Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42622.t1 | XP_003603197.1 | 96.4 | 772 | 26 | 1 | 1 | 770 | 1 | 772 | 0.00E+00 | 1431 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42622.t1 | Q9LYG9 | 56.0 | 720 | 290 | 10 | 45 | 759 | 33 | 730 | 1.2e-207 | 724.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42622.t1 | G7J8E1 | 96.4 | 772 | 26 | 1 | 1 | 770 | 1 | 772 | 0.0e+00 | 1431.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42622 | MS.gene014978 | PPI |
| MS.gene32770 | MS.gene42622 | PPI |
| MS.gene42622 | MS.gene42688 | PPI |
| MS.gene32773 | MS.gene42622 | PPI |
| MS.gene42622 | MS.gene74110 | PPI |
| MS.gene42622 | MS.gene014973 | PPI |
| MS.gene42622 | MS.gene97525 | PPI |
| MS.gene42622 | MS.gene42620 | PPI |
| MS.gene42622 | MS.gene062410 | PPI |
| MS.gene42681 | MS.gene42622 | PPI |
| MS.gene42622 | MS.gene014981 | PPI |
| MS.gene32764 | MS.gene42622 | PPI |
| MS.gene42622 | MS.gene42628 | PPI |
| MS.gene42622 | MS.gene42686 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42622.t1 | MTR_3g104940 | 96.891 | 772 | 22 | 1 | 1 | 770 | 1 | 772 | 0.0 | 1543 |
| MS.gene42622.t1 | MTR_3g104990 | 87.047 | 772 | 91 | 3 | 2 | 770 | 6 | 771 | 0.0 | 1347 |
| MS.gene42622.t1 | MTR_3g104920 | 78.941 | 774 | 134 | 5 | 1 | 770 | 1 | 749 | 0.0 | 1222 |
| MS.gene42622.t1 | MTR_3g104920 | 78.975 | 761 | 132 | 4 | 14 | 770 | 1 | 737 | 0.0 | 1205 |
| MS.gene42622.t1 | MTR_2g041220 | 49.677 | 775 | 330 | 16 | 11 | 759 | 5 | 745 | 0.0 | 692 |
| MS.gene42622.t1 | MTR_8g071250 | 46.114 | 579 | 283 | 11 | 197 | 762 | 129 | 691 | 7.96e-167 | 498 |
| MS.gene42622.t1 | MTR_1g113850 | 40.118 | 678 | 342 | 10 | 142 | 769 | 254 | 917 | 4.83e-157 | 480 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42622.t1 | AT5G12080 | 58.194 | 720 | 274 | 10 | 45 | 759 | 33 | 730 | 0.0 | 828 |
| MS.gene42622.t1 | AT5G12080 | 58.194 | 720 | 274 | 10 | 45 | 759 | 33 | 730 | 0.0 | 828 |
| MS.gene42622.t1 | AT5G12080 | 58.194 | 720 | 274 | 10 | 45 | 759 | 33 | 730 | 0.0 | 828 |
| MS.gene42622.t1 | AT5G19520 | 54.031 | 707 | 306 | 8 | 54 | 759 | 50 | 738 | 0.0 | 759 |
| MS.gene42622.t1 | AT5G19520 | 54.031 | 707 | 306 | 8 | 54 | 759 | 50 | 738 | 0.0 | 759 |
| MS.gene42622.t1 | AT3G14810 | 40.793 | 706 | 340 | 12 | 111 | 767 | 188 | 864 | 5.11e-156 | 476 |
| MS.gene42622.t1 | AT2G17010 | 40.984 | 610 | 312 | 8 | 190 | 762 | 292 | 890 | 3.15e-155 | 475 |
| MS.gene42622.t1 | AT1G53470 | 39.970 | 668 | 348 | 11 | 142 | 762 | 199 | 860 | 1.07e-153 | 470 |
| MS.gene42622.t1 | AT1G78610 | 41.463 | 656 | 330 | 9 | 145 | 762 | 193 | 832 | 7.88e-153 | 467 |
| MS.gene42622.t1 | AT2G17000 | 40.894 | 604 | 321 | 9 | 190 | 762 | 225 | 823 | 9.85e-143 | 441 |
| MS.gene42622.t1 | AT2G17000 | 40.894 | 604 | 321 | 9 | 190 | 762 | 225 | 823 | 1.24e-142 | 441 |
| MS.gene42622.t1 | AT3G14810 | 38.244 | 706 | 323 | 13 | 111 | 767 | 188 | 829 | 3.17e-136 | 424 |
| MS.gene42622.t1 | AT2G17010 | 35.246 | 366 | 189 | 8 | 190 | 518 | 292 | 646 | 1.22e-61 | 220 |
Find 158 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTACCTTGTCAACCATATT+TGG | 0.086878 | 3.4:-91890529 | None:intergenic |
| CAATATTGGCATCCTAATTT+TGG | 0.137793 | 3.4:+91890735 | MS.gene42622:CDS |
| GGACAGAGCTTTGGAGTTTA+AGG | 0.149958 | 3.4:+91888756 | MS.gene42622:CDS |
| GCATTTGCAGCAGGAGATTT+TGG | 0.152219 | 3.4:-91888305 | None:intergenic |
| CCAATCTGCTAAAGACTTTC+TGG | 0.165787 | 3.4:-91889930 | None:intergenic |
| AAGTAACATTCTCTTCTAAA+AGG | 0.198026 | 3.4:-91888418 | None:intergenic |
| TATCTGTTAGTTCACCTTAT+AGG | 0.222459 | 3.4:+91888462 | MS.gene42622:CDS |
| ACGACACCAGCAGAGAAAAT+TGG | 0.226737 | 3.4:+91890568 | MS.gene42622:CDS |
| CTCATGGACTATGAAGATTT+TGG | 0.238303 | 3.4:+91889333 | MS.gene42622:CDS |
| TCTCTCTGGGCCTCCACTTA+TGG | 0.256047 | 3.4:+91889177 | MS.gene42622:CDS |
| ACTCCGTCGTTTCATGATTA+AGG | 0.256189 | 3.4:+91889853 | MS.gene42622:CDS |
| ACAATGAACTTTCAAGAGTT+TGG | 0.262365 | 3.4:+91890819 | MS.gene42622:CDS |
| CTAGGGATGAACCTTATTTC+AGG | 0.265146 | 3.4:-91888269 | None:intergenic |
| TTGTTAAATGCGTTCCTATA+AGG | 0.266324 | 3.4:-91888476 | None:intergenic |
| CAAAATCTTTGCGGCCAGTT+TGG | 0.274734 | 3.4:-91888999 | None:intergenic |
| TCAGGGGAAGCACAGTTTAA+AGG | 0.276027 | 3.4:-91888251 | None:intergenic |
| TCCTTTGGTATTTCCCCTAT+TGG | 0.277648 | 3.4:+91889883 | MS.gene42622:CDS |
| TTGTTCACCAAATCTTGATT+TGG | 0.289978 | 3.4:-91888375 | None:intergenic |
| GTACTCGCGGCTTTCATGTT+TGG | 0.292967 | 3.4:+91890221 | MS.gene42622:CDS |
| GACGACGTTGCTAAAGGTTT+TGG | 0.297117 | 3.4:+91889081 | MS.gene42622:CDS |
| TTCAGGAGTACTACCGTTAA+TGG | 0.300594 | 3.4:+91889247 | MS.gene42622:CDS |
| TACTCGCGGCTTTCATGTTT+GGG | 0.302794 | 3.4:+91890222 | MS.gene42622:CDS |
| AGCTTTGGAGTTTAAGGCTT+TGG | 0.308174 | 3.4:+91888762 | MS.gene42622:CDS |
| ATGGCATCTCCAGGTCCTGC+TGG | 0.309195 | 3.4:+91888584 | MS.gene42622:CDS |
| TAGTACTCCTGAAACTAAAA+TGG | 0.314981 | 3.4:-91889237 | None:intergenic |
| TCTAAAAGGGTTTCATCAAT+AGG | 0.317837 | 3.4:-91888404 | None:intergenic |
| TCTCATTCGCTTGCCTCTAC+TGG | 0.318021 | 3.4:-91888645 | None:intergenic |
| TCTCCACTCACATTTGAAAT+AGG | 0.334324 | 3.4:-91888158 | None:intergenic |
| ACTGTGCTTCCCCTGAAATA+AGG | 0.336839 | 3.4:+91888258 | MS.gene42622:CDS |
| TGGAGAGGAATCCACAATAT+TGG | 0.337472 | 3.4:+91890721 | MS.gene42622:CDS |
| CGACACCAGCAGAGAAAATT+GGG | 0.337647 | 3.4:+91890569 | MS.gene42622:CDS |
| CACTCCTAGAACACCTTTGA+TGG | 0.340051 | 3.4:+91888565 | MS.gene42622:CDS |
| CTACCTTGTCAACCATATTT+GGG | 0.340360 | 3.4:-91890528 | None:intergenic |
| TTCACTACCAAGCCAAAATT+AGG | 0.347299 | 3.4:-91890747 | None:intergenic |
| ACTCTTGTTTCCCTTCTCAT+TGG | 0.349071 | 3.4:+91889037 | MS.gene42622:CDS |
| TTATTACAGAAGCCCAAATA+TGG | 0.356757 | 3.4:+91890516 | MS.gene42622:CDS |
| TGTTCACCAAATCTTGATTT+GGG | 0.359204 | 3.4:-91888374 | None:intergenic |
| ACCGTTCCAGACTTGTTATT+CGG | 0.360429 | 3.4:-91888512 | None:intergenic |
| AAAGAAAGACATTATTGATA+TGG | 0.362900 | 3.4:+91889276 | MS.gene42622:CDS |
| TGTCTCTGACTGTGCCAATA+GGG | 0.364319 | 3.4:-91889897 | None:intergenic |
| AACATTCCTGAAAATGTAAT+AGG | 0.365241 | 3.4:-91889479 | None:intergenic |
| TCTAAGCCCAAATCAAGATT+TGG | 0.370555 | 3.4:+91888368 | MS.gene42622:CDS |
| ATCTTGATGAAATCATTTAC+AGG | 0.371328 | 3.4:+91888612 | MS.gene42622:CDS |
| TTTCTTTGTGCCGCCATTAA+CGG | 0.374402 | 3.4:-91889260 | None:intergenic |
| CAGAAAGTCTTTAGCAGATT+GGG | 0.374694 | 3.4:+91889931 | MS.gene42622:CDS |
| CCAGAAAGTCTTTAGCAGAT+TGG | 0.385016 | 3.4:+91889930 | MS.gene42622:CDS |
| AGTAGTGTGGCTTCTTCTAA+TGG | 0.385108 | 3.4:+91890154 | MS.gene42622:CDS |
| GATGCCATCAAAGGTGTTCT+AGG | 0.387245 | 3.4:-91888569 | None:intergenic |
| TCAACTCATGATCATGATCT+TGG | 0.387525 | 3.4:-91888187 | None:intergenic |
| TATGTTCTACAGACTCTCTC+TGG | 0.390416 | 3.4:+91889163 | MS.gene42622:CDS |
| CTGTCTCTGACTGTGCCAAT+AGG | 0.392993 | 3.4:-91889898 | None:intergenic |
| AACTGAGAAGGACAGAGCTT+TGG | 0.400147 | 3.4:+91888747 | MS.gene42622:CDS |
| CACCAGTTCACTTCTCCGCT+TGG | 0.404807 | 3.4:-91890850 | None:intergenic |
| TAGCTTGTTGGCTAGTTTAA+CGG | 0.413430 | 3.4:+91888718 | MS.gene42622:CDS |
| CTACTATGGTCACCACTACT+AGG | 0.414873 | 3.4:-91890136 | None:intergenic |
| TTAGTGGCGAGGACAGAGTT+TGG | 0.415287 | 3.4:-91890481 | None:intergenic |
| TGCGGCCAGTTTGGATCGAT+GGG | 0.415753 | 3.4:-91888990 | None:intergenic |
| ATCTCCAGGTCCTGCTGGGG+AGG | 0.420002 | 3.4:+91888589 | MS.gene42622:CDS |
| GATTAAGGAAGAAGTTCCTT+TGG | 0.428446 | 3.4:+91889868 | MS.gene42622:CDS |
| AGTAACATTCTCTTCTAAAA+GGG | 0.432358 | 3.4:-91888417 | None:intergenic |
| TTGCGGCCAGTTTGGATCGA+TGG | 0.433487 | 3.4:-91888991 | None:intergenic |
| CACCGATCGCCAACATCAAA+CGG | 0.435576 | 3.4:-91890296 | None:intergenic |
| GTGCATTGCGGGTAGCTTGT+TGG | 0.437117 | 3.4:+91888706 | MS.gene42622:CDS |
| TGGCATCTCCAGGTCCTGCT+GGG | 0.444037 | 3.4:+91888585 | MS.gene42622:CDS |
| AGGGTTTCATCAATAGGATA+AGG | 0.446597 | 3.4:-91888398 | None:intergenic |
| TCAGTTTGGTTCTCCTCACA+TGG | 0.448034 | 3.4:+91888945 | MS.gene42622:CDS |
| CATTTGAGATAATTTGCATC+AGG | 0.448614 | 3.4:-91890954 | None:intergenic |
| AAACTAAAATGGCCAATACT+TGG | 0.448771 | 3.4:-91889226 | None:intergenic |
| GGTTGACAAGGTAGAGTTCT+CGG | 0.449379 | 3.4:+91890537 | MS.gene42622:CDS |
| TATATCATTCAAAATCTTTG+CGG | 0.449874 | 3.4:-91889008 | None:intergenic |
| AAGAATGTGTATGAACCATT+TGG | 0.454547 | 3.4:-91888831 | None:intergenic |
| ATAATTGCTGATCGGTTTAG+TGG | 0.456938 | 3.4:-91890497 | None:intergenic |
| ATCAAGTGAATTAGAGATTG+TGG | 0.457488 | 3.4:-91889383 | None:intergenic |
| AAATGTAAATAATATTAAGA+TGG | 0.457937 | 3.4:+91890779 | MS.gene42622:CDS |
| TTTGGAGTTTAAGGCTTTGG+AGG | 0.458091 | 3.4:+91888765 | MS.gene42622:CDS |
| GGCGATCGGTGTGTTATAGA+TGG | 0.461972 | 3.4:+91890308 | MS.gene42622:CDS |
| TAGAAGAAGCCACACTACTA+TGG | 0.462238 | 3.4:-91890150 | None:intergenic |
| CAATTGAACAAGCTTGTGAC+AGG | 0.463263 | 3.4:+91890110 | MS.gene42622:CDS |
| GAGTCTGTAGAACATATTGA+TGG | 0.464278 | 3.4:-91889156 | None:intergenic |
| TTCTCAGCCTCTTCCATAAG+TGG | 0.477268 | 3.4:-91889190 | None:intergenic |
| CTATTGGCACAGTCAGAGAC+AGG | 0.477390 | 3.4:+91889899 | MS.gene42622:CDS |
| TGGGGCCCATCGATCCAAAC+TGG | 0.477880 | 3.4:+91888985 | MS.gene42622:CDS |
| AATGTAAATAATATTAAGAT+GGG | 0.490222 | 3.4:+91890780 | MS.gene42622:CDS |
| AGATCCTCCCCAGCAGGACC+TGG | 0.491696 | 3.4:-91888593 | None:intergenic |
| GTGGCATGTTAGTTACCAAA+TGG | 0.493145 | 3.4:+91888816 | MS.gene42622:CDS |
| CATTCGCCGAATAACAAGTC+TGG | 0.493585 | 3.4:+91888506 | MS.gene42622:CDS |
| TATATTCTTACTGGCAGCTA+GGG | 0.495152 | 3.4:-91889510 | None:intergenic |
| GACCAAGCGGAGAAGTGAAC+TGG | 0.498225 | 3.4:+91890848 | MS.gene42622:CDS |
| GCGGAGAAGTGAACTGGTGA+TGG | 0.503744 | 3.4:+91890854 | MS.gene42622:CDS |
| CATTACAAACACGAAAATGA+TGG | 0.506172 | 3.4:-91890270 | None:intergenic |
| TATAAAGACGACGTTGCTAA+AGG | 0.506408 | 3.4:+91889075 | MS.gene42622:CDS |
| TGGGCCTCCACTTATGGAAG+AGG | 0.508208 | 3.4:+91889183 | MS.gene42622:CDS |
| TGGATTGAAGAAATGTGTCC+AGG | 0.509520 | 3.4:+91888910 | MS.gene42622:CDS |
| ACAAGTCTGGAACGGTGAAT+CGG | 0.520222 | 3.4:+91888519 | MS.gene42622:CDS |
| ATATATTCTTACTGGCAGCT+AGG | 0.521997 | 3.4:-91889511 | None:intergenic |
| GGACACATTTCTTCAATCCA+TGG | 0.523292 | 3.4:-91888907 | None:intergenic |
| ATCGGTGGAACTCCAAGTAT+TGG | 0.525832 | 3.4:+91889214 | MS.gene42622:CDS |
| TAGGGATGAACCTTATTTCA+GGG | 0.528282 | 3.4:-91888268 | None:intergenic |
| GGCATCTCCAGGTCCTGCTG+GGG | 0.531190 | 3.4:+91888586 | MS.gene42622:CDS |
| TCATCAAGATCCTCCCCAGC+AGG | 0.531246 | 3.4:-91888599 | None:intergenic |
| AAATTAGGATGCCAATATTG+TGG | 0.532913 | 3.4:-91890732 | None:intergenic |
| ACACCTTTGATGGCATCTCC+AGG | 0.537728 | 3.4:+91888575 | MS.gene42622:CDS |
| TAAAGAAATTACTAATGAGA+TGG | 0.537985 | 3.4:+91889441 | MS.gene42622:CDS |
| CTTCTGTAATAATTGCTGAT+CGG | 0.538298 | 3.4:-91890505 | None:intergenic |
| AGTAATAAGCATCAAGGTGG+TGG | 0.539496 | 3.4:+91888095 | MS.gene42622:CDS |
| GATGAACACCTTGTGGAAGA+AGG | 0.541949 | 3.4:-91890917 | None:intergenic |
| TGCTGATCGGTTTAGTGGCG+AGG | 0.547403 | 3.4:-91890492 | None:intergenic |
| AGCAAGAGAAAGTTTCCTCA+TGG | 0.550174 | 3.4:+91889317 | MS.gene42622:CDS |
| AACTGATCCAAATGAAAACC+TGG | 0.550631 | 3.4:-91888928 | None:intergenic |
| GTCTCTGACTGTGCCAATAG+GGG | 0.557300 | 3.4:-91889896 | None:intergenic |
| CATGATCATGATCTTGGCCA+TGG | 0.567528 | 3.4:-91888181 | None:intergenic |
| TAGATGCAGTGATGAATTCA+AGG | 0.569731 | 3.4:+91889356 | MS.gene42622:CDS |
| GTAATGCATCCGTTTGATGT+TGG | 0.570146 | 3.4:+91890287 | MS.gene42622:CDS |
| GAGGTATTGTATGCTTGTGA+TGG | 0.573031 | 3.4:+91888784 | MS.gene42622:CDS |
| GTTCCTATTTCAAATGTGAG+TGG | 0.582514 | 3.4:+91888155 | MS.gene42622:CDS |
| ATGGAAGAGGCTGAGAAGAT+CGG | 0.582758 | 3.4:+91889196 | MS.gene42622:CDS |
| ATGGATAGTAATAAGCATCA+AGG | 0.586805 | 3.4:+91888089 | MS.gene42622:CDS |
| ATGTTCTACAGACTCTCTCT+GGG | 0.597339 | 3.4:+91889164 | MS.gene42622:CDS |
| CGAGTACTAGCTGCGATGAG+AGG | 0.597969 | 3.4:-91890205 | None:intergenic |
| CAGTTTGGTTCTCCTCACAT+GGG | 0.599014 | 3.4:+91888946 | MS.gene42622:CDS |
| GGACCTGGAGATGCCATCAA+AGG | 0.599028 | 3.4:-91888578 | None:intergenic |
| TGTGACAGGGGTCCTAGTAG+TGG | 0.600912 | 3.4:+91890124 | MS.gene42622:CDS |
| TGGTGGTGAAGTAAGCATGA+TGG | 0.601541 | 3.4:+91888112 | MS.gene42622:CDS |
| GATCAAAGAAAGATTTGACA+TGG | 0.605754 | 3.4:-91889114 | None:intergenic |
| GATGGAGAACAGAAGAGAAG+TGG | 0.605995 | 3.4:+91888130 | MS.gene42622:CDS |
| TTATCAAGAACGTAAAGCAC+TGG | 0.607748 | 3.4:+91890052 | MS.gene42622:CDS |
| ATCCGTTTGATGTTGGCGAT+CGG | 0.612203 | 3.4:+91890294 | MS.gene42622:CDS |
| TCAAAACTAGGTATTTGGAG+AGG | 0.616066 | 3.4:+91890706 | MS.gene42622:intron |
| TCAGCCTCTTCCATAAGTGG+AGG | 0.616144 | 3.4:-91889187 | None:intergenic |
| TGATTAAAAGCACCCATGTG+AGG | 0.618150 | 3.4:-91888958 | None:intergenic |
| CAAAATCTTCATAGTCCATG+AGG | 0.622948 | 3.4:-91889332 | None:intergenic |
| AATTGAACAAGCTTGTGACA+GGG | 0.626996 | 3.4:+91890111 | MS.gene42622:CDS |
| GGGGAAGCACAGTTTAAAGG+TGG | 0.629078 | 3.4:-91888248 | None:intergenic |
| AGGGATGAACCTTATTTCAG+GGG | 0.633053 | 3.4:-91888267 | None:intergenic |
| AAAGTCTTTAGCAGATTGGG+TGG | 0.633331 | 3.4:+91889934 | MS.gene42622:CDS |
| AGGAAAGTTGAATCCAGTAG+AGG | 0.633754 | 3.4:+91888632 | MS.gene42622:CDS |
| GCCAATAGGGGAAATACCAA+AGG | 0.640515 | 3.4:-91889884 | None:intergenic |
| GAAGAGGCTGAGAAGATCGG+TGG | 0.642995 | 3.4:+91889199 | MS.gene42622:CDS |
| AAGCCCAAATATGGTTGACA+AGG | 0.643250 | 3.4:+91890525 | MS.gene42622:CDS |
| CTTCCTTAATCATGAAACGA+CGG | 0.644475 | 3.4:-91889856 | None:intergenic |
| TCAAATGTGAGTGGAGACCA+TGG | 0.645578 | 3.4:+91888164 | MS.gene42622:CDS |
| ATTGAACAAGCTTGTGACAG+GGG | 0.650888 | 3.4:+91890112 | MS.gene42622:CDS |
| TAACGGTTGAGAAACTGAGA+AGG | 0.661480 | 3.4:+91888735 | MS.gene42622:CDS |
| AGGTGTTCATCTCAGACACA+TGG | 0.662617 | 3.4:+91890929 | MS.gene42622:CDS |
| CTCATCGCAGCTAGTACTCG+CGG | 0.664316 | 3.4:+91890208 | MS.gene42622:CDS |
| TGTCTGAGATGAACACCTTG+TGG | 0.664837 | 3.4:-91890924 | None:intergenic |
| GCCGAATAACAAGTCTGGAA+CGG | 0.665450 | 3.4:+91888511 | MS.gene42622:CDS |
| GTGTGTTATAGATGGTGTTG+AGG | 0.674889 | 3.4:+91890316 | MS.gene42622:CDS |
| AGGAGTACTACCGTTAATGG+CGG | 0.675857 | 3.4:+91889250 | MS.gene42622:CDS |
| TAGTGGTGACCATAGTAGTG+TGG | 0.677764 | 3.4:+91890141 | MS.gene42622:CDS |
| ATATTCTTACTGGCAGCTAG+GGG | 0.678029 | 3.4:-91889509 | None:intergenic |
| AGTTTGGAGAGAAGACCAAG+CGG | 0.683246 | 3.4:+91890835 | MS.gene42622:CDS |
| GGCGACTTTGTAGAGTAGCG+AGG | 0.692352 | 3.4:-91888227 | None:intergenic |
| GCGAATGAGACTAACAACAA+AGG | 0.698200 | 3.4:+91888658 | MS.gene42622:CDS |
| GATAGTAATAAGCATCAAGG+TGG | 0.703942 | 3.4:+91888092 | MS.gene42622:CDS |
| AGATACAGCCTTCTTCCACA+AGG | 0.708237 | 3.4:+91890909 | MS.gene42622:CDS |
| TATTGGCACAGTCAGAGACA+GGG | 0.708405 | 3.4:+91889900 | MS.gene42622:CDS |
| GACACCAGCAGAGAAAATTG+GGG | 0.731623 | 3.4:+91890570 | MS.gene42622:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGTAAATAATATTAAGA+TGG | + | chr3.4:91890779-91890798 | MS.gene42622:CDS | 10.0% |
| !! | AATGTAAATAATATTAAGAT+GGG | + | chr3.4:91890780-91890799 | MS.gene42622:CDS | 10.0% |
| !! | AAAATAACTTATAGCTTAAA+TGG | + | chr3.4:91889647-91889666 | MS.gene42622:intron | 15.0% |
| !! | TCAAACAACAAAATTAAATT+TGG | - | chr3.4:91890357-91890376 | None:intergenic | 15.0% |
| !!! | TTTATCTTCTTTTATAGATT+TGG | + | chr3.4:91889687-91889706 | MS.gene42622:intron | 15.0% |
| !! | AAAGAAAGACATTATTGATA+TGG | + | chr3.4:91889276-91889295 | MS.gene42622:CDS | 20.0% |
| !! | AAAGTTCTCTCATTATTAAT+AGG | + | chr3.4:91889813-91889832 | MS.gene42622:intron | 20.0% |
| !! | AAGTTCTCTCATTATTAATA+GGG | + | chr3.4:91889814-91889833 | MS.gene42622:intron | 20.0% |
| !! | AATAATGCATATATTCTTAC+TGG | - | chr3.4:91889522-91889541 | None:intergenic | 20.0% |
| !! | ACTGAAAAATACAAACATTA+TGG | - | chr3.4:91890025-91890044 | None:intergenic | 20.0% |
| !! | TAAAGAAATTACTAATGAGA+TGG | + | chr3.4:91889441-91889460 | MS.gene42622:CDS | 20.0% |
| !! | TATATCATTCAAAATCTTTG+CGG | - | chr3.4:91889011-91889030 | None:intergenic | 20.0% |
| !!! | AGATTTTGAATGATATAACA+TGG | + | chr3.4:91889014-91889033 | MS.gene42622:CDS | 20.0% |
| !!! | ATTAATGCCTTTTAATTATC+TGG | + | chr3.4:91890386-91890405 | MS.gene42622:intron | 20.0% |
| !!! | GCTATAAGTTATTTTCTATA+AGG | - | chr3.4:91889642-91889661 | None:intergenic | 20.0% |
| !!! | TCTTTTAAAAGATTTTCTTG+TGG | - | chr3.4:91888339-91888358 | None:intergenic | 20.0% |
| ! | AACATTCCTGAAAATGTAAT+AGG | - | chr3.4:91889482-91889501 | None:intergenic | 25.0% |
| ! | AAGTAACATTCTCTTCTAAA+AGG | - | chr3.4:91888421-91888440 | None:intergenic | 25.0% |
| ! | ATCTTGATGAAATCATTTAC+AGG | + | chr3.4:91888612-91888631 | MS.gene42622:CDS | 25.0% |
| !! | AGTAACATTCTCTTCTAAAA+GGG | - | chr3.4:91888420-91888439 | None:intergenic | 25.0% |
| !! | CTGAAATTTTATCCTCAATA+TGG | + | chr3.4:91890623-91890642 | MS.gene42622:intron | 25.0% |
| !! | TGTTTAGATTGACTTAATTG+AGG | + | chr3.4:91889576-91889595 | MS.gene42622:intron | 25.0% |
| !! | TTGAAATGAACTTTTTGTTG+AGG | + | chr3.4:91888864-91888883 | MS.gene42622:CDS | 25.0% |
| !!! | CTAATGTCTTTTTCAAAACT+AGG | + | chr3.4:91890694-91890713 | MS.gene42622:intron | 25.0% |
| !!! | CTTTTTCAAAACTAGGTATT+TGG | + | chr3.4:91890701-91890720 | MS.gene42622:intron | 25.0% |
| !!! | TGTTTGTATTTTTCAGTTGA+AGG | + | chr3.4:91890028-91890047 | MS.gene42622:intron | 25.0% |
| AAACTAAAATGGCCAATACT+TGG | - | chr3.4:91889229-91889248 | None:intergenic | 30.0% | |
| AAATTAGGATGCCAATATTG+TGG | - | chr3.4:91890735-91890754 | None:intergenic | 30.0% | |
| AAGAATGTGTATGAACCATT+TGG | - | chr3.4:91888834-91888853 | None:intergenic | 30.0% | |
| AATCATTTGTGAGACTGTTT+GGG | + | chr3.4:91889613-91889632 | MS.gene42622:intron | 30.0% | |
| ACAATGAACTTTCAAGAGTT+TGG | + | chr3.4:91890819-91890838 | MS.gene42622:CDS | 30.0% | |
| ATAGCTGCCAGATAATTAAA+AGG | - | chr3.4:91890396-91890415 | None:intergenic | 30.0% | |
| ATCAAGTGAATTAGAGATTG+TGG | - | chr3.4:91889386-91889405 | None:intergenic | 30.0% | |
| ATGGATAGTAATAAGCATCA+AGG | + | chr3.4:91888089-91888108 | MS.gene42622:CDS | 30.0% | |
| ATTTGTCAACATCATAACGA+AGG | + | chr3.4:91889981-91890000 | MS.gene42622:intron | 30.0% | |
| CACTGAAAGAAAAAGTAAAG+AGG | + | chr3.4:91890593-91890612 | MS.gene42622:CDS | 30.0% | |
| CATTACAAACACGAAAATGA+TGG | - | chr3.4:91890273-91890292 | None:intergenic | 30.0% | |
| CGAAGGATTGAAATTATCTT+TGG | + | chr3.4:91889998-91890017 | MS.gene42622:intron | 30.0% | |
| CTTCTGTAATAATTGCTGAT+CGG | - | chr3.4:91890508-91890527 | None:intergenic | 30.0% | |
| GATCAAAGAAAGATTTGACA+TGG | - | chr3.4:91889117-91889136 | None:intergenic | 30.0% | |
| TAATCATTTGTGAGACTGTT+TGG | + | chr3.4:91889612-91889631 | MS.gene42622:intron | 30.0% | |
| TAGTACTCCTGAAACTAAAA+TGG | - | chr3.4:91889240-91889259 | None:intergenic | 30.0% | |
| TATCTGTTAGTTCACCTTAT+AGG | + | chr3.4:91888462-91888481 | MS.gene42622:CDS | 30.0% | |
| TCTAAAAGGGTTTCATCAAT+AGG | - | chr3.4:91888407-91888426 | None:intergenic | 30.0% | |
| TGTTCACCAAATCTTGATTT+GGG | - | chr3.4:91888377-91888396 | None:intergenic | 30.0% | |
| TTATTACAGAAGCCCAAATA+TGG | + | chr3.4:91890516-91890535 | MS.gene42622:CDS | 30.0% | |
| TTGTTAAATGCGTTCCTATA+AGG | - | chr3.4:91888479-91888498 | None:intergenic | 30.0% | |
| TTGTTCACCAAATCTTGATT+TGG | - | chr3.4:91888378-91888397 | None:intergenic | 30.0% | |
| TTTAATTATCTGGCAGCTAT+TGG | + | chr3.4:91890396-91890415 | MS.gene42622:intron | 30.0% | |
| ! | ATAAGACTTGTTCCATATTG+AGG | - | chr3.4:91890638-91890657 | None:intergenic | 30.0% |
| ! | CAATATTGGCATCCTAATTT+TGG | + | chr3.4:91890735-91890754 | MS.gene42622:CDS | 30.0% |
| ! | CATTTGAGATAATTTGCATC+AGG | - | chr3.4:91890957-91890976 | None:intergenic | 30.0% |
| ! | TTAAGTTGTTTATCCAACCA+TGG | + | chr3.4:91889733-91889752 | MS.gene42622:intron | 30.0% |
| !!! | AAAGTGCTTTATTTTGTCCA+TGG | + | chr3.4:91888890-91888909 | MS.gene42622:CDS | 30.0% |
| AAATAAACATAGGCCATGGT+TGG | - | chr3.4:91889749-91889768 | None:intergenic | 35.0% | |
| AACTGATCCAAATGAAAACC+TGG | - | chr3.4:91888931-91888950 | None:intergenic | 35.0% | |
| AATTGAACAAGCTTGTGACA+GGG | + | chr3.4:91890111-91890130 | MS.gene42622:CDS | 35.0% | |
| ACAAAAATGCTCCAATGAGA+AGG | - | chr3.4:91889051-91889070 | None:intergenic | 35.0% | |
| AGATACCAAAACAAGGAGAA+GGG | - | chr3.4:91889773-91889792 | None:intergenic | 35.0% | |
| AGGGTTTCATCAATAGGATA+AGG | - | chr3.4:91888401-91888420 | None:intergenic | 35.0% | |
| ATATATTCTTACTGGCAGCT+AGG | - | chr3.4:91889514-91889533 | None:intergenic | 35.0% | |
| CAAAAATGCTCCAATGAGAA+GGG | - | chr3.4:91889050-91889069 | None:intergenic | 35.0% | |
| CAAAATCTTCATAGTCCATG+AGG | - | chr3.4:91889335-91889354 | None:intergenic | 35.0% | |
| CAGAAAGTCTTTAGCAGATT+GGG | + | chr3.4:91889931-91889950 | MS.gene42622:CDS | 35.0% | |
| CTACCTTGTCAACCATATTT+GGG | - | chr3.4:91890531-91890550 | None:intergenic | 35.0% | |
| CTTCCTTAATCATGAAACGA+CGG | - | chr3.4:91889859-91889878 | None:intergenic | 35.0% | |
| GAGTCTGTAGAACATATTGA+TGG | - | chr3.4:91889159-91889178 | None:intergenic | 35.0% | |
| GATAGTAATAAGCATCAAGG+TGG | + | chr3.4:91888092-91888111 | MS.gene42622:CDS | 35.0% | |
| GATTAAGGAAGAAGTTCCTT+TGG | + | chr3.4:91889868-91889887 | MS.gene42622:CDS | 35.0% | |
| GGAGAAGGGAAAATAAACAT+AGG | - | chr3.4:91889759-91889778 | None:intergenic | 35.0% | |
| GTTCCTATTTCAAATGTGAG+TGG | + | chr3.4:91888155-91888174 | MS.gene42622:CDS | 35.0% | |
| TAGATGCAGTGATGAATTCA+AGG | + | chr3.4:91889356-91889375 | MS.gene42622:CDS | 35.0% | |
| TATAAAGACGACGTTGCTAA+AGG | + | chr3.4:91889075-91889094 | MS.gene42622:CDS | 35.0% | |
| TATATTCTTACTGGCAGCTA+GGG | - | chr3.4:91889513-91889532 | None:intergenic | 35.0% | |
| TCAAAACTAGGTATTTGGAG+AGG | + | chr3.4:91890706-91890725 | MS.gene42622:intron | 35.0% | |
| TCAACTCATGATCATGATCT+TGG | - | chr3.4:91888190-91888209 | None:intergenic | 35.0% | |
| TCTAAGCCCAAATCAAGATT+TGG | + | chr3.4:91888368-91888387 | MS.gene42622:CDS | 35.0% | |
| TCTACCTTGTCAACCATATT+TGG | - | chr3.4:91890532-91890551 | None:intergenic | 35.0% | |
| TTATCAAGAACGTAAAGCAC+TGG | + | chr3.4:91890052-91890071 | MS.gene42622:CDS | 35.0% | |
| TTCACTACCAAGCCAAAATT+AGG | - | chr3.4:91890750-91890769 | None:intergenic | 35.0% | |
| ! | AATGTGTCCAGGTTTTCATT+TGG | + | chr3.4:91888921-91888940 | MS.gene42622:CDS | 35.0% |
| ! | ATAATTGCTGATCGGTTTAG+TGG | - | chr3.4:91890500-91890519 | None:intergenic | 35.0% |
| ! | CTTGTGATGGTAACATTTTG+TGG | + | chr3.4:91888797-91888816 | MS.gene42622:CDS | 35.0% |
| ! | GGTTTTCATTTGGATCAGTT+TGG | + | chr3.4:91888931-91888950 | MS.gene42622:CDS | 35.0% |
| ! | TAGGGATGAACCTTATTTCA+GGG | - | chr3.4:91888271-91888290 | None:intergenic | 35.0% |
| ! | TCTCCACTCACATTTGAAAT+AGG | - | chr3.4:91888161-91888180 | None:intergenic | 35.0% |
| !! | ATTTTCCCTTCTCCTTGTTT+TGG | + | chr3.4:91889765-91889784 | MS.gene42622:intron | 35.0% |
| !! | CTCATGGACTATGAAGATTT+TGG | + | chr3.4:91889333-91889352 | MS.gene42622:CDS | 35.0% |
| !! | GAGATTTTGGGGGTTTATTT+GGG | - | chr3.4:91888295-91888314 | None:intergenic | 35.0% |
| !! | TAGCTTGTTGGCTAGTTTAA+CGG | + | chr3.4:91888718-91888737 | MS.gene42622:CDS | 35.0% |
| !! | TCTCATTGGAGCATTTTTGT+GGG | + | chr3.4:91889051-91889070 | MS.gene42622:CDS | 35.0% |
| !! | TTCTCATTGGAGCATTTTTG+TGG | + | chr3.4:91889050-91889069 | MS.gene42622:CDS | 35.0% |
| !!! | GTATTGGCCATTTTAGTTTC+AGG | + | chr3.4:91889230-91889249 | MS.gene42622:CDS | 35.0% |
| !!! | GTTTGTTTTTGTGTGCATTG+CGG | + | chr3.4:91888694-91888713 | MS.gene42622:CDS | 35.0% |
| !!! | TAATTTTGGCTTGGTAGTGA+AGG | + | chr3.4:91890749-91890768 | MS.gene42622:CDS | 35.0% |
| !!! | TTTGTTTTTGTGTGCATTGC+GGG | + | chr3.4:91888695-91888714 | MS.gene42622:CDS | 35.0% |
| AAAGTCTTTAGCAGATTGGG+TGG | + | chr3.4:91889934-91889953 | MS.gene42622:CDS | 40.0% | |
| AAGCCCAAATATGGTTGACA+AGG | + | chr3.4:91890525-91890544 | MS.gene42622:CDS | 40.0% | |
| ACTCCGTCGTTTCATGATTA+AGG | + | chr3.4:91889853-91889872 | MS.gene42622:CDS | 40.0% | |
| AGCAAGAGAAAGTTTCCTCA+TGG | + | chr3.4:91889317-91889336 | MS.gene42622:CDS | 40.0% | |
| AGGAAAGTTGAATCCAGTAG+AGG | + | chr3.4:91888632-91888651 | MS.gene42622:CDS | 40.0% | |
| AGTAATAAGCATCAAGGTGG+TGG | + | chr3.4:91888095-91888114 | MS.gene42622:CDS | 40.0% | |
| AGTAGTGTGGCTTCTTCTAA+TGG | + | chr3.4:91890154-91890173 | MS.gene42622:CDS | 40.0% | |
| ATATTCTTACTGGCAGCTAG+GGG | - | chr3.4:91889512-91889531 | None:intergenic | 40.0% | |
| ATGTTCTACAGACTCTCTCT+GGG | + | chr3.4:91889164-91889183 | MS.gene42622:CDS | 40.0% | |
| ATTGAACAAGCTTGTGACAG+GGG | + | chr3.4:91890112-91890131 | MS.gene42622:CDS | 40.0% | |
| CAATTGAACAAGCTTGTGAC+AGG | + | chr3.4:91890110-91890129 | MS.gene42622:CDS | 40.0% | |
| CAGATACCAAAACAAGGAGA+AGG | - | chr3.4:91889774-91889793 | None:intergenic | 40.0% | |
| CCAATCTGCTAAAGACTTTC+TGG | - | chr3.4:91889933-91889952 | None:intergenic | 40.0% | |
| CCAGAAAGTCTTTAGCAGAT+TGG | + | chr3.4:91889930-91889949 | MS.gene42622:CDS | 40.0% | |
| GAGTGACAGATACCAAAACA+AGG | - | chr3.4:91889780-91889799 | None:intergenic | 40.0% | |
| GCGAATGAGACTAACAACAA+AGG | + | chr3.4:91888658-91888677 | MS.gene42622:CDS | 40.0% | |
| GGACACATTTCTTCAATCCA+TGG | - | chr3.4:91888910-91888929 | None:intergenic | 40.0% | |
| GGGAAAATAAACATAGGCCA+TGG | - | chr3.4:91889753-91889772 | None:intergenic | 40.0% | |
| GTAATGCATCCGTTTGATGT+TGG | + | chr3.4:91890287-91890306 | MS.gene42622:CDS | 40.0% | |
| GTGGCATGTTAGTTACCAAA+TGG | + | chr3.4:91888816-91888835 | MS.gene42622:CDS | 40.0% | |
| TAACGGTTGAGAAACTGAGA+AGG | + | chr3.4:91888735-91888754 | MS.gene42622:CDS | 40.0% | |
| TAGAAGAAGCCACACTACTA+TGG | - | chr3.4:91890153-91890172 | None:intergenic | 40.0% | |
| TATGTTCTACAGACTCTCTC+TGG | + | chr3.4:91889163-91889182 | MS.gene42622:CDS | 40.0% | |
| TCCTTTGGTATTTCCCCTAT+TGG | + | chr3.4:91889883-91889902 | MS.gene42622:CDS | 40.0% | |
| TGGAGAGGAATCCACAATAT+TGG | + | chr3.4:91890721-91890740 | MS.gene42622:CDS | 40.0% | |
| TGGATTGAAGAAATGTGTCC+AGG | + | chr3.4:91888910-91888929 | MS.gene42622:CDS | 40.0% | |
| TTTCTTTGTGCCGCCATTAA+CGG | - | chr3.4:91889263-91889282 | None:intergenic | 40.0% | |
| ! | ACTCTTGTTTCCCTTCTCAT+TGG | + | chr3.4:91889037-91889056 | MS.gene42622:CDS | 40.0% |
| ! | AGGGATGAACCTTATTTCAG+GGG | - | chr3.4:91888270-91888289 | None:intergenic | 40.0% |
| ! | ATTTGCAGCAGGAGATTTTG+GGG | - | chr3.4:91888306-91888325 | None:intergenic | 40.0% |
| ! | CAGCTGCCTATTACATTTTC+AGG | + | chr3.4:91889473-91889492 | MS.gene42622:CDS | 40.0% |
| ! | CATTTGCAGCAGGAGATTTT+GGG | - | chr3.4:91888307-91888326 | None:intergenic | 40.0% |
| ! | CTAGGGATGAACCTTATTTC+AGG | - | chr3.4:91888272-91888291 | None:intergenic | 40.0% |
| ! | GGGTGCTTTTAATCAATCGT+GGG | + | chr3.4:91888966-91888985 | MS.gene42622:CDS | 40.0% |
| ! | GGTGCTTTTAATCAATCGTG+GGG | + | chr3.4:91888967-91888986 | MS.gene42622:CDS | 40.0% |
| ! | GTAAGTTTTGCATTTGCAGC+AGG | - | chr3.4:91888317-91888336 | None:intergenic | 40.0% |
| ! | GTGTGTTATAGATGGTGTTG+AGG | + | chr3.4:91890316-91890335 | MS.gene42622:CDS | 40.0% |
| ! | TGGGTGCTTTTAATCAATCG+TGG | + | chr3.4:91888965-91888984 | MS.gene42622:CDS | 40.0% |
| ! | TTTGGAGTTTAAGGCTTTGG+AGG | + | chr3.4:91888765-91888784 | MS.gene42622:CDS | 40.0% |
| !! | ACCGTTCCAGACTTGTTATT+CGG | - | chr3.4:91888515-91888534 | None:intergenic | 40.0% |
| !! | AGCTTTGGAGTTTAAGGCTT+TGG | + | chr3.4:91888762-91888781 | MS.gene42622:CDS | 40.0% |
| !! | GAGGTATTGTATGCTTGTGA+TGG | + | chr3.4:91888784-91888803 | MS.gene42622:CDS | 40.0% |
| !! | GGAGATTTTGGGGGTTTATT+TGG | - | chr3.4:91888296-91888315 | None:intergenic | 40.0% |
| !! | TGATTAAAAGCACCCATGTG+AGG | - | chr3.4:91888961-91888980 | None:intergenic | 40.0% |
| !! | TTCAGGAGTACTACCGTTAA+TGG | + | chr3.4:91889247-91889266 | MS.gene42622:CDS | 40.0% |
| !!! | TTGGCATCCTAATTTTGGCT+TGG | + | chr3.4:91890740-91890759 | MS.gene42622:CDS | 40.0% |
| AACTGAGAAGGACAGAGCTT+TGG | + | chr3.4:91888747-91888766 | MS.gene42622:CDS | 45.0% | |
| ACGACACCAGCAGAGAAAAT+TGG | + | chr3.4:91890568-91890587 | MS.gene42622:CDS | 45.0% | |
| ACTGTGCTTCCCCTGAAATA+AGG | + | chr3.4:91888258-91888277 | MS.gene42622:CDS | 45.0% | |
| AGATACAGCCTTCTTCCACA+AGG | + | chr3.4:91890909-91890928 | MS.gene42622:CDS | 45.0% | |
| AGGTGTTCATCTCAGACACA+TGG | + | chr3.4:91890929-91890948 | MS.gene42622:CDS | 45.0% | |
| AGTTTGGAGAGAAGACCAAG+CGG | + | chr3.4:91890835-91890854 | MS.gene42622:CDS | 45.0% | |
| ATCCGTTTGATGTTGGCGAT+CGG | + | chr3.4:91890294-91890313 | MS.gene42622:CDS | 45.0% | |
| ATCGGTGGAACTCCAAGTAT+TGG | + | chr3.4:91889214-91889233 | MS.gene42622:CDS | 45.0% | |
| ATGGAAGAGGCTGAGAAGAT+CGG | + | chr3.4:91889196-91889215 | MS.gene42622:CDS | 45.0% | |
| CAAAATCTTTGCGGCCAGTT+TGG | - | chr3.4:91889002-91889021 | None:intergenic | 45.0% | |
| CACTCCTAGAACACCTTTGA+TGG | + | chr3.4:91888565-91888584 | MS.gene42622:CDS | 45.0% | |
| CATGATCATGATCTTGGCCA+TGG | - | chr3.4:91888184-91888203 | None:intergenic | 45.0% | |
| CATTCGCCGAATAACAAGTC+TGG | + | chr3.4:91888506-91888525 | MS.gene42622:CDS | 45.0% | |
| CGACACCAGCAGAGAAAATT+GGG | + | chr3.4:91890569-91890588 | MS.gene42622:CDS | 45.0% | |
| CTACTATGGTCACCACTACT+AGG | - | chr3.4:91890139-91890158 | None:intergenic | 45.0% | |
| CTTTAGCAGATTGGGTGGTA+AGG | + | chr3.4:91889939-91889958 | MS.gene42622:intron | 45.0% | |
| GACACCAGCAGAGAAAATTG+GGG | + | chr3.4:91890570-91890589 | MS.gene42622:CDS | 45.0% | |
| GATGAACACCTTGTGGAAGA+AGG | - | chr3.4:91890920-91890939 | None:intergenic | 45.0% | |
| GATGGAGAACAGAAGAGAAG+TGG | + | chr3.4:91888130-91888149 | MS.gene42622:CDS | 45.0% | |
| GCCAATAGGGGAAATACCAA+AGG | - | chr3.4:91889887-91889906 | None:intergenic | 45.0% | |
| GCCGAATAACAAGTCTGGAA+CGG | + | chr3.4:91888511-91888530 | MS.gene42622:CDS | 45.0% | |
| GGTTGACAAGGTAGAGTTCT+CGG | + | chr3.4:91890537-91890556 | MS.gene42622:CDS | 45.0% | |
| TACTCGCGGCTTTCATGTTT+GGG | + | chr3.4:91890222-91890241 | MS.gene42622:CDS | 45.0% | |
| TAGTGGTGACCATAGTAGTG+TGG | + | chr3.4:91890141-91890160 | MS.gene42622:CDS | 45.0% | |
| TATTGGCACAGTCAGAGACA+GGG | + | chr3.4:91889900-91889919 | MS.gene42622:CDS | 45.0% | |
| TCAAATGTGAGTGGAGACCA+TGG | + | chr3.4:91888164-91888183 | MS.gene42622:CDS | 45.0% | |
| TGTCTCTGACTGTGCCAATA+GGG | - | chr3.4:91889900-91889919 | None:intergenic | 45.0% | |
| TTCTCAGCCTCTTCCATAAG+TGG | - | chr3.4:91889193-91889212 | None:intergenic | 45.0% | |
| TTGGGGGTTTATTTGGGCTA+GGG | - | chr3.4:91888289-91888308 | None:intergenic | 45.0% | |
| TTTGGGGGTTTATTTGGGCT+AGG | - | chr3.4:91888290-91888309 | None:intergenic | 45.0% | |
| ! | ACAAGTCTGGAACGGTGAAT+CGG | + | chr3.4:91888519-91888538 | MS.gene42622:CDS | 45.0% |
| ! | GACGACGTTGCTAAAGGTTT+TGG | + | chr3.4:91889081-91889100 | MS.gene42622:CDS | 45.0% |
| ! | GCATTTGCAGCAGGAGATTT+TGG | - | chr3.4:91888308-91888327 | None:intergenic | 45.0% |
| ! | TCAGGGGAAGCACAGTTTAA+AGG | - | chr3.4:91888254-91888273 | None:intergenic | 45.0% |
| ! | TGGTGGTGAAGTAAGCATGA+TGG | + | chr3.4:91888112-91888131 | MS.gene42622:CDS | 45.0% |
| ! | TGTCTGAGATGAACACCTTG+TGG | - | chr3.4:91890927-91890946 | None:intergenic | 45.0% |
| ! | TTTGCAGCAGGAGATTTTGG+GGG | - | chr3.4:91888305-91888324 | None:intergenic | 45.0% |
| !! | AGGAGTACTACCGTTAATGG+CGG | + | chr3.4:91889250-91889269 | MS.gene42622:CDS | 45.0% |
| !! | CAGTTTGGTTCTCCTCACAT+GGG | + | chr3.4:91888946-91888965 | MS.gene42622:CDS | 45.0% |
| !! | GATGCCATCAAAGGTGTTCT+AGG | - | chr3.4:91888572-91888591 | None:intergenic | 45.0% |
| !! | GGACAGAGCTTTGGAGTTTA+AGG | + | chr3.4:91888756-91888775 | MS.gene42622:CDS | 45.0% |
| !! | TCAGTTTGGTTCTCCTCACA+TGG | + | chr3.4:91888945-91888964 | MS.gene42622:CDS | 45.0% |
| CACCGATCGCCAACATCAAA+CGG | - | chr3.4:91890299-91890318 | None:intergenic | 50.0% | |
| CTATTGGCACAGTCAGAGAC+AGG | + | chr3.4:91889899-91889918 | MS.gene42622:CDS | 50.0% | |
| CTGTCTCTGACTGTGCCAAT+AGG | - | chr3.4:91889901-91889920 | None:intergenic | 50.0% | |
| GGCGATCGGTGTGTTATAGA+TGG | + | chr3.4:91890308-91890327 | MS.gene42622:CDS | 50.0% | |
| GTACTCGCGGCTTTCATGTT+TGG | + | chr3.4:91890221-91890240 | MS.gene42622:CDS | 50.0% | |
| GTCTCTGACTGTGCCAATAG+GGG | - | chr3.4:91889899-91889918 | None:intergenic | 50.0% | |
| TCAGCCTCTTCCATAAGTGG+AGG | - | chr3.4:91889190-91889209 | None:intergenic | 50.0% | |
| TCTCATTCGCTTGCCTCTAC+TGG | - | chr3.4:91888648-91888667 | None:intergenic | 50.0% | |
| TTAGTGGCGAGGACAGAGTT+TGG | - | chr3.4:91890484-91890503 | None:intergenic | 50.0% | |
| ! | ACACCTTTGATGGCATCTCC+AGG | + | chr3.4:91888575-91888594 | MS.gene42622:CDS | 50.0% |
| ! | AGTGCCCCAATTTTCTCTGC+TGG | - | chr3.4:91890577-91890596 | None:intergenic | 50.0% |
| ! | GGGGAAGCACAGTTTAAAGG+TGG | - | chr3.4:91888251-91888270 | None:intergenic | 50.0% |
| CACCAGTTCACTTCTCCGCT+TGG | - | chr3.4:91890853-91890872 | None:intergenic | 55.0% | |
| CGAGTACTAGCTGCGATGAG+AGG | - | chr3.4:91890208-91890227 | None:intergenic | 55.0% | |
| CTCATCGCAGCTAGTACTCG+CGG | + | chr3.4:91890208-91890227 | MS.gene42622:CDS | 55.0% | |
| GAAGAGGCTGAGAAGATCGG+TGG | + | chr3.4:91889199-91889218 | MS.gene42622:CDS | 55.0% | |
| GACCAAGCGGAGAAGTGAAC+TGG | + | chr3.4:91890848-91890867 | MS.gene42622:CDS | 55.0% | |
| GCGGAGAAGTGAACTGGTGA+TGG | + | chr3.4:91890854-91890873 | MS.gene42622:CDS | 55.0% | |
| GGACCTGGAGATGCCATCAA+AGG | - | chr3.4:91888581-91888600 | None:intergenic | 55.0% | |
| GGCGACTTTGTAGAGTAGCG+AGG | - | chr3.4:91888230-91888249 | None:intergenic | 55.0% | |
| TCATCAAGATCCTCCCCAGC+AGG | - | chr3.4:91888602-91888621 | None:intergenic | 55.0% | |
| TCTCTCTGGGCCTCCACTTA+TGG | + | chr3.4:91889177-91889196 | MS.gene42622:CDS | 55.0% | |
| TGCGGCCAGTTTGGATCGAT+GGG | - | chr3.4:91888993-91889012 | None:intergenic | 55.0% | |
| TGGGCCTCCACTTATGGAAG+AGG | + | chr3.4:91889183-91889202 | MS.gene42622:CDS | 55.0% | |
| TGTGACAGGGGTCCTAGTAG+TGG | + | chr3.4:91890124-91890143 | MS.gene42622:CDS | 55.0% | |
| TTGCGGCCAGTTTGGATCGA+TGG | - | chr3.4:91888994-91889013 | None:intergenic | 55.0% | |
| ! | GTGCATTGCGGGTAGCTTGT+TGG | + | chr3.4:91888706-91888725 | MS.gene42622:CDS | 55.0% |
| ! | TGCTGATCGGTTTAGTGGCG+AGG | - | chr3.4:91890495-91890514 | None:intergenic | 55.0% |
| ATGGCATCTCCAGGTCCTGC+TGG | + | chr3.4:91888584-91888603 | MS.gene42622:CDS | 60.0% | |
| TGGCATCTCCAGGTCCTGCT+GGG | + | chr3.4:91888585-91888604 | MS.gene42622:CDS | 60.0% | |
| TGGGGCCCATCGATCCAAAC+TGG | + | chr3.4:91888985-91889004 | MS.gene42622:CDS | 60.0% | |
| AGATCCTCCCCAGCAGGACC+TGG | - | chr3.4:91888596-91888615 | None:intergenic | 65.0% | |
| ATCTCCAGGTCCTGCTGGGG+AGG | + | chr3.4:91888589-91888608 | MS.gene42622:CDS | 65.0% | |
| GGCATCTCCAGGTCCTGCTG+GGG | + | chr3.4:91888586-91888605 | MS.gene42622:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 91888089 | 91890977 | 91888089 | ID=MS.gene42622 |
| chr3.4 | mRNA | 91888089 | 91890977 | 91888089 | ID=MS.gene42622.t1;Parent=MS.gene42622 |
| chr3.4 | exon | 91888089 | 91889521 | 91888089 | ID=MS.gene42622.t1.exon1;Parent=MS.gene42622.t1 |
| chr3.4 | CDS | 91888089 | 91889521 | 91888089 | ID=cds.MS.gene42622.t1;Parent=MS.gene42622.t1 |
| chr3.4 | exon | 91889835 | 91889955 | 91889835 | ID=MS.gene42622.t1.exon2;Parent=MS.gene42622.t1 |
| chr3.4 | CDS | 91889835 | 91889955 | 91889835 | ID=cds.MS.gene42622.t1;Parent=MS.gene42622.t1 |
| chr3.4 | exon | 91890044 | 91890337 | 91890044 | ID=MS.gene42622.t1.exon3;Parent=MS.gene42622.t1 |
| chr3.4 | CDS | 91890044 | 91890337 | 91890044 | ID=cds.MS.gene42622.t1;Parent=MS.gene42622.t1 |
| chr3.4 | exon | 91890412 | 91890614 | 91890412 | ID=MS.gene42622.t1.exon4;Parent=MS.gene42622.t1 |
| chr3.4 | CDS | 91890412 | 91890614 | 91890412 | ID=cds.MS.gene42622.t1;Parent=MS.gene42622.t1 |
| chr3.4 | exon | 91890716 | 91890977 | 91890716 | ID=MS.gene42622.t1.exon5;Parent=MS.gene42622.t1 |
| chr3.4 | CDS | 91890716 | 91890977 | 91890716 | ID=cds.MS.gene42622.t1;Parent=MS.gene42622.t1 |
| Gene Sequence |
| Protein sequence |
