AlfalfaGEDB | MS.gene43215

M. sativa cultivar XinJiangDaYe / MS.gene43215

KEGG: -
GO: GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016070 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:1901360
PFAM: PF09429.13 PF12622.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43215.t1	XP_013457860.1	89.7	546	52	3	1	545	1	543	1.70E-119	439.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43215.t1	G3CHK5	66.7	550	163	9	3	544	2	539	1.7e-75	285.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43215.t1	A0A072URC9	89.7	546	52	3	1	545	1	543	1.3e-119	439.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene43215	-0.817667	2.93E-52	-1.69E-46
MS.gene049669	MS.gene43215	-0.813426	2.58E-51	-1.69E-46
MS.gene050750	MS.gene43215	-0.811429	7.03E-51	-1.69E-46
MS.gene050905	MS.gene43215	0.80753	4.83E-50	-1.69E-46
MS.gene050953	MS.gene43215	-0.809274	2.05E-50	-1.69E-46
MS.gene051832	MS.gene43215	-0.802751	4.83E-49	-1.69E-46
MS.gene052056	MS.gene43215	0.813429	2.57E-51	-1.69E-46
MS.gene052239	MS.gene43215	0.842033	3.31E-58	-1.69E-46
MS.gene052358	MS.gene43215	0.83402	3.82E-56	-1.69E-46
MS.gene052582	MS.gene43215	-0.810694	1.02E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43215.t1	MTR_4g107410	96.154	546	17	3	1	545	1	543	0.0	981
MS.gene43215.t1	MTR_4g107420	68.681	546	103	10	1	545	1	479	3.99e-122	368
MS.gene43215.t1	MTR_4g107420	87.784	352	37	3	195	545	62	408	5.04e-102	313
MS.gene43215.t1	MTR_4g107420	87.784	352	37	3	195	545	56	402	8.23e-102	313
MS.gene43215.t1	MTR_0444s0010	81.203	133	15	1	1	123	1	133	4.24e-64	213
MS.gene43215.t1	MTR_0444s0010	89.899	198	17	2	195	391	62	257	6.63e-47	164
MS.gene43215.t1	MTR_0444s0010	88.832	197	17	3	195	390	62	254	2.75e-43	155

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43215.t1	AT5G62640	72.678	183	42	3	3	183	2	178	5.47e-73	241
MS.gene43215.t1	AT5G62640	75.000	152	30	3	3	152	2	147	2.97e-69	231
MS.gene43215.t1	AT5G62640	56.897	232	78	7	322	545	323	540	9.88e-31	126

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Find 200 sgRNAs with CRISPR-Local

Find 528 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGAAAGAAGGTGA+GGG	0.585531	8.4:+19506334	MS.gene43215:CDS
AAAATGACCCTAACCTGACC+AGG	0.588301	8.4:-19510158	None:intergenic
AAAGCCCTTGGCGCACTTGA+TGG	0.419887	8.4:+19512467	MS.gene43215:CDS
AAAGGAGGCCTCATATCAGG+TGG	0.677019	8.4:-19511103	None:intergenic
AAGAAAGAAGGTGAGGGATG+TGG	0.403157	8.4:+19506340	MS.gene43215:CDS
AAGAGGATCATATGGCAACT+AGG	0.554783	8.4:+19511269	MS.gene43215:CDS
AAGCTCCTTTCGATAAGCAT+CGG	0.633489	8.4:-19506081	None:intergenic
AAGGAGAACAAGTGCAGAAG+AGG	0.507831	8.4:+19509274	MS.gene43215:CDS
AAGGCAACAGCTTCCTGGTC+CGG	0.368107	8.4:+19511006	MS.gene43215:CDS
AAGTACTGCTGCATCATCCT+CGG	0.566168	8.4:+19509791	MS.gene43215:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGAAAGAAAGAAGGTG+AGG	+	chr8.4:19506333-19506352	MS.gene43215:CDS	30.0%
AAAAGAAAGAAAGAAGGTGA+GGG	+	chr8.4:19506334-19506353	MS.gene43215:CDS	30.0%
AAAATACAAATGCACAACAC+AGG	-	chr8.4:19508985-19509004	None:intergenic	30.0%
AAATGTGAAAAATGCAAAGG+GGG	+	chr8.4:19508051-19508070	MS.gene43215:intron	30.0%
AACAAACTAGGACAAATTAG+TGG	+	chr8.4:19511904-19511923	MS.gene43215:intron	30.0%
AATTCAAAAGGATTCAGTGT+GGG	+	chr8.4:19510311-19510330	MS.gene43215:intron	30.0%
ACTAAGAGCAATCAAAAGTA+AGG	-	chr8.4:19510757-19510776	None:intergenic	30.0%
ACTGATAAATTACCACTTAG+AGG	-	chr8.4:19508261-19508280	None:intergenic	30.0%
AGAATTTCCTTTACTTCTTC+GGG	-	chr8.4:19507594-19507613	None:intergenic	30.0%
AGGAATATGATGAGAAAAAG+CGG	+	chr8.4:19509116-19509135	MS.gene43215:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	19506041	19512493	19506041	ID=MS.gene43215
chr8.4	mRNA	19506041	19512493	19506041	ID=MS.gene43215.t1;Parent=MS.gene43215
chr8.4	exon	19506041	19506124	19506041	ID=MS.gene43215.t1.exon1;Parent=MS.gene43215.t1
chr8.4	CDS	19506041	19506124	19506041	ID=cds.MS.gene43215.t1;Parent=MS.gene43215.t1
chr8.4	exon	19506329	19506422	19506329	ID=MS.gene43215.t1.exon2;Parent=MS.gene43215.t1
chr8.4	CDS	19506329	19506422	19506329	ID=cds.MS.gene43215.t1;Parent=MS.gene43215.t1
chr8.4	exon	19507262	19507347	19507262	ID=MS.gene43215.t1.exon3;Parent=MS.gene43215.t1
chr8.4	CDS	19507262	19507347	19507262	ID=cds.MS.gene43215.t1;Parent=MS.gene43215.t1
chr8.4	exon	19509118	19509167	19509118	ID=MS.gene43215.t1.exon4;Parent=MS.gene43215.t1
chr8.4	CDS	19509118	19509167	19509118	ID=cds.MS.gene43215.t1;Parent=MS.gene43215.t1
chr8.4	exon	19509256	19509325	19509256	ID=MS.gene43215.t1.exon5;Parent=MS.gene43215.t1
chr8.4	CDS	19509256	19509325	19509256	ID=cds.MS.gene43215.t1;Parent=MS.gene43215.t1
chr8.4	exon	19509573	19509654	19509573	ID=MS.gene43215.t1.exon6;Parent=MS.gene43215.t1
chr8.4	CDS	19509573	19509654	19509573	ID=cds.MS.gene43215.t1;Parent=MS.gene43215.t1
chr8.4	exon	19509760	19510166	19509760	ID=MS.gene43215.t1.exon7;Parent=MS.gene43215.t1
chr8.4	CDS	19509760	19510166	19509760	ID=cds.MS.gene43215.t1;Parent=MS.gene43215.t1
chr8.4	exon	19510857	19511387	19510857	ID=MS.gene43215.t1.exon8;Parent=MS.gene43215.t1
chr8.4	CDS	19510857	19511387	19510857	ID=cds.MS.gene43215.t1;Parent=MS.gene43215.t1
chr8.4	exon	19512260	19512493	19512260	ID=MS.gene43215.t1.exon9;Parent=MS.gene43215.t1
chr8.4	CDS	19512260	19512493	19512260	ID=cds.MS.gene43215.t1;Parent=MS.gene43215.t1

Gene Sequence

>MS.gene43215

ATGACGAAGACCACTAAAGGCGGTAAGGTGATGAACCCTACCGATGCTTATCGAAAGGAGCTTCGCAAAAAGGAATTGAAAAGGGTAACTATCTATCTGTTTTCACTTTCATCACAATTAATTCAAATTTTGAGTGCTAGTTTTGCAAAATTAAATTTGGATTATGCAAATATGGTTTTTTCAGACATACTTATGCTAGCTTAATTAAACCGTTTATCCAAATACTGACTTAATCACTGATTTATGTTCTTAAAGTTCACATTTTTGCTTTGTTGTTTTGGTTTGCAGAATAAAAAAGAAAGAAAGAAGGTGAGGGATGTGGGGATTTTGAAGAAAGATCCTGATCAACTCAAGAAGCAGATTGAGAATTTGGAAATGATGAGTAAGTTGCATAGTGCTTTATTTTATTAACTAGCTTTTGCATTCCAAGGAACTGGAATTTCACCCTCATTTTTGTTGGTATAGTCAATTTTGTTTAGAGATTAGCAATTATACGCTATCTGTTTAAATTAGTTTTACACTGACATCCAATGCAAGCCATTTATTTTGCAACCTTATACTTCATATTATTAGTTTTAATATTAATTTAGAAGCCTAGGCTGATGTGACAGAACAGTGGAATCTTATGTGACACATGGGAATGGGAATAGTTGGTTAGAAATCTCACTAGGGATTCGTCTTTCAAACCACTTTGTGTCTCTCCCTCCCTAAACCGCCAAACCAGCTTAACACTCCACTATGTTGGCAAAAGGTGTACCGGGCATTGCAAAAGGATTACTCTAGTAGTTGTCTGGGTTTGAACAGTCAGTTCGATATATGAACTTGTGAAAACTAATTTTCAGGGAGTAGGACTAATCATACAAATCAAATATAGAACTGCTAGGCTTATTTTAGAGAACCGTAAATCTTATCAAATCGTAACAATGAAAAACATAATGAAAAATAACATAAAGTTTCTCATATATAAATAAACATTGTATTCAATATACTATACACTACAGTTGCTGACTTTTTCATTTTGTATTCTTCTTAGTCTGTTCCTAATCCCTACCCCAGTATTCCACTTTTATTCCAAAATGTGGTATGGACATAACAATCCTTTAGTTGTTTCCCTGGCATGCATTAGTAGTGTAATTATAATTTAATTATAACTTACAATTGAGATGACATTTTATATACTTTTGCCTATTGAAAACCACTGCGCACTGTTTGTTGTTGCAGAGGCTGATGGCGCCTTGGATAAAGCAAGAAAGCACAAAAAGAGGCAACTAGAAGATACACTTAATCGTGTCATTAAGAAGCAGAAGGTAACAACTCATACATATCTGTTTTGTTGGGCCACTTTTTATTCCTCTACATTACTTTTCAGATTTTTATGTAGTTATGTGCAATTGTTTTTTTTCTTGAATGTAAAAAAGATAAAACAGTGAGAACTGACTTCTGGATTATTGAGGCCAATATCTGTTTTCTCTTGATGAGACTATGGCGTTTTTCAATACCCTGAGCGTATCAAGTTTGCAGAGGGTTTCCTATCAAACTTCTTTCCCATACCCGAAGAAGTAAAGGAAATTCTGGTGTGTTTAAAGATAGTGATACTGTGAGATTCAGTTAATGTTCTTTCAAGGTAGAAACTTGCTACTGGCAATACATGAAAAATAGTCATCAGCTCATTAAATCACCAATTCAGAGAGTACTGATCACTGTATATGTCTGCTGATACATGTGTTTTTTGGTTTTTAATTGTCTCATTTTTCTTCGCCGTAATGTTATCACATACTCCCTCCGTCCCTATATATAAGCACCCATTTGACTAAAAATTTGTCCCTAAATATAAGCCTCTTTTCAAATTACTAGATGCATTTTTTTTAATGCTAAACATACCCCTAATTAATACTACTAACTTGTCTTGAACTATGAAAAGTCAAATTTAATACACATACAAACAAAGGACAATTTGGTAATATTAACCACAAAATAGACACATTAATTGCACTAACAACGTTTCTTAAGAAATGTGAAAAATGCAAAGGGGGCTTATATATAGGGACGGAGGGAGCATAAAGTATTGCTACTTTCATGCTTCTGAACACCATTTGTAACTTGCAGAGTGGTTAATGTACTATACTTGTCCATAGATAAGTATCACTAAGAGTAGCTGAAGGTCCATAGATAAGTATCACTAAGAGTAGATGAAGGTCCCTCTTAGGTTTATCATTGCCTCTAAGTGGTAATTTATCAGTGCTGTCAGGCCATGGTGGATGGCGGTGGTGGATTTTTTCGCCTACTGCTATGGCCCATTTACGAAGAAAGGCGACACTATGATGTTTTATGATGGAAATGGTACCTTAGAATGACAGTTTTTTGGCCTTCCGCAATTGATAATACTGCTTGGTTGATCAGAGTATGACAGAAATGGGATGCTGTCAATTAATAAAAATAAAGACAACCTCATAACCAAGAGAACATATACCAAGCACATGTTCTGATGCAAAAATTTATTTGTTTCTTATCGTCTATAATTGTTTCTCTCTTCAACATAATTAAGAAACTTATTGTTATACCGTATAGAGTGATTGCTAATTACATGACTCTGAAACCAGTTGAAACAAGCACTTTGTTGACGTACAATTCTTCTCCGTAGGCAAGTTCCACTAACAGTAGCTGAAGGGACGTATTGGGTTTATCATAATCTGTAAGTGGTAGTGTTGTTGATATTTTTTTGGTCCAATGTAAAAAGGTTGTCCTTTTGTAGCCATAGGCTGCAATGCGTTTCTATTGAAATAAACTTGTAACGGGTCATTGTTAATTTTGACTTTAGACAGACCCATGCTTTTTTTTTGGTGAACATTCAAGTCTTGATTGGTAAAAGGAAAAAGCATAACTTTATGGATATAAAGTATTCATGAATTGAGTTTGATATTTGCGTTAGTAGCTGAAGCTGCCTGTGTTGTGCATTTGTATTTTTATTTAGCATAGGATACTGAATTCAGCTTGAATTCGAACGCTCCAGTCAACTGTATGCATGATTTTATTAAATAGTTCCTATTGATTATCTAAATCTGATATCTTTTGGACAGGAATATGATGAGAAAAAGCGGGAGAAGGGTGAGGCCCCTGTTATGTTCAGGTGAGCAATTGAGTACTATTTTCAAGTACAAATTTATGCCCAATTTGTTTTTGTGTAGTTTATAAGTCCTTGGATGTCTTTTGAGCAGTCATTTGGGGCTTCCACAAAGGAGAACAAGTGCAGAAGAGGAAGATAGAGTTAATCACCCACAGCCAGAGGTATGATTTAAGTTTTTCTTGTGTGTGCATGTTTATGTTTTTATTCTTCTTATTCTTATTCTTCTTCTAATTCTTACAAAACTAGAGTTGTCTAGGTGTTGTAAATGGTTTTCGAGTTACTAACTGATTTTTACTACATGACTCTGTTTATTACCATCTTATTCTTATTCTTCTTCCTATTCTTACAAAACTAGAGTTGTCCAGGTGTTATAAATGGTTTCGAGTTACTAACTGATTTTTACTACAGGACTCTGTTTATTACCATCCTCAATTAAATCCCACCGGGGCTCCACCGCCAGGGAAACCTCCCATGTATCATTCGCCTATAGGTATGCCGAACTTCTTTTTCATATTTGATTGGTAAAATAATGTATCTGTAAATGATATTGTTTTGACATCTCCTTTATTTAATCAGTTTTCATGCTGAACTGCAGGACCTAGAATTCCCTTGTTTGGTGCTTCGTCAAGTACTGCTGCATCATCCTCGGCAACAGAGTCCGATGATGGTGTATTAGCTGTACCTCCACCTCCCCCACCACCACCACTACCTGAAGCTAGTTCAGCTGATGGTGCTGTTTTACCTGCATCTTTGCCACTGCCTCCCCCACCTCCCATGCCTCCAAATCCCACTACTGCGGTGCCTGCATCATTACCACCACCTCCTTTGCCGCCACCACCTCCTGGTCCTCCACCTAAAGAGCAAGCTGTAAATCGGCCTTTACCCCCTCCTCCTCCTCCACCTCTAAAACAGTCTCAGCCACCTCCACCTGGCACCAGTGAAGGTGAAGAGAGAAATCAGAATGCATTGCCAGATAATCTATCTTCCAAGGAGCCTGGTCAGGTTAGGGTCATTTTTAGTTAATGACTTAGGCTTTTTTTCAAGACATTATCTGAATGTATAAGTATGAAAGGACCTGAAATTGTATGTATTTATTGAAAGTTTAGAAGCATCGGTGCTGTTGTCGGCATTTTTATTTTTTTTTTTAATTCAAAAGGATTCAGTGTGGGGATGCTGATGTTTTTCAAAATGTAGGATGTGAGTATGGCAGGGAAATATTTAATAAATATTTTTTTTAAAGAAAATATTTGTATGTTTACTAAATAATTGTAAATACTAAATAGTATCAGTATGTTATCATTTGTTTAGAAATACTAAAGACTTTTAAATGTTCAATTGGGCTGCAGACAAGTTTTAGTCTATTTCGCTGTGTTAGTTTGTTTCAGTACCAGTTTTCATTGTTTTTAAACATTTCAAAGTACGTTCAAGCTGAAAAAAGATTGATATGTATATGCTGTTGTCTCTTGCTTGTATATGACTATCTGATATCTGATCTCAGGTATACCATATGCCACAGGTTTTTGTCAATTCATGCTTCATATATGGCTACTAGGCACTTGTCATAGTTGCCAAATGCCCAAATGGGAACACCTTACTTTTGATTGCTCTTAGTTTGAAAATCTGTCCTGTTGTTATTATATCTTAACAAAAGCTTCTATGGAAATAACATTTTTTTTTCACCCTGAAATGTAGGTGCAGCTTCCTCCGCCCCCTCCACCACCAAGTCGTATGCCACAAAATTCTGGTGCTATTCAGTTTGATGGTGCTGTAGTTTCTACTGACAATAAGCATTCTTTGTCAAACCAGGAGATCCAAAAATTGGTTCCTGGGCCTCCTCCTCCAAGGCAACAGCTTCCTGGTCCGGGACCCACATTAATCCCGAGTGTACCTGATGTATTGCCTCCTGGAATATCTCGGTTCCCACCACCCCCACCCCCACCACCTGATATGAGGCCTCCTTTACCTGTGATTGGACTTCCTGGTCAGGCACCACCTCCTGGAATGATGGTCCCCCTAATCCCAAGGCCCCCATATGGTCCTCCACCTGGGCCTCCTCCAATGATGAGACCACCACTTCCACCTGGTCCTCCTCCGAACTTTCAGGAAGAGGATCATATGGCAACTAGGCCACTTCCTGCTCCGAAACCATCATATGTTAAATCTGCTGCTTCTACTGTTGTTAAAAGGCCATTAGCTCAGCACACTCCAGAACTCACATCTATGGTAAGTTGATTCAAGTTGTTTTCTTATTTATAGCTTTGCATTTATTTCAGCTCTCGAGTTTTATTCTTCCCCATACCTCTGTTAAGTACACCTAGTTCAAAATTGTTTTGAAACATAATGTCTTCTCAAGTAAAGTTTCTTGCAGTAGTGTATATTAATATTTTCAGACGGCTGAATAAGCTAATGACAACATACTGTAAATATTCTGATGCTAATATTGATCCAGACCAAAATAATTTTGTTGTTTGCACGTAAACACCAACCTTTGTACTTGATCTGTTATTTTGAAAATTCTGTTATTTTATTATGAATGGAGAGCAGTAGCACTCTGTAGGAGCTTATATCTCCATGGCAGTCGGAGTCACATCTCTTCTGTAAACCCCTCCATGCACAAGCAACAATACCGTATTACCGATCCATTCCTTAAATTAGCCATTTCTTAATGCTTTATTATTTCTCTGTTGGTTCTGGTTTGTATCAGCAGTTCCCCATGTCTAATGCACGGGTGAACAAGTAAACAAACTAGGACAAATTAGTGGTTGCAAAACTGTTTTAATTATGGAGACTACATCTACACGTTTGATTATTGACAATTTTTTTTTATCAACGATTAATGACAATTTGATTCTCATGATGATGCAACCAAATAATTAATTGACTTCACTGCTACATGGGCATATAAATTCAAGTGTCGAGAAAAGTTGGCTTTAGGTAGTGGTCAAAATTTGAATTCTCAGAGATGTTTCTGAGTAATGTCTCAGTTAATTAAGTTGACAGATACGACCACTTAAAGTGGCATCATTTGTTAATATTTTGATCTCTTTGTATATGTAATTGCTCTTATATAGTCTGGGTCATGTTTTTTTTACTAGGTTCCTGCATCTGTGCGGGTGAGAAGGGAGACTGCAATGACCAAAACAAAACCAAAACCATCTGTATCAACAGTGTCAGTGTCAACATCTAGGACAGTCTCTGTGACACCTGGGCCAACTATTTTAAAAGCAGAGTCAGTGAGCTCGTCGTCTGCTCCAAAAGCACCAAGCATTGATGACTCATACACAGCTTTCTTAGAGGACATGAAAGCCCTTGGCGCACTTGATGGTTGA

Protein sequence

>MS.gene43215.t1

MTKTTKGGKVMNPTDAYRKELRKKELKRNKKERKKVRDVGILKKDPDQLKKQIENLEMMKADGALDKARKHKKRQLEDTLNRVIKKQKEYDEKKREKGEAPVMFSHLGLPQRRTSAEEEDRVNHPQPEDSVYYHPQLNPTGAPPPGKPPMYHSPIGPRIPLFGASSSTAASSSATESDDGVLAVPPPPPPPPLPEASSADGAVLPASLPLPPPPPMPPNPTTAVPASLPPPPLPPPPPGPPPKEQAVNRPLPPPPPPPLKQSQPPPPGTSEGEERNQNALPDNLSSKEPGQVQLPPPPPPPSRMPQNSGAIQFDGAVVSTDNKHSLSNQEIQKLVPGPPPPRQQLPGPGPTLIPSVPDVLPPGISRFPPPPPPPPDMRPPLPVIGLPGQAPPPGMMVPLIPRPPYGPPPGPPPMMRPPLPPGPPPNFQEEDHMATRPLPAPKPSYVKSAASTVVKRPLAQHTPELTSMVPASVRVRRETAMTKTKPKPSVSTVSVSTSRTVSVTPGPTILKAESVSSSSAPKAPSIDDSYTAFLEDMKALGALDG