Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44462.t1 | XP_003608530.1 | 92.3 | 468 | 32 | 3 | 1 | 467 | 1 | 465 | 3.80E-264 | 920.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44462.t1 | G7JE26 | 92.3 | 468 | 32 | 3 | 1 | 467 | 1 | 465 | 2.7e-264 | 920.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene44462 | -0.803639 | 3.17E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene44462 | -0.817622 | 3.00E-52 | -1.69E-46 |
| MS.gene050323 | MS.gene44462 | -0.815918 | 7.23E-52 | -1.69E-46 |
| MS.gene05080 | MS.gene44462 | -0.814204 | 1.74E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene44462 | -0.85289 | 3.43E-61 | -1.69E-46 |
| MS.gene050871 | MS.gene44462 | -0.854036 | 1.61E-61 | -1.69E-46 |
| MS.gene051138 | MS.gene44462 | 0.803832 | 2.89E-49 | -1.69E-46 |
| MS.gene051268 | MS.gene44462 | -0.807304 | 5.40E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene44462 | -0.814805 | 1.28E-51 | -1.69E-46 |
| MS.gene051863 | MS.gene44462 | 0.808294 | 3.32E-50 | -1.69E-46 |
| MS.gene051874 | MS.gene44462 | -0.802438 | 5.61E-49 | -1.69E-46 |
| MS.gene052164 | MS.gene44462 | -0.827971 | 1.17E-54 | -1.69E-46 |
| MS.gene053479 | MS.gene44462 | -0.800501 | 1.40E-48 | -1.69E-46 |
| MS.gene053626 | MS.gene44462 | -0.80034 | 1.51E-48 | -1.69E-46 |
| MS.gene053824 | MS.gene44462 | -0.82387 | 1.10E-53 | -1.69E-46 |
| MS.gene053916 | MS.gene44462 | -0.808605 | 2.85E-50 | -1.69E-46 |
| MS.gene054003 | MS.gene44462 | -0.809417 | 1.91E-50 | -1.69E-46 |
| MS.gene054706 | MS.gene44462 | 0.834102 | 3.64E-56 | -1.69E-46 |
| MS.gene05470 | MS.gene44462 | -0.811737 | 6.03E-51 | -1.69E-46 |
| MS.gene05494 | MS.gene44462 | -0.823574 | 1.29E-53 | -1.69E-46 |
| MS.gene055577 | MS.gene44462 | -0.812697 | 3.72E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene44462 | -0.826301 | 2.92E-54 | -1.69E-46 |
| MS.gene056166 | MS.gene44462 | -0.800696 | 1.28E-48 | -1.69E-46 |
| MS.gene056330 | MS.gene44462 | 0.806153 | 9.45E-50 | -1.69E-46 |
| MS.gene056387 | MS.gene44462 | -0.867062 | 1.81E-65 | -1.69E-46 |
| MS.gene056504 | MS.gene44462 | -0.813128 | 2.99E-51 | -1.69E-46 |
| MS.gene057086 | MS.gene44462 | -0.819304 | 1.25E-52 | -1.69E-46 |
| MS.gene05787 | MS.gene44462 | -0.827743 | 1.32E-54 | -1.69E-46 |
| MS.gene058157 | MS.gene44462 | -0.82228 | 2.58E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene44462 | -0.801802 | 7.58E-49 | -1.69E-46 |
| MS.gene059045 | MS.gene44462 | 0.807242 | 5.56E-50 | -1.69E-46 |
| MS.gene05926 | MS.gene44462 | 0.810062 | 1.39E-50 | -1.69E-46 |
| MS.gene059367 | MS.gene44462 | -0.802303 | 5.98E-49 | -1.69E-46 |
| MS.gene059699 | MS.gene44462 | 0.811128 | 8.18E-51 | -1.69E-46 |
| MS.gene059703 | MS.gene44462 | 0.820939 | 5.26E-53 | -1.69E-46 |
| MS.gene06000 | MS.gene44462 | -0.822808 | 1.94E-53 | -1.69E-46 |
| MS.gene060762 | MS.gene44462 | -0.801077 | 1.07E-48 | -1.69E-46 |
| MS.gene060778 | MS.gene44462 | -0.819411 | 1.18E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene44462 | -0.810107 | 1.36E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44462.t1 | MTR_4g097110 | 92.308 | 468 | 32 | 3 | 1 | 467 | 1 | 465 | 0.0 | 870 |
| MS.gene44462.t1 | MTR_5g015460 | 66.457 | 477 | 144 | 7 | 1 | 468 | 1 | 470 | 0.0 | 646 |
| MS.gene44462.t1 | MTR_5g015460 | 71.533 | 411 | 107 | 4 | 63 | 468 | 62 | 467 | 0.0 | 630 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44462.t1 | AT3G49880 | 63.617 | 470 | 145 | 7 | 3 | 461 | 4 | 458 | 0.0 | 606 |
| MS.gene44462.t1 | AT5G67540 | 62.260 | 469 | 149 | 8 | 12 | 461 | 12 | 471 | 0.0 | 591 |
| MS.gene44462.t1 | AT5G67540 | 62.260 | 469 | 149 | 8 | 12 | 461 | 34 | 493 | 0.0 | 591 |
| MS.gene44462.t1 | AT5G67540 | 62.553 | 470 | 145 | 10 | 12 | 461 | 8 | 466 | 0.0 | 590 |
Find 94 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCAGCTGAGACAATCTT+AGG | 0.186965 | 8.1:+25349685 | MS.gene44462:CDS |
| AAATTTCAAATACTTATTAT+TGG | 0.207042 | 8.1:+25348278 | MS.gene44462:CDS |
| TCCTGGTTTGTTTATCTTCA+TGG | 0.221019 | 8.1:+25349810 | MS.gene44462:CDS |
| CTATGTCACTAGTAATAATA+TGG | 0.224189 | 8.1:+25347876 | MS.gene44462:CDS |
| ACTGCTACCCTGGGAGAATT+TGG | 0.230166 | 8.1:+25348200 | MS.gene44462:CDS |
| GCTATTCTTCTAAGGATCTA+TGG | 0.248673 | 8.1:+25349182 | MS.gene44462:CDS |
| TTGCAACGAAAATTAGTAAT+TGG | 0.249064 | 8.1:-25347833 | None:intergenic |
| ACCATTGGTTGATGAATTCT+TGG | 0.278506 | 8.1:+25348078 | MS.gene44462:CDS |
| TTTCAACTTGTTGGAGTTGA+TGG | 0.278724 | 8.1:-25347994 | None:intergenic |
| GGCCAAGAGTTTCTATCTAT+TGG | 0.280101 | 8.1:+25349944 | MS.gene44462:CDS |
| CTTCCTTTACCTAAGTTTCC+TGG | 0.285443 | 8.1:+25349793 | MS.gene44462:CDS |
| TTTGATATCCATGCGGTCTT+TGG | 0.289529 | 8.1:-25349423 | None:intergenic |
| AGTTGGTTGCTATTCTTCTA+AGG | 0.296029 | 8.1:+25349174 | MS.gene44462:CDS |
| ATATGGGGTTTATTAATCTT+AGG | 0.298477 | 8.1:+25347893 | MS.gene44462:CDS |
| TTCACATTGTAAATAACTTT+TGG | 0.303781 | 8.1:-25349289 | None:intergenic |
| ATTGATCCAATGAAGACTAT+AGG | 0.340719 | 8.1:+25348151 | MS.gene44462:CDS |
| CCTTTCCCTATAGTCTTCAT+TGG | 0.349246 | 8.1:-25348157 | None:intergenic |
| GAAGATCAAGCACTTCAATA+TGG | 0.356355 | 8.1:+25349904 | MS.gene44462:CDS |
| CTCCATCAGGTGGACATTAT+AGG | 0.359766 | 8.1:+25349151 | MS.gene44462:intron |
| TGGTTGCCTTTGATTGTTGA+TGG | 0.375658 | 8.1:+25349877 | MS.gene44462:CDS |
| TTATCTTCATGGCGGATAGA+TGG | 0.376808 | 8.1:+25349821 | MS.gene44462:CDS |
| TAAGAGATTCAAGATATGTT+TGG | 0.401561 | 8.1:+25349857 | MS.gene44462:CDS |
| TTGATCCAATGAAGACTATA+GGG | 0.410737 | 8.1:+25348152 | MS.gene44462:CDS |
| CTTGAATCTCTTAACTCACT+TGG | 0.414129 | 8.1:-25349847 | None:intergenic |
| CCTTTGTGTTTGAACATAGC+CGG | 0.433704 | 8.1:-25349604 | None:intergenic |
| TCAAATACTTATTATTGGTA+TGG | 0.434316 | 8.1:+25348283 | MS.gene44462:CDS |
| AGGAGGATGAATGATATTGA+AGG | 0.445423 | 8.1:-25347954 | None:intergenic |
| TTAGGGACATGGGAAACAAT+TGG | 0.448046 | 8.1:+25349703 | MS.gene44462:CDS |
| TTATTATGAGCAAGGTAAGT+AGG | 0.456459 | 8.1:-25348322 | None:intergenic |
| TATGTCACTAGTAATAATAT+GGG | 0.459282 | 8.1:+25347877 | MS.gene44462:CDS |
| ATAAACAAACCAGGAAACTT+AGG | 0.469675 | 8.1:-25349802 | None:intergenic |
| CACCCTCCATGAGCTTGAAT+AGG | 0.470225 | 8.1:-25348241 | None:intergenic |
| AGTTATAATTACTGCTACCC+TGG | 0.470470 | 8.1:+25348190 | MS.gene44462:CDS |
| TCAACTCCAACAAGTTGAAA+AGG | 0.485321 | 8.1:+25347997 | MS.gene44462:CDS |
| GATATTTGAATGAACCGATA+GGG | 0.497833 | 8.1:-25349393 | None:intergenic |
| ACATATTACATGGTTACATC+AGG | 0.501941 | 8.1:+25349628 | MS.gene44462:CDS |
| GTCCTTTGTTATTATGAGCA+AGG | 0.505074 | 8.1:-25348330 | None:intergenic |
| GGAAATCCTATTCAAGCTCA+TGG | 0.506131 | 8.1:+25348235 | MS.gene44462:CDS |
| CAGGTGGACATTATAGGAGT+TGG | 0.509259 | 8.1:+25349157 | MS.gene44462:intron |
| CTACCCTGGGAGAATTTGGT+TGG | 0.510007 | 8.1:+25348204 | MS.gene44462:CDS |
| GAATGAACAAGTGCTTCATT+TGG | 0.511215 | 8.1:-25349667 | None:intergenic |
| ATGGTTACATCAGGTTGCAC+TGG | 0.512390 | 8.1:+25349637 | MS.gene44462:CDS |
| GACCGCATGGATATCAAAGC+CGG | 0.513956 | 8.1:+25349428 | MS.gene44462:CDS |
| AATGGAAACTGCCTTTGGGT+TGG | 0.518583 | 8.1:+25349974 | MS.gene44462:CDS |
| CTGAGACAATCTTAGGGACA+TGG | 0.522359 | 8.1:+25349692 | MS.gene44462:CDS |
| ATCGGTTCATTCAAATATCT+CGG | 0.526099 | 8.1:+25349397 | MS.gene44462:CDS |
| TTACATCAGGTTGCACTGGA+TGG | 0.529710 | 8.1:+25349641 | MS.gene44462:CDS |
| TATTATGAGCAAGGTAAGTA+GGG | 0.532830 | 8.1:-25348321 | None:intergenic |
| AAACCAGGAAACTTAGGTAA+AGG | 0.536263 | 8.1:-25349796 | None:intergenic |
| TACATCAGGTTGCACTGGAT+GGG | 0.537898 | 8.1:+25349642 | MS.gene44462:CDS |
| CTTTGAAAAGTGTCATGTCC+CGG | 0.538558 | 8.1:-25349447 | None:intergenic |
| AGAATTTGGTTGGATACTGA+TGG | 0.538862 | 8.1:+25348214 | MS.gene44462:CDS |
| GGTGTTATTGACTTGCTTTG+AGG | 0.541852 | 8.1:-25348058 | None:intergenic |
| TGCCAATAGATAGAAACTCT+TGG | 0.542445 | 8.1:-25349946 | None:intergenic |
| TGGAAATGAGAAGGAAGAGA+AGG | 0.543749 | 8.1:-25347974 | None:intergenic |
| TGGTATGGTGAATATAAAGA+TGG | 0.548966 | 8.1:+25348298 | MS.gene44462:CDS |
| AAATGAGAAGGAAGAGAAGG+AGG | 0.550677 | 8.1:-25347971 | None:intergenic |
| TCATGTCCATCAACAATCAA+AGG | 0.551449 | 8.1:-25349883 | None:intergenic |
| ATTGGAAATCCATGTGTTGG+TGG | 0.555806 | 8.1:+25349721 | MS.gene44462:CDS |
| AAGCAAGTCAATAACACCAT+TGG | 0.559003 | 8.1:+25348063 | MS.gene44462:CDS |
| ATTCAGCTGAGACAATCTTA+GGG | 0.560376 | 8.1:+25349686 | MS.gene44462:CDS |
| CTTCTAAGGATCTATGGACC+TGG | 0.567240 | 8.1:+25349188 | MS.gene44462:CDS |
| TGAAAGTGACTTACACGAGC+AGG | 0.573417 | 8.1:-25348352 | None:intergenic |
| CTCGGTAGCCAAAGACCGCA+TGG | 0.575540 | 8.1:+25349415 | MS.gene44462:CDS |
| GTTATAATTACTGCTACCCT+GGG | 0.579486 | 8.1:+25348191 | MS.gene44462:CDS |
| GTATCCAACCAAATTCTCCC+AGG | 0.580663 | 8.1:-25348208 | None:intergenic |
| TTGAGATAATCTTCAGTCAA+GGG | 0.584839 | 8.1:-25349532 | None:intergenic |
| AGGATGAATGATATTGAAGG+AGG | 0.591474 | 8.1:-25347951 | None:intergenic |
| TTGAATGTGTTCCAACCCAA+AGG | 0.592407 | 8.1:-25349985 | None:intergenic |
| ATTGAGATAATCTTCAGTCA+AGG | 0.592919 | 8.1:-25349533 | None:intergenic |
| GAAAACAATGTAATGCACAT+TGG | 0.594015 | 8.1:+25349508 | MS.gene44462:CDS |
| ACCGCATGGATATCAAAGCC+GGG | 0.595132 | 8.1:+25349429 | MS.gene44462:CDS |
| CGGTCAGCGAAGAGAAGCGC+CGG | 0.596526 | 8.1:+25349585 | MS.gene44462:CDS |
| GCATTCAGTGATACCCCTAT+CGG | 0.598117 | 8.1:+25349379 | MS.gene44462:CDS |
| CCAATGAAGACTATAGGGAA+AGG | 0.603987 | 8.1:+25348157 | MS.gene44462:CDS |
| ATCACTGAATGCTATGCCGA+CGG | 0.605142 | 8.1:-25349368 | None:intergenic |
| TACCTTGCTCATAATAACAA+AGG | 0.607221 | 8.1:+25348328 | MS.gene44462:CDS |
| ACACAAAGGAACATATTACA+TGG | 0.610656 | 8.1:+25349618 | MS.gene44462:CDS |
| ATCCTATTCAAGCTCATGGA+GGG | 0.611296 | 8.1:+25348239 | MS.gene44462:CDS |
| AGATATTTGAATGAACCGAT+AGG | 0.615462 | 8.1:-25349394 | None:intergenic |
| TGAGACAATCTTAGGGACAT+GGG | 0.620421 | 8.1:+25349693 | MS.gene44462:CDS |
| ATATTTGAATGAACCGATAG+GGG | 0.620423 | 8.1:-25349392 | None:intergenic |
| TCCAAGAATTCATCAACCAA+TGG | 0.620834 | 8.1:-25348079 | None:intergenic |
| TGGAGTTGATGGAAATGAGA+AGG | 0.629494 | 8.1:-25347983 | None:intergenic |
| AAACAAGAAAGTATGTGATG+TGG | 0.634502 | 8.1:+25349311 | MS.gene44462:CDS |
| ACAATTGGAAATCCATGTGT+TGG | 0.635790 | 8.1:+25349718 | MS.gene44462:CDS |
| ATGTCACTAGTAATAATATG+GGG | 0.640588 | 8.1:+25347878 | MS.gene44462:CDS |
| TGGTTTGTTTATCTTCATGG+CGG | 0.648154 | 8.1:+25349813 | MS.gene44462:CDS |
| TATCCAACCAAATTCTCCCA+GGG | 0.669311 | 8.1:-25348207 | None:intergenic |
| CCGGCTATGTTCAAACACAA+AGG | 0.678714 | 8.1:+25349604 | MS.gene44462:CDS |
| AATTACGCAAAAGCTTCCGT+CGG | 0.686419 | 8.1:+25349352 | MS.gene44462:CDS |
| AATCCTATTCAAGCTCATGG+AGG | 0.687704 | 8.1:+25348238 | MS.gene44462:CDS |
| GCCATGAAGATAAACAAACC+AGG | 0.690008 | 8.1:-25349811 | None:intergenic |
| TCCCGGCTTTGATATCCATG+CGG | 0.711426 | 8.1:-25349430 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTCAAATACTTATTAT+TGG | + | chr8.1:25348278-25348297 | MS.gene44462:CDS | 10.0% |
| !! | GTAAAATGTAAGTTATAATA+AGG | - | chr8.1:25348572-25348591 | None:intergenic | 15.0% |
| !! | AGAGCTTATAAAAATAAGTA+AGG | - | chr8.1:25348528-25348547 | None:intergenic | 20.0% |
| !! | ATGAAAAGAACATTTGATAT+GGG | - | chr8.1:25348714-25348733 | None:intergenic | 20.0% |
| !! | TAACATACTTCTATAACAAA+AGG | - | chr8.1:25348594-25348613 | None:intergenic | 20.0% |
| !! | TATGTCACTAGTAATAATAT+GGG | + | chr8.1:25347877-25347896 | MS.gene44462:CDS | 20.0% |
| !! | TCAAATACTTATTATTGGTA+TGG | + | chr8.1:25348283-25348302 | MS.gene44462:CDS | 20.0% |
| !!! | ATTAAGTTGTTTATTCAATC+AGG | + | chr8.1:25348643-25348662 | MS.gene44462:intron | 20.0% |
| !!! | TTAAGTTGTTTATTCAATCA+GGG | + | chr8.1:25348644-25348663 | MS.gene44462:intron | 20.0% |
| !!! | TTCACATTGTAAATAACTTT+TGG | - | chr8.1:25349292-25349311 | None:intergenic | 20.0% |
| ! | AACCATAAGAAACTTTGAAT+TGG | - | chr8.1:25348737-25348756 | None:intergenic | 25.0% |
| ! | ATATGGGGTTTATTAATCTT+AGG | + | chr8.1:25347893-25347912 | MS.gene44462:CDS | 25.0% |
| ! | ATCCAATTCAAAGTTTCTTA+TGG | + | chr8.1:25348732-25348751 | MS.gene44462:intron | 25.0% |
| ! | ATGTCACTAGTAATAATATG+GGG | + | chr8.1:25347878-25347897 | MS.gene44462:CDS | 25.0% |
| ! | CCAAAAACTTCAATTGATAA+TGG | - | chr8.1:25348957-25348976 | None:intergenic | 25.0% |
| ! | CTATCTATTGGCATAAAAAA+TGG | + | chr8.1:25349956-25349975 | MS.gene44462:CDS | 25.0% |
| ! | CTATGTCACTAGTAATAATA+TGG | + | chr8.1:25347876-25347895 | MS.gene44462:CDS | 25.0% |
| ! | GATGAAAAGAACATTTGATA+TGG | - | chr8.1:25348715-25348734 | None:intergenic | 25.0% |
| ! | GGAAATTGTATTTGTTTCAT+AGG | + | chr8.1:25348980-25348999 | MS.gene44462:intron | 25.0% |
| ! | TAAGAGATTCAAGATATGTT+TGG | + | chr8.1:25349857-25349876 | MS.gene44462:CDS | 25.0% |
| ! | TTGCAACGAAAATTAGTAAT+TGG | - | chr8.1:25347836-25347855 | None:intergenic | 25.0% |
| !! | AAGTAAGGTTAAAAAGCATA+TGG | - | chr8.1:25348513-25348532 | None:intergenic | 25.0% |
| !! | ATCAAATGCAAATACTGTTT+TGG | + | chr8.1:25349097-25349116 | MS.gene44462:intron | 25.0% |
| !! | CCATTATCAATTGAAGTTTT+TGG | + | chr8.1:25348954-25348973 | MS.gene44462:intron | 25.0% |
| !!! | AAAACTTCAATTGATAATGG+TGG | - | chr8.1:25348954-25348973 | None:intergenic | 25.0% |
| !!! | ATGGTTTTGATAACACATTT+TGG | + | chr8.1:25349923-25349942 | MS.gene44462:CDS | 25.0% |
| !!! | CTTATTTTTATAAGCTCTTC+AGG | + | chr8.1:25348530-25348549 | MS.gene44462:intron | 25.0% |
| AAAAAATGGAAACTGCCTTT+GGG | + | chr8.1:25349970-25349989 | MS.gene44462:CDS | 30.0% | |
| ACACAAAGGAACATATTACA+TGG | + | chr8.1:25349618-25349637 | MS.gene44462:CDS | 30.0% | |
| ACATATTACATGGTTACATC+AGG | + | chr8.1:25349628-25349647 | MS.gene44462:CDS | 30.0% | |
| AGATATTTGAATGAACCGAT+AGG | - | chr8.1:25349397-25349416 | None:intergenic | 30.0% | |
| ATAAACAAACCAGGAAACTT+AGG | - | chr8.1:25349805-25349824 | None:intergenic | 30.0% | |
| ATATTTGAATGAACCGATAG+GGG | - | chr8.1:25349395-25349414 | None:intergenic | 30.0% | |
| ATTGAGATAATCTTCAGTCA+AGG | - | chr8.1:25349536-25349555 | None:intergenic | 30.0% | |
| ATTGATCCAATGAAGACTAT+AGG | + | chr8.1:25348151-25348170 | MS.gene44462:CDS | 30.0% | |
| GAAAACAATGTAATGCACAT+TGG | + | chr8.1:25349508-25349527 | MS.gene44462:CDS | 30.0% | |
| GATATTTGAATGAACCGATA+GGG | - | chr8.1:25349396-25349415 | None:intergenic | 30.0% | |
| TAAAAAATGGAAACTGCCTT+TGG | + | chr8.1:25349969-25349988 | MS.gene44462:CDS | 30.0% | |
| TACCTTGCTCATAATAACAA+AGG | + | chr8.1:25348328-25348347 | MS.gene44462:CDS | 30.0% | |
| TATTATGAGCAAGGTAAGTA+GGG | - | chr8.1:25348324-25348343 | None:intergenic | 30.0% | |
| TGGTATGGTGAATATAAAGA+TGG | + | chr8.1:25348298-25348317 | MS.gene44462:CDS | 30.0% | |
| TTATCTACTGACATGAATAC+CGG | + | chr8.1:25348444-25348463 | MS.gene44462:intron | 30.0% | |
| TTATTATGAGCAAGGTAAGT+AGG | - | chr8.1:25348325-25348344 | None:intergenic | 30.0% | |
| TTGAGATAATCTTCAGTCAA+GGG | - | chr8.1:25349535-25349554 | None:intergenic | 30.0% | |
| TTGATCCAATGAAGACTATA+GGG | + | chr8.1:25348152-25348171 | MS.gene44462:CDS | 30.0% | |
| TTTGTTTCATAGGACTAATG+TGG | + | chr8.1:25348990-25349009 | MS.gene44462:intron | 30.0% | |
| ! | AAACAAGAAAGTATGTGATG+TGG | + | chr8.1:25349311-25349330 | MS.gene44462:CDS | 30.0% |
| ! | ATCGGTTCATTCAAATATCT+CGG | + | chr8.1:25349397-25349416 | MS.gene44462:CDS | 30.0% |
| ! | GTCATGAAAAGAATTTTCGT+CGG | + | chr8.1:25349565-25349584 | MS.gene44462:CDS | 30.0% |
| ! | TGAGATATAGACTAGAGTTT+TGG | - | chr8.1:25349123-25349142 | None:intergenic | 30.0% |
| !!! | ATCAATTGAAGTTTTTGGCA+GGG | + | chr8.1:25348959-25348978 | MS.gene44462:intron | 30.0% |
| !!! | TACAATACCTTCTTTTTTCC+AGG | - | chr8.1:25349209-25349228 | None:intergenic | 30.0% |
| !!! | TATCAATTGAAGTTTTTGGC+AGG | + | chr8.1:25348958-25348977 | MS.gene44462:intron | 30.0% |
| !!! | TCAATAGCACTTGTTTTATG+AGG | - | chr8.1:25348136-25348155 | None:intergenic | 30.0% |
| AAACCAGGAAACTTAGGTAA+AGG | - | chr8.1:25349799-25349818 | None:intergenic | 35.0% | |
| AAAGCATATGGACATGTCAT+AGG | - | chr8.1:25348501-25348520 | None:intergenic | 35.0% | |
| AAGCAAGTCAATAACACCAT+TGG | + | chr8.1:25348063-25348082 | MS.gene44462:CDS | 35.0% | |
| ACAATTGGAAATCCATGTGT+TGG | + | chr8.1:25349718-25349737 | MS.gene44462:CDS | 35.0% | |
| AGAATTTGGTTGGATACTGA+TGG | + | chr8.1:25348214-25348233 | MS.gene44462:CDS | 35.0% | |
| AGACATTGGAATTGCTCAAT+TGG | - | chr8.1:25348903-25348922 | None:intergenic | 35.0% | |
| AGGAGGATGAATGATATTGA+AGG | - | chr8.1:25347957-25347976 | None:intergenic | 35.0% | |
| AGGATGAATGATATTGAAGG+AGG | - | chr8.1:25347954-25347973 | None:intergenic | 35.0% | |
| AGTTATAATTACTGCTACCC+TGG | + | chr8.1:25348190-25348209 | MS.gene44462:CDS | 35.0% | |
| ATTCAGCTGAGACAATCTTA+GGG | + | chr8.1:25349686-25349705 | MS.gene44462:CDS | 35.0% | |
| CTTGAATCTCTTAACTCACT+TGG | - | chr8.1:25349850-25349869 | None:intergenic | 35.0% | |
| GAAGATCAAGCACTTCAATA+TGG | + | chr8.1:25349904-25349923 | MS.gene44462:CDS | 35.0% | |
| GAATGAACAAGTGCTTCATT+TGG | - | chr8.1:25349670-25349689 | None:intergenic | 35.0% | |
| GTTATAATTACTGCTACCCT+GGG | + | chr8.1:25348191-25348210 | MS.gene44462:CDS | 35.0% | |
| TAGTTCAGAACTCAAGACAT+TGG | - | chr8.1:25348917-25348936 | None:intergenic | 35.0% | |
| TATAAACTCCTACAACCAAC+TGG | - | chr8.1:25348682-25348701 | None:intergenic | 35.0% | |
| TCATGTCCATCAACAATCAA+AGG | - | chr8.1:25349886-25349905 | None:intergenic | 35.0% | |
| TCCAAGAATTCATCAACCAA+TGG | - | chr8.1:25348082-25348101 | None:intergenic | 35.0% | |
| TGCCAATAGATAGAAACTCT+TGG | - | chr8.1:25349949-25349968 | None:intergenic | 35.0% | |
| ! | AGTTCTCCTTTTCAACTTGT+TGG | - | chr8.1:25348006-25348025 | None:intergenic | 35.0% |
| ! | AGTTGGTTGCTATTCTTCTA+AGG | + | chr8.1:25349174-25349193 | MS.gene44462:CDS | 35.0% |
| ! | GCTATTCTTCTAAGGATCTA+TGG | + | chr8.1:25349182-25349201 | MS.gene44462:CDS | 35.0% |
| ! | TCAACTCCAACAAGTTGAAA+AGG | + | chr8.1:25347997-25348016 | MS.gene44462:CDS | 35.0% |
| !! | ACCATTGGTTGATGAATTCT+TGG | + | chr8.1:25348078-25348097 | MS.gene44462:CDS | 35.0% |
| !! | ATTTTGTTTCCACCAACACA+TGG | - | chr8.1:25349733-25349752 | None:intergenic | 35.0% |
| !! | GTCCTTTGTTATTATGAGCA+AGG | - | chr8.1:25348333-25348352 | None:intergenic | 35.0% |
| !! | TCAATTGATAATGGTGGTGA+TGG | - | chr8.1:25348948-25348967 | None:intergenic | 35.0% |
| !! | TCCTGGTTTGTTTATCTTCA+TGG | + | chr8.1:25349810-25349829 | MS.gene44462:CDS | 35.0% |
| !! | TGGTTTGTTTATCTTCATGG+CGG | + | chr8.1:25349813-25349832 | MS.gene44462:CDS | 35.0% |
| !! | TTTCAACTTGTTGGAGTTGA+TGG | - | chr8.1:25347997-25348016 | None:intergenic | 35.0% |
| AAATGAGAAGGAAGAGAAGG+AGG | - | chr8.1:25347974-25347993 | None:intergenic | 40.0% | |
| AATCCTATTCAAGCTCATGG+AGG | + | chr8.1:25348238-25348257 | MS.gene44462:CDS | 40.0% | |
| AATTACGCAAAAGCTTCCGT+CGG | + | chr8.1:25349352-25349371 | MS.gene44462:CDS | 40.0% | |
| ACATGTCTAGATAGCTAGCT+TGG | - | chr8.1:25348859-25348878 | None:intergenic | 40.0% | |
| AGACTATTTGAGAGAGCTCA+TGG | + | chr8.1:25348469-25348488 | MS.gene44462:intron | 40.0% | |
| ATCCTATTCAAGCTCATGGA+GGG | + | chr8.1:25348239-25348258 | MS.gene44462:CDS | 40.0% | |
| ATTGGAAATCCATGTGTTGG+TGG | + | chr8.1:25349721-25349740 | MS.gene44462:CDS | 40.0% | |
| CATTCAGCTGAGACAATCTT+AGG | + | chr8.1:25349685-25349704 | MS.gene44462:CDS | 40.0% | |
| CCAATGAAGACTATAGGGAA+AGG | + | chr8.1:25348157-25348176 | MS.gene44462:CDS | 40.0% | |
| CCTTTCCCTATAGTCTTCAT+TGG | - | chr8.1:25348160-25348179 | None:intergenic | 40.0% | |
| CCTTTGTGTTTGAACATAGC+CGG | - | chr8.1:25349607-25349626 | None:intergenic | 40.0% | |
| CTATGGACCTGGAAAAAAGA+AGG | + | chr8.1:25349199-25349218 | MS.gene44462:CDS | 40.0% | |
| CTTCCTTTACCTAAGTTTCC+TGG | + | chr8.1:25349793-25349812 | MS.gene44462:CDS | 40.0% | |
| GCCATGAAGATAAACAAACC+AGG | - | chr8.1:25349814-25349833 | None:intergenic | 40.0% | |
| GGAAATCCTATTCAAGCTCA+TGG | + | chr8.1:25348235-25348254 | MS.gene44462:CDS | 40.0% | |
| GGCCAAGAGTTTCTATCTAT+TGG | + | chr8.1:25349944-25349963 | MS.gene44462:CDS | 40.0% | |
| TATCCAACCAAATTCTCCCA+GGG | - | chr8.1:25348210-25348229 | None:intergenic | 40.0% | |
| TGAGACAATCTTAGGGACAT+GGG | + | chr8.1:25349693-25349712 | MS.gene44462:CDS | 40.0% | |
| TGGAAATGAGAAGGAAGAGA+AGG | - | chr8.1:25347977-25347996 | None:intergenic | 40.0% | |
| TGGTTGCCTTTGATTGTTGA+TGG | + | chr8.1:25349877-25349896 | MS.gene44462:CDS | 40.0% | |
| TTAGGGACATGGGAAACAAT+TGG | + | chr8.1:25349703-25349722 | MS.gene44462:CDS | 40.0% | |
| TTGAATGTGTTCCAACCCAA+AGG | - | chr8.1:25349988-25350007 | None:intergenic | 40.0% | |
| TTTGATATCCATGCGGTCTT+TGG | - | chr8.1:25349426-25349445 | None:intergenic | 40.0% | |
| ! | ACTAATTTTCGTTGCAACGC+TGG | + | chr8.1:25347839-25347858 | MS.gene44462:CDS | 40.0% |
| ! | AGCTAGCTTGGGGAAAATAA+GGG | - | chr8.1:25348847-25348866 | None:intergenic | 40.0% |
| ! | ATGTCTAGATAGCTAGCTTG+GGG | - | chr8.1:25348857-25348876 | None:intergenic | 40.0% |
| ! | CATGTCTAGATAGCTAGCTT+GGG | - | chr8.1:25348858-25348877 | None:intergenic | 40.0% |
| ! | TAGCTAGCTTGGGGAAAATA+AGG | - | chr8.1:25348848-25348867 | None:intergenic | 40.0% |
| ! | TGAGGTGACCTCTTTTTGTT+TGG | - | chr8.1:25348043-25348062 | None:intergenic | 40.0% |
| ! | TTTTGGTCTCTCAAGCACAT+TGG | - | chr8.1:25349275-25349294 | None:intergenic | 40.0% |
| !! | CTTTGAAAAGTGTCATGTCC+CGG | - | chr8.1:25349450-25349469 | None:intergenic | 40.0% |
| !! | GGTGTTATTGACTTGCTTTG+AGG | - | chr8.1:25348061-25348080 | None:intergenic | 40.0% |
| !! | GTGACCTCTTTTTGTTTGGT+GGG | - | chr8.1:25348039-25348058 | None:intergenic | 40.0% |
| !! | TGACCTCTTTTTGTTTGGTG+GGG | - | chr8.1:25348038-25348057 | None:intergenic | 40.0% |
| !! | TGGAGTTGATGGAAATGAGA+AGG | - | chr8.1:25347986-25348005 | None:intergenic | 40.0% |
| !! | TTATCTTCATGGCGGATAGA+TGG | + | chr8.1:25349821-25349840 | MS.gene44462:CDS | 40.0% |
| AACTCCTACAACCAACTGGT+AGG | - | chr8.1:25348678-25348697 | None:intergenic | 45.0% | |
| AATGGAAACTGCCTTTGGGT+TGG | + | chr8.1:25349974-25349993 | MS.gene44462:CDS | 45.0% | |
| ATCACTGAATGCTATGCCGA+CGG | - | chr8.1:25349371-25349390 | None:intergenic | 45.0% | |
| CAGGTGGACATTATAGGAGT+TGG | + | chr8.1:25349157-25349176 | MS.gene44462:intron | 45.0% | |
| CCGGCTATGTTCAAACACAA+AGG | + | chr8.1:25349604-25349623 | MS.gene44462:CDS | 45.0% | |
| CTCCATCAGGTGGACATTAT+AGG | + | chr8.1:25349151-25349170 | MS.gene44462:intron | 45.0% | |
| CTCCTATAATGTCCACCTGA+TGG | - | chr8.1:25349156-25349175 | None:intergenic | 45.0% | |
| CTGAGACAATCTTAGGGACA+TGG | + | chr8.1:25349692-25349711 | MS.gene44462:CDS | 45.0% | |
| GCATTCAGTGATACCCCTAT+CGG | + | chr8.1:25349379-25349398 | MS.gene44462:CDS | 45.0% | |
| GCTCTCTCAAATAGTCTCAC+CGG | - | chr8.1:25348466-25348485 | None:intergenic | 45.0% | |
| GTATCCAACCAAATTCTCCC+AGG | - | chr8.1:25348211-25348230 | None:intergenic | 45.0% | |
| TCTCACAATGTCTCTCCATC+AGG | + | chr8.1:25349138-25349157 | MS.gene44462:intron | 45.0% | |
| TGAAAGTGACTTACACGAGC+AGG | - | chr8.1:25348355-25348374 | None:intergenic | 45.0% | |
| ! | AATTTTCGTTGCAACGCTGG+AGG | + | chr8.1:25347842-25347861 | MS.gene44462:CDS | 45.0% |
| ! | ATGGTTACATCAGGTTGCAC+TGG | + | chr8.1:25349637-25349656 | MS.gene44462:CDS | 45.0% |
| ! | CTTCTAAGGATCTATGGACC+TGG | + | chr8.1:25349188-25349207 | MS.gene44462:CDS | 45.0% |
| ! | GACGGAAGCTTTTGCGTAAT+TGG | - | chr8.1:25349353-25349372 | None:intergenic | 45.0% |
| ! | TACATCAGGTTGCACTGGAT+GGG | + | chr8.1:25349642-25349661 | MS.gene44462:CDS | 45.0% |
| ! | TTACATCAGGTTGCACTGGA+TGG | + | chr8.1:25349641-25349660 | MS.gene44462:CDS | 45.0% |
| !! | ACCTCTTTTTGTTTGGTGGG+GGG | - | chr8.1:25348036-25348055 | None:intergenic | 45.0% |
| !! | GACCTCTTTTTGTTTGGTGG+GGG | - | chr8.1:25348037-25348056 | None:intergenic | 45.0% |
| !! | GGTGACCTCTTTTTGTTTGG+TGG | - | chr8.1:25348040-25348059 | None:intergenic | 45.0% |
| !! | TTTTGTTTGGTGGGGGGATT+TGG | - | chr8.1:25348030-25348049 | None:intergenic | 45.0% |
| ACCGCATGGATATCAAAGCC+GGG | + | chr8.1:25349429-25349448 | MS.gene44462:CDS | 50.0% | |
| ACTGCTACCCTGGGAGAATT+TGG | + | chr8.1:25348200-25348219 | MS.gene44462:CDS | 50.0% | |
| CACAATGTCTCTCCATCAGG+TGG | + | chr8.1:25349141-25349160 | MS.gene44462:intron | 50.0% | |
| CACCCTCCATGAGCTTGAAT+AGG | - | chr8.1:25348244-25348263 | None:intergenic | 50.0% | |
| CTACCCTGGGAGAATTTGGT+TGG | + | chr8.1:25348204-25348223 | MS.gene44462:CDS | 50.0% | |
| GACCGCATGGATATCAAAGC+CGG | + | chr8.1:25349428-25349447 | MS.gene44462:CDS | 50.0% | |
| GCATCCTACCAGTTGGTTGT+AGG | + | chr8.1:25348671-25348690 | MS.gene44462:intron | 50.0% | |
| TCCCCCCACCAAACAAAAAG+AGG | + | chr8.1:25348032-25348051 | MS.gene44462:CDS | 50.0% | |
| ! | TCCCGGCTTTGATATCCATG+CGG | - | chr8.1:25349433-25349452 | None:intergenic | 50.0% |
| GGGCTAAGCATCCTACCAGT+TGG | + | chr8.1:25348664-25348683 | MS.gene44462:intron | 55.0% | |
| CTCGGTAGCCAAAGACCGCA+TGG | + | chr8.1:25349415-25349434 | MS.gene44462:CDS | 60.0% | |
| ! | CGGTCAGCGAAGAGAAGCGC+CGG | + | chr8.1:25349585-25349604 | MS.gene44462:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 25347806 | 25350011 | 25347806 | ID=MS.gene44462 |
| chr8.1 | mRNA | 25347806 | 25350011 | 25347806 | ID=MS.gene44462.t1;Parent=MS.gene44462 |
| chr8.1 | exon | 25347806 | 25348360 | 25347806 | ID=MS.gene44462.t1.exon1;Parent=MS.gene44462.t1 |
| chr8.1 | CDS | 25347806 | 25348360 | 25347806 | ID=cds.MS.gene44462.t1;Parent=MS.gene44462.t1 |
| chr8.1 | exon | 25349160 | 25350011 | 25349160 | ID=MS.gene44462.t1.exon2;Parent=MS.gene44462.t1 |
| chr8.1 | CDS | 25349160 | 25350011 | 25349160 | ID=cds.MS.gene44462.t1;Parent=MS.gene44462.t1 |
| Gene Sequence |
| Protein sequence |
