AlfalfaGEDB | MS.gene44406

M. sativa cultivar XinJiangDaYe / MS.gene44406

KEGG: -
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00861.25

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44406.t1	XP_003592709.1	99.1	114	1	0	1	114	1	114	6.10E-51	209.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44406.t1	A8IAP8	45.7	92	49	1	21	112	29	119	5.9e-10	65.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44406.t1	G7IE75	99.1	114	1	0	1	114	1	114	4.4e-51	209.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049419	MS.gene44406	0.828952	6.75E-55	-1.69E-46
MS.gene050105	MS.gene44406	-0.819809	9.55E-53	-1.69E-46
MS.gene050361	MS.gene44406	-0.803435	3.49E-49	-1.69E-46
MS.gene050654	MS.gene44406	-0.804238	2.38E-49	-1.69E-46
MS.gene051122	MS.gene44406	-0.820309	7.34E-53	-1.69E-46
MS.gene051275	MS.gene44406	-0.807423	5.09E-50	-1.69E-46
MS.gene051856	MS.gene44406	-0.800988	1.11E-48	-1.69E-46
MS.gene05216	MS.gene44406	-0.836225	1.06E-56	-1.69E-46
MS.gene052674	MS.gene44406	-0.832805	7.67E-56	-1.69E-46
MS.gene052675	MS.gene44406	-0.831956	1.24E-55	-1.69E-46
MS.gene052677	MS.gene44406	-0.832077	1.16E-55	-1.69E-46
MS.gene054479	MS.gene44406	-0.816726	4.77E-52	-1.69E-46
MS.gene055063	MS.gene44406	0.80017	1.63E-48	-1.69E-46
MS.gene055701	MS.gene44406	-0.801447	8.97E-49	-1.69E-46
MS.gene056045	MS.gene44406	-0.800913	1.15E-48	-1.69E-46
MS.gene056064	MS.gene44406	-0.8124	4.32E-51	-1.69E-46
MS.gene056480	MS.gene44406	-0.819952	8.86E-53	-1.69E-46
MS.gene057156	MS.gene44406	0.806534	7.85E-50	-1.69E-46
MS.gene058081	MS.gene44406	-0.809832	1.56E-50	-1.69E-46
MS.gene058223	MS.gene44406	0.83474	2.52E-56	-1.69E-46
MS.gene060850	MS.gene44406	-0.824607	7.37E-54	-1.69E-46
MS.gene060851	MS.gene44406	-0.849804	2.56E-60	-1.69E-46
MS.gene060852	MS.gene44406	-0.847277	1.28E-59	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44406.t1	MTR_1g114200	99.123	114	1	1	114	1	114	2.37e-78	226
MS.gene44406.t1	MTR_4g032660	33.663	101	67	11	111	96	196	1.00e-16	72.4
MS.gene44406.t1	MTR_5g023360	70.833	48	14	1	48	46	93	2.11e-16	68.9
MS.gene44406.t1	MTR_3g012540	29.126	103	73	11	113	80	182	3.56e-13	62.8
MS.gene44406.t1	MTR_5g023330	75.000	32	8	1	32	88	119	2.47e-12	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44406.t1	AT5G27820	79.825	114	23	0	1	114	1	114	3.83e-65	192
MS.gene44406.t1	AT3G20230	35.644	101	65	0	11	111	83	183	6.97e-19	77.8
MS.gene44406.t1	AT3G45020	36.937	111	58	4	16	114	4	114	3.29e-13	61.6
MS.gene44406.t1	AT3G45020	36.937	111	58	4	16	114	4	114	3.29e-13	61.6
MS.gene44406.t1	AT3G45020	36.937	111	58	4	16	114	4	114	3.29e-13	61.6
MS.gene44406.t1	AT3G45020	36.937	111	58	4	16	114	4	114	3.29e-13	61.6
MS.gene44406.t1	AT1G08845	27.184	103	75	0	11	113	82	184	2.00e-12	60.8
MS.gene44406.t1	AT1G08845	27.184	103	75	0	11	113	82	184	2.00e-12	60.8
MS.gene44406.t1	AT1G08845	27.184	103	75	0	11	113	127	229	2.71e-12	61.2

Find 32 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTCAGATATTGTGTAAGTC+TGG	0.313396	1.1:-80235791	None:intergenic
CAACATCCCGAGTAGTTTCC+AGG	0.336475	1.1:-80235930	None:intergenic
CTGGGAGGCCTGACTGGAGG+TGG	0.388017	1.1:-80235772	None:intergenic
AAGCGGTTATTGATTCTCTC+AGG	0.400454	1.1:+80236061	MS.gene44406:CDS
GTAAGTCTGGGAGGCCTGAC+TGG	0.402204	1.1:-80235778	None:intergenic
AAATGCATCTTAAGAACATA+AGG	0.422008	1.1:-80235814	None:intergenic
GAAAGCCTTGAGATCAAGCC+TGG	0.444737	1.1:+80235912	MS.gene44406:CDS
CTCCTGTGAGCTTGCAGAAG+AGG	0.447057	1.1:-80235890	None:intergenic
ATTGATTCTCTCAGGGAAGC+TGG	0.452667	1.1:+80236069	MS.gene44406:CDS
AAGAGAGAACAGAGGTATCA+TGG	0.461247	1.1:+80236030	MS.gene44406:CDS
GTTGCTGCAGCTGCAAAGAT+TGG	0.469361	1.1:+80235949	MS.gene44406:CDS
AGTTTCCAGGCTTGATCTCA+AGG	0.483054	1.1:-80235917	None:intergenic
TGGTTATCCCACCTCCAGTC+AGG	0.492573	1.1:+80235764	MS.gene44406:CDS
TTCAGATATTGTGTAAGTCT+GGG	0.506970	1.1:-80235790	None:intergenic
TGCCTCTTCTGCAAGCTCAC+AGG	0.512391	1.1:+80235888	MS.gene44406:CDS
GAAGAGGCAACGGTAGCAGT+TGG	0.531232	1.1:-80235874	None:intergenic
GATCAAGCCTGGAAACTACT+CGG	0.540330	1.1:+80235923	MS.gene44406:CDS
AGCGGAACGCCTTTCGCTCA+AGG	0.547714	1.1:+80235981	MS.gene44406:CDS
CAGGAATGTCCTTGAGCGAA+AGG	0.550217	1.1:-80235990	None:intergenic
TTGCTGCAGCTGCAAAGATT+GGG	0.550997	1.1:+80235950	MS.gene44406:CDS
AGCGGTTATTGATTCTCTCA+GGG	0.559363	1.1:+80236062	MS.gene44406:CDS
TTCAAGTGAACAGAAACAGC+AGG	0.564698	1.1:-80236009	None:intergenic
TGGGAGGCCTGACTGGAGGT+GGG	0.577993	1.1:-80235771	None:intergenic
AGAACAGAGGTATCATGGAA+AGG	0.588862	1.1:+80236035	MS.gene44406:CDS
ATCAAGCCTGGAAACTACTC+GGG	0.593151	1.1:+80235924	MS.gene44406:CDS
AGTCTGGGAGGCCTGACTGG+AGG	0.599060	1.1:-80235775	None:intergenic
CAACGGTAGCAGTTGGAGTG+TGG	0.604975	1.1:-80235867	None:intergenic
TGAGCTTGCAGAAGAGGCAA+CGG	0.638179	1.1:-80235884	None:intergenic
AGATATTGTGTAAGTCTGGG+AGG	0.649085	1.1:-80235787	None:intergenic
GTATCATGGAAAGGTAAAAG+CGG	0.664247	1.1:+80236044	MS.gene44406:CDS
AAAGATTGGGAAGCTACTAG+CGG	0.716694	1.1:+80235963	MS.gene44406:CDS
TTCACTTGAAGAGAGAACAG+AGG	0.737493	1.1:+80236022	MS.gene44406:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AAATGCATCTTAAGAACATA+AGG	-	chr1.1:80235817-80235836	None:intergenic	25.0%
	TTCAGATATTGTGTAAGTCT+GGG	-	chr1.1:80235793-80235812	None:intergenic	30.0%
	TTTCAGATATTGTGTAAGTC+TGG	-	chr1.1:80235794-80235813	None:intergenic	30.0%
	GTATCATGGAAAGGTAAAAG+CGG	+	chr1.1:80236044-80236063	MS.gene44406:CDS	35.0%
	AAAGATTGGGAAGCTACTAG+CGG	+	chr1.1:80235963-80235982	MS.gene44406:CDS	40.0%
	AGATATTGTGTAAGTCTGGG+AGG	-	chr1.1:80235790-80235809	None:intergenic	40.0%
	TTCAAGTGAACAGAAACAGC+AGG	-	chr1.1:80236012-80236031	None:intergenic	40.0%
	TTCACTTGAAGAGAGAACAG+AGG	+	chr1.1:80236022-80236041	MS.gene44406:CDS	40.0%
!!	AAGAGAGAACAGAGGTATCA+TGG	+	chr1.1:80236030-80236049	MS.gene44406:CDS	40.0%
!!	AAGCGGTTATTGATTCTCTC+AGG	+	chr1.1:80236061-80236080	MS.gene44406:CDS	40.0%
!!	AGAACAGAGGTATCATGGAA+AGG	+	chr1.1:80236035-80236054	MS.gene44406:CDS	40.0%
!!	AGCGGTTATTGATTCTCTCA+GGG	+	chr1.1:80236062-80236081	MS.gene44406:CDS	40.0%
	AGTTTCCAGGCTTGATCTCA+AGG	-	chr1.1:80235920-80235939	None:intergenic	45.0%
	ATCAAGCCTGGAAACTACTC+GGG	+	chr1.1:80235924-80235943	MS.gene44406:CDS	45.0%
	GATCAAGCCTGGAAACTACT+CGG	+	chr1.1:80235923-80235942	MS.gene44406:CDS	45.0%
	TTGCTGCAGCTGCAAAGATT+GGG	+	chr1.1:80235950-80235969	MS.gene44406:CDS	45.0%
!	ATTGATTCTCTCAGGGAAGC+TGG	+	chr1.1:80236069-80236088	MS.gene44406:CDS	45.0%
	CAACATCCCGAGTAGTTTCC+AGG	-	chr1.1:80235933-80235952	None:intergenic	50.0%
	CAGGAATGTCCTTGAGCGAA+AGG	-	chr1.1:80235993-80236012	None:intergenic	50.0%
	GAAAGCCTTGAGATCAAGCC+TGG	+	chr1.1:80235912-80235931	MS.gene44406:CDS	50.0%
	GTTGCTGCAGCTGCAAAGAT+TGG	+	chr1.1:80235949-80235968	MS.gene44406:CDS	50.0%
	TGAGCTTGCAGAAGAGGCAA+CGG	-	chr1.1:80235887-80235906	None:intergenic	50.0%
	CAACGGTAGCAGTTGGAGTG+TGG	-	chr1.1:80235870-80235889	None:intergenic	55.0%
	CTCCTGTGAGCTTGCAGAAG+AGG	-	chr1.1:80235893-80235912	None:intergenic	55.0%
	GAAGAGGCAACGGTAGCAGT+TGG	-	chr1.1:80235877-80235896	None:intergenic	55.0%
	TGCCTCTTCTGCAAGCTCAC+AGG	+	chr1.1:80235888-80235907	MS.gene44406:CDS	55.0%
	TGGTTATCCCACCTCCAGTC+AGG	+	chr1.1:80235764-80235783	MS.gene44406:CDS	55.0%
	AGCGGAACGCCTTTCGCTCA+AGG	+	chr1.1:80235981-80236000	MS.gene44406:CDS	60.0%
	GTAAGTCTGGGAGGCCTGAC+TGG	-	chr1.1:80235781-80235800	None:intergenic	60.0%
	AGTCTGGGAGGCCTGACTGG+AGG	-	chr1.1:80235778-80235797	None:intergenic	65.0%
	TGGGAGGCCTGACTGGAGGT+GGG	-	chr1.1:80235774-80235793	None:intergenic	65.0%
	CTGGGAGGCCTGACTGGAGG+TGG	-	chr1.1:80235775-80235794	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	80235763	80236107	80235763	ID=MS.gene44406
chr1.1	mRNA	80235763	80236107	80235763	ID=MS.gene44406.t1;Parent=MS.gene44406
chr1.1	exon	80235763	80236107	80235763	ID=MS.gene44406.t1.exon1;Parent=MS.gene44406.t1
chr1.1	CDS	80235763	80236107	80235763	ID=cds.MS.gene44406.t1;Parent=MS.gene44406.t1

Gene Sequence	>MS.gene44406 ATGGTTATCCCACCTCCAGTCAGGCCTCCCAGACTTACACAATATCTGAAACCTTATGTTCTTAAGATGCATTTCACAAATAAGTATGTGAGTGCTCAAGTGATCCACACTCCAACTGCTACCGTTGCCTCTTCTGCAAGCTCACAGGAGAAAGCCTTGAGATCAAGCCTGGAAACTACTCGGGATGTTGCTGCAGCTGCAAAGATTGGGAAGCTACTAGCGGAACGCCTTTCGCTCAAGGACATTCCTGCTGTTTCTGTTCACTTGAAGAGAGAACAGAGGTATCATGGAAAGGTAAAAGCGGTTATTGATTCTCTCAGGGAAGCTGGTGTTAAGTTGCTTTGA
Protein sequence	>MS.gene44406.t1 MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHTPTATVASSASSQEKALRSSLETTRDVAAAAKIGKLLAERLSLKDIPAVSVHLKREQRYHGKVKAVIDSLREAGVKLL