Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42620.t1 | XP_003603195.2 | 95.9 | 750 | 30 | 1 | 1 | 750 | 1 | 749 | 0.00E+00 | 1383.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42620.t1 | Q9LYG9 | 55.8 | 685 | 293 | 8 | 63 | 739 | 48 | 730 | 2.4e-200 | 700.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42620.t1 | G7J8D9 | 95.9 | 750 | 30 | 1 | 1 | 750 | 1 | 749 | 0.0e+00 | 1383.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42681 | MS.gene42620 | PPI |
| MS.gene42620 | MS.gene42628 | PPI |
| MS.gene42620 | MS.gene42686 | PPI |
| MS.gene42620 | MS.gene014978 | PPI |
| MS.gene42686 | MS.gene42620 | PPI |
| MS.gene32764 | MS.gene42620 | PPI |
| MS.gene42620 | MS.gene42688 | PPI |
| MS.gene062410 | MS.gene42620 | PPI |
| MS.gene42622 | MS.gene42620 | PPI |
| MS.gene42620 | MS.gene74110 | PPI |
| MS.gene42620 | MS.gene014973 | PPI |
| MS.gene32770 | MS.gene42620 | PPI |
| MS.gene42620 | MS.gene97525 | PPI |
| MS.gene32773 | MS.gene42620 | PPI |
| MS.gene42620 | MS.gene062410 | PPI |
| MS.gene42620 | MS.gene014981 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42620.t1 | MTR_3g104920 | 95.867 | 750 | 30 | 1 | 1 | 750 | 1 | 749 | 0.0 | 1453 |
| MS.gene42620.t1 | MTR_3g104920 | 95.929 | 737 | 30 | 0 | 14 | 750 | 1 | 737 | 0.0 | 1431 |
| MS.gene42620.t1 | MTR_3g104990 | 80.595 | 773 | 125 | 5 | 1 | 750 | 1 | 771 | 0.0 | 1227 |
| MS.gene42620.t1 | MTR_3g104940 | 79.070 | 774 | 136 | 3 | 1 | 750 | 1 | 772 | 0.0 | 1197 |
| MS.gene42620.t1 | MTR_2g041220 | 51.901 | 684 | 293 | 12 | 77 | 739 | 77 | 745 | 0.0 | 673 |
| MS.gene42620.t1 | MTR_8g071250 | 43.393 | 666 | 338 | 12 | 89 | 739 | 47 | 688 | 2.36e-169 | 504 |
| MS.gene42620.t1 | MTR_1g113850 | 39.003 | 682 | 356 | 12 | 120 | 748 | 241 | 915 | 4.19e-149 | 459 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42620.t1 | AT5G12080 | 57.872 | 686 | 277 | 8 | 63 | 739 | 48 | 730 | 0.0 | 798 |
| MS.gene42620.t1 | AT5G12080 | 57.872 | 686 | 277 | 8 | 63 | 739 | 48 | 730 | 0.0 | 798 |
| MS.gene42620.t1 | AT5G12080 | 57.872 | 686 | 277 | 8 | 63 | 739 | 48 | 730 | 0.0 | 798 |
| MS.gene42620.t1 | AT5G19520 | 52.670 | 693 | 310 | 8 | 59 | 739 | 52 | 738 | 0.0 | 726 |
| MS.gene42620.t1 | AT5G19520 | 52.670 | 693 | 310 | 8 | 59 | 739 | 52 | 738 | 0.0 | 726 |
| MS.gene42620.t1 | AT2G17010 | 38.532 | 654 | 362 | 8 | 122 | 740 | 240 | 888 | 1.30e-151 | 465 |
| MS.gene42620.t1 | AT1G78610 | 40.506 | 632 | 340 | 6 | 147 | 747 | 211 | 837 | 3.75e-147 | 452 |
| MS.gene42620.t1 | AT3G14810 | 38.897 | 689 | 348 | 12 | 114 | 744 | 188 | 861 | 1.60e-146 | 451 |
| MS.gene42620.t1 | AT1G53470 | 39.871 | 622 | 321 | 9 | 170 | 746 | 251 | 864 | 2.56e-146 | 450 |
| MS.gene42620.t1 | AT2G17000 | 39.867 | 602 | 324 | 7 | 179 | 748 | 234 | 829 | 1.68e-135 | 421 |
| MS.gene42620.t1 | AT2G17000 | 39.867 | 602 | 324 | 7 | 179 | 748 | 234 | 829 | 2.10e-135 | 421 |
| MS.gene42620.t1 | AT3G14810 | 36.430 | 689 | 330 | 13 | 114 | 744 | 188 | 826 | 1.39e-127 | 400 |
| MS.gene42620.t1 | AT2G17010 | 35.854 | 357 | 193 | 7 | 173 | 498 | 295 | 646 | 2.86e-61 | 218 |
Find 153 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATACTTTCAACCATATT+TGG | 0.059180 | 3.4:-91862397 | None:intergenic |
| GACACTGTTGCTATCGATTT+TGG | 0.151071 | 3.4:+91860890 | MS.gene42620:CDS |
| TTCACCTAGAACACCTTTAA+TGG | 0.166704 | 3.4:+91860371 | MS.gene42620:CDS |
| AGGATACATATTTGGAGTTT+AGG | 0.218904 | 3.4:+91860564 | MS.gene42620:CDS |
| ACAATGAACTTTCAAGAGTT+TGG | 0.224035 | 3.4:+91862700 | MS.gene42620:CDS |
| CAGCTGTTACTTCACCTTAT+AGG | 0.232327 | 3.4:+91860340 | MS.gene42620:CDS |
| CTTCTGTAATAATTGCTAAT+TGG | 0.235852 | 3.4:-91862373 | None:intergenic |
| TAGTAACATTCTCTTCTAAA+AGG | 0.249703 | 3.4:-91860296 | None:intergenic |
| ACGACACCAGCAGAGAAAAT+TGG | 0.254266 | 3.4:+91862436 | MS.gene42620:CDS |
| GCATCTCCAGGTTCTTCTTC+TGG | 0.277547 | 3.4:+91860393 | MS.gene42620:CDS |
| GGATACATATTTGGAGTTTA+GGG | 0.285104 | 3.4:+91860565 | MS.gene42620:CDS |
| TTGTTCTACAAACCTTGATT+TGG | 0.285408 | 3.4:-91860253 | None:intergenic |
| CAATGAACTTTCAAGAGTTT+GGG | 0.286227 | 3.4:+91862701 | MS.gene42620:CDS |
| AACTGAGAAGGATACATATT+TGG | 0.299045 | 3.4:+91860556 | MS.gene42620:CDS |
| TTCGGGAGTTCAACTGTTAA+AGG | 0.302616 | 3.4:+91861056 | MS.gene42620:CDS |
| ATTACTACCAAGCTGAAATT+AGG | 0.311064 | 3.4:-91862628 | None:intergenic |
| TCTAAAAGGGTCTCATCAAT+AGG | 0.325584 | 3.4:-91860282 | None:intergenic |
| CTATACTTTCAACCATATTT+GGG | 0.329682 | 3.4:-91862396 | None:intergenic |
| ATATTTGGAGTTTAGGGCTT+TGG | 0.330737 | 3.4:+91860571 | MS.gene42620:CDS |
| CATTTGAGAGAACTTGTATC+AGG | 0.336074 | 3.4:-91862835 | None:intergenic |
| TCTCTCCGGGCCTCCACTAA+TGG | 0.337430 | 3.4:+91860986 | MS.gene42620:CDS |
| CTACTGGCCCAGGCAGATAC+AGG | 0.339554 | 3.4:+91861770 | MS.gene42620:CDS |
| ACTCCGTAGATTCATGATTA+AGG | 0.340419 | 3.4:+91861724 | MS.gene42620:CDS |
| ACTCTTGTTTCCCTTCTCAT+TGG | 0.349071 | 3.4:+91860846 | MS.gene42620:CDS |
| TTCCCAGCCTCTTCCATTAG+TGG | 0.352581 | 3.4:-91860999 | None:intergenic |
| GTACTAGCGGGGTTCATGTT+TGG | 0.355463 | 3.4:+91862091 | MS.gene42620:CDS |
| TTATTACAGAAGCCCAAATA+TGG | 0.356757 | 3.4:+91862384 | MS.gene42620:CDS |
| GAACCTGGAGATGCCATTAA+AGG | 0.366672 | 3.4:-91860384 | None:intergenic |
| AACATTCTTGAAAACATAAT+AGG | 0.371862 | 3.4:-91861288 | None:intergenic |
| TGTTCTACAAACCTTGATTT+GGG | 0.374332 | 3.4:-91860252 | None:intergenic |
| GCTTAGAATACACTGATCTT+AGG | 0.375626 | 3.4:-91860230 | None:intergenic |
| CTGTATCTGCCTGGGCCAGT+AGG | 0.376769 | 3.4:-91861769 | None:intergenic |
| AGTAGTGTGGCTTCTTCTAA+TGG | 0.385108 | 3.4:+91862024 | MS.gene42620:CDS |
| TGCATCTACCAAAATCTTCA+TGG | 0.385620 | 3.4:-91861150 | None:intergenic |
| TAGTCGCTAGTCTCTTATGC+TGG | 0.386965 | 3.4:-91860464 | None:intergenic |
| CTTTCAAGAGTTTGGGGAGA+AGG | 0.394006 | 3.4:+91862708 | MS.gene42620:CDS |
| TCAGTTTGGTTCTCCTTACA+TGG | 0.394428 | 3.4:+91860754 | MS.gene42620:CDS |
| GGTGAATAAGAGTTCCTATA+AGG | 0.395222 | 3.4:-91860354 | None:intergenic |
| TCAACCCATGATCATGATCT+TGG | 0.398144 | 3.4:-91860062 | None:intergenic |
| AGAGAAAGAGGTTATTGATA+TGG | 0.399291 | 3.4:+91861085 | MS.gene42620:CDS |
| ATAATTGCTAATTGGTTTAG+TGG | 0.405746 | 3.4:-91862365 | None:intergenic |
| TAATTAGCCCTGTATCTGCC+TGG | 0.406972 | 3.4:-91861778 | None:intergenic |
| GATGCCATTAAAGGTGTTCT+AGG | 0.410220 | 3.4:-91860375 | None:intergenic |
| CATTTGTAGCAGGAACTTGT+GGG | 0.411786 | 3.4:-91860182 | None:intergenic |
| GGAGTTTAGGGCTTTGGAGG+TGG | 0.414476 | 3.4:+91860577 | MS.gene42620:CDS |
| ATCCTGACGAAATCATTTAT+AGG | 0.416707 | 3.4:+91860421 | MS.gene42620:CDS |
| TGTATCTGCCTGGGCCAGTA+GGG | 0.421172 | 3.4:-91861768 | None:intergenic |
| TTAGTGGCGAGGGCAGAGTT+TGG | 0.428516 | 3.4:-91862349 | None:intergenic |
| TGCCTATAAATGATTTCGTC+AGG | 0.429312 | 3.4:-91860423 | None:intergenic |
| AACAATGTGCATGAACCATT+TGG | 0.430283 | 3.4:-91860640 | None:intergenic |
| TTTGGAGTTTAGGGCTTTGG+AGG | 0.436552 | 3.4:+91860574 | MS.gene42620:CDS |
| TATGTTCTGCAGACTCTCTC+CGG | 0.438869 | 3.4:+91860972 | MS.gene42620:CDS |
| GAGTCTGCAGAACATATTGA+TGG | 0.441671 | 3.4:-91860965 | None:intergenic |
| ATGGAAGAGGCTGGGAAAAT+CGG | 0.443550 | 3.4:+91861005 | MS.gene42620:CDS |
| GGTTGAAAGTATAGAGTTCT+CGG | 0.444414 | 3.4:+91862405 | MS.gene42620:CDS |
| TCATTTGTAGCAGGAACTTG+TGG | 0.446523 | 3.4:-91860183 | None:intergenic |
| TTGGCTTGTTAGTTACCAAA+TGG | 0.451486 | 3.4:+91860625 | MS.gene42620:CDS |
| CTTGAAGCTTAATAATGAAA+AGG | 0.456438 | 3.4:+91862318 | MS.gene42620:CDS |
| GGCGTGGACCATGAAGATTT+TGG | 0.456683 | 3.4:+91861142 | MS.gene42620:CDS |
| ATCAAGTGAATTAGAGATTG+TGG | 0.457488 | 3.4:-91861192 | None:intergenic |
| CTAAAAGGGTCTCATCAATA+GGG | 0.461269 | 3.4:-91860281 | None:intergenic |
| GGCGATCGATGTGTTGTAGA+TGG | 0.464642 | 3.4:+91862178 | MS.gene42620:CDS |
| GTGTGTCGTGGGTATCTTGT+TGG | 0.466820 | 3.4:+91860515 | MS.gene42620:CDS |
| CGGAGAGGAATCCACAATAC+TGG | 0.472256 | 3.4:+91862602 | MS.gene42620:CDS |
| AGTAACATTCTCTTCTAAAA+GGG | 0.482726 | 3.4:-91860295 | None:intergenic |
| CTCTTCCATTAGTGGAGGCC+CGG | 0.490275 | 3.4:-91860991 | None:intergenic |
| CATGACCAAGATCATGATCA+TGG | 0.492732 | 3.4:+91860057 | MS.gene42620:CDS |
| ACTGTGCTTCTCCTGAGATA+AGG | 0.493811 | 3.4:+91860136 | MS.gene42620:CDS |
| CAATTAAACAAGCTTGTGAC+AGG | 0.494751 | 3.4:+91861980 | MS.gene42620:CDS |
| CTTCCTTAATCATGAATCTA+CGG | 0.496022 | 3.4:-91861727 | None:intergenic |
| AAATGTAAATAAGATTAAGA+TGG | 0.497083 | 3.4:+91862660 | MS.gene42620:CDS |
| GCATAAGAGACTAGCGACTA+AGG | 0.497296 | 3.4:+91860467 | MS.gene42620:CDS |
| TGTATTTCCCCTACTGGCCC+AGG | 0.497804 | 3.4:+91861760 | MS.gene42620:CDS |
| AGTCGCTAGTCTCTTATGCT+GGG | 0.498583 | 3.4:-91860463 | None:intergenic |
| TTGCGGCTAATTTAGATCGC+TGG | 0.498595 | 3.4:-91860800 | None:intergenic |
| TCCAGGTTCTTCTTCTGGTG+AGG | 0.503770 | 3.4:+91860398 | MS.gene42620:CDS |
| CATCGATCGCCAACATCGAA+TGG | 0.504479 | 3.4:-91862166 | None:intergenic |
| AATGTAAATAAGATTAAGAT+GGG | 0.505449 | 3.4:+91862661 | MS.gene42620:CDS |
| CCTCCACTAATGGAAGAGGC+TGG | 0.505601 | 3.4:+91860996 | MS.gene42620:CDS |
| TTCATGTTTGTGTGTGTCGT+GGG | 0.518234 | 3.4:+91860504 | MS.gene42620:CDS |
| TTGAACTCCCGAAACTAAAA+CGG | 0.519838 | 3.4:-91861046 | None:intergenic |
| CTTGGGGTGAACCTTATCTC+AGG | 0.520160 | 3.4:-91860147 | None:intergenic |
| CATTACAAACACAAAGATGA+TGG | 0.521560 | 3.4:-91862140 | None:intergenic |
| CTATATTCTTACTTGCAACA+AGG | 0.521854 | 3.4:-91861320 | None:intergenic |
| TGGGTTGAAGCAATGTGTCC+AGG | 0.522262 | 3.4:+91860719 | MS.gene42620:CDS |
| TGTATTCTAAGCCCAAATCA+AGG | 0.522553 | 3.4:+91860241 | MS.gene42620:CDS |
| ATCGGCAGATCTCAAAGTAT+TGG | 0.525382 | 3.4:+91861023 | MS.gene42620:CDS |
| TCATCACAGCTAGTACTAGC+GGG | 0.526862 | 3.4:+91862079 | MS.gene42620:CDS |
| TCGGAAAAGTGAACTAGTGA+TGG | 0.532064 | 3.4:+91862735 | MS.gene42620:CDS |
| AAATTAGGATGCCAGTATTG+TGG | 0.533187 | 3.4:-91862613 | None:intergenic |
| GCCAGTAGGGGAAATACAAA+AGG | 0.533230 | 3.4:-91861755 | None:intergenic |
| TGATAAATAGTACCCATGTA+AGG | 0.534123 | 3.4:-91860767 | None:intergenic |
| TCCTCACCAGAAGAAGAACC+TGG | 0.538196 | 3.4:-91860399 | None:intergenic |
| GATGAACACCTTGTGGAAGA+AGG | 0.541949 | 3.4:-91862798 | None:intergenic |
| CGGGCCTCCACTAATGGAAG+AGG | 0.542792 | 3.4:+91860992 | MS.gene42620:CDS |
| ACACCTTTAATGGCATCTCC+AGG | 0.542913 | 3.4:+91860381 | MS.gene42620:CDS |
| TGCTAATTGGTTTAGTGGCG+AGG | 0.543238 | 3.4:-91862360 | None:intergenic |
| CCAGCCTCTTCCATTAGTGG+AGG | 0.543767 | 3.4:-91860996 | None:intergenic |
| GAGGTGGTGTATGCTTGTGA+TGG | 0.544535 | 3.4:+91860593 | MS.gene42620:CDS |
| TAAAGAAATTACTAATGAGA+TGG | 0.545783 | 3.4:+91861250 | MS.gene42620:CDS |
| CTCCACTAATGGAAGAGGCT+GGG | 0.547360 | 3.4:+91860997 | MS.gene42620:CDS |
| AACTGATCCAAATGAAAACC+TGG | 0.550631 | 3.4:-91860737 | None:intergenic |
| GTTCATGTTTGTGTGTGTCG+TGG | 0.551999 | 3.4:+91860503 | MS.gene42620:CDS |
| GGACACATTGCTTCAACCCA+TGG | 0.552760 | 3.4:-91860716 | None:intergenic |
| AATTAGCCCTGTATCTGCCT+GGG | 0.553573 | 3.4:-91861777 | None:intergenic |
| ATGTTCTGCAGACTCTCTCC+GGG | 0.553700 | 3.4:+91860973 | MS.gene42620:CDS |
| CAGTTTGGTTCTCCTTACAT+GGG | 0.553964 | 3.4:+91860755 | MS.gene42620:CDS |
| CTGGCATCCTAATTTCAGCT+TGG | 0.555043 | 3.4:+91862621 | MS.gene42620:CDS |
| ATTTGTAGCAGGAACTTGTG+GGG | 0.558637 | 3.4:-91860181 | None:intergenic |
| TAAAGGTGGCACAGAGAAAG+AGG | 0.562858 | 3.4:+91861073 | MS.gene42620:CDS |
| GTAATGCATCCATTCGATGT+TGG | 0.562974 | 3.4:+91862157 | MS.gene42620:CDS |
| GATGGTAACAATAAGCATCA+AGG | 0.568612 | 3.4:+91859961 | MS.gene42620:CDS |
| TATATTCTTACTTGCAACAA+GGG | 0.569030 | 3.4:-91861319 | None:intergenic |
| TAGATGCAGTGATGAATTCA+AGG | 0.569731 | 3.4:+91861165 | MS.gene42620:CDS |
| GAAGAAAAGAGAAGTGGTGG+TGG | 0.569818 | 3.4:+91860005 | MS.gene42620:CDS |
| CATGATCATGATCTTGGTCA+TGG | 0.572577 | 3.4:-91860056 | None:intergenic |
| AGGTGGTGAAGTAAACATGA+TGG | 0.572945 | 3.4:+91859981 | MS.gene42620:CDS |
| TTTGTAGCAGGAACTTGTGG+GGG | 0.574718 | 3.4:-91860180 | None:intergenic |
| AGTTTGGGGAGAAGGTGAAT+CGG | 0.586028 | 3.4:+91862716 | MS.gene42620:CDS |
| TTATCAAGAACGTAAAGCAC+TGG | 0.590875 | 3.4:+91861922 | MS.gene42620:CDS |
| TGCTTAGGTTGATGAATGGA+TGG | 0.601864 | 3.4:+91859943 | None:intergenic |
| GCTAATTGGTTTAGTGGCGA+GGG | 0.603953 | 3.4:-91862359 | None:intergenic |
| GTATCTGCCTGGGCCAGTAG+GGG | 0.605173 | 3.4:-91861767 | None:intergenic |
| GATCAAAGAAAGATTTGACA+TGG | 0.605754 | 3.4:-91860923 | None:intergenic |
| GGTTTCTGAATGATGTAACA+TGG | 0.606401 | 3.4:+91860823 | MS.gene42620:CDS |
| AAAGTCTTTAGCAGATTGGG+TGG | 0.609117 | 3.4:+91861805 | MS.gene42620:CDS |
| CTCATCACAGCTAGTACTAG+CGG | 0.611663 | 3.4:+91862078 | MS.gene42620:CDS |
| ATGACCAAGATCATGATCAT+GGG | 0.612435 | 3.4:+91860058 | MS.gene42620:CDS |
| AGCGATCTAAATTAGCCGCA+AGG | 0.612871 | 3.4:+91860802 | MS.gene42620:CDS |
| AATTAAACAAGCTTGTGACA+GGG | 0.617603 | 3.4:+91861981 | MS.gene42620:CDS |
| TACATCATTCAGAAACCTTG+CGG | 0.619295 | 3.4:-91860817 | None:intergenic |
| CTAGTACTAGCTGTGATGAG+AGG | 0.620783 | 3.4:-91862075 | None:intergenic |
| GGGAGTTCAACTGTTAAAGG+TGG | 0.622194 | 3.4:+91861059 | MS.gene42620:CDS |
| GGTGGTGGCAATTTCAAATG+TGG | 0.624592 | 3.4:+91860020 | MS.gene42620:CDS |
| GATGGAGAAGAAAAGAGAAG+TGG | 0.625504 | 3.4:+91859999 | MS.gene42620:CDS |
| TGTGACAGGGGTCTTAGTAG+TGG | 0.625559 | 3.4:+91861994 | MS.gene42620:CDS |
| GGTACTATTTATCAATCATG+AGG | 0.633489 | 3.4:+91860776 | MS.gene42620:CDS |
| GATGAAGCAAGAGAAAGTCT+CGG | 0.637612 | 3.4:+91861121 | MS.gene42620:CDS |
| ATTAAACAAGCTTGTGACAG+GGG | 0.640205 | 3.4:+91861982 | MS.gene42620:CDS |
| ATATTCTTACTTGCAACAAG+GGG | 0.645688 | 3.4:-91861318 | None:intergenic |
| TATCTGAGATGAACACCTTG+TGG | 0.649979 | 3.4:-91862805 | None:intergenic |
| GGAGAAGAAAAGAGAAGTGG+TGG | 0.653179 | 3.4:+91860002 | MS.gene42620:CDS |
| TAACAGCTGAGGAACTGAGA+AGG | 0.655836 | 3.4:+91860544 | MS.gene42620:CDS |
| TACTGGCCCAGGCAGATACA+GGG | 0.658380 | 3.4:+91861771 | MS.gene42620:CDS |
| AATGAACTTTCAAGAGTTTG+GGG | 0.659127 | 3.4:+91862702 | MS.gene42620:CDS |
| GTGGTGGCAATTTCAAATGT+GGG | 0.661574 | 3.4:+91860021 | MS.gene42620:CDS |
| AGCAAGAGAAAGTCTCGGCG+TGG | 0.668540 | 3.4:+91861126 | MS.gene42620:CDS |
| GTTGGCTAGCATAACAGCTG+AGG | 0.671221 | 3.4:+91860533 | MS.gene42620:CDS |
| ATGTGTTGTAGATGGTGTTG+AGG | 0.674889 | 3.4:+91862186 | MS.gene42620:CDS |
| TAGTGGTGAGCATAGTAGTG+TGG | 0.676510 | 3.4:+91862011 | MS.gene42620:CDS |
| CATCACAGCTAGTACTAGCG+GGG | 0.699530 | 3.4:+91862080 | MS.gene42620:CDS |
| AGATACAGCCTTCTTCCACA+AGG | 0.711384 | 3.4:+91862790 | MS.gene42620:CDS |
| GGTAACAATAAGCATCAAGG+TGG | 0.751134 | 3.4:+91859964 | MS.gene42620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAAAAAAAAAAAAAT+AGG | + | chr3.4:91862575-91862594 | MS.gene42620:intron | 0.0% |
| !! | AAATGTAAATAAGATTAAGA+TGG | + | chr3.4:91862660-91862679 | MS.gene42620:CDS | 15.0% |
| !! | AATGTAAATAAGATTAAGAT+GGG | + | chr3.4:91862661-91862680 | MS.gene42620:CDS | 15.0% |
| !!! | ATATAGAATGCATTATTTTT+TGG | + | chr3.4:91861337-91861356 | MS.gene42620:intron | 15.0% |
| !!! | ATTAATTTGTATATCCAATT+TGG | + | chr3.4:91861605-91861624 | MS.gene42620:intron | 15.0% |
| !!! | TATAGAATGCATTATTTTTT+GGG | + | chr3.4:91861338-91861357 | MS.gene42620:intron | 15.0% |
| !!! | TTAATTTGTATATCCAATTT+GGG | + | chr3.4:91861606-91861625 | MS.gene42620:intron | 15.0% |
| !! | AAAAAAAAAAAATAGGTACG+CGG | + | chr3.4:91862582-91862601 | MS.gene42620:intron | 20.0% |
| !! | AACATTCTTGAAAACATAAT+AGG | - | chr3.4:91861291-91861310 | None:intergenic | 20.0% |
| !! | TAAAGAAATTACTAATGAGA+TGG | + | chr3.4:91861250-91861269 | MS.gene42620:CDS | 20.0% |
| !! | TCAAATAAGTCAATGTAAAT+AGG | - | chr3.4:91861420-91861439 | None:intergenic | 20.0% |
| !!! | ATAGAATGCATTATTTTTTG+GGG | + | chr3.4:91861339-91861358 | MS.gene42620:intron | 20.0% |
| !!! | GAAAAGTTTTATCACAAATT+TGG | + | chr3.4:91862493-91862512 | MS.gene42620:intron | 20.0% |
| !!! | TGTTTGTATTTTTCAGTTAA+AGG | + | chr3.4:91861898-91861917 | MS.gene42620:intron | 20.0% |
| ! | AGTTATCATCATCATAATGA+AGG | + | chr3.4:91861851-91861870 | MS.gene42620:intron | 25.0% |
| ! | CTATACTTTCAACCATATTT+GGG | - | chr3.4:91862399-91862418 | None:intergenic | 25.0% |
| ! | CTTCTGTAATAATTGCTAAT+TGG | - | chr3.4:91862376-91862395 | None:intergenic | 25.0% |
| ! | CTTGAAGCTTAATAATGAAA+AGG | + | chr3.4:91862318-91862337 | MS.gene42620:CDS | 25.0% |
| ! | TAGCTAATGAAAACAACTTA+TGG | + | chr3.4:91861528-91861547 | MS.gene42620:intron | 25.0% |
| ! | TAGTAACATTCTCTTCTAAA+AGG | - | chr3.4:91860299-91860318 | None:intergenic | 25.0% |
| ! | TATATTCTTACTTGCAACAA+GGG | - | chr3.4:91861322-91861341 | None:intergenic | 25.0% |
| ! | TATTGATGCATTGAATTATC+TGG | + | chr3.4:91862254-91862273 | MS.gene42620:intron | 25.0% |
| ! | TCTATACTTTCAACCATATT+TGG | - | chr3.4:91862400-91862419 | None:intergenic | 25.0% |
| !! | AGTAACATTCTCTTCTAAAA+GGG | - | chr3.4:91860298-91860317 | None:intergenic | 25.0% |
| !! | ATAATTGCTAATTGGTTTAG+TGG | - | chr3.4:91862368-91862387 | None:intergenic | 25.0% |
| !! | GAACTTTTTGTTGAAGAAAA+AGG | + | chr3.4:91860680-91860699 | MS.gene42620:CDS | 25.0% |
| !!! | AGAGTTATTGTTGCTTTTAA+GGG | + | chr3.4:91861394-91861413 | MS.gene42620:intron | 25.0% |
| !!! | ATAAGTTGTTTTCATTAGCT+AGG | - | chr3.4:91861529-91861548 | None:intergenic | 25.0% |
| !!! | TAGAATGCATTATTTTTTGG+GGG | + | chr3.4:91861340-91861359 | MS.gene42620:intron | 25.0% |
| !!! | TAGAGTTATTGTTGCTTTTA+AGG | + | chr3.4:91861393-91861412 | MS.gene42620:intron | 25.0% |
| !!! | TTTTAGAAGAGAATGTTACT+AGG | + | chr3.4:91860298-91860317 | MS.gene42620:CDS | 25.0% |
| AACTGAGAAGGATACATATT+TGG | + | chr3.4:91860556-91860575 | MS.gene42620:CDS | 30.0% | |
| AAGAGTGGTATATCAAAACA+AGG | - | chr3.4:91861653-91861672 | None:intergenic | 30.0% | |
| AATGAACTTTCAAGAGTTTG+GGG | + | chr3.4:91862702-91862721 | MS.gene42620:CDS | 30.0% | |
| AATGTCCCTATTCATAAAGA+GGG | - | chr3.4:91861693-91861712 | None:intergenic | 30.0% | |
| AATTAAACAAGCTTGTGACA+GGG | + | chr3.4:91861981-91862000 | MS.gene42620:CDS | 30.0% | |
| ACAAACATTATAGTCGAAAC+AGG | - | chr3.4:91861885-91861904 | None:intergenic | 30.0% | |
| ACAATGAACTTTCAAGAGTT+TGG | + | chr3.4:91862700-91862719 | MS.gene42620:CDS | 30.0% | |
| AGAGAAAGAGGTTATTGATA+TGG | + | chr3.4:91861085-91861104 | MS.gene42620:CDS | 30.0% | |
| ATATACATTTAGGCCCAAAT+TGG | - | chr3.4:91861622-91861641 | None:intergenic | 30.0% | |
| ATATTCTTACTTGCAACAAG+GGG | - | chr3.4:91861321-91861340 | None:intergenic | 30.0% | |
| ATCAAGTGAATTAGAGATTG+TGG | - | chr3.4:91861195-91861214 | None:intergenic | 30.0% | |
| ATCCTGACGAAATCATTTAT+AGG | + | chr3.4:91860421-91860440 | MS.gene42620:CDS | 30.0% | |
| ATTACTACCAAGCTGAAATT+AGG | - | chr3.4:91862631-91862650 | None:intergenic | 30.0% | |
| CAAAAAGTCTTTAGCAGATT+GGG | + | chr3.4:91861802-91861821 | MS.gene42620:CDS | 30.0% | |
| CAATGAACTTTCAAGAGTTT+GGG | + | chr3.4:91862701-91862720 | MS.gene42620:CDS | 30.0% | |
| CACTGAAAGAAAAAATAACG+AGG | + | chr3.4:91862461-91862480 | MS.gene42620:CDS | 30.0% | |
| CATTACAAACACAAAGATGA+TGG | - | chr3.4:91862143-91862162 | None:intergenic | 30.0% | |
| CTATATTCTTACTTGCAACA+AGG | - | chr3.4:91861323-91861342 | None:intergenic | 30.0% | |
| CTTCCTTAATCATGAATCTA+CGG | - | chr3.4:91861730-91861749 | None:intergenic | 30.0% | |
| GATCAAAGAAAGATTTGACA+TGG | - | chr3.4:91860926-91860945 | None:intergenic | 30.0% | |
| GATGTAAAAAATGAACGAAC+TGG | + | chr3.4:91861227-91861246 | MS.gene42620:CDS | 30.0% | |
| GGTACTATTTATCAATCATG+AGG | + | chr3.4:91860776-91860795 | MS.gene42620:CDS | 30.0% | |
| GTATATCAAAACAAGGAGAA+GGG | - | chr3.4:91861646-91861665 | None:intergenic | 30.0% | |
| TGATAAATAGTACCCATGTA+AGG | - | chr3.4:91860770-91860789 | None:intergenic | 30.0% | |
| TGTTCTACAAACCTTGATTT+GGG | - | chr3.4:91860255-91860274 | None:intergenic | 30.0% | |
| TTATTACAGAAGCCCAAATA+TGG | + | chr3.4:91862384-91862403 | MS.gene42620:CDS | 30.0% | |
| TTGTTCTACAAACCTTGATT+TGG | - | chr3.4:91860256-91860275 | None:intergenic | 30.0% | |
| ! | AGGATACATATTTGGAGTTT+AGG | + | chr3.4:91860564-91860583 | MS.gene42620:CDS | 30.0% |
| ! | GGATACATATTTGGAGTTTA+GGG | + | chr3.4:91860565-91860584 | MS.gene42620:CDS | 30.0% |
| AAATTAGGATGCCAGTATTG+TGG | - | chr3.4:91862616-91862635 | None:intergenic | 35.0% | |
| AACAATGTGCATGAACCATT+TGG | - | chr3.4:91860643-91860662 | None:intergenic | 35.0% | |
| AACTGATCCAAATGAAAACC+TGG | - | chr3.4:91860740-91860759 | None:intergenic | 35.0% | |
| AATGTGCCCTCTTTATGAAT+AGG | + | chr3.4:91861684-91861703 | MS.gene42620:intron | 35.0% | |
| ACAAAAATGCTCCAATGAGA+AGG | - | chr3.4:91860860-91860879 | None:intergenic | 35.0% | |
| ACTCCGTAGATTCATGATTA+AGG | + | chr3.4:91861724-91861743 | MS.gene42620:CDS | 35.0% | |
| ATGACCAAGATCATGATCAT+GGG | + | chr3.4:91860058-91860077 | MS.gene42620:CDS | 35.0% | |
| ATGTGCCCTCTTTATGAATA+GGG | + | chr3.4:91861685-91861704 | MS.gene42620:intron | 35.0% | |
| ATTAAACAAGCTTGTGACAG+GGG | + | chr3.4:91861982-91862001 | MS.gene42620:CDS | 35.0% | |
| CAAAAATGCTCCAATGAGAA+GGG | - | chr3.4:91860859-91860878 | None:intergenic | 35.0% | |
| CAATGTCCCTATTCATAAAG+AGG | - | chr3.4:91861694-91861713 | None:intergenic | 35.0% | |
| CAATTAAACAAGCTTGTGAC+AGG | + | chr3.4:91861980-91861999 | MS.gene42620:CDS | 35.0% | |
| CATTTGAGAGAACTTGTATC+AGG | - | chr3.4:91862838-91862857 | None:intergenic | 35.0% | |
| CCAAAAAGTCTTTAGCAGAT+TGG | + | chr3.4:91861801-91861820 | MS.gene42620:CDS | 35.0% | |
| CTAAAAGGGTCTCATCAATA+GGG | - | chr3.4:91860284-91860303 | None:intergenic | 35.0% | |
| CTGTATACACATTTGTGAGA+CGG | + | chr3.4:91861457-91861476 | MS.gene42620:intron | 35.0% | |
| GATGGTAACAATAAGCATCA+AGG | + | chr3.4:91859961-91859980 | MS.gene42620:CDS | 35.0% | |
| GCTTAGAATACACTGATCTT+AGG | - | chr3.4:91860233-91860252 | None:intergenic | 35.0% | |
| GGTATATCAAAACAAGGAGA+AGG | - | chr3.4:91861647-91861666 | None:intergenic | 35.0% | |
| GGTGAATAAGAGTTCCTATA+AGG | - | chr3.4:91860357-91860376 | None:intergenic | 35.0% | |
| GGTTTCTGAATGATGTAACA+TGG | + | chr3.4:91860823-91860842 | MS.gene42620:CDS | 35.0% | |
| TACATCATTCAGAAACCTTG+CGG | - | chr3.4:91860820-91860839 | None:intergenic | 35.0% | |
| TAGATGCAGTGATGAATTCA+AGG | + | chr3.4:91861165-91861184 | MS.gene42620:CDS | 35.0% | |
| TCTAAAAGGGTCTCATCAAT+AGG | - | chr3.4:91860285-91860304 | None:intergenic | 35.0% | |
| TGCATCTACCAAAATCTTCA+TGG | - | chr3.4:91861153-91861172 | None:intergenic | 35.0% | |
| TGCCTATAAATGATTTCGTC+AGG | - | chr3.4:91860426-91860445 | None:intergenic | 35.0% | |
| TGTATTCTAAGCCCAAATCA+AGG | + | chr3.4:91860241-91860260 | MS.gene42620:CDS | 35.0% | |
| TTATCAAGAACGTAAAGCAC+TGG | + | chr3.4:91861922-91861941 | MS.gene42620:CDS | 35.0% | |
| TTCACCTAGAACACCTTTAA+TGG | + | chr3.4:91860371-91860390 | MS.gene42620:CDS | 35.0% | |
| TTGAACTCCCGAAACTAAAA+CGG | - | chr3.4:91861049-91861068 | None:intergenic | 35.0% | |
| TTGAATTATCTGGCAGCTAT+TGG | + | chr3.4:91862264-91862283 | MS.gene42620:intron | 35.0% | |
| ! | AATGTGTCCAGGTTTTCATT+TGG | + | chr3.4:91860730-91860749 | MS.gene42620:CDS | 35.0% |
| ! | ATATTTGGAGTTTAGGGCTT+TGG | + | chr3.4:91860571-91860590 | MS.gene42620:CDS | 35.0% |
| ! | CCAATCTGCTAAAGACTTTT+TGG | - | chr3.4:91861804-91861823 | None:intergenic | 35.0% |
| ! | GGTTGAAAGTATAGAGTTCT+CGG | + | chr3.4:91862405-91862424 | MS.gene42620:CDS | 35.0% |
| ! | GGTTTTCATTTGGATCAGTT+TGG | + | chr3.4:91860740-91860759 | MS.gene42620:CDS | 35.0% |
| ! | GTAAGGTTTTCATTTGTAGC+AGG | - | chr3.4:91860195-91860214 | None:intergenic | 35.0% |
| !! | CATTTTAGCAACAACAAGAG+TGG | - | chr3.4:91861668-91861687 | None:intergenic | 35.0% |
| !! | TCTCATTGGAGCATTTTTGT+GGG | + | chr3.4:91860860-91860879 | MS.gene42620:CDS | 35.0% |
| !! | TTCTCATTGGAGCATTTTTG+TGG | + | chr3.4:91860859-91860878 | MS.gene42620:CDS | 35.0% |
| !! | TTGGCTTGTTAGTTACCAAA+TGG | + | chr3.4:91860625-91860644 | MS.gene42620:CDS | 35.0% |
| !!! | AAGGTGCTTTATTTTGTCCA+TGG | + | chr3.4:91860699-91860718 | MS.gene42620:CDS | 35.0% |
| !!! | AGGTGCTTTATTTTGTCCAT+GGG | + | chr3.4:91860700-91860719 | MS.gene42620:CDS | 35.0% |
| !!! | AGTATTGGCCGTTTTAGTTT+CGG | + | chr3.4:91861038-91861057 | MS.gene42620:CDS | 35.0% |
| !!! | CTTGTGATGGTGACATTTTT+TGG | + | chr3.4:91860606-91860625 | MS.gene42620:CDS | 35.0% |
| AAAAAAATAGGTACGCGGAG+AGG | + | chr3.4:91862587-91862606 | MS.gene42620:intron | 40.0% | |
| AAAGTCTTTAGCAGATTGGG+TGG | + | chr3.4:91861805-91861824 | MS.gene42620:CDS | 40.0% | |
| AGGTGGTGAAGTAAACATGA+TGG | + | chr3.4:91859981-91860000 | MS.gene42620:CDS | 40.0% | |
| AGTAGTGTGGCTTCTTCTAA+TGG | + | chr3.4:91862024-91862043 | MS.gene42620:CDS | 40.0% | |
| ATCGGCAGATCTCAAAGTAT+TGG | + | chr3.4:91861023-91861042 | MS.gene42620:CDS | 40.0% | |
| ATTTGTAGCAGGAACTTGTG+GGG | - | chr3.4:91860184-91860203 | None:intergenic | 40.0% | |
| CATGACCAAGATCATGATCA+TGG | + | chr3.4:91860057-91860076 | MS.gene42620:CDS | 40.0% | |
| CATGATCATGATCTTGGTCA+TGG | - | chr3.4:91860059-91860078 | None:intergenic | 40.0% | |
| CATTTGTAGCAGGAACTTGT+GGG | - | chr3.4:91860185-91860204 | None:intergenic | 40.0% | |
| GAGTCTGCAGAACATATTGA+TGG | - | chr3.4:91860968-91860987 | None:intergenic | 40.0% | |
| GATGAAGCAAGAGAAAGTCT+CGG | + | chr3.4:91861121-91861140 | MS.gene42620:CDS | 40.0% | |
| GATGGAGAAGAAAAGAGAAG+TGG | + | chr3.4:91859999-91860018 | MS.gene42620:CDS | 40.0% | |
| GGTAACAATAAGCATCAAGG+TGG | + | chr3.4:91859964-91859983 | MS.gene42620:CDS | 40.0% | |
| GTAATGCATCCATTCGATGT+TGG | + | chr3.4:91862157-91862176 | MS.gene42620:CDS | 40.0% | |
| GTGGTGGCAATTTCAAATGT+GGG | + | chr3.4:91860021-91860040 | MS.gene42620:CDS | 40.0% | |
| TCAACCCATGATCATGATCT+TGG | - | chr3.4:91860065-91860084 | None:intergenic | 40.0% | |
| TCATTTGTAGCAGGAACTTG+TGG | - | chr3.4:91860186-91860205 | None:intergenic | 40.0% | |
| TCGGAAAAGTGAACTAGTGA+TGG | + | chr3.4:91862735-91862754 | MS.gene42620:CDS | 40.0% | |
| TTCATGTTTGTGTGTGTCGT+GGG | + | chr3.4:91860504-91860523 | MS.gene42620:CDS | 40.0% | |
| TTCGGGAGTTCAACTGTTAA+AGG | + | chr3.4:91861056-91861075 | MS.gene42620:CDS | 40.0% | |
| ! | ACTCTTGTTTCCCTTCTCAT+TGG | + | chr3.4:91860846-91860865 | MS.gene42620:CDS | 40.0% |
| ! | ATGTGTTGTAGATGGTGTTG+AGG | + | chr3.4:91862186-91862205 | MS.gene42620:CDS | 40.0% |
| ! | CAGCTGTTACTTCACCTTAT+AGG | + | chr3.4:91860340-91860359 | MS.gene42620:CDS | 40.0% |
| ! | GGAGAAGGGCATATACATTT+AGG | - | chr3.4:91861632-91861651 | None:intergenic | 40.0% |
| ! | TATCTGAGATGAACACCTTG+TGG | - | chr3.4:91862808-91862827 | None:intergenic | 40.0% |
| ! | TCCTTTTGTATTTCCCCTAC+TGG | + | chr3.4:91861754-91861773 | MS.gene42620:CDS | 40.0% |
| ! | TCTTAGGAGAGTTTTTCTCG+TGG | - | chr3.4:91860217-91860236 | None:intergenic | 40.0% |
| !! | CAGTTTGGTTCTCCTTACAT+GGG | + | chr3.4:91860755-91860774 | MS.gene42620:CDS | 40.0% |
| !! | GATGCCATTAAAGGTGTTCT+AGG | - | chr3.4:91860378-91860397 | None:intergenic | 40.0% |
| !! | TCAGTTTGGTTCTCCTTACA+TGG | + | chr3.4:91860754-91860773 | MS.gene42620:CDS | 40.0% |
| !!! | GACACTGTTGCTATCGATTT+TGG | + | chr3.4:91860890-91860909 | MS.gene42620:CDS | 40.0% |
| !!! | GTATTGGCCGTTTTAGTTTC+GGG | + | chr3.4:91861039-91861058 | MS.gene42620:CDS | 40.0% |
| AATTAGCCCTGTATCTGCCT+GGG | - | chr3.4:91861780-91861799 | None:intergenic | 45.0% | |
| ACACCTTTAATGGCATCTCC+AGG | + | chr3.4:91860381-91860400 | MS.gene42620:CDS | 45.0% | |
| ACGACACCAGCAGAGAAAAT+TGG | + | chr3.4:91862436-91862455 | MS.gene42620:CDS | 45.0% | |
| ACTGTGCTTCTCCTGAGATA+AGG | + | chr3.4:91860136-91860155 | MS.gene42620:CDS | 45.0% | |
| AGATACAGCCTTCTTCCACA+AGG | + | chr3.4:91862790-91862809 | MS.gene42620:CDS | 45.0% | |
| AGCGATCTAAATTAGCCGCA+AGG | + | chr3.4:91860802-91860821 | MS.gene42620:CDS | 45.0% | |
| AGTTTGGGGAGAAGGTGAAT+CGG | + | chr3.4:91862716-91862735 | MS.gene42620:CDS | 45.0% | |
| ATGGAAGAGGCTGGGAAAAT+CGG | + | chr3.4:91861005-91861024 | MS.gene42620:CDS | 45.0% | |
| CTAGTACTAGCTGTGATGAG+AGG | - | chr3.4:91862078-91862097 | None:intergenic | 45.0% | |
| CTCATCACAGCTAGTACTAG+CGG | + | chr3.4:91862078-91862097 | MS.gene42620:CDS | 45.0% | |
| CTGGCATCCTAATTTCAGCT+TGG | + | chr3.4:91862621-91862640 | MS.gene42620:CDS | 45.0% | |
| CTTTAGCAGATTGGGTGGTA+AGG | + | chr3.4:91861810-91861829 | MS.gene42620:intron | 45.0% | |
| CTTTCAAGAGTTTGGGGAGA+AGG | + | chr3.4:91862708-91862727 | MS.gene42620:CDS | 45.0% | |
| GAACCTGGAGATGCCATTAA+AGG | - | chr3.4:91860387-91860406 | None:intergenic | 45.0% | |
| GAAGAAAAGAGAAGTGGTGG+TGG | + | chr3.4:91860005-91860024 | MS.gene42620:CDS | 45.0% | |
| GATGAACACCTTGTGGAAGA+AGG | - | chr3.4:91862801-91862820 | None:intergenic | 45.0% | |
| GCATAAGAGACTAGCGACTA+AGG | + | chr3.4:91860467-91860486 | MS.gene42620:CDS | 45.0% | |
| GCCAGTAGGGGAAATACAAA+AGG | - | chr3.4:91861758-91861777 | None:intergenic | 45.0% | |
| GGAGAAGAAAAGAGAAGTGG+TGG | + | chr3.4:91860002-91860021 | MS.gene42620:CDS | 45.0% | |
| GGGAGTTCAACTGTTAAAGG+TGG | + | chr3.4:91861059-91861078 | MS.gene42620:CDS | 45.0% | |
| GTTCATGTTTGTGTGTGTCG+TGG | + | chr3.4:91860503-91860522 | MS.gene42620:CDS | 45.0% | |
| TAAAGGTGGCACAGAGAAAG+AGG | + | chr3.4:91861073-91861092 | MS.gene42620:CDS | 45.0% | |
| TAACAGCTGAGGAACTGAGA+AGG | + | chr3.4:91860544-91860563 | MS.gene42620:CDS | 45.0% | |
| TAATTAGCCCTGTATCTGCC+TGG | - | chr3.4:91861781-91861800 | None:intergenic | 45.0% | |
| TAGTGGTGAGCATAGTAGTG+TGG | + | chr3.4:91862011-91862030 | MS.gene42620:CDS | 45.0% | |
| TATGTTCTGCAGACTCTCTC+CGG | + | chr3.4:91860972-91860991 | MS.gene42620:CDS | 45.0% | |
| TCATCACAGCTAGTACTAGC+GGG | + | chr3.4:91862079-91862098 | MS.gene42620:CDS | 45.0% | |
| TTGCGGCTAATTTAGATCGC+TGG | - | chr3.4:91860803-91860822 | None:intergenic | 45.0% | |
| TTTGTAGCAGGAACTTGTGG+GGG | - | chr3.4:91860183-91860202 | None:intergenic | 45.0% | |
| ! | AGTCGCTAGTCTCTTATGCT+GGG | - | chr3.4:91860466-91860485 | None:intergenic | 45.0% |
| ! | AGTGCTCCAATTTTCTCTGC+TGG | - | chr3.4:91862445-91862464 | None:intergenic | 45.0% |
| ! | GAACTTGTGGGGGTGTATTT+GGG | - | chr3.4:91860173-91860192 | None:intergenic | 45.0% |
| ! | GCTAATTGGTTTAGTGGCGA+GGG | - | chr3.4:91862362-91862381 | None:intergenic | 45.0% |
| ! | GGAGAGTTTTTCTCGTGGTA+AGG | - | chr3.4:91860212-91860231 | None:intergenic | 45.0% |
| ! | GGTGGTGGCAATTTCAAATG+TGG | + | chr3.4:91860020-91860039 | MS.gene42620:CDS | 45.0% |
| ! | TAGTCGCTAGTCTCTTATGC+TGG | - | chr3.4:91860467-91860486 | None:intergenic | 45.0% |
| ! | TGCTAATTGGTTTAGTGGCG+AGG | - | chr3.4:91862363-91862382 | None:intergenic | 45.0% |
| ! | TTTGGAGTTTAGGGCTTTGG+AGG | + | chr3.4:91860574-91860593 | MS.gene42620:CDS | 45.0% |
| !! | AGCTGTTTTCGTGTCGCATA+AGG | - | chr3.4:91861954-91861973 | None:intergenic | 45.0% |
| !! | CAAAATAATAAAAATAAATT+TGG | - | chr3.4:91862225-91862244 | None:intergenic | 5.0% |
| ATGTTCTGCAGACTCTCTCC+GGG | + | chr3.4:91860973-91860992 | MS.gene42620:CDS | 50.0% | |
| CATCACAGCTAGTACTAGCG+GGG | + | chr3.4:91862080-91862099 | MS.gene42620:CDS | 50.0% | |
| CATCGATCGCCAACATCGAA+TGG | - | chr3.4:91862169-91862188 | None:intergenic | 50.0% | |
| CGGAGAGGAATCCACAATAC+TGG | + | chr3.4:91862602-91862621 | MS.gene42620:CDS | 50.0% | |
| CTCCACTAATGGAAGAGGCT+GGG | + | chr3.4:91860997-91861016 | MS.gene42620:CDS | 50.0% | |
| CTTGGGGTGAACCTTATCTC+AGG | - | chr3.4:91860150-91860169 | None:intergenic | 50.0% | |
| GAGGTGGTGTATGCTTGTGA+TGG | + | chr3.4:91860593-91860612 | MS.gene42620:CDS | 50.0% | |
| GCATCTCCAGGTTCTTCTTC+TGG | + | chr3.4:91860393-91860412 | MS.gene42620:CDS | 50.0% | |
| GGACACATTGCTTCAACCCA+TGG | - | chr3.4:91860719-91860738 | None:intergenic | 50.0% | |
| GGCGATCGATGTGTTGTAGA+TGG | + | chr3.4:91862178-91862197 | MS.gene42620:CDS | 50.0% | |
| GTACTAGCGGGGTTCATGTT+TGG | + | chr3.4:91862091-91862110 | MS.gene42620:CDS | 50.0% | |
| GTGTGTCGTGGGTATCTTGT+TGG | + | chr3.4:91860515-91860534 | MS.gene42620:CDS | 50.0% | |
| GTTGGCTAGCATAACAGCTG+AGG | + | chr3.4:91860533-91860552 | MS.gene42620:CDS | 50.0% | |
| TCCAGGTTCTTCTTCTGGTG+AGG | + | chr3.4:91860398-91860417 | MS.gene42620:CDS | 50.0% | |
| TCCTCACCAGAAGAAGAACC+TGG | - | chr3.4:91860402-91860421 | None:intergenic | 50.0% | |
| TGTGACAGGGGTCTTAGTAG+TGG | + | chr3.4:91861994-91862013 | MS.gene42620:CDS | 50.0% | |
| TTCCCAGCCTCTTCCATTAG+TGG | - | chr3.4:91861002-91861021 | None:intergenic | 50.0% | |
| ! | GGAACTTGTGGGGGTGTATT+TGG | - | chr3.4:91860174-91860193 | None:intergenic | 50.0% |
| ! | GGCGTGGACCATGAAGATTT+TGG | + | chr3.4:91861142-91861161 | MS.gene42620:CDS | 50.0% |
| ! | TGGGTTGAAGCAATGTGTCC+AGG | + | chr3.4:91860719-91860738 | MS.gene42620:CDS | 50.0% |
| !! | AGACGGACTGCTAGAGCAAA+TGG | + | chr3.4:91861474-91861493 | MS.gene42620:intron | 50.0% |
| AGCAAGAGAAAGTCTCGGCG+TGG | + | chr3.4:91861126-91861145 | MS.gene42620:CDS | 55.0% | |
| CCAGCCTCTTCCATTAGTGG+AGG | - | chr3.4:91860999-91861018 | None:intergenic | 55.0% | |
| CCTCCACTAATGGAAGAGGC+TGG | + | chr3.4:91860996-91861015 | MS.gene42620:CDS | 55.0% | |
| CTCTTCCATTAGTGGAGGCC+CGG | - | chr3.4:91860994-91861013 | None:intergenic | 55.0% | |
| TACTGGCCCAGGCAGATACA+GGG | + | chr3.4:91861771-91861790 | MS.gene42620:CDS | 55.0% | |
| TGTATCTGCCTGGGCCAGTA+GGG | - | chr3.4:91861771-91861790 | None:intergenic | 55.0% | |
| TGTATTTCCCCTACTGGCCC+AGG | + | chr3.4:91861760-91861779 | MS.gene42620:CDS | 55.0% | |
| TTAGTGGCGAGGGCAGAGTT+TGG | - | chr3.4:91862352-91862371 | None:intergenic | 55.0% | |
| ! | GTGGGGGTGTATTTGGGCTT+GGG | - | chr3.4:91860167-91860186 | None:intergenic | 55.0% |
| ! | TGGGGGTGTATTTGGGCTTG+GGG | - | chr3.4:91860166-91860185 | None:intergenic | 55.0% |
| ! | TGTGGGGGTGTATTTGGGCT+TGG | - | chr3.4:91860168-91860187 | None:intergenic | 55.0% |
| !! | GGAGTTTAGGGCTTTGGAGG+TGG | + | chr3.4:91860577-91860596 | MS.gene42620:CDS | 55.0% |
| CGGGCCTCCACTAATGGAAG+AGG | + | chr3.4:91860992-91861011 | MS.gene42620:CDS | 60.0% | |
| CTACTGGCCCAGGCAGATAC+AGG | + | chr3.4:91861770-91861789 | MS.gene42620:CDS | 60.0% | |
| CTGTATCTGCCTGGGCCAGT+AGG | - | chr3.4:91861772-91861791 | None:intergenic | 60.0% | |
| GTATCTGCCTGGGCCAGTAG+GGG | - | chr3.4:91861770-91861789 | None:intergenic | 60.0% | |
| TCTCTCCGGGCCTCCACTAA+TGG | + | chr3.4:91860986-91861005 | MS.gene42620:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 91859958 | 91862858 | 91859958 | ID=MS.gene42620 |
| chr3.4 | mRNA | 91859958 | 91862858 | 91859958 | ID=MS.gene42620.t1;Parent=MS.gene42620 |
| chr3.4 | exon | 91859958 | 91861330 | 91859958 | ID=MS.gene42620.t1.exon1;Parent=MS.gene42620.t1 |
| chr3.4 | CDS | 91859958 | 91861330 | 91859958 | ID=cds.MS.gene42620.t1;Parent=MS.gene42620.t1 |
| chr3.4 | exon | 91861706 | 91861826 | 91861706 | ID=MS.gene42620.t1.exon2;Parent=MS.gene42620.t1 |
| chr3.4 | CDS | 91861706 | 91861826 | 91861706 | ID=cds.MS.gene42620.t1;Parent=MS.gene42620.t1 |
| chr3.4 | exon | 91861914 | 91862207 | 91861914 | ID=MS.gene42620.t1.exon3;Parent=MS.gene42620.t1 |
| chr3.4 | CDS | 91861914 | 91862207 | 91861914 | ID=cds.MS.gene42620.t1;Parent=MS.gene42620.t1 |
| chr3.4 | exon | 91862280 | 91862482 | 91862280 | ID=MS.gene42620.t1.exon4;Parent=MS.gene42620.t1 |
| chr3.4 | CDS | 91862280 | 91862482 | 91862280 | ID=cds.MS.gene42620.t1;Parent=MS.gene42620.t1 |
| chr3.4 | exon | 91862597 | 91862858 | 91862597 | ID=MS.gene42620.t1.exon5;Parent=MS.gene42620.t1 |
| chr3.4 | CDS | 91862597 | 91862858 | 91862597 | ID=cds.MS.gene42620.t1;Parent=MS.gene42620.t1 |
| Gene Sequence |
| Protein sequence |
