Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42688.t1 | XP_003603195.2 | 95.9 | 750 | 30 | 1 | 1 | 750 | 1 | 749 | 0.00E+00 | 1383.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42688.t1 | Q9LYG9 | 55.8 | 685 | 293 | 8 | 63 | 739 | 48 | 730 | 2.4e-200 | 700.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42688.t1 | G7J8D9 | 95.9 | 750 | 30 | 1 | 1 | 750 | 1 | 749 | 0.0e+00 | 1383.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42688 | MS.gene42628 | PPI |
| MS.gene42686 | MS.gene42688 | PPI |
| MS.gene32764 | MS.gene42688 | PPI |
| MS.gene062410 | MS.gene42688 | PPI |
| MS.gene42622 | MS.gene42688 | PPI |
| MS.gene42688 | MS.gene74110 | PPI |
| MS.gene32770 | MS.gene42688 | PPI |
| MS.gene014973 | MS.gene42688 | PPI |
| MS.gene42620 | MS.gene42688 | PPI |
| MS.gene32773 | MS.gene42688 | PPI |
| MS.gene97525 | MS.gene42688 | PPI |
| MS.gene42681 | MS.gene42688 | PPI |
| MS.gene014978 | MS.gene42688 | PPI |
| MS.gene42688 | MS.gene014981 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42688.t1 | MTR_3g104920 | 95.867 | 750 | 30 | 1 | 1 | 750 | 1 | 749 | 0.0 | 1453 |
| MS.gene42688.t1 | MTR_3g104920 | 95.929 | 737 | 30 | 0 | 14 | 750 | 1 | 737 | 0.0 | 1431 |
| MS.gene42688.t1 | MTR_3g104990 | 80.595 | 773 | 125 | 5 | 1 | 750 | 1 | 771 | 0.0 | 1227 |
| MS.gene42688.t1 | MTR_3g104940 | 79.070 | 774 | 136 | 3 | 1 | 750 | 1 | 772 | 0.0 | 1197 |
| MS.gene42688.t1 | MTR_2g041220 | 51.901 | 684 | 293 | 12 | 77 | 739 | 77 | 745 | 0.0 | 673 |
| MS.gene42688.t1 | MTR_8g071250 | 43.393 | 666 | 338 | 12 | 89 | 739 | 47 | 688 | 2.36e-169 | 504 |
| MS.gene42688.t1 | MTR_1g113850 | 39.003 | 682 | 356 | 12 | 120 | 748 | 241 | 915 | 4.19e-149 | 459 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42688.t1 | AT5G12080 | 57.872 | 686 | 277 | 8 | 63 | 739 | 48 | 730 | 0.0 | 798 |
| MS.gene42688.t1 | AT5G12080 | 57.872 | 686 | 277 | 8 | 63 | 739 | 48 | 730 | 0.0 | 798 |
| MS.gene42688.t1 | AT5G12080 | 57.872 | 686 | 277 | 8 | 63 | 739 | 48 | 730 | 0.0 | 798 |
| MS.gene42688.t1 | AT5G19520 | 52.670 | 693 | 310 | 8 | 59 | 739 | 52 | 738 | 0.0 | 726 |
| MS.gene42688.t1 | AT5G19520 | 52.670 | 693 | 310 | 8 | 59 | 739 | 52 | 738 | 0.0 | 726 |
| MS.gene42688.t1 | AT2G17010 | 38.532 | 654 | 362 | 8 | 122 | 740 | 240 | 888 | 1.30e-151 | 465 |
| MS.gene42688.t1 | AT1G78610 | 40.506 | 632 | 340 | 6 | 147 | 747 | 211 | 837 | 3.75e-147 | 452 |
| MS.gene42688.t1 | AT3G14810 | 38.897 | 689 | 348 | 12 | 114 | 744 | 188 | 861 | 1.60e-146 | 451 |
| MS.gene42688.t1 | AT1G53470 | 39.871 | 622 | 321 | 9 | 170 | 746 | 251 | 864 | 2.56e-146 | 450 |
| MS.gene42688.t1 | AT2G17000 | 39.867 | 602 | 324 | 7 | 179 | 748 | 234 | 829 | 1.68e-135 | 421 |
| MS.gene42688.t1 | AT2G17000 | 39.867 | 602 | 324 | 7 | 179 | 748 | 234 | 829 | 2.10e-135 | 421 |
| MS.gene42688.t1 | AT3G14810 | 36.430 | 689 | 330 | 13 | 114 | 744 | 188 | 826 | 1.39e-127 | 400 |
| MS.gene42688.t1 | AT2G17010 | 35.854 | 357 | 193 | 7 | 173 | 498 | 295 | 646 | 2.86e-61 | 218 |
Find 153 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATACTTTCAACCATATT+TGG | 0.059180 | 3.3:-86299640 | None:intergenic |
| GACACTGTTGCTATCGATTT+TGG | 0.151071 | 3.3:+86298133 | MS.gene42688:CDS |
| TTCACCTAGAACACCTTTAA+TGG | 0.166704 | 3.3:+86297614 | MS.gene42688:CDS |
| AGGATACATATTTGGAGTTT+AGG | 0.218904 | 3.3:+86297807 | MS.gene42688:CDS |
| ACAATGAACTTTCAAGAGTT+TGG | 0.224035 | 3.3:+86299943 | MS.gene42688:CDS |
| CAGCTGTTACTTCACCTTAT+AGG | 0.232327 | 3.3:+86297583 | MS.gene42688:CDS |
| CTTCTGTAATAATTGCTAAT+TGG | 0.235852 | 3.3:-86299616 | None:intergenic |
| TAGTAACATTCTCTTCTAAA+AGG | 0.249703 | 3.3:-86297539 | None:intergenic |
| ACGACACCAGCAGAGAAAAT+TGG | 0.254266 | 3.3:+86299679 | MS.gene42688:CDS |
| GCATCTCCAGGTTCTTCTTC+TGG | 0.277547 | 3.3:+86297636 | MS.gene42688:CDS |
| GGATACATATTTGGAGTTTA+GGG | 0.285104 | 3.3:+86297808 | MS.gene42688:CDS |
| TTGTTCTACAAACCTTGATT+TGG | 0.285408 | 3.3:-86297496 | None:intergenic |
| CAATGAACTTTCAAGAGTTT+GGG | 0.286227 | 3.3:+86299944 | MS.gene42688:CDS |
| AACTGAGAAGGATACATATT+TGG | 0.299045 | 3.3:+86297799 | MS.gene42688:CDS |
| TTCGGGAGTTCAACTGTTAA+AGG | 0.302616 | 3.3:+86298299 | MS.gene42688:CDS |
| ATTACTACCAAGCTGAAATT+AGG | 0.311064 | 3.3:-86299871 | None:intergenic |
| TCTAAAAGGGTCTCATCAAT+AGG | 0.325584 | 3.3:-86297525 | None:intergenic |
| CTATACTTTCAACCATATTT+GGG | 0.329682 | 3.3:-86299639 | None:intergenic |
| ATATTTGGAGTTTAGGGCTT+TGG | 0.330737 | 3.3:+86297814 | MS.gene42688:CDS |
| CATTTGAGAGAACTTGTATC+AGG | 0.336074 | 3.3:-86300078 | None:intergenic |
| TCTCTCCGGGCCTCCACTAA+TGG | 0.337430 | 3.3:+86298229 | MS.gene42688:CDS |
| CTACTGGCCCAGGCAGATAC+AGG | 0.339554 | 3.3:+86299013 | MS.gene42688:CDS |
| ACTCCGTAGATTCATGATTA+AGG | 0.340419 | 3.3:+86298967 | MS.gene42688:CDS |
| ACTCTTGTTTCCCTTCTCAT+TGG | 0.349071 | 3.3:+86298089 | MS.gene42688:CDS |
| TTCCCAGCCTCTTCCATTAG+TGG | 0.352581 | 3.3:-86298242 | None:intergenic |
| GTACTAGCGGGGTTCATGTT+TGG | 0.355463 | 3.3:+86299334 | MS.gene42688:CDS |
| TTATTACAGAAGCCCAAATA+TGG | 0.356757 | 3.3:+86299627 | MS.gene42688:CDS |
| GAACCTGGAGATGCCATTAA+AGG | 0.366672 | 3.3:-86297627 | None:intergenic |
| AACATTCTTGAAAACATAAT+AGG | 0.371862 | 3.3:-86298531 | None:intergenic |
| TGTTCTACAAACCTTGATTT+GGG | 0.374332 | 3.3:-86297495 | None:intergenic |
| GCTTAGAATACACTGATCTT+AGG | 0.375626 | 3.3:-86297473 | None:intergenic |
| CTGTATCTGCCTGGGCCAGT+AGG | 0.376769 | 3.3:-86299012 | None:intergenic |
| AGTAGTGTGGCTTCTTCTAA+TGG | 0.385108 | 3.3:+86299267 | MS.gene42688:CDS |
| TGCATCTACCAAAATCTTCA+TGG | 0.385620 | 3.3:-86298393 | None:intergenic |
| TAGTCGCTAGTCTCTTATGC+TGG | 0.386965 | 3.3:-86297707 | None:intergenic |
| CTTTCAAGAGTTTGGGGAGA+AGG | 0.394006 | 3.3:+86299951 | MS.gene42688:CDS |
| GGTGAATAAGAGTTCCTATA+AGG | 0.395222 | 3.3:-86297597 | None:intergenic |
| TCAACCCATGATCATGATCT+TGG | 0.398144 | 3.3:-86297305 | None:intergenic |
| AGAGAAAGAGGTTATTGATA+TGG | 0.399291 | 3.3:+86298328 | MS.gene42688:CDS |
| ATAATTGCTAATTGGTTTAG+TGG | 0.405746 | 3.3:-86299608 | None:intergenic |
| TCAGTTTAGTTCTCCTTACA+TGG | 0.405836 | 3.3:+86297997 | MS.gene42688:CDS |
| TAATTAGCCCTGTATCTGCC+TGG | 0.406972 | 3.3:-86299021 | None:intergenic |
| GATGCCATTAAAGGTGTTCT+AGG | 0.410220 | 3.3:-86297618 | None:intergenic |
| CATTTGTAGCAGGAACTTGT+GGG | 0.411786 | 3.3:-86297425 | None:intergenic |
| GGAGTTTAGGGCTTTGGAGG+TGG | 0.414476 | 3.3:+86297820 | MS.gene42688:CDS |
| ATCCTGACGAAATCATTTAT+AGG | 0.416707 | 3.3:+86297664 | MS.gene42688:CDS |
| TGTATCTGCCTGGGCCAGTA+GGG | 0.421172 | 3.3:-86299011 | None:intergenic |
| TTAGTGGCGAGGGCAGAGTT+TGG | 0.428516 | 3.3:-86299592 | None:intergenic |
| TGCCTATAAATGATTTCGTC+AGG | 0.429312 | 3.3:-86297666 | None:intergenic |
| AACAATGTGCATGAACCATT+TGG | 0.430283 | 3.3:-86297883 | None:intergenic |
| TTTGGAGTTTAGGGCTTTGG+AGG | 0.436552 | 3.3:+86297817 | MS.gene42688:CDS |
| TATGTTCTGCAGACTCTCTC+CGG | 0.438869 | 3.3:+86298215 | MS.gene42688:CDS |
| GAGTCTGCAGAACATATTGA+TGG | 0.441671 | 3.3:-86298208 | None:intergenic |
| ATGGAAGAGGCTGGGAAAAT+CGG | 0.443550 | 3.3:+86298248 | MS.gene42688:CDS |
| GGTTGAAAGTATAGAGTTCT+CGG | 0.444414 | 3.3:+86299648 | MS.gene42688:CDS |
| TCATTTGTAGCAGGAACTTG+TGG | 0.446523 | 3.3:-86297426 | None:intergenic |
| TTGGCTTGTTAGTTACCAAA+TGG | 0.451486 | 3.3:+86297868 | MS.gene42688:CDS |
| CTTGAAGCTTAATAATGAAA+AGG | 0.456438 | 3.3:+86299561 | MS.gene42688:CDS |
| GGCGTGGACCATGAAGATTT+TGG | 0.456683 | 3.3:+86298385 | MS.gene42688:CDS |
| ATCAAGTGAATTAGAGATTG+TGG | 0.457488 | 3.3:-86298435 | None:intergenic |
| CTAAAAGGGTCTCATCAATA+GGG | 0.461269 | 3.3:-86297524 | None:intergenic |
| GGCGATCGATGTGTTGTAGA+TGG | 0.464642 | 3.3:+86299421 | MS.gene42688:CDS |
| GTGTGTCGTGGGTATCTTGT+TGG | 0.466820 | 3.3:+86297758 | MS.gene42688:CDS |
| CGGAGAGGAATCCACAATAC+TGG | 0.472256 | 3.3:+86299845 | MS.gene42688:CDS |
| AGTAACATTCTCTTCTAAAA+GGG | 0.482726 | 3.3:-86297538 | None:intergenic |
| CTCTTCCATTAGTGGAGGCC+CGG | 0.490275 | 3.3:-86298234 | None:intergenic |
| CATGACCAAGATCATGATCA+TGG | 0.492732 | 3.3:+86297300 | MS.gene42688:CDS |
| ACTGTGCTTCTCCTGAGATA+AGG | 0.493811 | 3.3:+86297379 | MS.gene42688:CDS |
| CAATTAAACAAGCTTGTGAC+AGG | 0.494751 | 3.3:+86299223 | MS.gene42688:CDS |
| CTTCCTTAATCATGAATCTA+CGG | 0.496022 | 3.3:-86298970 | None:intergenic |
| AAATGTAAATAAGATTAAGA+TGG | 0.497083 | 3.3:+86299903 | MS.gene42688:CDS |
| GCATAAGAGACTAGCGACTA+AGG | 0.497296 | 3.3:+86297710 | MS.gene42688:CDS |
| TGTATTTCCCCTACTGGCCC+AGG | 0.497804 | 3.3:+86299003 | MS.gene42688:CDS |
| AGTCGCTAGTCTCTTATGCT+GGG | 0.498583 | 3.3:-86297706 | None:intergenic |
| TTGCGGCTAATTTAGATCGC+TGG | 0.498595 | 3.3:-86298043 | None:intergenic |
| TCCAGGTTCTTCTTCTGGTG+AGG | 0.503770 | 3.3:+86297641 | MS.gene42688:CDS |
| CATCGATCGCCAACATCGAA+TGG | 0.504479 | 3.3:-86299409 | None:intergenic |
| AATGTAAATAAGATTAAGAT+GGG | 0.505449 | 3.3:+86299904 | MS.gene42688:CDS |
| CCTCCACTAATGGAAGAGGC+TGG | 0.505601 | 3.3:+86298239 | MS.gene42688:CDS |
| TTCATGTTTGTGTGTGTCGT+GGG | 0.518234 | 3.3:+86297747 | MS.gene42688:CDS |
| TTGAACTCCCGAAACTAAAA+CGG | 0.519838 | 3.3:-86298289 | None:intergenic |
| CTTGGGGTGAACCTTATCTC+AGG | 0.520160 | 3.3:-86297390 | None:intergenic |
| CATTACAAACACAAAGATGA+TGG | 0.521560 | 3.3:-86299383 | None:intergenic |
| CTATATTCTTACTTGCAACA+AGG | 0.521854 | 3.3:-86298563 | None:intergenic |
| TGGGTTGAAGCAATGTGTCC+AGG | 0.522262 | 3.3:+86297962 | MS.gene42688:CDS |
| TGTATTCTAAGCCCAAATCA+AGG | 0.522553 | 3.3:+86297484 | MS.gene42688:CDS |
| AACTGATCCAAATGAAAACC+TGG | 0.523400 | 3.3:-86297980 | None:intergenic |
| ATCGGCAGATCTCAAAGTAT+TGG | 0.525382 | 3.3:+86298266 | MS.gene42688:CDS |
| TCATCACAGCTAGTACTAGC+GGG | 0.526862 | 3.3:+86299322 | MS.gene42688:CDS |
| TCGGAAAAGTGAACTAGTGA+TGG | 0.532064 | 3.3:+86299978 | MS.gene42688:CDS |
| AAATTAGGATGCCAGTATTG+TGG | 0.533187 | 3.3:-86299856 | None:intergenic |
| GCCAGTAGGGGAAATACAAA+AGG | 0.533230 | 3.3:-86298998 | None:intergenic |
| TGATAAATAGTACCCATGTA+AGG | 0.534123 | 3.3:-86298010 | None:intergenic |
| TCCTCACCAGAAGAAGAACC+TGG | 0.538196 | 3.3:-86297642 | None:intergenic |
| GATGAACACCTTGTGGAAGA+AGG | 0.541949 | 3.3:-86300041 | None:intergenic |
| CGGGCCTCCACTAATGGAAG+AGG | 0.542792 | 3.3:+86298235 | MS.gene42688:CDS |
| ACACCTTTAATGGCATCTCC+AGG | 0.542913 | 3.3:+86297624 | MS.gene42688:CDS |
| TGCTAATTGGTTTAGTGGCG+AGG | 0.543238 | 3.3:-86299603 | None:intergenic |
| CCAGCCTCTTCCATTAGTGG+AGG | 0.543767 | 3.3:-86298239 | None:intergenic |
| GAGGTGGTGTATGCTTGTGA+TGG | 0.544535 | 3.3:+86297836 | MS.gene42688:CDS |
| TAAAGAAATTACTAATGAGA+TGG | 0.545783 | 3.3:+86298493 | MS.gene42688:CDS |
| CTCCACTAATGGAAGAGGCT+GGG | 0.547360 | 3.3:+86298240 | MS.gene42688:CDS |
| GTTCATGTTTGTGTGTGTCG+TGG | 0.551999 | 3.3:+86297746 | MS.gene42688:CDS |
| GGACACATTGCTTCAACCCA+TGG | 0.552760 | 3.3:-86297959 | None:intergenic |
| AATTAGCCCTGTATCTGCCT+GGG | 0.553573 | 3.3:-86299020 | None:intergenic |
| ATGTTCTGCAGACTCTCTCC+GGG | 0.553700 | 3.3:+86298216 | MS.gene42688:CDS |
| CTGGCATCCTAATTTCAGCT+TGG | 0.555043 | 3.3:+86299864 | MS.gene42688:CDS |
| ATTTGTAGCAGGAACTTGTG+GGG | 0.558637 | 3.3:-86297424 | None:intergenic |
| TAAAGGTGGCACAGAGAAAG+AGG | 0.562858 | 3.3:+86298316 | MS.gene42688:CDS |
| GTAATGCATCCATTCGATGT+TGG | 0.562974 | 3.3:+86299400 | MS.gene42688:CDS |
| GATGGTAACAATAAGCATCA+AGG | 0.568612 | 3.3:+86297204 | MS.gene42688:CDS |
| TATATTCTTACTTGCAACAA+GGG | 0.569030 | 3.3:-86298562 | None:intergenic |
| TAGATGCAGTGATGAATTCA+AGG | 0.569731 | 3.3:+86298408 | MS.gene42688:CDS |
| GAAGAAAAGAGAAGTGGTGG+TGG | 0.569818 | 3.3:+86297248 | MS.gene42688:CDS |
| CATGATCATGATCTTGGTCA+TGG | 0.572577 | 3.3:-86297299 | None:intergenic |
| AGGTGGTGAAGTAAACATGA+TGG | 0.572945 | 3.3:+86297224 | MS.gene42688:CDS |
| TTTGTAGCAGGAACTTGTGG+GGG | 0.574718 | 3.3:-86297423 | None:intergenic |
| AGTTTGGGGAGAAGGTGAAT+CGG | 0.586028 | 3.3:+86299959 | MS.gene42688:CDS |
| TTATCAAGAACGTAAAGCAC+TGG | 0.590875 | 3.3:+86299165 | MS.gene42688:CDS |
| CAGTTTAGTTCTCCTTACAT+GGG | 0.590938 | 3.3:+86297998 | MS.gene42688:CDS |
| TGCTTAGGTTGATGAATGGA+TGG | 0.601864 | 3.3:+86297186 | None:intergenic |
| GCTAATTGGTTTAGTGGCGA+GGG | 0.603953 | 3.3:-86299602 | None:intergenic |
| GTATCTGCCTGGGCCAGTAG+GGG | 0.605173 | 3.3:-86299010 | None:intergenic |
| GATCAAAGAAAGATTTGACA+TGG | 0.605754 | 3.3:-86298166 | None:intergenic |
| GGTTTCTGAATGATGTAACA+TGG | 0.606401 | 3.3:+86298066 | MS.gene42688:CDS |
| AAAGTCTTTAGCAGATTGGG+TGG | 0.609117 | 3.3:+86299048 | MS.gene42688:CDS |
| CTCATCACAGCTAGTACTAG+CGG | 0.611663 | 3.3:+86299321 | MS.gene42688:CDS |
| ATGACCAAGATCATGATCAT+GGG | 0.612435 | 3.3:+86297301 | MS.gene42688:CDS |
| AGCGATCTAAATTAGCCGCA+AGG | 0.612871 | 3.3:+86298045 | MS.gene42688:CDS |
| AATTAAACAAGCTTGTGACA+GGG | 0.617603 | 3.3:+86299224 | MS.gene42688:CDS |
| TACATCATTCAGAAACCTTG+CGG | 0.619295 | 3.3:-86298060 | None:intergenic |
| CTAGTACTAGCTGTGATGAG+AGG | 0.620783 | 3.3:-86299318 | None:intergenic |
| GGGAGTTCAACTGTTAAAGG+TGG | 0.622194 | 3.3:+86298302 | MS.gene42688:CDS |
| GGTGGTGGCAATTTCAAATG+TGG | 0.624592 | 3.3:+86297263 | MS.gene42688:CDS |
| GATGGAGAAGAAAAGAGAAG+TGG | 0.625504 | 3.3:+86297242 | MS.gene42688:CDS |
| TGTGACAGGGGTCTTAGTAG+TGG | 0.625559 | 3.3:+86299237 | MS.gene42688:CDS |
| GGTACTATTTATCAATCATG+AGG | 0.633489 | 3.3:+86298019 | MS.gene42688:CDS |
| GATGAAGCAAGAGAAAGTCT+CGG | 0.637612 | 3.3:+86298364 | MS.gene42688:CDS |
| ATTAAACAAGCTTGTGACAG+GGG | 0.640205 | 3.3:+86299225 | MS.gene42688:CDS |
| ATATTCTTACTTGCAACAAG+GGG | 0.645688 | 3.3:-86298561 | None:intergenic |
| TATCTGAGATGAACACCTTG+TGG | 0.649979 | 3.3:-86300048 | None:intergenic |
| GGAGAAGAAAAGAGAAGTGG+TGG | 0.653179 | 3.3:+86297245 | MS.gene42688:CDS |
| TAACAGCTGAGGAACTGAGA+AGG | 0.655836 | 3.3:+86297787 | MS.gene42688:CDS |
| TACTGGCCCAGGCAGATACA+GGG | 0.658380 | 3.3:+86299014 | MS.gene42688:CDS |
| AATGAACTTTCAAGAGTTTG+GGG | 0.659127 | 3.3:+86299945 | MS.gene42688:CDS |
| GTGGTGGCAATTTCAAATGT+GGG | 0.661574 | 3.3:+86297264 | MS.gene42688:CDS |
| AGCAAGAGAAAGTCTCGGCG+TGG | 0.668540 | 3.3:+86298369 | MS.gene42688:CDS |
| GTTGGCTAGCATAACAGCTG+AGG | 0.671221 | 3.3:+86297776 | MS.gene42688:CDS |
| ATGTGTTGTAGATGGTGTTG+AGG | 0.674889 | 3.3:+86299429 | MS.gene42688:CDS |
| TAGTGGTGAGCATAGTAGTG+TGG | 0.676510 | 3.3:+86299254 | MS.gene42688:CDS |
| CATCACAGCTAGTACTAGCG+GGG | 0.699530 | 3.3:+86299323 | MS.gene42688:CDS |
| AGATACAGCCTTCTTCCACA+AGG | 0.711384 | 3.3:+86300033 | MS.gene42688:CDS |
| GGTAACAATAAGCATCAAGG+TGG | 0.751134 | 3.3:+86297207 | MS.gene42688:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAAAAAAAAAAAAAT+AGG | + | chr3.3:86299818-86299837 | MS.gene42688:intron | 0.0% |
| !! | AAATGTAAATAAGATTAAGA+TGG | + | chr3.3:86299903-86299922 | MS.gene42688:CDS | 15.0% |
| !! | AATGTAAATAAGATTAAGAT+GGG | + | chr3.3:86299904-86299923 | MS.gene42688:CDS | 15.0% |
| !!! | ATATAGAATGCATTATTTTT+TGG | + | chr3.3:86298580-86298599 | MS.gene42688:intron | 15.0% |
| !!! | ATTAATTTGTATATCCAATT+TGG | + | chr3.3:86298848-86298867 | MS.gene42688:intron | 15.0% |
| !!! | TATAGAATGCATTATTTTTT+GGG | + | chr3.3:86298581-86298600 | MS.gene42688:intron | 15.0% |
| !!! | TTAATTTGTATATCCAATTT+GGG | + | chr3.3:86298849-86298868 | MS.gene42688:intron | 15.0% |
| !! | AAAAAAAAAAAATAGGTACG+CGG | + | chr3.3:86299825-86299844 | MS.gene42688:intron | 20.0% |
| !! | AACATTCTTGAAAACATAAT+AGG | - | chr3.3:86298534-86298553 | None:intergenic | 20.0% |
| !! | TAAAGAAATTACTAATGAGA+TGG | + | chr3.3:86298493-86298512 | MS.gene42688:CDS | 20.0% |
| !! | TCAAATAAGTCAATGTAAAT+AGG | - | chr3.3:86298663-86298682 | None:intergenic | 20.0% |
| !!! | ATAGAATGCATTATTTTTTG+GGG | + | chr3.3:86298582-86298601 | MS.gene42688:intron | 20.0% |
| !!! | GAAAAGTTTTATCACAAATT+TGG | + | chr3.3:86299736-86299755 | MS.gene42688:intron | 20.0% |
| !!! | TGTTTGTATTTTTCAGTTAA+AGG | + | chr3.3:86299141-86299160 | MS.gene42688:intron | 20.0% |
| ! | AGTTATCATCATCATAATGA+AGG | + | chr3.3:86299094-86299113 | MS.gene42688:intron | 25.0% |
| ! | CTATACTTTCAACCATATTT+GGG | - | chr3.3:86299642-86299661 | None:intergenic | 25.0% |
| ! | CTTCTGTAATAATTGCTAAT+TGG | - | chr3.3:86299619-86299638 | None:intergenic | 25.0% |
| ! | CTTGAAGCTTAATAATGAAA+AGG | + | chr3.3:86299561-86299580 | MS.gene42688:CDS | 25.0% |
| ! | TAGCTAATGAAAACAACTTA+TGG | + | chr3.3:86298771-86298790 | MS.gene42688:intron | 25.0% |
| ! | TAGTAACATTCTCTTCTAAA+AGG | - | chr3.3:86297542-86297561 | None:intergenic | 25.0% |
| ! | TATATTCTTACTTGCAACAA+GGG | - | chr3.3:86298565-86298584 | None:intergenic | 25.0% |
| ! | TATTGATGCATTGAATTATC+TGG | + | chr3.3:86299497-86299516 | MS.gene42688:intron | 25.0% |
| ! | TCTATACTTTCAACCATATT+TGG | - | chr3.3:86299643-86299662 | None:intergenic | 25.0% |
| !! | AGTAACATTCTCTTCTAAAA+GGG | - | chr3.3:86297541-86297560 | None:intergenic | 25.0% |
| !! | ATAATTGCTAATTGGTTTAG+TGG | - | chr3.3:86299611-86299630 | None:intergenic | 25.0% |
| !! | GAACTTTTTGTTGAAGAAAA+AGG | + | chr3.3:86297923-86297942 | MS.gene42688:CDS | 25.0% |
| !!! | AGAGTTATTGTTGCTTTTAA+GGG | + | chr3.3:86298637-86298656 | MS.gene42688:intron | 25.0% |
| !!! | ATAAGTTGTTTTCATTAGCT+AGG | - | chr3.3:86298772-86298791 | None:intergenic | 25.0% |
| !!! | TAGAATGCATTATTTTTTGG+GGG | + | chr3.3:86298583-86298602 | MS.gene42688:intron | 25.0% |
| !!! | TAGAGTTATTGTTGCTTTTA+AGG | + | chr3.3:86298636-86298655 | MS.gene42688:intron | 25.0% |
| !!! | TTTTAGAAGAGAATGTTACT+AGG | + | chr3.3:86297541-86297560 | MS.gene42688:CDS | 25.0% |
| AACTGAGAAGGATACATATT+TGG | + | chr3.3:86297799-86297818 | MS.gene42688:CDS | 30.0% | |
| AAGAGTGGTATATCAAAACA+AGG | - | chr3.3:86298896-86298915 | None:intergenic | 30.0% | |
| AATGAACTTTCAAGAGTTTG+GGG | + | chr3.3:86299945-86299964 | MS.gene42688:CDS | 30.0% | |
| AATGTCCCTATTCATAAAGA+GGG | - | chr3.3:86298936-86298955 | None:intergenic | 30.0% | |
| AATTAAACAAGCTTGTGACA+GGG | + | chr3.3:86299224-86299243 | MS.gene42688:CDS | 30.0% | |
| ACAAACATTATAGTCGAAAC+AGG | - | chr3.3:86299128-86299147 | None:intergenic | 30.0% | |
| ACAATGAACTTTCAAGAGTT+TGG | + | chr3.3:86299943-86299962 | MS.gene42688:CDS | 30.0% | |
| AGAGAAAGAGGTTATTGATA+TGG | + | chr3.3:86298328-86298347 | MS.gene42688:CDS | 30.0% | |
| ATATACATTTAGGCCCAAAT+TGG | - | chr3.3:86298865-86298884 | None:intergenic | 30.0% | |
| ATATTCTTACTTGCAACAAG+GGG | - | chr3.3:86298564-86298583 | None:intergenic | 30.0% | |
| ATCAAGTGAATTAGAGATTG+TGG | - | chr3.3:86298438-86298457 | None:intergenic | 30.0% | |
| ATCCTGACGAAATCATTTAT+AGG | + | chr3.3:86297664-86297683 | MS.gene42688:CDS | 30.0% | |
| ATTACTACCAAGCTGAAATT+AGG | - | chr3.3:86299874-86299893 | None:intergenic | 30.0% | |
| CAAAAAGTCTTTAGCAGATT+GGG | + | chr3.3:86299045-86299064 | MS.gene42688:CDS | 30.0% | |
| CAATGAACTTTCAAGAGTTT+GGG | + | chr3.3:86299944-86299963 | MS.gene42688:CDS | 30.0% | |
| CACTGAAAGAAAAAATAACG+AGG | + | chr3.3:86299704-86299723 | MS.gene42688:CDS | 30.0% | |
| CATTACAAACACAAAGATGA+TGG | - | chr3.3:86299386-86299405 | None:intergenic | 30.0% | |
| CTATATTCTTACTTGCAACA+AGG | - | chr3.3:86298566-86298585 | None:intergenic | 30.0% | |
| CTTCCTTAATCATGAATCTA+CGG | - | chr3.3:86298973-86298992 | None:intergenic | 30.0% | |
| GATCAAAGAAAGATTTGACA+TGG | - | chr3.3:86298169-86298188 | None:intergenic | 30.0% | |
| GATGTAAAAAATGAACGAAC+TGG | + | chr3.3:86298470-86298489 | MS.gene42688:CDS | 30.0% | |
| GGTACTATTTATCAATCATG+AGG | + | chr3.3:86298019-86298038 | MS.gene42688:CDS | 30.0% | |
| GTATATCAAAACAAGGAGAA+GGG | - | chr3.3:86298889-86298908 | None:intergenic | 30.0% | |
| TGATAAATAGTACCCATGTA+AGG | - | chr3.3:86298013-86298032 | None:intergenic | 30.0% | |
| TGTTCTACAAACCTTGATTT+GGG | - | chr3.3:86297498-86297517 | None:intergenic | 30.0% | |
| TTATTACAGAAGCCCAAATA+TGG | + | chr3.3:86299627-86299646 | MS.gene42688:CDS | 30.0% | |
| TTGTTCTACAAACCTTGATT+TGG | - | chr3.3:86297499-86297518 | None:intergenic | 30.0% | |
| ! | AGGATACATATTTGGAGTTT+AGG | + | chr3.3:86297807-86297826 | MS.gene42688:CDS | 30.0% |
| ! | GGATACATATTTGGAGTTTA+GGG | + | chr3.3:86297808-86297827 | MS.gene42688:CDS | 30.0% |
| AAATTAGGATGCCAGTATTG+TGG | - | chr3.3:86299859-86299878 | None:intergenic | 35.0% | |
| AACAATGTGCATGAACCATT+TGG | - | chr3.3:86297886-86297905 | None:intergenic | 35.0% | |
| AACTGATCCAAATGAAAACC+TGG | - | chr3.3:86297983-86298002 | None:intergenic | 35.0% | |
| AATGTGCCCTCTTTATGAAT+AGG | + | chr3.3:86298927-86298946 | MS.gene42688:intron | 35.0% | |
| ACAAAAATGCTCCAATGAGA+AGG | - | chr3.3:86298103-86298122 | None:intergenic | 35.0% | |
| ACTCCGTAGATTCATGATTA+AGG | + | chr3.3:86298967-86298986 | MS.gene42688:CDS | 35.0% | |
| ATGACCAAGATCATGATCAT+GGG | + | chr3.3:86297301-86297320 | MS.gene42688:CDS | 35.0% | |
| ATGTGCCCTCTTTATGAATA+GGG | + | chr3.3:86298928-86298947 | MS.gene42688:intron | 35.0% | |
| ATTAAACAAGCTTGTGACAG+GGG | + | chr3.3:86299225-86299244 | MS.gene42688:CDS | 35.0% | |
| CAAAAATGCTCCAATGAGAA+GGG | - | chr3.3:86298102-86298121 | None:intergenic | 35.0% | |
| CAATGTCCCTATTCATAAAG+AGG | - | chr3.3:86298937-86298956 | None:intergenic | 35.0% | |
| CAATTAAACAAGCTTGTGAC+AGG | + | chr3.3:86299223-86299242 | MS.gene42688:CDS | 35.0% | |
| CATTTGAGAGAACTTGTATC+AGG | - | chr3.3:86300081-86300100 | None:intergenic | 35.0% | |
| CCAAAAAGTCTTTAGCAGAT+TGG | + | chr3.3:86299044-86299063 | MS.gene42688:CDS | 35.0% | |
| CTAAAAGGGTCTCATCAATA+GGG | - | chr3.3:86297527-86297546 | None:intergenic | 35.0% | |
| CTGTATACACATTTGTGAGA+CGG | + | chr3.3:86298700-86298719 | MS.gene42688:intron | 35.0% | |
| GATGGTAACAATAAGCATCA+AGG | + | chr3.3:86297204-86297223 | MS.gene42688:CDS | 35.0% | |
| GCTTAGAATACACTGATCTT+AGG | - | chr3.3:86297476-86297495 | None:intergenic | 35.0% | |
| GGTATATCAAAACAAGGAGA+AGG | - | chr3.3:86298890-86298909 | None:intergenic | 35.0% | |
| GGTGAATAAGAGTTCCTATA+AGG | - | chr3.3:86297600-86297619 | None:intergenic | 35.0% | |
| GGTTTCTGAATGATGTAACA+TGG | + | chr3.3:86298066-86298085 | MS.gene42688:CDS | 35.0% | |
| TACATCATTCAGAAACCTTG+CGG | - | chr3.3:86298063-86298082 | None:intergenic | 35.0% | |
| TAGATGCAGTGATGAATTCA+AGG | + | chr3.3:86298408-86298427 | MS.gene42688:CDS | 35.0% | |
| TCTAAAAGGGTCTCATCAAT+AGG | - | chr3.3:86297528-86297547 | None:intergenic | 35.0% | |
| TGCATCTACCAAAATCTTCA+TGG | - | chr3.3:86298396-86298415 | None:intergenic | 35.0% | |
| TGCCTATAAATGATTTCGTC+AGG | - | chr3.3:86297669-86297688 | None:intergenic | 35.0% | |
| TGTATTCTAAGCCCAAATCA+AGG | + | chr3.3:86297484-86297503 | MS.gene42688:CDS | 35.0% | |
| TTATCAAGAACGTAAAGCAC+TGG | + | chr3.3:86299165-86299184 | MS.gene42688:CDS | 35.0% | |
| TTCACCTAGAACACCTTTAA+TGG | + | chr3.3:86297614-86297633 | MS.gene42688:CDS | 35.0% | |
| TTGAACTCCCGAAACTAAAA+CGG | - | chr3.3:86298292-86298311 | None:intergenic | 35.0% | |
| TTGAATTATCTGGCAGCTAT+TGG | + | chr3.3:86299507-86299526 | MS.gene42688:intron | 35.0% | |
| ! | AATGTGTCCAGGTTTTCATT+TGG | + | chr3.3:86297973-86297992 | MS.gene42688:CDS | 35.0% |
| ! | ATATTTGGAGTTTAGGGCTT+TGG | + | chr3.3:86297814-86297833 | MS.gene42688:CDS | 35.0% |
| ! | CCAATCTGCTAAAGACTTTT+TGG | - | chr3.3:86299047-86299066 | None:intergenic | 35.0% |
| ! | GGTTGAAAGTATAGAGTTCT+CGG | + | chr3.3:86299648-86299667 | MS.gene42688:CDS | 35.0% |
| ! | GTAAGGTTTTCATTTGTAGC+AGG | - | chr3.3:86297438-86297457 | None:intergenic | 35.0% |
| !! | CAGTTTAGTTCTCCTTACAT+GGG | + | chr3.3:86297998-86298017 | MS.gene42688:CDS | 35.0% |
| !! | CATTTTAGCAACAACAAGAG+TGG | - | chr3.3:86298911-86298930 | None:intergenic | 35.0% |
| !! | TCAGTTTAGTTCTCCTTACA+TGG | + | chr3.3:86297997-86298016 | MS.gene42688:CDS | 35.0% |
| !! | TCTCATTGGAGCATTTTTGT+GGG | + | chr3.3:86298103-86298122 | MS.gene42688:CDS | 35.0% |
| !! | TTCTCATTGGAGCATTTTTG+TGG | + | chr3.3:86298102-86298121 | MS.gene42688:CDS | 35.0% |
| !! | TTGGCTTGTTAGTTACCAAA+TGG | + | chr3.3:86297868-86297887 | MS.gene42688:CDS | 35.0% |
| !!! | AAGGTGCTTTATTTTGTCCA+TGG | + | chr3.3:86297942-86297961 | MS.gene42688:CDS | 35.0% |
| !!! | AGGTGCTTTATTTTGTCCAT+GGG | + | chr3.3:86297943-86297962 | MS.gene42688:CDS | 35.0% |
| !!! | AGTATTGGCCGTTTTAGTTT+CGG | + | chr3.3:86298281-86298300 | MS.gene42688:CDS | 35.0% |
| !!! | CTTGTGATGGTGACATTTTT+TGG | + | chr3.3:86297849-86297868 | MS.gene42688:CDS | 35.0% |
| AAAAAAATAGGTACGCGGAG+AGG | + | chr3.3:86299830-86299849 | MS.gene42688:intron | 40.0% | |
| AAAGTCTTTAGCAGATTGGG+TGG | + | chr3.3:86299048-86299067 | MS.gene42688:CDS | 40.0% | |
| AGGTGGTGAAGTAAACATGA+TGG | + | chr3.3:86297224-86297243 | MS.gene42688:CDS | 40.0% | |
| AGTAGTGTGGCTTCTTCTAA+TGG | + | chr3.3:86299267-86299286 | MS.gene42688:CDS | 40.0% | |
| ATCGGCAGATCTCAAAGTAT+TGG | + | chr3.3:86298266-86298285 | MS.gene42688:CDS | 40.0% | |
| ATTTGTAGCAGGAACTTGTG+GGG | - | chr3.3:86297427-86297446 | None:intergenic | 40.0% | |
| CATGACCAAGATCATGATCA+TGG | + | chr3.3:86297300-86297319 | MS.gene42688:CDS | 40.0% | |
| CATGATCATGATCTTGGTCA+TGG | - | chr3.3:86297302-86297321 | None:intergenic | 40.0% | |
| CATTTGTAGCAGGAACTTGT+GGG | - | chr3.3:86297428-86297447 | None:intergenic | 40.0% | |
| GAGTCTGCAGAACATATTGA+TGG | - | chr3.3:86298211-86298230 | None:intergenic | 40.0% | |
| GATGAAGCAAGAGAAAGTCT+CGG | + | chr3.3:86298364-86298383 | MS.gene42688:CDS | 40.0% | |
| GATGGAGAAGAAAAGAGAAG+TGG | + | chr3.3:86297242-86297261 | MS.gene42688:CDS | 40.0% | |
| GGTAACAATAAGCATCAAGG+TGG | + | chr3.3:86297207-86297226 | MS.gene42688:CDS | 40.0% | |
| GTAATGCATCCATTCGATGT+TGG | + | chr3.3:86299400-86299419 | MS.gene42688:CDS | 40.0% | |
| GTGGTGGCAATTTCAAATGT+GGG | + | chr3.3:86297264-86297283 | MS.gene42688:CDS | 40.0% | |
| TCAACCCATGATCATGATCT+TGG | - | chr3.3:86297308-86297327 | None:intergenic | 40.0% | |
| TCATTTGTAGCAGGAACTTG+TGG | - | chr3.3:86297429-86297448 | None:intergenic | 40.0% | |
| TCGGAAAAGTGAACTAGTGA+TGG | + | chr3.3:86299978-86299997 | MS.gene42688:CDS | 40.0% | |
| TTCATGTTTGTGTGTGTCGT+GGG | + | chr3.3:86297747-86297766 | MS.gene42688:CDS | 40.0% | |
| TTCGGGAGTTCAACTGTTAA+AGG | + | chr3.3:86298299-86298318 | MS.gene42688:CDS | 40.0% | |
| ! | ACTCTTGTTTCCCTTCTCAT+TGG | + | chr3.3:86298089-86298108 | MS.gene42688:CDS | 40.0% |
| ! | ATGTGTTGTAGATGGTGTTG+AGG | + | chr3.3:86299429-86299448 | MS.gene42688:CDS | 40.0% |
| ! | CAGCTGTTACTTCACCTTAT+AGG | + | chr3.3:86297583-86297602 | MS.gene42688:CDS | 40.0% |
| ! | GGAGAAGGGCATATACATTT+AGG | - | chr3.3:86298875-86298894 | None:intergenic | 40.0% |
| ! | TATCTGAGATGAACACCTTG+TGG | - | chr3.3:86300051-86300070 | None:intergenic | 40.0% |
| ! | TCCTTTTGTATTTCCCCTAC+TGG | + | chr3.3:86298997-86299016 | MS.gene42688:CDS | 40.0% |
| ! | TCTTAGGAGAGTTTTTCTCG+TGG | - | chr3.3:86297460-86297479 | None:intergenic | 40.0% |
| !! | GATGCCATTAAAGGTGTTCT+AGG | - | chr3.3:86297621-86297640 | None:intergenic | 40.0% |
| !!! | GACACTGTTGCTATCGATTT+TGG | + | chr3.3:86298133-86298152 | MS.gene42688:CDS | 40.0% |
| !!! | GTATTGGCCGTTTTAGTTTC+GGG | + | chr3.3:86298282-86298301 | MS.gene42688:CDS | 40.0% |
| AATTAGCCCTGTATCTGCCT+GGG | - | chr3.3:86299023-86299042 | None:intergenic | 45.0% | |
| ACACCTTTAATGGCATCTCC+AGG | + | chr3.3:86297624-86297643 | MS.gene42688:CDS | 45.0% | |
| ACGACACCAGCAGAGAAAAT+TGG | + | chr3.3:86299679-86299698 | MS.gene42688:CDS | 45.0% | |
| ACTGTGCTTCTCCTGAGATA+AGG | + | chr3.3:86297379-86297398 | MS.gene42688:CDS | 45.0% | |
| AGATACAGCCTTCTTCCACA+AGG | + | chr3.3:86300033-86300052 | MS.gene42688:CDS | 45.0% | |
| AGCGATCTAAATTAGCCGCA+AGG | + | chr3.3:86298045-86298064 | MS.gene42688:CDS | 45.0% | |
| AGTTTGGGGAGAAGGTGAAT+CGG | + | chr3.3:86299959-86299978 | MS.gene42688:CDS | 45.0% | |
| ATGGAAGAGGCTGGGAAAAT+CGG | + | chr3.3:86298248-86298267 | MS.gene42688:CDS | 45.0% | |
| CTAGTACTAGCTGTGATGAG+AGG | - | chr3.3:86299321-86299340 | None:intergenic | 45.0% | |
| CTCATCACAGCTAGTACTAG+CGG | + | chr3.3:86299321-86299340 | MS.gene42688:CDS | 45.0% | |
| CTGGCATCCTAATTTCAGCT+TGG | + | chr3.3:86299864-86299883 | MS.gene42688:CDS | 45.0% | |
| CTTTAGCAGATTGGGTGGTA+AGG | + | chr3.3:86299053-86299072 | MS.gene42688:intron | 45.0% | |
| CTTTCAAGAGTTTGGGGAGA+AGG | + | chr3.3:86299951-86299970 | MS.gene42688:CDS | 45.0% | |
| GAACCTGGAGATGCCATTAA+AGG | - | chr3.3:86297630-86297649 | None:intergenic | 45.0% | |
| GAAGAAAAGAGAAGTGGTGG+TGG | + | chr3.3:86297248-86297267 | MS.gene42688:CDS | 45.0% | |
| GATGAACACCTTGTGGAAGA+AGG | - | chr3.3:86300044-86300063 | None:intergenic | 45.0% | |
| GCATAAGAGACTAGCGACTA+AGG | + | chr3.3:86297710-86297729 | MS.gene42688:CDS | 45.0% | |
| GCCAGTAGGGGAAATACAAA+AGG | - | chr3.3:86299001-86299020 | None:intergenic | 45.0% | |
| GGAGAAGAAAAGAGAAGTGG+TGG | + | chr3.3:86297245-86297264 | MS.gene42688:CDS | 45.0% | |
| GGGAGTTCAACTGTTAAAGG+TGG | + | chr3.3:86298302-86298321 | MS.gene42688:CDS | 45.0% | |
| GTTCATGTTTGTGTGTGTCG+TGG | + | chr3.3:86297746-86297765 | MS.gene42688:CDS | 45.0% | |
| TAAAGGTGGCACAGAGAAAG+AGG | + | chr3.3:86298316-86298335 | MS.gene42688:CDS | 45.0% | |
| TAACAGCTGAGGAACTGAGA+AGG | + | chr3.3:86297787-86297806 | MS.gene42688:CDS | 45.0% | |
| TAATTAGCCCTGTATCTGCC+TGG | - | chr3.3:86299024-86299043 | None:intergenic | 45.0% | |
| TAGTGGTGAGCATAGTAGTG+TGG | + | chr3.3:86299254-86299273 | MS.gene42688:CDS | 45.0% | |
| TATGTTCTGCAGACTCTCTC+CGG | + | chr3.3:86298215-86298234 | MS.gene42688:CDS | 45.0% | |
| TCATCACAGCTAGTACTAGC+GGG | + | chr3.3:86299322-86299341 | MS.gene42688:CDS | 45.0% | |
| TTGCGGCTAATTTAGATCGC+TGG | - | chr3.3:86298046-86298065 | None:intergenic | 45.0% | |
| TTTGTAGCAGGAACTTGTGG+GGG | - | chr3.3:86297426-86297445 | None:intergenic | 45.0% | |
| ! | AGTCGCTAGTCTCTTATGCT+GGG | - | chr3.3:86297709-86297728 | None:intergenic | 45.0% |
| ! | AGTGCTCCAATTTTCTCTGC+TGG | - | chr3.3:86299688-86299707 | None:intergenic | 45.0% |
| ! | GAACTTGTGGGGGTGTATTT+GGG | - | chr3.3:86297416-86297435 | None:intergenic | 45.0% |
| ! | GCTAATTGGTTTAGTGGCGA+GGG | - | chr3.3:86299605-86299624 | None:intergenic | 45.0% |
| ! | GGAGAGTTTTTCTCGTGGTA+AGG | - | chr3.3:86297455-86297474 | None:intergenic | 45.0% |
| ! | GGTGGTGGCAATTTCAAATG+TGG | + | chr3.3:86297263-86297282 | MS.gene42688:CDS | 45.0% |
| ! | TAGTCGCTAGTCTCTTATGC+TGG | - | chr3.3:86297710-86297729 | None:intergenic | 45.0% |
| ! | TGCTAATTGGTTTAGTGGCG+AGG | - | chr3.3:86299606-86299625 | None:intergenic | 45.0% |
| ! | TTTGGAGTTTAGGGCTTTGG+AGG | + | chr3.3:86297817-86297836 | MS.gene42688:CDS | 45.0% |
| !! | AGCTGTTTTCGTGTCGCATA+AGG | - | chr3.3:86299197-86299216 | None:intergenic | 45.0% |
| !! | CAAAATAATAAAAATAAATT+TGG | - | chr3.3:86299468-86299487 | None:intergenic | 5.0% |
| ATGTTCTGCAGACTCTCTCC+GGG | + | chr3.3:86298216-86298235 | MS.gene42688:CDS | 50.0% | |
| CATCACAGCTAGTACTAGCG+GGG | + | chr3.3:86299323-86299342 | MS.gene42688:CDS | 50.0% | |
| CATCGATCGCCAACATCGAA+TGG | - | chr3.3:86299412-86299431 | None:intergenic | 50.0% | |
| CGGAGAGGAATCCACAATAC+TGG | + | chr3.3:86299845-86299864 | MS.gene42688:CDS | 50.0% | |
| CTCCACTAATGGAAGAGGCT+GGG | + | chr3.3:86298240-86298259 | MS.gene42688:CDS | 50.0% | |
| CTTGGGGTGAACCTTATCTC+AGG | - | chr3.3:86297393-86297412 | None:intergenic | 50.0% | |
| GAGGTGGTGTATGCTTGTGA+TGG | + | chr3.3:86297836-86297855 | MS.gene42688:CDS | 50.0% | |
| GCATCTCCAGGTTCTTCTTC+TGG | + | chr3.3:86297636-86297655 | MS.gene42688:CDS | 50.0% | |
| GGACACATTGCTTCAACCCA+TGG | - | chr3.3:86297962-86297981 | None:intergenic | 50.0% | |
| GGCGATCGATGTGTTGTAGA+TGG | + | chr3.3:86299421-86299440 | MS.gene42688:CDS | 50.0% | |
| GTACTAGCGGGGTTCATGTT+TGG | + | chr3.3:86299334-86299353 | MS.gene42688:CDS | 50.0% | |
| GTGTGTCGTGGGTATCTTGT+TGG | + | chr3.3:86297758-86297777 | MS.gene42688:CDS | 50.0% | |
| GTTGGCTAGCATAACAGCTG+AGG | + | chr3.3:86297776-86297795 | MS.gene42688:CDS | 50.0% | |
| TCCAGGTTCTTCTTCTGGTG+AGG | + | chr3.3:86297641-86297660 | MS.gene42688:CDS | 50.0% | |
| TCCTCACCAGAAGAAGAACC+TGG | - | chr3.3:86297645-86297664 | None:intergenic | 50.0% | |
| TGTGACAGGGGTCTTAGTAG+TGG | + | chr3.3:86299237-86299256 | MS.gene42688:CDS | 50.0% | |
| TTCCCAGCCTCTTCCATTAG+TGG | - | chr3.3:86298245-86298264 | None:intergenic | 50.0% | |
| ! | GGAACTTGTGGGGGTGTATT+TGG | - | chr3.3:86297417-86297436 | None:intergenic | 50.0% |
| ! | GGCGTGGACCATGAAGATTT+TGG | + | chr3.3:86298385-86298404 | MS.gene42688:CDS | 50.0% |
| ! | TGGGTTGAAGCAATGTGTCC+AGG | + | chr3.3:86297962-86297981 | MS.gene42688:CDS | 50.0% |
| !! | AGACGGACTGCTAGAGCAAA+TGG | + | chr3.3:86298717-86298736 | MS.gene42688:intron | 50.0% |
| AGCAAGAGAAAGTCTCGGCG+TGG | + | chr3.3:86298369-86298388 | MS.gene42688:CDS | 55.0% | |
| CCAGCCTCTTCCATTAGTGG+AGG | - | chr3.3:86298242-86298261 | None:intergenic | 55.0% | |
| CCTCCACTAATGGAAGAGGC+TGG | + | chr3.3:86298239-86298258 | MS.gene42688:CDS | 55.0% | |
| CTCTTCCATTAGTGGAGGCC+CGG | - | chr3.3:86298237-86298256 | None:intergenic | 55.0% | |
| TACTGGCCCAGGCAGATACA+GGG | + | chr3.3:86299014-86299033 | MS.gene42688:CDS | 55.0% | |
| TGTATCTGCCTGGGCCAGTA+GGG | - | chr3.3:86299014-86299033 | None:intergenic | 55.0% | |
| TGTATTTCCCCTACTGGCCC+AGG | + | chr3.3:86299003-86299022 | MS.gene42688:CDS | 55.0% | |
| TTAGTGGCGAGGGCAGAGTT+TGG | - | chr3.3:86299595-86299614 | None:intergenic | 55.0% | |
| ! | GTGGGGGTGTATTTGGGCTT+GGG | - | chr3.3:86297410-86297429 | None:intergenic | 55.0% |
| ! | TGGGGGTGTATTTGGGCTTG+GGG | - | chr3.3:86297409-86297428 | None:intergenic | 55.0% |
| ! | TGTGGGGGTGTATTTGGGCT+TGG | - | chr3.3:86297411-86297430 | None:intergenic | 55.0% |
| !! | GGAGTTTAGGGCTTTGGAGG+TGG | + | chr3.3:86297820-86297839 | MS.gene42688:CDS | 55.0% |
| CGGGCCTCCACTAATGGAAG+AGG | + | chr3.3:86298235-86298254 | MS.gene42688:CDS | 60.0% | |
| CTACTGGCCCAGGCAGATAC+AGG | + | chr3.3:86299013-86299032 | MS.gene42688:CDS | 60.0% | |
| CTGTATCTGCCTGGGCCAGT+AGG | - | chr3.3:86299015-86299034 | None:intergenic | 60.0% | |
| GTATCTGCCTGGGCCAGTAG+GGG | - | chr3.3:86299013-86299032 | None:intergenic | 60.0% | |
| TCTCTCCGGGCCTCCACTAA+TGG | + | chr3.3:86298229-86298248 | MS.gene42688:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 86297201 | 86300101 | 86297201 | ID=MS.gene42688 |
| chr3.3 | mRNA | 86297201 | 86300101 | 86297201 | ID=MS.gene42688.t1;Parent=MS.gene42688 |
| chr3.3 | exon | 86297201 | 86298573 | 86297201 | ID=MS.gene42688.t1.exon1;Parent=MS.gene42688.t1 |
| chr3.3 | CDS | 86297201 | 86298573 | 86297201 | ID=cds.MS.gene42688.t1;Parent=MS.gene42688.t1 |
| chr3.3 | exon | 86298949 | 86299069 | 86298949 | ID=MS.gene42688.t1.exon2;Parent=MS.gene42688.t1 |
| chr3.3 | CDS | 86298949 | 86299069 | 86298949 | ID=cds.MS.gene42688.t1;Parent=MS.gene42688.t1 |
| chr3.3 | exon | 86299157 | 86299450 | 86299157 | ID=MS.gene42688.t1.exon3;Parent=MS.gene42688.t1 |
| chr3.3 | CDS | 86299157 | 86299450 | 86299157 | ID=cds.MS.gene42688.t1;Parent=MS.gene42688.t1 |
| chr3.3 | exon | 86299523 | 86299725 | 86299523 | ID=MS.gene42688.t1.exon4;Parent=MS.gene42688.t1 |
| chr3.3 | CDS | 86299523 | 86299725 | 86299523 | ID=cds.MS.gene42688.t1;Parent=MS.gene42688.t1 |
| chr3.3 | exon | 86299840 | 86300101 | 86299840 | ID=MS.gene42688.t1.exon5;Parent=MS.gene42688.t1 |
| chr3.3 | CDS | 86299840 | 86300101 | 86299840 | ID=cds.MS.gene42688.t1;Parent=MS.gene42688.t1 |
| Gene Sequence |
| Protein sequence |
