42530.t1.exon10;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16095598 | 16095742 | 16095598 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16094221 | 16094351 | 16094221 | ID=MS.gene42530.t1.exon11;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16094221 | 16094351 | 16094221 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16093967 | 16094119 | 16093967 | ID=MS.gene42530.t1.exon12;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16093967 | 16094119 | 16093967 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16093699 | 16093888 | 16093699 | ID=MS.gene42530.t1.exon13;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16093699 | 16093888 | 16093699 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16092637 | 16092770 | 16092637 | ID=MS.gene42530.t1.exon14;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16092637 | 16092770 | 16092637 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16089894 | 16090052 | 16089894 | ID=MS.gene42530.t1.exon15;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16089894 | 16090052 | 16089894 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16089307 | 16089615 | 16089307 | ID=MS.gene42530.t1.exon16;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16089307 | 16089615 | 16089307 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16089047 | 16089223 | 16089047 | ID=MS.gene42530.t1.exon17;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16089047 | 16089223 | 16089047 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16088810 | 16088893 | 16088810 | ID=MS.gene42530.t1.exon18;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16088810 | 16088893 | 16088810 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16088523 | 16088732 | 16088523 | ID=MS.gene42530.t1.exon19;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16088523 | 16088732 | 16088523 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16088353 | 16088442 | 16088353 | ID=MS.gene42530.t1.exon20;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16088353 | 16088442 | 16088353 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16088160 | 16088281 | 16088160 | ID=MS.gene42530.t1.exon21;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16088160 | 16088281 | 16088160 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16087930 | 16088085 | 16087930 | ID=MS.gene42530.t1.exon22;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16087930 | 16088085 | 16087930 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16087741 | 16087848 | 16087741 | ID=MS.gene42530.t1.exon23;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16087741 | 16087848 | 16087741 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16087595 | 16087655 | 16087595 | ID=MS.gene42530.t1.exon24;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16087595 | 16087655 | 16087595 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16086507 | 16086641 | 16086507 | ID=MS.gene42530.t1.exon25;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16086507 | 16086641 | 16086507 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16086291 | 16086378 | 16086291 | ID=MS.gene42530.t1.exon26;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16086291 | 16086378 | 16086291 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16086124 | 16086196 | 16086124 | ID=MS.gene42530.t1.exon27;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16086124 | 16086196 | 16086124 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| chr7.1 | exon | 16085899 | 16086019 | 16085899 | ID=MS.gene42530.t1.exon28;Parent=MS.gene42530.t1 |
| chr7.1 | CDS | 16085899 | 16086019 | 16085899 | ID=cds.MS.gene42530.t1;Parent=MS.gene42530.t1 |
| Gene Sequence |
| Protein sequence |
