Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42686.t1 | XP_003603197.1 | 96.4 | 759 | 25 | 1 | 1 | 757 | 14 | 772 | 0.00E+00 | 1407.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42686.t1 | Q9LYG9 | 55.7 | 720 | 292 | 10 | 32 | 746 | 33 | 730 | 1.3e-206 | 721.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42686.t1 | G7J8E1 | 96.4 | 759 | 25 | 1 | 1 | 757 | 14 | 772 | 0.0e+00 | 1407.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42686 | MS.gene014978 | PPI |
| MS.gene42686 | MS.gene42688 | PPI |
| MS.gene32770 | MS.gene42686 | PPI |
| MS.gene42620 | MS.gene42686 | PPI |
| MS.gene32773 | MS.gene42686 | PPI |
| MS.gene42686 | MS.gene74110 | PPI |
| MS.gene42681 | MS.gene42686 | PPI |
| MS.gene42686 | MS.gene014973 | PPI |
| MS.gene42686 | MS.gene97525 | PPI |
| MS.gene42686 | MS.gene42620 | PPI |
| MS.gene42686 | MS.gene062410 | PPI |
| MS.gene42686 | MS.gene014981 | PPI |
| MS.gene42686 | MS.gene42628 | PPI |
| MS.gene32764 | MS.gene42686 | PPI |
| MS.gene062410 | MS.gene42686 | PPI |
| MS.gene42622 | MS.gene42686 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42686.t1 | MTR_3g104940 | 96.970 | 759 | 21 | 1 | 1 | 757 | 14 | 772 | 0.0 | 1518 |
| MS.gene42686.t1 | MTR_3g104990 | 87.237 | 760 | 89 | 2 | 1 | 757 | 17 | 771 | 0.0 | 1333 |
| MS.gene42686.t1 | MTR_3g104920 | 79.501 | 761 | 128 | 4 | 1 | 757 | 1 | 737 | 0.0 | 1211 |
| MS.gene42686.t1 | MTR_3g104920 | 79.501 | 761 | 128 | 4 | 1 | 757 | 13 | 749 | 0.0 | 1211 |
| MS.gene42686.t1 | MTR_2g041220 | 49.804 | 765 | 327 | 15 | 5 | 746 | 15 | 745 | 0.0 | 692 |
| MS.gene42686.t1 | MTR_8g071250 | 46.114 | 579 | 283 | 11 | 184 | 749 | 129 | 691 | 1.48e-166 | 497 |
| MS.gene42686.t1 | MTR_1g113850 | 39.940 | 671 | 339 | 11 | 129 | 749 | 254 | 910 | 9.55e-156 | 476 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42686.t1 | AT5G12080 | 57.778 | 720 | 277 | 10 | 32 | 746 | 33 | 730 | 0.0 | 825 |
| MS.gene42686.t1 | AT5G12080 | 57.778 | 720 | 277 | 10 | 32 | 746 | 33 | 730 | 0.0 | 825 |
| MS.gene42686.t1 | AT5G12080 | 57.778 | 720 | 277 | 10 | 32 | 746 | 33 | 730 | 0.0 | 825 |
| MS.gene42686.t1 | AT5G19520 | 53.890 | 707 | 307 | 8 | 41 | 746 | 50 | 738 | 0.0 | 758 |
| MS.gene42686.t1 | AT5G19520 | 53.890 | 707 | 307 | 8 | 41 | 746 | 50 | 738 | 0.0 | 758 |
| MS.gene42686.t1 | AT2G17010 | 40.984 | 610 | 312 | 8 | 177 | 749 | 292 | 890 | 7.22e-155 | 474 |
| MS.gene42686.t1 | AT3G14810 | 40.368 | 706 | 343 | 12 | 98 | 754 | 188 | 864 | 4.30e-154 | 471 |
| MS.gene42686.t1 | AT1G53470 | 40.120 | 668 | 347 | 12 | 129 | 749 | 199 | 860 | 1.55e-153 | 469 |
| MS.gene42686.t1 | AT1G78610 | 41.311 | 656 | 331 | 9 | 132 | 749 | 193 | 832 | 3.03e-152 | 465 |
| MS.gene42686.t1 | AT2G17000 | 40.826 | 605 | 320 | 10 | 177 | 749 | 225 | 823 | 7.15e-142 | 438 |
| MS.gene42686.t1 | AT2G17000 | 40.826 | 605 | 320 | 10 | 177 | 749 | 225 | 823 | 8.88e-142 | 438 |
| MS.gene42686.t1 | AT3G14810 | 37.819 | 706 | 326 | 13 | 98 | 754 | 188 | 829 | 2.21e-134 | 418 |
| MS.gene42686.t1 | AT2G17010 | 35.246 | 366 | 189 | 8 | 177 | 505 | 292 | 646 | 3.69e-61 | 218 |
Find 152 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTACCTTGTCAACCATATT+TGG | 0.086878 | 3.3:-86325316 | None:intergenic |
| CAATATTGGCATCCTAATTT+TGG | 0.137793 | 3.3:+86325522 | MS.gene42686:CDS |
| GGACAGAGCTTTGGAGTTTA+AGG | 0.149958 | 3.3:+86323543 | MS.gene42686:CDS |
| GCATTTGCAGCAGGAGATTT+TGG | 0.152219 | 3.3:-86323092 | None:intergenic |
| CCAATCTGCTAAAGACTTTC+TGG | 0.165787 | 3.3:-86324717 | None:intergenic |
| TATCTGTTAGTTCACCTTAT+AGG | 0.222459 | 3.3:+86323249 | MS.gene42686:CDS |
| ACGACACCAGCAGAGAAAAT+TGG | 0.226737 | 3.3:+86325355 | MS.gene42686:CDS |
| AAGTAACATTCTCTTCAAAA+AGG | 0.237514 | 3.3:-86323205 | None:intergenic |
| CTCATGGACTATGAAGATTT+TGG | 0.238303 | 3.3:+86324120 | MS.gene42686:CDS |
| TCTCTCTGGGCCTCCACTTA+TGG | 0.256047 | 3.3:+86323964 | MS.gene42686:CDS |
| ACTCCGTCGTTTCATGATTA+AGG | 0.256189 | 3.3:+86324640 | MS.gene42686:CDS |
| ACAATGAACTTTCAAGAGTT+TGG | 0.262365 | 3.3:+86325606 | MS.gene42686:CDS |
| CTAGGGATGAACCTTATTTC+AGG | 0.265146 | 3.3:-86323056 | None:intergenic |
| TTGTTAAATGCGTTCCTATA+AGG | 0.266324 | 3.3:-86323263 | None:intergenic |
| CAAAATCTTTGCGGCCAGTT+TGG | 0.274734 | 3.3:-86323786 | None:intergenic |
| TCAGGGGAAGCACAGTTTAA+AGG | 0.276027 | 3.3:-86323038 | None:intergenic |
| TCCTTTGGTATTTCCCCTAT+TGG | 0.277648 | 3.3:+86324670 | MS.gene42686:CDS |
| TTGTTCACCAAATCTTGATT+TGG | 0.289978 | 3.3:-86323162 | None:intergenic |
| TCTCTTTCGCTTGCCTCTAC+TGG | 0.292785 | 3.3:-86323432 | None:intergenic |
| GTACTCGCGGCTTTCATGTT+TGG | 0.292967 | 3.3:+86325008 | MS.gene42686:CDS |
| GACGACGTTGCTAAAGGTTT+TGG | 0.297117 | 3.3:+86323868 | MS.gene42686:CDS |
| TTCAGGAGTACTACCGTTAA+TGG | 0.300594 | 3.3:+86324034 | MS.gene42686:CDS |
| TACTCGCGGCTTTCATGTTT+GGG | 0.302794 | 3.3:+86325009 | MS.gene42686:CDS |
| AGCTTTGGAGTTTAAGGCTT+TGG | 0.308174 | 3.3:+86323549 | MS.gene42686:CDS |
| ATGGCATCTCCAGGTCCTGC+TGG | 0.309195 | 3.3:+86323371 | MS.gene42686:CDS |
| TAGTACTCCTGAAACTAAAA+TGG | 0.314981 | 3.3:-86324024 | None:intergenic |
| TCTCCACTCACATTTGAAAT+AGG | 0.334324 | 3.3:-86322945 | None:intergenic |
| ACTGTGCTTCCCCTGAAATA+AGG | 0.336839 | 3.3:+86323045 | MS.gene42686:CDS |
| TGGAGAGGAATCCACAATAT+TGG | 0.337472 | 3.3:+86325508 | MS.gene42686:CDS |
| CGACACCAGCAGAGAAAATT+GGG | 0.337647 | 3.3:+86325356 | MS.gene42686:CDS |
| CACTCCTAGAACACCTTTGA+TGG | 0.340051 | 3.3:+86323352 | MS.gene42686:CDS |
| CTACCTTGTCAACCATATTT+GGG | 0.340360 | 3.3:-86325315 | None:intergenic |
| TTCACTACCAAGCCAAAATT+AGG | 0.347299 | 3.3:-86325534 | None:intergenic |
| ACTCTTGTTTCCCTTCTCAT+TGG | 0.349071 | 3.3:+86323824 | MS.gene42686:CDS |
| CTTCTGTAATAATTGCTGAT+AGG | 0.353608 | 3.3:-86325292 | None:intergenic |
| TTATTACAGAAGCCCAAATA+TGG | 0.356757 | 3.3:+86325303 | MS.gene42686:CDS |
| TGTTCACCAAATCTTGATTT+GGG | 0.359204 | 3.3:-86323161 | None:intergenic |
| ACCGTTCCAGACTTGTTATT+CGG | 0.360429 | 3.3:-86323299 | None:intergenic |
| AAAGAAAGACATTATTGATA+TGG | 0.362900 | 3.3:+86324063 | MS.gene42686:CDS |
| TGTCTCTGACTGTGCCAATA+GGG | 0.364319 | 3.3:-86324684 | None:intergenic |
| AACATTCCTGAAAATGTAAT+AGG | 0.365241 | 3.3:-86324266 | None:intergenic |
| TCTAAGCCCAAATCAAGATT+TGG | 0.370555 | 3.3:+86323155 | MS.gene42686:CDS |
| ATCTTGATGAAATCATTTAC+AGG | 0.371328 | 3.3:+86323399 | MS.gene42686:CDS |
| TTTCTTTGTGCCGCCATTAA+CGG | 0.374402 | 3.3:-86324047 | None:intergenic |
| CAGAAAGTCTTTAGCAGATT+GGG | 0.374694 | 3.3:+86324718 | MS.gene42686:CDS |
| CCAGAAAGTCTTTAGCAGAT+TGG | 0.385016 | 3.3:+86324717 | MS.gene42686:CDS |
| AGTAGTGTGGCTTCTTCTAA+TGG | 0.385108 | 3.3:+86324941 | MS.gene42686:CDS |
| GATGCCATCAAAGGTGTTCT+AGG | 0.387245 | 3.3:-86323356 | None:intergenic |
| TCAACTCATGATCATGATCT+TGG | 0.387525 | 3.3:-86322974 | None:intergenic |
| TATGTTCTACAGACTCTCTC+TGG | 0.390416 | 3.3:+86323950 | MS.gene42686:CDS |
| CTGTCTCTGACTGTGCCAAT+AGG | 0.392993 | 3.3:-86324685 | None:intergenic |
| AACTGAGAAGGACAGAGCTT+TGG | 0.400147 | 3.3:+86323534 | MS.gene42686:CDS |
| CACCAGTTCACTTCTCCGCT+TGG | 0.404807 | 3.3:-86325637 | None:intergenic |
| CTACTATGGTCACCACTACT+AGG | 0.414873 | 3.3:-86324923 | None:intergenic |
| TTAGTGGCGAGGACAGAGTT+TGG | 0.415287 | 3.3:-86325268 | None:intergenic |
| TGCGGCCAGTTTGGATCGAT+GGG | 0.415753 | 3.3:-86323777 | None:intergenic |
| ATCTCCAGGTCCTGCTGGGG+AGG | 0.420002 | 3.3:+86323376 | MS.gene42686:CDS |
| GATTAAGGAAGAAGTTCCTT+TGG | 0.428446 | 3.3:+86324655 | MS.gene42686:CDS |
| TTGCGGCCAGTTTGGATCGA+TGG | 0.433487 | 3.3:-86323778 | None:intergenic |
| CACCGATCGCCAACATCAAA+CGG | 0.435576 | 3.3:-86325083 | None:intergenic |
| GTGCATTGCGGGTAGCTTGT+TGG | 0.437117 | 3.3:+86323493 | MS.gene42686:CDS |
| TGGCATCTCCAGGTCCTGCT+GGG | 0.444037 | 3.3:+86323372 | MS.gene42686:CDS |
| AGGGTTTCATCAATAGGATA+AGG | 0.446597 | 3.3:-86323185 | None:intergenic |
| TCAGTTTGGTTCTCCTCACA+TGG | 0.448034 | 3.3:+86323732 | MS.gene42686:CDS |
| AAACTAAAATGGCCAATACT+TGG | 0.448771 | 3.3:-86324013 | None:intergenic |
| GGTTGACAAGGTAGAGTTCT+CGG | 0.449379 | 3.3:+86325324 | MS.gene42686:CDS |
| TATATCATTCAAAATCTTTG+CGG | 0.449874 | 3.3:-86323795 | None:intergenic |
| ATAATTGCTGATAGGTTTAG+TGG | 0.451449 | 3.3:-86325284 | None:intergenic |
| AAGAATGTGTATGAACCATT+TGG | 0.454547 | 3.3:-86323618 | None:intergenic |
| CATTTGAGATAACTTGCATC+AGG | 0.455640 | 3.3:-86325741 | None:intergenic |
| AAATGTAAATAATATTAAGA+TGG | 0.457937 | 3.3:+86325566 | MS.gene42686:CDS |
| TTTGGAGTTTAAGGCTTTGG+AGG | 0.458091 | 3.3:+86323552 | MS.gene42686:CDS |
| GGCGATCGGTGTGTTATAGA+TGG | 0.461972 | 3.3:+86325095 | MS.gene42686:CDS |
| TAGAAGAAGCCACACTACTA+TGG | 0.462238 | 3.3:-86324937 | None:intergenic |
| CAATTGAACAAGCTTGTGAC+AGG | 0.463263 | 3.3:+86324897 | MS.gene42686:CDS |
| GAGTCTGTAGAACATATTGA+TGG | 0.464278 | 3.3:-86323943 | None:intergenic |
| ATCTAGTGAATTAGAGATTG+TGG | 0.475217 | 3.3:-86324170 | None:intergenic |
| TTCTCAGCCTCTTCCATAAG+TGG | 0.477268 | 3.3:-86323977 | None:intergenic |
| CTATTGGCACAGTCAGAGAC+AGG | 0.477390 | 3.3:+86324686 | MS.gene42686:CDS |
| TGGGGCCCATCGATCCAAAC+TGG | 0.477880 | 3.3:+86323772 | MS.gene42686:CDS |
| ATTTATTCTTACTGGCAGCT+AGG | 0.481984 | 3.3:-86324298 | None:intergenic |
| TTTATTCTTACTGGCAGCTA+GGG | 0.484397 | 3.3:-86324297 | None:intergenic |
| AATGTAAATAATATTAAGAT+GGG | 0.490222 | 3.3:+86325567 | MS.gene42686:CDS |
| AGATCCTCCCCAGCAGGACC+TGG | 0.491696 | 3.3:-86323380 | None:intergenic |
| GTGGCATGTTAGTTACCAAA+TGG | 0.493145 | 3.3:+86323603 | MS.gene42686:CDS |
| CATTCGCCGAATAACAAGTC+TGG | 0.493585 | 3.3:+86323293 | MS.gene42686:CDS |
| GACCAAGCGGAGAAGTGAAC+TGG | 0.498225 | 3.3:+86325635 | MS.gene42686:CDS |
| GCGGAGAAGTGAACTGGTGA+TGG | 0.503744 | 3.3:+86325641 | MS.gene42686:CDS |
| CATTACAAACACGAAAATGA+TGG | 0.506172 | 3.3:-86325057 | None:intergenic |
| TATAAAGACGACGTTGCTAA+AGG | 0.506408 | 3.3:+86323862 | MS.gene42686:CDS |
| TGGGCCTCCACTTATGGAAG+AGG | 0.508208 | 3.3:+86323970 | MS.gene42686:CDS |
| ACAAGTCTGGAACGGTGAAT+CGG | 0.520222 | 3.3:+86323306 | MS.gene42686:CDS |
| TGGGTTGAAGCAATGTGTCC+AGG | 0.522262 | 3.3:+86323697 | MS.gene42686:CDS |
| ATCGGTGGAACTCCAAGTAT+TGG | 0.525832 | 3.3:+86324001 | MS.gene42686:CDS |
| TAGGGATGAACCTTATTTCA+GGG | 0.528282 | 3.3:-86323055 | None:intergenic |
| GGCATCTCCAGGTCCTGCTG+GGG | 0.531190 | 3.3:+86323373 | MS.gene42686:CDS |
| TCATCAAGATCCTCCCCAGC+AGG | 0.531246 | 3.3:-86323386 | None:intergenic |
| AAATTAGGATGCCAATATTG+TGG | 0.532913 | 3.3:-86325519 | None:intergenic |
| ACACCTTTGATGGCATCTCC+AGG | 0.537728 | 3.3:+86323362 | MS.gene42686:CDS |
| TAAAGAAATTACTAATGAGA+TGG | 0.537985 | 3.3:+86324228 | MS.gene42686:CDS |
| GATGAACACCTTGTGGAAGA+AGG | 0.541949 | 3.3:-86325704 | None:intergenic |
| AGCAAGAGAAAGTTTCCTCA+TGG | 0.550174 | 3.3:+86324104 | MS.gene42686:CDS |
| AACTGATCCAAATGAAAACC+TGG | 0.550631 | 3.3:-86323715 | None:intergenic |
| TGCTGATAGGTTTAGTGGCG+AGG | 0.552591 | 3.3:-86325279 | None:intergenic |
| GGACACATTGCTTCAACCCA+TGG | 0.552760 | 3.3:-86323694 | None:intergenic |
| GTCTCTGACTGTGCCAATAG+GGG | 0.557300 | 3.3:-86324683 | None:intergenic |
| CATGATCATGATCTTGGCCA+TGG | 0.567528 | 3.3:-86322968 | None:intergenic |
| AGAAATTACTAATGAGATGG+AGG | 0.569409 | 3.3:+86324231 | MS.gene42686:CDS |
| TAGATGCAGTGATGAATTCA+AGG | 0.569731 | 3.3:+86324143 | MS.gene42686:CDS |
| GTAATGCATCCGTTTGATGT+TGG | 0.570146 | 3.3:+86325074 | MS.gene42686:CDS |
| GAGGTATTGTATGCTTGTGA+TGG | 0.573031 | 3.3:+86323571 | MS.gene42686:CDS |
| GTTCCTATTTCAAATGTGAG+TGG | 0.582514 | 3.3:+86322942 | MS.gene42686:CDS |
| ATGGAAGAGGCTGAGAAGAT+CGG | 0.582758 | 3.3:+86323983 | MS.gene42686:CDS |
| ATGTTCTACAGACTCTCTCT+GGG | 0.597339 | 3.3:+86323951 | MS.gene42686:CDS |
| CGAGTACTAGCTGCGATGAG+AGG | 0.597969 | 3.3:-86324992 | None:intergenic |
| CAGTTTGGTTCTCCTCACAT+GGG | 0.599014 | 3.3:+86323733 | MS.gene42686:CDS |
| GGACCTGGAGATGCCATCAA+AGG | 0.599028 | 3.3:-86323365 | None:intergenic |
| TGTGACAGGGGTCCTAGTAG+TGG | 0.600912 | 3.3:+86324911 | MS.gene42686:CDS |
| GATCAAAGAAAGATTTGACA+TGG | 0.605754 | 3.3:-86323901 | None:intergenic |
| GATGGAGAACAGAAGAGAAG+TGG | 0.605995 | 3.3:+86322917 | MS.gene42686:CDS |
| TTATCAAGAACGTAAAGCAC+TGG | 0.607748 | 3.3:+86324839 | MS.gene42686:CDS |
| ATCCGTTTGATGTTGGCGAT+CGG | 0.612203 | 3.3:+86325081 | MS.gene42686:CDS |
| TCAAAACTAGGTATTTGGAG+AGG | 0.616066 | 3.3:+86325493 | MS.gene42686:intron |
| TCAGCCTCTTCCATAAGTGG+AGG | 0.616144 | 3.3:-86323974 | None:intergenic |
| TGATTAAAAGCACCCATGTG+AGG | 0.618150 | 3.3:-86323745 | None:intergenic |
| CAAAATCTTCATAGTCCATG+AGG | 0.622948 | 3.3:-86324119 | None:intergenic |
| AATTGAACAAGCTTGTGACA+GGG | 0.626996 | 3.3:+86324898 | MS.gene42686:CDS |
| GGGGAAGCACAGTTTAAAGG+TGG | 0.629078 | 3.3:-86323035 | None:intergenic |
| TAACGATTGAGAAACTGAGA+AGG | 0.630563 | 3.3:+86323522 | MS.gene42686:CDS |
| AGGGATGAACCTTATTTCAG+GGG | 0.633053 | 3.3:-86323054 | None:intergenic |
| AAAGTCTTTAGCAGATTGGG+TGG | 0.633331 | 3.3:+86324721 | MS.gene42686:CDS |
| AGGAAAGTTGAATCCAGTAG+AGG | 0.633754 | 3.3:+86323419 | MS.gene42686:CDS |
| GCCAATAGGGGAAATACCAA+AGG | 0.640515 | 3.3:-86324671 | None:intergenic |
| GAAGAGGCTGAGAAGATCGG+TGG | 0.642995 | 3.3:+86323986 | MS.gene42686:CDS |
| AAGCCCAAATATGGTTGACA+AGG | 0.643250 | 3.3:+86325312 | MS.gene42686:CDS |
| CTTCCTTAATCATGAAACGA+CGG | 0.644475 | 3.3:-86324643 | None:intergenic |
| TCAAATGTGAGTGGAGACCA+TGG | 0.645578 | 3.3:+86322951 | MS.gene42686:CDS |
| ATTGAACAAGCTTGTGACAG+GGG | 0.650888 | 3.3:+86324899 | MS.gene42686:CDS |
| AGGTGTTCATCTCAGACACA+TGG | 0.662617 | 3.3:+86325716 | MS.gene42686:CDS |
| CTCATCGCAGCTAGTACTCG+CGG | 0.664316 | 3.3:+86324995 | MS.gene42686:CDS |
| TTATTCTTACTGGCAGCTAG+GGG | 0.664425 | 3.3:-86324296 | None:intergenic |
| TGTCTGAGATGAACACCTTG+TGG | 0.664837 | 3.3:-86325711 | None:intergenic |
| GCCGAATAACAAGTCTGGAA+CGG | 0.665450 | 3.3:+86323298 | MS.gene42686:CDS |
| GTGTGTTATAGATGGTGTTG+AGG | 0.674889 | 3.3:+86325103 | MS.gene42686:CDS |
| AGGAGTACTACCGTTAATGG+CGG | 0.675857 | 3.3:+86324037 | MS.gene42686:CDS |
| TAGTGGTGACCATAGTAGTG+TGG | 0.677764 | 3.3:+86324928 | MS.gene42686:CDS |
| AGTTTGGAGAGAAGACCAAG+CGG | 0.683246 | 3.3:+86325622 | MS.gene42686:CDS |
| GGCGACTTTGTAGAGTAGCG+AGG | 0.692352 | 3.3:-86323014 | None:intergenic |
| GCGAAAGAGACTAACAACAA+AGG | 0.698200 | 3.3:+86323445 | MS.gene42686:CDS |
| AGATACAGCCTTCTTCCACA+AGG | 0.708237 | 3.3:+86325696 | MS.gene42686:CDS |
| TATTGGCACAGTCAGAGACA+GGG | 0.708405 | 3.3:+86324687 | MS.gene42686:CDS |
| GACACCAGCAGAGAAAATTG+GGG | 0.731623 | 3.3:+86325357 | MS.gene42686:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTAAATAATATTAAGA+TGG | + | chr3.3:86325566-86325585 | MS.gene42686:CDS | 10.0% |
| !! | AATGTAAATAATATTAAGAT+GGG | + | chr3.3:86325567-86325586 | MS.gene42686:CDS | 10.0% |
| !! | AAAATAACTTATAGCTTAAA+TGG | + | chr3.3:86324434-86324453 | MS.gene42686:intron | 15.0% |
| !! | TCAAACAACAAAATTAAATT+TGG | - | chr3.3:86325144-86325163 | None:intergenic | 15.0% |
| !!! | TTTATCTTCTTTTATAGATT+TGG | + | chr3.3:86324474-86324493 | MS.gene42686:intron | 15.0% |
| !! | AAAGAAAGACATTATTGATA+TGG | + | chr3.3:86324063-86324082 | MS.gene42686:CDS | 20.0% |
| !! | AAAGTTCTCTCATTATTAAT+AGG | + | chr3.3:86324600-86324619 | MS.gene42686:intron | 20.0% |
| !! | AAGTTCTCTCATTATTAATA+GGG | + | chr3.3:86324601-86324620 | MS.gene42686:intron | 20.0% |
| !! | AATAATGCATTTATTCTTAC+TGG | - | chr3.3:86324309-86324328 | None:intergenic | 20.0% |
| !! | ACTGAAAAATACAAACATTA+TGG | - | chr3.3:86324812-86324831 | None:intergenic | 20.0% |
| !! | TAAAGAAATTACTAATGAGA+TGG | + | chr3.3:86324228-86324247 | MS.gene42686:CDS | 20.0% |
| !! | TATATCATTCAAAATCTTTG+CGG | - | chr3.3:86323798-86323817 | None:intergenic | 20.0% |
| !!! | AGATTTTGAATGATATAACA+TGG | + | chr3.3:86323801-86323820 | MS.gene42686:CDS | 20.0% |
| !!! | ATTAATGCCTTTTAATTATC+TGG | + | chr3.3:86325173-86325192 | MS.gene42686:intron | 20.0% |
| !!! | GCTATAAGTTATTTTCTATA+AGG | - | chr3.3:86324429-86324448 | None:intergenic | 20.0% |
| !!! | TCTTTTAAAAGATTTTCTTG+TGG | - | chr3.3:86323126-86323145 | None:intergenic | 20.0% |
| ! | AACATTCCTGAAAATGTAAT+AGG | - | chr3.3:86324269-86324288 | None:intergenic | 25.0% |
| ! | AAGTAACATTCTCTTCAAAA+AGG | - | chr3.3:86323208-86323227 | None:intergenic | 25.0% |
| ! | AGTAACATTCTCTTCAAAAA+GGG | - | chr3.3:86323207-86323226 | None:intergenic | 25.0% |
| ! | ATCTTGATGAAATCATTTAC+AGG | + | chr3.3:86323399-86323418 | MS.gene42686:CDS | 25.0% |
| !! | CTGAAATTTTATCCTCAATA+TGG | + | chr3.3:86325410-86325429 | MS.gene42686:intron | 25.0% |
| !! | GAACTTTTTGTTGAAGAAAA+AGG | + | chr3.3:86323658-86323677 | MS.gene42686:CDS | 25.0% |
| !! | TGTTTAGATTGACTTAATTG+AGG | + | chr3.3:86324363-86324382 | MS.gene42686:intron | 25.0% |
| !!! | CTAATGTCTTTTTCAAAACT+AGG | + | chr3.3:86325481-86325500 | MS.gene42686:intron | 25.0% |
| !!! | CTTTTTCAAAACTAGGTATT+TGG | + | chr3.3:86325488-86325507 | MS.gene42686:intron | 25.0% |
| !!! | TGTTTGTATTTTTCAGTTGA+AGG | + | chr3.3:86324815-86324834 | MS.gene42686:intron | 25.0% |
| AAACTAAAATGGCCAATACT+TGG | - | chr3.3:86324016-86324035 | None:intergenic | 30.0% | |
| AAATTAGGATGCCAATATTG+TGG | - | chr3.3:86325522-86325541 | None:intergenic | 30.0% | |
| AAGAATGTGTATGAACCATT+TGG | - | chr3.3:86323621-86323640 | None:intergenic | 30.0% | |
| AATCATTTGTGAGACTGTTT+GGG | + | chr3.3:86324400-86324419 | MS.gene42686:intron | 30.0% | |
| ACAATGAACTTTCAAGAGTT+TGG | + | chr3.3:86325606-86325625 | MS.gene42686:CDS | 30.0% | |
| AGAAATTACTAATGAGATGG+AGG | + | chr3.3:86324231-86324250 | MS.gene42686:CDS | 30.0% | |
| ATAATTGCTGATAGGTTTAG+TGG | - | chr3.3:86325287-86325306 | None:intergenic | 30.0% | |
| ATAGCTGCCAGATAATTAAA+AGG | - | chr3.3:86325183-86325202 | None:intergenic | 30.0% | |
| ATCTAGTGAATTAGAGATTG+TGG | - | chr3.3:86324173-86324192 | None:intergenic | 30.0% | |
| ATTTGTCAACATCATAACGA+AGG | + | chr3.3:86324768-86324787 | MS.gene42686:intron | 30.0% | |
| CACTGAAAGAAAAAGTAAAG+AGG | + | chr3.3:86325380-86325399 | MS.gene42686:CDS | 30.0% | |
| CATTACAAACACGAAAATGA+TGG | - | chr3.3:86325060-86325079 | None:intergenic | 30.0% | |
| CGAAGGATTGAAATTATCTT+TGG | + | chr3.3:86324785-86324804 | MS.gene42686:intron | 30.0% | |
| CTTCTGTAATAATTGCTGAT+AGG | - | chr3.3:86325295-86325314 | None:intergenic | 30.0% | |
| GATCAAAGAAAGATTTGACA+TGG | - | chr3.3:86323904-86323923 | None:intergenic | 30.0% | |
| TAATCATTTGTGAGACTGTT+TGG | + | chr3.3:86324399-86324418 | MS.gene42686:intron | 30.0% | |
| TAGTACTCCTGAAACTAAAA+TGG | - | chr3.3:86324027-86324046 | None:intergenic | 30.0% | |
| TATCTGTTAGTTCACCTTAT+AGG | + | chr3.3:86323249-86323268 | MS.gene42686:CDS | 30.0% | |
| TCAAAAAGGGTTTCATCAAT+AGG | - | chr3.3:86323194-86323213 | None:intergenic | 30.0% | |
| TGTTCACCAAATCTTGATTT+GGG | - | chr3.3:86323164-86323183 | None:intergenic | 30.0% | |
| TTATTACAGAAGCCCAAATA+TGG | + | chr3.3:86325303-86325322 | MS.gene42686:CDS | 30.0% | |
| TTGTTAAATGCGTTCCTATA+AGG | - | chr3.3:86323266-86323285 | None:intergenic | 30.0% | |
| TTGTTCACCAAATCTTGATT+TGG | - | chr3.3:86323165-86323184 | None:intergenic | 30.0% | |
| TTTAATTATCTGGCAGCTAT+TGG | + | chr3.3:86325183-86325202 | MS.gene42686:intron | 30.0% | |
| ! | ATAAGACTTGTTCCATATTG+AGG | - | chr3.3:86325425-86325444 | None:intergenic | 30.0% |
| ! | CAATATTGGCATCCTAATTT+TGG | + | chr3.3:86325522-86325541 | MS.gene42686:CDS | 30.0% |
| ! | TTAAGTTGTTTATCCAACCA+TGG | + | chr3.3:86324520-86324539 | MS.gene42686:intron | 30.0% |
| AACTGATCCAAATGAAAACC+TGG | - | chr3.3:86323718-86323737 | None:intergenic | 35.0% | |
| AATTGAACAAGCTTGTGACA+GGG | + | chr3.3:86324898-86324917 | MS.gene42686:CDS | 35.0% | |
| ACAAAAATGCTCCAATGAGA+AGG | - | chr3.3:86323838-86323857 | None:intergenic | 35.0% | |
| AGATACCAAAACAAGGAGAA+GGG | - | chr3.3:86324560-86324579 | None:intergenic | 35.0% | |
| AGGGTTTCATCAATAGGATA+AGG | - | chr3.3:86323188-86323207 | None:intergenic | 35.0% | |
| ATTTATTCTTACTGGCAGCT+AGG | - | chr3.3:86324301-86324320 | None:intergenic | 35.0% | |
| CAAAAATGCTCCAATGAGAA+GGG | - | chr3.3:86323837-86323856 | None:intergenic | 35.0% | |
| CAAAATCTTCATAGTCCATG+AGG | - | chr3.3:86324122-86324141 | None:intergenic | 35.0% | |
| CAGAAAGTCTTTAGCAGATT+GGG | + | chr3.3:86324718-86324737 | MS.gene42686:CDS | 35.0% | |
| CTACCTTGTCAACCATATTT+GGG | - | chr3.3:86325318-86325337 | None:intergenic | 35.0% | |
| CTTCCTTAATCATGAAACGA+CGG | - | chr3.3:86324646-86324665 | None:intergenic | 35.0% | |
| GAGTCTGTAGAACATATTGA+TGG | - | chr3.3:86323946-86323965 | None:intergenic | 35.0% | |
| GATTAAGGAAGAAGTTCCTT+TGG | + | chr3.3:86324655-86324674 | MS.gene42686:CDS | 35.0% | |
| GTTCCTATTTCAAATGTGAG+TGG | + | chr3.3:86322942-86322961 | MS.gene42686:CDS | 35.0% | |
| TAACGATTGAGAAACTGAGA+AGG | + | chr3.3:86323522-86323541 | MS.gene42686:CDS | 35.0% | |
| TAGATGCAGTGATGAATTCA+AGG | + | chr3.3:86324143-86324162 | MS.gene42686:CDS | 35.0% | |
| TATAAAGACGACGTTGCTAA+AGG | + | chr3.3:86323862-86323881 | MS.gene42686:CDS | 35.0% | |
| TCAAAACTAGGTATTTGGAG+AGG | + | chr3.3:86325493-86325512 | MS.gene42686:intron | 35.0% | |
| TCAACTCATGATCATGATCT+TGG | - | chr3.3:86322977-86322996 | None:intergenic | 35.0% | |
| TCTAAGCCCAAATCAAGATT+TGG | + | chr3.3:86323155-86323174 | MS.gene42686:CDS | 35.0% | |
| TCTACCTTGTCAACCATATT+TGG | - | chr3.3:86325319-86325338 | None:intergenic | 35.0% | |
| TTATCAAGAACGTAAAGCAC+TGG | + | chr3.3:86324839-86324858 | MS.gene42686:CDS | 35.0% | |
| TTCACTACCAAGCCAAAATT+AGG | - | chr3.3:86325537-86325556 | None:intergenic | 35.0% | |
| TTTATTCTTACTGGCAGCTA+GGG | - | chr3.3:86324300-86324319 | None:intergenic | 35.0% | |
| ! | AATGTGTCCAGGTTTTCATT+TGG | + | chr3.3:86323708-86323727 | MS.gene42686:CDS | 35.0% |
| ! | CATTTGAGATAACTTGCATC+AGG | - | chr3.3:86325744-86325763 | None:intergenic | 35.0% |
| ! | CTTGTGATGGTAACATTTTG+TGG | + | chr3.3:86323584-86323603 | MS.gene42686:CDS | 35.0% |
| ! | GGTTTTCATTTGGATCAGTT+TGG | + | chr3.3:86323718-86323737 | MS.gene42686:CDS | 35.0% |
| ! | TAGGGATGAACCTTATTTCA+GGG | - | chr3.3:86323058-86323077 | None:intergenic | 35.0% |
| ! | TCTCCACTCACATTTGAAAT+AGG | - | chr3.3:86322948-86322967 | None:intergenic | 35.0% |
| !! | ATTTTCCCTTCTCCTTGTTT+TGG | + | chr3.3:86324552-86324571 | MS.gene42686:intron | 35.0% |
| !! | CTCATGGACTATGAAGATTT+TGG | + | chr3.3:86324120-86324139 | MS.gene42686:CDS | 35.0% |
| !! | GAGATTTTGGGGGTTTATTT+GGG | - | chr3.3:86323082-86323101 | None:intergenic | 35.0% |
| !! | TCTCATTGGAGCATTTTTGT+GGG | + | chr3.3:86323838-86323857 | MS.gene42686:CDS | 35.0% |
| !! | TTCTCATTGGAGCATTTTTG+TGG | + | chr3.3:86323837-86323856 | MS.gene42686:CDS | 35.0% |
| !!! | AAGGTGCTTTATTTTGTCCA+TGG | + | chr3.3:86323677-86323696 | MS.gene42686:CDS | 35.0% |
| !!! | AGGTGCTTTATTTTGTCCAT+GGG | + | chr3.3:86323678-86323697 | MS.gene42686:CDS | 35.0% |
| !!! | GTATTGGCCATTTTAGTTTC+AGG | + | chr3.3:86324017-86324036 | MS.gene42686:CDS | 35.0% |
| !!! | GTTTGTTTTTGTGTGCATTG+CGG | + | chr3.3:86323481-86323500 | MS.gene42686:CDS | 35.0% |
| !!! | TAATTTTGGCTTGGTAGTGA+AGG | + | chr3.3:86325536-86325555 | MS.gene42686:CDS | 35.0% |
| !!! | TTTGTTTTTGTGTGCATTGC+GGG | + | chr3.3:86323482-86323501 | MS.gene42686:CDS | 35.0% |
| AAAGTCTTTAGCAGATTGGG+TGG | + | chr3.3:86324721-86324740 | MS.gene42686:CDS | 40.0% | |
| AAATACACATAGGCCATGGT+TGG | - | chr3.3:86324536-86324555 | None:intergenic | 40.0% | |
| AAGCCCAAATATGGTTGACA+AGG | + | chr3.3:86325312-86325331 | MS.gene42686:CDS | 40.0% | |
| ACTCCGTCGTTTCATGATTA+AGG | + | chr3.3:86324640-86324659 | MS.gene42686:CDS | 40.0% | |
| AGCAAGAGAAAGTTTCCTCA+TGG | + | chr3.3:86324104-86324123 | MS.gene42686:CDS | 40.0% | |
| AGGAAAGTTGAATCCAGTAG+AGG | + | chr3.3:86323419-86323438 | MS.gene42686:CDS | 40.0% | |
| AGTAGTGTGGCTTCTTCTAA+TGG | + | chr3.3:86324941-86324960 | MS.gene42686:CDS | 40.0% | |
| ATGTTCTACAGACTCTCTCT+GGG | + | chr3.3:86323951-86323970 | MS.gene42686:CDS | 40.0% | |
| ATTGAACAAGCTTGTGACAG+GGG | + | chr3.3:86324899-86324918 | MS.gene42686:CDS | 40.0% | |
| CAATTGAACAAGCTTGTGAC+AGG | + | chr3.3:86324897-86324916 | MS.gene42686:CDS | 40.0% | |
| CAGATACCAAAACAAGGAGA+AGG | - | chr3.3:86324561-86324580 | None:intergenic | 40.0% | |
| CCAATCTGCTAAAGACTTTC+TGG | - | chr3.3:86324720-86324739 | None:intergenic | 40.0% | |
| CCAGAAAGTCTTTAGCAGAT+TGG | + | chr3.3:86324717-86324736 | MS.gene42686:CDS | 40.0% | |
| GAGTGACAGATACCAAAACA+AGG | - | chr3.3:86324567-86324586 | None:intergenic | 40.0% | |
| GCGAAAGAGACTAACAACAA+AGG | + | chr3.3:86323445-86323464 | MS.gene42686:CDS | 40.0% | |
| GGAGAAGGGAAAATACACAT+AGG | - | chr3.3:86324546-86324565 | None:intergenic | 40.0% | |
| GTAATGCATCCGTTTGATGT+TGG | + | chr3.3:86325074-86325093 | MS.gene42686:CDS | 40.0% | |
| GTGGCATGTTAGTTACCAAA+TGG | + | chr3.3:86323603-86323622 | MS.gene42686:CDS | 40.0% | |
| TAGAAGAAGCCACACTACTA+TGG | - | chr3.3:86324940-86324959 | None:intergenic | 40.0% | |
| TATGTTCTACAGACTCTCTC+TGG | + | chr3.3:86323950-86323969 | MS.gene42686:CDS | 40.0% | |
| TCCTTTGGTATTTCCCCTAT+TGG | + | chr3.3:86324670-86324689 | MS.gene42686:CDS | 40.0% | |
| TGGAGAGGAATCCACAATAT+TGG | + | chr3.3:86325508-86325527 | MS.gene42686:CDS | 40.0% | |
| TTATTCTTACTGGCAGCTAG+GGG | - | chr3.3:86324299-86324318 | None:intergenic | 40.0% | |
| TTTCTTTGTGCCGCCATTAA+CGG | - | chr3.3:86324050-86324069 | None:intergenic | 40.0% | |
| ! | ACTCTTGTTTCCCTTCTCAT+TGG | + | chr3.3:86323824-86323843 | MS.gene42686:CDS | 40.0% |
| ! | AGGGATGAACCTTATTTCAG+GGG | - | chr3.3:86323057-86323076 | None:intergenic | 40.0% |
| ! | ATTTGCAGCAGGAGATTTTG+GGG | - | chr3.3:86323093-86323112 | None:intergenic | 40.0% |
| ! | CAGCTGCCTATTACATTTTC+AGG | + | chr3.3:86324260-86324279 | MS.gene42686:CDS | 40.0% |
| ! | CATTTGCAGCAGGAGATTTT+GGG | - | chr3.3:86323094-86323113 | None:intergenic | 40.0% |
| ! | CTAGGGATGAACCTTATTTC+AGG | - | chr3.3:86323059-86323078 | None:intergenic | 40.0% |
| ! | GGGTGCTTTTAATCAATCGT+GGG | + | chr3.3:86323753-86323772 | MS.gene42686:CDS | 40.0% |
| ! | GGTGCTTTTAATCAATCGTG+GGG | + | chr3.3:86323754-86323773 | MS.gene42686:CDS | 40.0% |
| ! | GTAAGTTTTGCATTTGCAGC+AGG | - | chr3.3:86323104-86323123 | None:intergenic | 40.0% |
| ! | GTGTGTTATAGATGGTGTTG+AGG | + | chr3.3:86325103-86325122 | MS.gene42686:CDS | 40.0% |
| ! | TGGGTGCTTTTAATCAATCG+TGG | + | chr3.3:86323752-86323771 | MS.gene42686:CDS | 40.0% |
| ! | TTTGGAGTTTAAGGCTTTGG+AGG | + | chr3.3:86323552-86323571 | MS.gene42686:CDS | 40.0% |
| !! | ACCGTTCCAGACTTGTTATT+CGG | - | chr3.3:86323302-86323321 | None:intergenic | 40.0% |
| !! | AGCTTTGGAGTTTAAGGCTT+TGG | + | chr3.3:86323549-86323568 | MS.gene42686:CDS | 40.0% |
| !! | GAGGTATTGTATGCTTGTGA+TGG | + | chr3.3:86323571-86323590 | MS.gene42686:CDS | 40.0% |
| !! | GGAGATTTTGGGGGTTTATT+TGG | - | chr3.3:86323083-86323102 | None:intergenic | 40.0% |
| !! | TGATTAAAAGCACCCATGTG+AGG | - | chr3.3:86323748-86323767 | None:intergenic | 40.0% |
| !! | TTCAGGAGTACTACCGTTAA+TGG | + | chr3.3:86324034-86324053 | MS.gene42686:CDS | 40.0% |
| !!! | TTGGCATCCTAATTTTGGCT+TGG | + | chr3.3:86325527-86325546 | MS.gene42686:CDS | 40.0% |
| AACTGAGAAGGACAGAGCTT+TGG | + | chr3.3:86323534-86323553 | MS.gene42686:CDS | 45.0% | |
| ACGACACCAGCAGAGAAAAT+TGG | + | chr3.3:86325355-86325374 | MS.gene42686:CDS | 45.0% | |
| ACTGTGCTTCCCCTGAAATA+AGG | + | chr3.3:86323045-86323064 | MS.gene42686:CDS | 45.0% | |
| AGATACAGCCTTCTTCCACA+AGG | + | chr3.3:86325696-86325715 | MS.gene42686:CDS | 45.0% | |
| AGGTGTTCATCTCAGACACA+TGG | + | chr3.3:86325716-86325735 | MS.gene42686:CDS | 45.0% | |
| AGTTTGGAGAGAAGACCAAG+CGG | + | chr3.3:86325622-86325641 | MS.gene42686:CDS | 45.0% | |
| ATCCGTTTGATGTTGGCGAT+CGG | + | chr3.3:86325081-86325100 | MS.gene42686:CDS | 45.0% | |
| ATCGGTGGAACTCCAAGTAT+TGG | + | chr3.3:86324001-86324020 | MS.gene42686:CDS | 45.0% | |
| ATGGAAGAGGCTGAGAAGAT+CGG | + | chr3.3:86323983-86324002 | MS.gene42686:CDS | 45.0% | |
| CAAAATCTTTGCGGCCAGTT+TGG | - | chr3.3:86323789-86323808 | None:intergenic | 45.0% | |
| CACTCCTAGAACACCTTTGA+TGG | + | chr3.3:86323352-86323371 | MS.gene42686:CDS | 45.0% | |
| CATGATCATGATCTTGGCCA+TGG | - | chr3.3:86322971-86322990 | None:intergenic | 45.0% | |
| CATTCGCCGAATAACAAGTC+TGG | + | chr3.3:86323293-86323312 | MS.gene42686:CDS | 45.0% | |
| CGACACCAGCAGAGAAAATT+GGG | + | chr3.3:86325356-86325375 | MS.gene42686:CDS | 45.0% | |
| CTACTATGGTCACCACTACT+AGG | - | chr3.3:86324926-86324945 | None:intergenic | 45.0% | |
| CTTTAGCAGATTGGGTGGTA+AGG | + | chr3.3:86324726-86324745 | MS.gene42686:intron | 45.0% | |
| GACACCAGCAGAGAAAATTG+GGG | + | chr3.3:86325357-86325376 | MS.gene42686:CDS | 45.0% | |
| GATGAACACCTTGTGGAAGA+AGG | - | chr3.3:86325707-86325726 | None:intergenic | 45.0% | |
| GATGGAGAACAGAAGAGAAG+TGG | + | chr3.3:86322917-86322936 | MS.gene42686:CDS | 45.0% | |
| GCCAATAGGGGAAATACCAA+AGG | - | chr3.3:86324674-86324693 | None:intergenic | 45.0% | |
| GCCGAATAACAAGTCTGGAA+CGG | + | chr3.3:86323298-86323317 | MS.gene42686:CDS | 45.0% | |
| GGGAAAATACACATAGGCCA+TGG | - | chr3.3:86324540-86324559 | None:intergenic | 45.0% | |
| GGTTGACAAGGTAGAGTTCT+CGG | + | chr3.3:86325324-86325343 | MS.gene42686:CDS | 45.0% | |
| TACTCGCGGCTTTCATGTTT+GGG | + | chr3.3:86325009-86325028 | MS.gene42686:CDS | 45.0% | |
| TAGTGGTGACCATAGTAGTG+TGG | + | chr3.3:86324928-86324947 | MS.gene42686:CDS | 45.0% | |
| TATTGGCACAGTCAGAGACA+GGG | + | chr3.3:86324687-86324706 | MS.gene42686:CDS | 45.0% | |
| TCAAATGTGAGTGGAGACCA+TGG | + | chr3.3:86322951-86322970 | MS.gene42686:CDS | 45.0% | |
| TGTCTCTGACTGTGCCAATA+GGG | - | chr3.3:86324687-86324706 | None:intergenic | 45.0% | |
| TTCTCAGCCTCTTCCATAAG+TGG | - | chr3.3:86323980-86323999 | None:intergenic | 45.0% | |
| TTGGGGGTTTATTTGGGCTA+GGG | - | chr3.3:86323076-86323095 | None:intergenic | 45.0% | |
| TTTGGGGGTTTATTTGGGCT+AGG | - | chr3.3:86323077-86323096 | None:intergenic | 45.0% | |
| ! | ACAAGTCTGGAACGGTGAAT+CGG | + | chr3.3:86323306-86323325 | MS.gene42686:CDS | 45.0% |
| ! | GACGACGTTGCTAAAGGTTT+TGG | + | chr3.3:86323868-86323887 | MS.gene42686:CDS | 45.0% |
| ! | GCATTTGCAGCAGGAGATTT+TGG | - | chr3.3:86323095-86323114 | None:intergenic | 45.0% |
| ! | TCAGGGGAAGCACAGTTTAA+AGG | - | chr3.3:86323041-86323060 | None:intergenic | 45.0% |
| ! | TGTCTGAGATGAACACCTTG+TGG | - | chr3.3:86325714-86325733 | None:intergenic | 45.0% |
| ! | TTTGCAGCAGGAGATTTTGG+GGG | - | chr3.3:86323092-86323111 | None:intergenic | 45.0% |
| !! | AGGAGTACTACCGTTAATGG+CGG | + | chr3.3:86324037-86324056 | MS.gene42686:CDS | 45.0% |
| !! | CAGTTTGGTTCTCCTCACAT+GGG | + | chr3.3:86323733-86323752 | MS.gene42686:CDS | 45.0% |
| !! | GATGCCATCAAAGGTGTTCT+AGG | - | chr3.3:86323359-86323378 | None:intergenic | 45.0% |
| !! | GGACAGAGCTTTGGAGTTTA+AGG | + | chr3.3:86323543-86323562 | MS.gene42686:CDS | 45.0% |
| !! | TCAGTTTGGTTCTCCTCACA+TGG | + | chr3.3:86323732-86323751 | MS.gene42686:CDS | 45.0% |
| CACCGATCGCCAACATCAAA+CGG | - | chr3.3:86325086-86325105 | None:intergenic | 50.0% | |
| CTATTGGCACAGTCAGAGAC+AGG | + | chr3.3:86324686-86324705 | MS.gene42686:CDS | 50.0% | |
| CTGTCTCTGACTGTGCCAAT+AGG | - | chr3.3:86324688-86324707 | None:intergenic | 50.0% | |
| GGACACATTGCTTCAACCCA+TGG | - | chr3.3:86323697-86323716 | None:intergenic | 50.0% | |
| GGCGATCGGTGTGTTATAGA+TGG | + | chr3.3:86325095-86325114 | MS.gene42686:CDS | 50.0% | |
| GTACTCGCGGCTTTCATGTT+TGG | + | chr3.3:86325008-86325027 | MS.gene42686:CDS | 50.0% | |
| GTCTCTGACTGTGCCAATAG+GGG | - | chr3.3:86324686-86324705 | None:intergenic | 50.0% | |
| TCAGCCTCTTCCATAAGTGG+AGG | - | chr3.3:86323977-86323996 | None:intergenic | 50.0% | |
| TCTCTTTCGCTTGCCTCTAC+TGG | - | chr3.3:86323435-86323454 | None:intergenic | 50.0% | |
| TGCTGATAGGTTTAGTGGCG+AGG | - | chr3.3:86325282-86325301 | None:intergenic | 50.0% | |
| TTAGTGGCGAGGACAGAGTT+TGG | - | chr3.3:86325271-86325290 | None:intergenic | 50.0% | |
| ! | ACACCTTTGATGGCATCTCC+AGG | + | chr3.3:86323362-86323381 | MS.gene42686:CDS | 50.0% |
| ! | AGTGCCCCAATTTTCTCTGC+TGG | - | chr3.3:86325364-86325383 | None:intergenic | 50.0% |
| ! | GGGGAAGCACAGTTTAAAGG+TGG | - | chr3.3:86323038-86323057 | None:intergenic | 50.0% |
| ! | TGGGTTGAAGCAATGTGTCC+AGG | + | chr3.3:86323697-86323716 | MS.gene42686:CDS | 50.0% |
| CACCAGTTCACTTCTCCGCT+TGG | - | chr3.3:86325640-86325659 | None:intergenic | 55.0% | |
| CGAGTACTAGCTGCGATGAG+AGG | - | chr3.3:86324995-86325014 | None:intergenic | 55.0% | |
| CTCATCGCAGCTAGTACTCG+CGG | + | chr3.3:86324995-86325014 | MS.gene42686:CDS | 55.0% | |
| GAAGAGGCTGAGAAGATCGG+TGG | + | chr3.3:86323986-86324005 | MS.gene42686:CDS | 55.0% | |
| GACCAAGCGGAGAAGTGAAC+TGG | + | chr3.3:86325635-86325654 | MS.gene42686:CDS | 55.0% | |
| GCGGAGAAGTGAACTGGTGA+TGG | + | chr3.3:86325641-86325660 | MS.gene42686:CDS | 55.0% | |
| GGACCTGGAGATGCCATCAA+AGG | - | chr3.3:86323368-86323387 | None:intergenic | 55.0% | |
| GGCGACTTTGTAGAGTAGCG+AGG | - | chr3.3:86323017-86323036 | None:intergenic | 55.0% | |
| TCATCAAGATCCTCCCCAGC+AGG | - | chr3.3:86323389-86323408 | None:intergenic | 55.0% | |
| TCTCTCTGGGCCTCCACTTA+TGG | + | chr3.3:86323964-86323983 | MS.gene42686:CDS | 55.0% | |
| TGCGGCCAGTTTGGATCGAT+GGG | - | chr3.3:86323780-86323799 | None:intergenic | 55.0% | |
| TGGGCCTCCACTTATGGAAG+AGG | + | chr3.3:86323970-86323989 | MS.gene42686:CDS | 55.0% | |
| TGTGACAGGGGTCCTAGTAG+TGG | + | chr3.3:86324911-86324930 | MS.gene42686:CDS | 55.0% | |
| TTGCGGCCAGTTTGGATCGA+TGG | - | chr3.3:86323781-86323800 | None:intergenic | 55.0% | |
| ! | GTGCATTGCGGGTAGCTTGT+TGG | + | chr3.3:86323493-86323512 | MS.gene42686:CDS | 55.0% |
| ATGGCATCTCCAGGTCCTGC+TGG | + | chr3.3:86323371-86323390 | MS.gene42686:CDS | 60.0% | |
| TGGCATCTCCAGGTCCTGCT+GGG | + | chr3.3:86323372-86323391 | MS.gene42686:CDS | 60.0% | |
| TGGGGCCCATCGATCCAAAC+TGG | + | chr3.3:86323772-86323791 | MS.gene42686:CDS | 60.0% | |
| AGATCCTCCCCAGCAGGACC+TGG | - | chr3.3:86323383-86323402 | None:intergenic | 65.0% | |
| ATCTCCAGGTCCTGCTGGGG+AGG | + | chr3.3:86323376-86323395 | MS.gene42686:CDS | 65.0% | |
| GGCATCTCCAGGTCCTGCTG+GGG | + | chr3.3:86323373-86323392 | MS.gene42686:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 86322915 | 86325764 | 86322915 | ID=MS.gene42686 |
| chr3.3 | mRNA | 86322915 | 86325764 | 86322915 | ID=MS.gene42686.t1;Parent=MS.gene42686 |
| chr3.3 | exon | 86322915 | 86324308 | 86322915 | ID=MS.gene42686.t1.exon1;Parent=MS.gene42686.t1 |
| chr3.3 | CDS | 86322915 | 86324308 | 86322915 | ID=cds.MS.gene42686.t1;Parent=MS.gene42686.t1 |
| chr3.3 | exon | 86324622 | 86324742 | 86324622 | ID=MS.gene42686.t1.exon2;Parent=MS.gene42686.t1 |
| chr3.3 | CDS | 86324622 | 86324742 | 86324622 | ID=cds.MS.gene42686.t1;Parent=MS.gene42686.t1 |
| chr3.3 | exon | 86324831 | 86325124 | 86324831 | ID=MS.gene42686.t1.exon3;Parent=MS.gene42686.t1 |
| chr3.3 | CDS | 86324831 | 86325124 | 86324831 | ID=cds.MS.gene42686.t1;Parent=MS.gene42686.t1 |
| chr3.3 | exon | 86325199 | 86325401 | 86325199 | ID=MS.gene42686.t1.exon4;Parent=MS.gene42686.t1 |
| chr3.3 | CDS | 86325199 | 86325401 | 86325199 | ID=cds.MS.gene42686.t1;Parent=MS.gene42686.t1 |
| chr3.3 | exon | 86325503 | 86325764 | 86325503 | ID=MS.gene42686.t1.exon5;Parent=MS.gene42686.t1 |
| chr3.3 | CDS | 86325503 | 86325764 | 86325503 | ID=cds.MS.gene42686.t1;Parent=MS.gene42686.t1 |
| Gene Sequence |
| Protein sequence |
