Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45340.t1 | XP_013455584.1 | 98.1 | 154 | 3 | 0 | 1 | 154 | 1 | 154 | 1.10E-79 | 305.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45340.t1 | Q976C3 | 30.1 | 143 | 87 | 4 | 17 | 147 | 22 | 163 | 3.0e-09 | 63.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45340.t1 | G7ZX36 | 98.1 | 154 | 3 | 0 | 1 | 154 | 1 | 154 | 8.0e-80 | 305.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene45340.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049293 | MS.gene45340 | -0.812165 | 4.86E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene45340 | 0.806834 | 6.79E-50 | -1.69E-46 |
| MS.gene049824 | MS.gene45340 | 0.823691 | 1.21E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene45340 | 0.856807 | 2.51E-62 | -1.69E-46 |
| MS.gene049873 | MS.gene45340 | 0.837451 | 5.16E-57 | -1.69E-46 |
| MS.gene050303 | MS.gene45340 | 0.829175 | 5.96E-55 | -1.69E-46 |
| MS.gene050559 | MS.gene45340 | 0.806941 | 6.44E-50 | -1.69E-46 |
| MS.gene052302 | MS.gene45340 | 0.810747 | 9.88E-51 | -1.69E-46 |
| MS.gene052358 | MS.gene45340 | -0.83723 | 5.88E-57 | -1.69E-46 |
| MS.gene052376 | MS.gene45340 | 0.813924 | 2.00E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene45340 | 0.80212 | 6.52E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene45340 | 0.803533 | 3.33E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene45340 | 0.804886 | 1.74E-49 | -1.69E-46 |
| MS.gene052926 | MS.gene45340 | 0.808981 | 2.37E-50 | -1.69E-46 |
| MS.gene053054 | MS.gene45340 | -0.809238 | 2.09E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene45340 | 0.806768 | 7.01E-50 | -1.69E-46 |
| MS.gene053294 | MS.gene45340 | 0.815361 | 9.62E-52 | -1.69E-46 |
| MS.gene053995 | MS.gene45340 | 0.814516 | 1.48E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene45340 | 0.804992 | 1.66E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene45340 | 0.835665 | 1.47E-56 | -1.69E-46 |
| MS.gene056091 | MS.gene45340 | 0.845113 | 4.97E-59 | -1.69E-46 |
| MS.gene056366 | MS.gene45340 | 0.807807 | 4.22E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene45340 | 0.828478 | 8.79E-55 | -1.69E-46 |
| MS.gene057555 | MS.gene45340 | 0.838446 | 2.86E-57 | -1.69E-46 |
| MS.gene057705 | MS.gene45340 | 0.804983 | 1.66E-49 | -1.69E-46 |
| MS.gene05795 | MS.gene45340 | 0.805988 | 1.02E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene45340 | 0.805738 | 1.15E-49 | -1.69E-46 |
| MS.gene05953 | MS.gene45340 | 0.817377 | 3.40E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene45340 | 0.870524 | 1.37E-66 | -1.69E-46 |
| MS.gene059569 | MS.gene45340 | 0.821193 | 4.60E-53 | -1.69E-46 |
| MS.gene060429 | MS.gene45340 | 0.806712 | 7.20E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene45340 | 0.801857 | 7.39E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene45340 | 0.822544 | 2.24E-53 | -1.69E-46 |
| MS.gene060619 | MS.gene45340 | 0.800203 | 1.61E-48 | -1.69E-46 |
| MS.gene061040 | MS.gene45340 | -0.818316 | 2.09E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45340.t1 | MTR_4g046047 | 98.052 | 154 | 3 | 0 | 1 | 154 | 1 | 154 | 1.49e-111 | 313 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45340.t1 | AT1G03650 | 69.079 | 152 | 44 | 1 | 6 | 154 | 6 | 157 | 2.04e-74 | 219 |
Find 31 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGTTATGTCATGTATTCT+TGG | 0.193464 | 4.3:-54155130 | MS.gene45340:CDS |
| AGTGGAAGAGATAGTGAAAT+TGG | 0.247431 | 4.3:-54155258 | MS.gene45340:CDS |
| CACGTTGATGCCCAACTTGC+AGG | 0.261704 | 4.3:-54155149 | MS.gene45340:CDS |
| CATGTTGACTGTTTGGTTGA+AGG | 0.355783 | 4.3:-54153746 | MS.gene45340:CDS |
| GAAGCGAGTGATTCGTGTTT+GGG | 0.367842 | 4.3:+54155221 | None:intergenic |
| GGAAGCGAGTGATTCGTGTT+TGG | 0.373847 | 4.3:+54155220 | None:intergenic |
| TGGCTTTCATGTTGACTGTT+TGG | 0.383570 | 4.3:-54153753 | MS.gene45340:CDS |
| CATGACATAACCTGCAAGTT+GGG | 0.434152 | 4.3:+54155139 | None:intergenic |
| TGGACTTCGATTCAAATTGA+AGG | 0.474763 | 4.3:-54153685 | None:intergenic |
| AAATGCTTATAGAATGTACT+TGG | 0.517363 | 4.3:-54153705 | MS.gene45340:CDS |
| TCTTGTACAGATTCAGCGCA+GGG | 0.523854 | 4.3:+54153780 | None:intergenic |
| CAATGGAGGAGGCAAGGACA+CGG | 0.532439 | 4.3:-54153887 | MS.gene45340:CDS |
| ACATGACATAACCTGCAAGT+TGG | 0.533996 | 4.3:+54155138 | None:intergenic |
| GGAGTTGGAACCTGCGAGCT+TGG | 0.538376 | 4.3:+54155082 | None:intergenic |
| GCAGAACAAGAAAAGTTTCG+CGG | 0.541873 | 4.3:-54153832 | MS.gene45340:CDS |
| GCTTCTATCACCAAGCTCGC+AGG | 0.549548 | 4.3:-54155092 | MS.gene45340:intron |
| TTCTTGTACAGATTCAGCGC+AGG | 0.552919 | 4.3:+54153779 | None:intergenic |
| AAGGAGCAATGGAGGAGGCA+AGG | 0.558770 | 4.3:-54153893 | MS.gene45340:CDS |
| ATAGAAGCATACAATGAAGA+AGG | 0.562971 | 4.3:+54155107 | None:intergenic |
| CAGAAACAGTGGTAAAGTAG+TGG | 0.572015 | 4.3:-54155276 | MS.gene45340:CDS |
| CGCATGAGTGATGGCAAATG+TGG | 0.573974 | 4.3:-54155315 | None:intergenic |
| TGCTTCACGTTGATCCGTTG+AGG | 0.576802 | 4.3:-54153805 | MS.gene45340:CDS |
| CTTCTGTAGTGAAGGAGCAA+TGG | 0.596774 | 4.3:-54153904 | MS.gene45340:intron |
| CTGAATCTGTACAAGAAGCA+TGG | 0.599242 | 4.3:-54153773 | MS.gene45340:CDS |
| CTGTAGTGAAGGAGCAATGG+AGG | 0.602271 | 4.3:-54153901 | MS.gene45340:intron |
| TAGTGAAGGAGCAATGGAGG+AGG | 0.603189 | 4.3:-54153898 | MS.gene45340:CDS |
| CGGAGAGGTTCTACTGAAAG+CGG | 0.611656 | 4.3:-54153867 | MS.gene45340:CDS |
| TTCAGCGCAGGGGTCCTCAA+CGG | 0.614591 | 4.3:+54153791 | None:intergenic |
| AATGAACTTGACAGAAACAG+TGG | 0.667655 | 4.3:-54155287 | MS.gene45340:CDS |
| CTTGTACAGATTCAGCGCAG+GGG | 0.671497 | 4.3:+54153781 | None:intergenic |
| GAGGAGGCAAGGACACGGAG+AGG | 0.683029 | 4.3:-54153882 | MS.gene45340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAACTATCTTTAATATA+AGG | - | chr4.3:54154951-54154970 | MS.gene45340:intron | 10.0% |
| !! | ATTAACTATCTTTAATATAA+GGG | - | chr4.3:54154952-54154971 | MS.gene45340:intron | 10.0% |
| !! | AAAGAAATTATCCAATTTAT+AGG | - | chr4.3:54154301-54154320 | MS.gene45340:intron | 15.0% |
| !! | AAGAAATTATCCAATTTATA+GGG | - | chr4.3:54154302-54154321 | MS.gene45340:intron | 15.0% |
| !! | ATAAGAAATTGCAAAAAAAT+TGG | - | chr4.3:54154354-54154373 | MS.gene45340:intron | 15.0% |
| !! | AGAAATTATCCAATTTATAG+GGG | - | chr4.3:54154303-54154322 | MS.gene45340:intron | 20.0% |
| !! | CAATAAAAATAATCTGTTCT+TGG | + | chr4.3:54154776-54154795 | None:intergenic | 20.0% |
| !! | CTAAACGATTGAAATATAAT+AGG | + | chr4.3:54154502-54154521 | None:intergenic | 20.0% |
| !! | TTATATTAACCCCTATAAAT+TGG | + | chr4.3:54154315-54154334 | None:intergenic | 20.0% |
| !!! | ATTAATTTGGAAAAACAGTA+GGG | - | chr4.3:54154746-54154765 | MS.gene45340:intron | 20.0% |
| !!! | CAAGAACAGATTATTTTTAT+TGG | - | chr4.3:54154774-54154793 | MS.gene45340:intron | 20.0% |
| ! | AAAATTTGCAACCCATTTAT+AGG | - | chr4.3:54154238-54154257 | MS.gene45340:intron | 25.0% |
| ! | AAATGCTTATAGAATGTACT+TGG | - | chr4.3:54155288-54155307 | MS.gene45340:CDS | 25.0% |
| ! | AAATTGCAAAAAAATTGGAC+CGG | - | chr4.3:54154359-54154378 | MS.gene45340:intron | 25.0% |
| ! | AAATTTGCAACCCATTTATA+GGG | - | chr4.3:54154239-54154258 | MS.gene45340:intron | 25.0% |
| ! | AATACAAGCATTTCATTAGT+TGG | + | chr4.3:54155010-54155029 | None:intergenic | 25.0% |
| ! | AATCGAATTTCAGTTATTTG+TGG | - | chr4.3:54154632-54154651 | MS.gene45340:intron | 25.0% |
| ! | ACAATATGGGTATGTAATAT+GGG | - | chr4.3:54155055-54155074 | MS.gene45340:intron | 25.0% |
| ! | ATACAAGCATTTCATTAGTT+GGG | + | chr4.3:54155009-54155028 | None:intergenic | 25.0% |
| ! | ATTTGTGGAAACATATCAAT+TGG | - | chr4.3:54154647-54154666 | MS.gene45340:intron | 25.0% |
| ! | CCAGAATTATTATAAAACCT+GGG | - | chr4.3:54154210-54154229 | MS.gene45340:intron | 25.0% |
| ! | TTATGTAAACCCCTATAAAT+GGG | + | chr4.3:54154252-54154271 | None:intergenic | 25.0% |
| !! | AAAATTGTCTAAGTGTGTTT+TGG | - | chr4.3:54153976-54153995 | MS.gene45340:intron | 25.0% |
| !! | GATTAATTTGGAAAAACAGT+AGG | - | chr4.3:54154745-54154764 | MS.gene45340:intron | 25.0% |
| !!! | CAATTTTTCAAACAGCTTAT+AGG | + | chr4.3:54153963-54153982 | None:intergenic | 25.0% |
| !!! | TATTGAATCCTTTAACTTGT+TGG | - | chr4.3:54155026-54155045 | MS.gene45340:intron | 25.0% |
| !!! | TTTGAGTTCATTTTCAAAGA+AGG | + | chr4.3:54153797-54153816 | None:intergenic | 25.0% |
| AATTTGCAACCCATTTATAG+GGG | - | chr4.3:54154240-54154259 | MS.gene45340:intron | 30.0% | |
| ATTTACTATAGAAGTTCCCA+GGG | + | chr4.3:54154820-54154839 | None:intergenic | 30.0% | |
| ATTTCTCTAATGAATTCCCT+GGG | - | chr4.3:54154801-54154820 | MS.gene45340:intron | 30.0% | |
| CAATGTCGATATTGTTAGAT+TGG | + | chr4.3:54154918-54154937 | None:intergenic | 30.0% | |
| CACAATATGGGTATGTAATA+TGG | - | chr4.3:54155054-54155073 | MS.gene45340:intron | 30.0% | |
| CTCTGAATTATATATATCCG+CGG | - | chr4.3:54154722-54154741 | MS.gene45340:intron | 30.0% | |
| CTTATGTAAACCCCTATAAA+TGG | + | chr4.3:54154253-54154272 | None:intergenic | 30.0% | |
| GCCAGAATTATTATAAAACC+TGG | - | chr4.3:54154209-54154228 | MS.gene45340:intron | 30.0% | |
| TAATACATCAACTTAGTCGT+TGG | - | chr4.3:54154467-54154486 | MS.gene45340:intron | 30.0% | |
| TCTGAATTATATATATCCGC+GGG | - | chr4.3:54154723-54154742 | MS.gene45340:intron | 30.0% | |
| ! | ATAGAAGCATACAATGAAGA+AGG | + | chr4.3:54153889-54153908 | None:intergenic | 30.0% |
| ! | CTGTGTTTGTGAATTTTATG+TGG | + | chr4.3:54154852-54154871 | None:intergenic | 30.0% |
| ! | GTATGTAATATGGGATGTTT+TGG | - | chr4.3:54155064-54155083 | MS.gene45340:intron | 30.0% |
| ! | TTGTTGGTTACTCACAATAT+GGG | - | chr4.3:54155042-54155061 | MS.gene45340:intron | 30.0% |
| !! | ACGACTAAGTTGATGTATTA+AGG | + | chr4.3:54154467-54154486 | None:intergenic | 30.0% |
| !! | ACTAAGTTGATGTATTAAGG+GGG | + | chr4.3:54154464-54154483 | None:intergenic | 30.0% |
| !! | CCCAGGTTTTATAATAATTC+TGG | + | chr4.3:54154213-54154232 | None:intergenic | 30.0% |
| !! | CGACTAAGTTGATGTATTAA+GGG | + | chr4.3:54154466-54154485 | None:intergenic | 30.0% |
| !! | GACTAAGTTGATGTATTAAG+GGG | + | chr4.3:54154465-54154484 | None:intergenic | 30.0% |
| AATGAACTTGACAGAAACAG+TGG | - | chr4.3:54153706-54153725 | MS.gene45340:CDS | 35.0% | |
| AGCATAAAAAAGAGTGGAGT+TGG | + | chr4.3:54153929-54153948 | None:intergenic | 35.0% | |
| AGTGGAAGAGATAGTGAAAT+TGG | - | chr4.3:54153735-54153754 | MS.gene45340:CDS | 35.0% | |
| ATATATCCGCGGGATTAATT+TGG | - | chr4.3:54154733-54154752 | MS.gene45340:intron | 35.0% | |
| CAATATCGACATTGTCAGTT+AGG | - | chr4.3:54154924-54154943 | MS.gene45340:intron | 35.0% | |
| CAGGTTATGTCATGTATTCT+TGG | - | chr4.3:54153863-54153882 | MS.gene45340:CDS | 35.0% | |
| CATTTACTATAGAAGTTCCC+AGG | + | chr4.3:54154821-54154840 | None:intergenic | 35.0% | |
| CATTTCTCTAATGAATTCCC+TGG | - | chr4.3:54154800-54154819 | MS.gene45340:intron | 35.0% | |
| CGCGGATATATATAATTCAG+AGG | + | chr4.3:54154724-54154743 | None:intergenic | 35.0% | |
| CTGGGAACTTCTATAGTAAA+TGG | - | chr4.3:54154819-54154838 | MS.gene45340:intron | 35.0% | |
| GAACTCAAAAAGAAGAACAG+TGG | - | chr4.3:54153808-54153827 | MS.gene45340:CDS | 35.0% | |
| GTGAGTAACCAACAAGTTAA+AGG | + | chr4.3:54155037-54155056 | None:intergenic | 35.0% | |
| GTTGACAGCATAAAAAAGAG+TGG | + | chr4.3:54153935-54153954 | None:intergenic | 35.0% | |
| TGAAACAGTTGAAAGGTCTT+GGG | - | chr4.3:54154873-54154892 | MS.gene45340:intron | 35.0% | |
| TGATTTGAGCAAAAGGCTAA+AGG | + | chr4.3:54154431-54154450 | None:intergenic | 35.0% | |
| ! | CTTGTTGGTTACTCACAATA+TGG | - | chr4.3:54155041-54155060 | MS.gene45340:intron | 35.0% |
| ! | GTTTTTCCAAATTAATCCCG+CGG | + | chr4.3:54154742-54154761 | None:intergenic | 35.0% |
| ! | TTTTGTAAGTGTGACTCAGT+TGG | - | chr4.3:54154122-54154141 | MS.gene45340:intron | 35.0% |
| !! | ACTCAACTGATTTGAGCAAA+AGG | + | chr4.3:54154438-54154457 | None:intergenic | 35.0% |
| !!! | GTTGCAAATTTTTTTTGCCC+AGG | + | chr4.3:54154230-54154249 | None:intergenic | 35.0% |
| !!! | TTTTGGTTCTTCTGTAGTGA+AGG | - | chr4.3:54155081-54155100 | MS.gene45340:intron | 35.0% |
| AAGCTTGGATATTGGTATGC+AGG | - | chr4.3:54154146-54154165 | MS.gene45340:intron | 40.0% | |
| ACACAGCTGAAACAGTTGAA+AGG | - | chr4.3:54154866-54154885 | MS.gene45340:intron | 40.0% | |
| ACATGACATAACCTGCAAGT+TGG | + | chr4.3:54153858-54153877 | None:intergenic | 40.0% | |
| AGCTTGGATATTGGTATGCA+GGG | - | chr4.3:54154147-54154166 | MS.gene45340:intron | 40.0% | |
| CAGAAACAGTGGTAAAGTAG+TGG | - | chr4.3:54153717-54153736 | MS.gene45340:CDS | 40.0% | |
| CATGACATAACCTGCAAGTT+GGG | + | chr4.3:54153857-54153876 | None:intergenic | 40.0% | |
| CTGAAACAGTTGAAAGGTCT+TGG | - | chr4.3:54154872-54154891 | MS.gene45340:intron | 40.0% | |
| CTGAATCTGTACAAGAAGCA+TGG | - | chr4.3:54155220-54155239 | MS.gene45340:CDS | 40.0% | |
| GCAGAACAAGAAAAGTTTCG+CGG | - | chr4.3:54155161-54155180 | MS.gene45340:CDS | 40.0% | |
| GCATTTCATTAGTTGGGAGT+TGG | + | chr4.3:54155003-54155022 | None:intergenic | 40.0% | |
| ! | CATGTTGACTGTTTGGTTGA+AGG | - | chr4.3:54155247-54155266 | MS.gene45340:CDS | 40.0% |
| ! | TGGCTTTCATGTTGACTGTT+TGG | - | chr4.3:54155240-54155259 | MS.gene45340:CDS | 40.0% |
| !! | CAGTTGGTAAGCTTGGATAT+TGG | - | chr4.3:54154138-54154157 | MS.gene45340:intron | 40.0% |
| CTTCTGTAGTGAAGGAGCAA+TGG | - | chr4.3:54155089-54155108 | MS.gene45340:intron | 45.0% | |
| GAAAGGTCTTGGGTTCATAC+TGG | - | chr4.3:54154883-54154902 | MS.gene45340:intron | 45.0% | |
| GAAGCGAGTGATTCGTGTTT+GGG | + | chr4.3:54153775-54153794 | None:intergenic | 45.0% | |
| TATGCAGGGTTCGAGATTCT+GGG | - | chr4.3:54154161-54154180 | MS.gene45340:intron | 45.0% | |
| TCTTGTACAGATTCAGCGCA+GGG | + | chr4.3:54155216-54155235 | None:intergenic | 45.0% | |
| TGAGCAAAAGGCTAAAGGCA+GGG | + | chr4.3:54154426-54154445 | None:intergenic | 45.0% | |
| TTCTTGTACAGATTCAGCGC+AGG | + | chr4.3:54155217-54155236 | None:intergenic | 45.0% | |
| TTGAGCAAAAGGCTAAAGGC+AGG | + | chr4.3:54154427-54154446 | None:intergenic | 45.0% | |
| !! | TGTGACTCAGTTGGTAAGCT+TGG | - | chr4.3:54154131-54154150 | MS.gene45340:intron | 45.0% |
| CGGAGAGGTTCTACTGAAAG+CGG | - | chr4.3:54155126-54155145 | MS.gene45340:CDS | 50.0% | |
| CTGTAGTGAAGGAGCAATGG+AGG | - | chr4.3:54155092-54155111 | MS.gene45340:intron | 50.0% | |
| CTTGTACAGATTCAGCGCAG+GGG | + | chr4.3:54155215-54155234 | None:intergenic | 50.0% | |
| GAGCAAAAGGCTAAAGGCAG+GGG | + | chr4.3:54154425-54154444 | None:intergenic | 50.0% | |
| GGAAGCGAGTGATTCGTGTT+TGG | + | chr4.3:54153776-54153795 | None:intergenic | 50.0% | |
| GGTTCGAACCATTTAGCCAG+TGG | - | chr4.3:54154182-54154201 | MS.gene45340:intron | 50.0% | |
| GTATGCAGGGTTCGAGATTC+TGG | - | chr4.3:54154160-54154179 | MS.gene45340:intron | 50.0% | |
| TAGTGAAGGAGCAATGGAGG+AGG | - | chr4.3:54155095-54155114 | MS.gene45340:CDS | 50.0% | |
| TCGAACCATTTAGCCAGTGG+CGG | - | chr4.3:54154185-54154204 | MS.gene45340:intron | 50.0% | |
| TGCTTCACGTTGATCCGTTG+AGG | - | chr4.3:54155188-54155207 | MS.gene45340:CDS | 50.0% | |
| !! | AATAATTCTGGCTCCGCCAC+TGG | + | chr4.3:54154201-54154220 | None:intergenic | 50.0% |
| AAGGAGCAATGGAGGAGGCA+AGG | - | chr4.3:54155100-54155119 | MS.gene45340:CDS | 55.0% | |
| CAAAAGGCTAAAGGCAGGGG+CGG | + | chr4.3:54154422-54154441 | None:intergenic | 55.0% | |
| CAATGGAGGAGGCAAGGACA+CGG | - | chr4.3:54155106-54155125 | MS.gene45340:CDS | 55.0% | |
| CACGTTGATGCCCAACTTGC+AGG | - | chr4.3:54153844-54153863 | MS.gene45340:CDS | 55.0% | |
| GCTTCTATCACCAAGCTCGC+AGG | - | chr4.3:54153901-54153920 | MS.gene45340:intron | 55.0% | |
| TAAAGGCAGGGGCGGTTCTA+AGG | + | chr4.3:54154414-54154433 | None:intergenic | 55.0% | |
| GGAGTTGGAACCTGCGAGCT+TGG | + | chr4.3:54153914-54153933 | None:intergenic | 60.0% | |
| TTCAGCGCAGGGGTCCTCAA+CGG | + | chr4.3:54155205-54155224 | None:intergenic | 60.0% | |
| ! | TGGCTCCGCCACTGGCTAAA+TGG | + | chr4.3:54154193-54154212 | None:intergenic | 60.0% |
| !! | TTCTAAGGCCCAGCGAGCCT+GGG | + | chr4.3:54154399-54154418 | None:intergenic | 60.0% |
| AGACAACTGCCCAGGCTCGC+TGG | - | chr4.3:54154387-54154406 | MS.gene45340:intron | 65.0% | |
| AGCGAGCCTGGGCAGTTGTC+TGG | + | chr4.3:54154388-54154407 | None:intergenic | 65.0% | |
| CTGGGCAGTTGTCTGGGCTC+CGG | + | chr4.3:54154381-54154400 | None:intergenic | 65.0% | |
| GACAACTGCCCAGGCTCGCT+GGG | - | chr4.3:54154388-54154407 | MS.gene45340:intron | 65.0% | |
| GAGGAGGCAAGGACACGGAG+AGG | - | chr4.3:54155111-54155130 | MS.gene45340:CDS | 65.0% | |
| GCGAGCCTGGGCAGTTGTCT+GGG | + | chr4.3:54154387-54154406 | None:intergenic | 65.0% | |
| !! | GTTCTAAGGCCCAGCGAGCC+TGG | + | chr4.3:54154400-54154419 | None:intergenic | 65.0% |
| CGGAGCCCAGACAACTGCCC+AGG | - | chr4.3:54154379-54154398 | MS.gene45340:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 54153688 | 54155327 | 54153688 | ID=MS.gene45340 |
| chr4.3 | mRNA | 54153688 | 54155327 | 54153688 | ID=MS.gene45340.t1;Parent=MS.gene45340 |
| chr4.3 | exon | 54155093 | 54155327 | 54155093 | ID=MS.gene45340.t1.exon1;Parent=MS.gene45340.t1 |
| chr4.3 | CDS | 54155093 | 54155327 | 54155093 | ID=cds.MS.gene45340.t1;Parent=MS.gene45340.t1 |
| chr4.3 | exon | 54153688 | 54153917 | 54153688 | ID=MS.gene45340.t1.exon2;Parent=MS.gene45340.t1 |
| chr4.3 | CDS | 54153688 | 54153917 | 54153688 | ID=cds.MS.gene45340.t1;Parent=MS.gene45340.t1 |
| Gene Sequence |
| Protein sequence |
