Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47826.t1 | XP_003604663.1 | 95.1 | 243 | 12 | 0 | 16 | 258 | 37 | 279 | 7.80E-78 | 300.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47826.t1 | Q9SDW0 | 58.2 | 263 | 86 | 2 | 19 | 257 | 50 | 312 | 2.4e-43 | 177.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47826.t1 | G7JN34 | 95.1 | 243 | 12 | 0 | 16 | 258 | 37 | 279 | 5.6e-78 | 300.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene47826.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene47826 | 0.814343 | 1.62E-51 | -1.69E-46 |
| MS.gene049499 | MS.gene47826 | 0.822519 | 2.27E-53 | -1.69E-46 |
| MS.gene051332 | MS.gene47826 | 0.803436 | 3.49E-49 | -1.69E-46 |
| MS.gene051492 | MS.gene47826 | 0.803533 | 3.33E-49 | -1.69E-46 |
| MS.gene051832 | MS.gene47826 | 0.812723 | 3.67E-51 | -1.69E-46 |
| MS.gene052118 | MS.gene47826 | 0.814476 | 1.51E-51 | -1.69E-46 |
| MS.gene052493 | MS.gene47826 | 0.819975 | 8.75E-53 | -1.69E-46 |
| MS.gene052534 | MS.gene47826 | 0.809888 | 1.51E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene47826 | 0.813556 | 2.41E-51 | -1.69E-46 |
| MS.gene053340 | MS.gene47826 | 0.808837 | 2.54E-50 | -1.69E-46 |
| MS.gene05439 | MS.gene47826 | 0.810133 | 1.34E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene47826 | 0.803033 | 4.23E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene47826 | 0.81497 | 1.17E-51 | -1.69E-46 |
| MS.gene054892 | MS.gene47826 | 0.852287 | 5.10E-61 | -1.69E-46 |
| MS.gene054893 | MS.gene47826 | 0.849 | 4.28E-60 | -1.69E-46 |
| MS.gene055827 | MS.gene47826 | 0.80841 | 3.14E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene47826 | 0.804097 | 2.54E-49 | -1.69E-46 |
| MS.gene057155 | MS.gene47826 | 0.821054 | 4.95E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene47826 | 0.801889 | 7.28E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene47826 | 0.808485 | 3.03E-50 | -1.69E-46 |
| MS.gene058159 | MS.gene47826 | 0.800568 | 1.36E-48 | -1.69E-46 |
| MS.gene058429 | MS.gene47826 | 0.807725 | 4.39E-50 | -1.69E-46 |
| MS.gene058592 | MS.gene47826 | 0.800422 | 1.45E-48 | -1.69E-46 |
| MS.gene059439 | MS.gene47826 | 0.821339 | 4.26E-53 | -1.69E-46 |
| MS.gene05952 | MS.gene47826 | 0.813973 | 1.95E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene47826 | -0.803821 | 2.90E-49 | -1.69E-46 |
| MS.gene060412 | MS.gene47826 | 0.827614 | 1.42E-54 | -1.69E-46 |
| MS.gene060413 | MS.gene47826 | 0.80774 | 4.36E-50 | -1.69E-46 |
| MS.gene060851 | MS.gene47826 | 0.811439 | 7.00E-51 | -1.69E-46 |
| MS.gene060852 | MS.gene47826 | 0.810604 | 1.06E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene47826 | 0.810166 | 1.32E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene47826 | 0.811312 | 7.46E-51 | -1.69E-46 |
| MS.gene061188 | MS.gene47826 | 0.809771 | 1.60E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47826.t1 | MTR_4g015680 | 94.262 | 244 | 14 | 0 | 15 | 258 | 36 | 279 | 2.13e-144 | 405 |
| MS.gene47826.t1 | MTR_7g068770 | 76.230 | 244 | 57 | 1 | 16 | 258 | 48 | 291 | 5.77e-105 | 306 |
| MS.gene47826.t1 | MTR_5g026540 | 49.237 | 262 | 112 | 6 | 13 | 255 | 38 | 297 | 1.06e-56 | 183 |
| MS.gene47826.t1 | MTR_1g060990 | 25.292 | 257 | 163 | 6 | 15 | 255 | 126 | 369 | 1.44e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47826.t1 | AT2G38250 | 57.831 | 249 | 98 | 2 | 16 | 257 | 37 | 285 | 7.97e-68 | 211 |
| MS.gene47826.t1 | AT5G01380 | 52.652 | 264 | 101 | 4 | 18 | 257 | 49 | 312 | 1.64e-65 | 207 |
| MS.gene47826.t1 | AT3G25990 | 33.663 | 101 | 64 | 1 | 21 | 118 | 55 | 155 | 2.72e-13 | 69.3 |
| MS.gene47826.t1 | AT1G13450 | 33.696 | 92 | 61 | 0 | 21 | 112 | 87 | 178 | 3.41e-12 | 65.5 |
| MS.gene47826.t1 | AT1G13450 | 33.696 | 92 | 61 | 0 | 21 | 112 | 87 | 178 | 3.41e-12 | 65.5 |
| MS.gene47826.t1 | AT1G13450 | 33.696 | 92 | 61 | 0 | 21 | 112 | 87 | 178 | 5.96e-12 | 65.5 |
| MS.gene47826.t1 | AT1G13450 | 33.696 | 92 | 61 | 0 | 21 | 112 | 87 | 178 | 6.57e-12 | 63.9 |
Find 52 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGGAATTTGAAGGAAATTT+TGG | 0.113135 | 4.3:+82841054 | MS.gene47826:CDS |
| CCAAAATTTCCTTCAAATTC+CGG | 0.246461 | 4.3:-82841054 | None:intergenic |
| TACACTGTTCTGCACTTCTA+TGG | 0.273481 | 4.3:-82839576 | None:intergenic |
| AAACTTTCATGGAGACTAAA+AGG | 0.293357 | 4.3:+82839503 | MS.gene47826:CDS |
| AAACCTTGTTACTCGCTATA+AGG | 0.341215 | 4.3:+82839612 | MS.gene47826:CDS |
| TGAAAGGAGGTTGAGGGAGA+TGG | 0.392114 | 4.3:+82841144 | MS.gene47826:CDS |
| AGAGAATGAGAGGTTATTGA+TGG | 0.399948 | 4.3:+82841192 | MS.gene47826:CDS |
| TTCCAACCATATGAAGGAAA+AGG | 0.414450 | 4.3:+82839549 | MS.gene47826:CDS |
| CAAGGATGCAGAGAATGTTA+TGG | 0.422643 | 4.3:+82840867 | MS.gene47826:CDS |
| GGAGCTTGATCAAACTTTCA+TGG | 0.426540 | 4.3:+82839492 | MS.gene47826:CDS |
| GAGAGAATGAAAGGAGGTTG+AGG | 0.427005 | 4.3:+82841137 | MS.gene47826:CDS |
| TGGAACAAAGATGGAGAGAA+AGG | 0.438127 | 4.3:+82841212 | MS.gene47826:CDS |
| AGAGAATGAAAGGAGGTTGA+GGG | 0.438616 | 4.3:+82841138 | MS.gene47826:CDS |
| TCCAACCATATGAAGGAAAA+GGG | 0.443984 | 4.3:+82839550 | MS.gene47826:CDS |
| AAGGATGCAGAGAATGTTAT+GGG | 0.447137 | 4.3:+82840868 | MS.gene47826:CDS |
| AAGTGAAGCAGTGTCTCAAA+AGG | 0.452908 | 4.3:+82840967 | MS.gene47826:CDS |
| GGAGTATAAGAGAAGAAGCT+AGG | 0.465680 | 4.3:+82841245 | MS.gene47826:CDS |
| GTAGTAGCAAAAGTTTCTTC+CGG | 0.476942 | 4.3:+82841035 | MS.gene47826:CDS |
| GGAGGTTGAGGGAGATGGAG+TGG | 0.477709 | 4.3:+82841149 | MS.gene47826:CDS |
| GAAGAATAAATGTGATAGCA+TGG | 0.480015 | 4.3:+82837605 | MS.gene47826:CDS |
| AGTTATTTCCAACCATATGA+AGG | 0.482469 | 4.3:+82839543 | MS.gene47826:CDS |
| AAGTTTCTTCCGGAATTTGA+AGG | 0.486534 | 4.3:+82841045 | MS.gene47826:CDS |
| CTTCATCGTCATCGGTTGAA+AGG | 0.490067 | 4.3:-82840928 | None:intergenic |
| AAGAAGCTAGGGCTGAGAAG+AGG | 0.496506 | 4.3:+82841257 | MS.gene47826:CDS |
| GGTTATTGATGGAACAAAGA+TGG | 0.509077 | 4.3:+82841203 | MS.gene47826:CDS |
| AGAAGCTAGGGCTGAGAAGA+GGG | 0.509525 | 4.3:+82841258 | MS.gene47826:CDS |
| TAAAAGGAACAAACAATTGT+GGG | 0.514530 | 4.3:+82839519 | MS.gene47826:CDS |
| GGAACAAAGATGGAGAGAAA+GGG | 0.522554 | 4.3:+82841213 | MS.gene47826:CDS |
| GAGTATAAGAGAAGAAGCTA+GGG | 0.529590 | 4.3:+82841246 | MS.gene47826:CDS |
| GATGGAGTGGAGACAACAAA+TGG | 0.535582 | 4.3:+82841162 | MS.gene47826:CDS |
| CAGAACAGTGTAAGTGCAAG+TGG | 0.539152 | 4.3:+82839587 | MS.gene47826:CDS |
| GCACATTGAAGCACAATGGA+TGG | 0.549045 | 4.3:+82841099 | MS.gene47826:CDS |
| TGAAGACGGGTCGAAGAAGA+AGG | 0.555495 | 4.3:+82840898 | MS.gene47826:CDS |
| AAGAATAAATGTGATAGCAT+GGG | 0.557327 | 4.3:+82837606 | MS.gene47826:CDS |
| GGAGAGAAAGGGAAGAACAA+AGG | 0.557998 | 4.3:+82841224 | MS.gene47826:CDS |
| TGGAAGTGTTAGAGAATGAG+AGG | 0.559302 | 4.3:+82841182 | MS.gene47826:CDS |
| TTGAAGCAAGAGAGAATGAA+AGG | 0.568271 | 4.3:+82841128 | MS.gene47826:CDS |
| AGTGAAGCAGTGTCTCAAAA+GGG | 0.570275 | 4.3:+82840968 | MS.gene47826:CDS |
| ACCATCGTCTTCATCGTCAT+CGG | 0.570363 | 4.3:-82840936 | None:intergenic |
| AAGCAAGAGAGAATGAAAGG+AGG | 0.580861 | 4.3:+82841131 | MS.gene47826:CDS |
| TTATGGGCTGAAGCTGAAGA+CGG | 0.582254 | 4.3:+82840884 | MS.gene47826:CDS |
| TATGGGCTGAAGCTGAAGAC+GGG | 0.583116 | 4.3:+82840885 | MS.gene47826:CDS |
| GCAAAGGTAGACAGCGAAAG+CGG | 0.602051 | 4.3:+82841013 | MS.gene47826:CDS |
| TTTCTGATAGGTTTCCTCAG+TGG | 0.605665 | 4.3:+82839431 | MS.gene47826:intron |
| TGTAAAGGGATGTGAAACAA+TGG | 0.609192 | 4.3:+82840784 | MS.gene47826:intron |
| CTAAAAGGAACAAACAATTG+TGG | 0.626693 | 4.3:+82839518 | MS.gene47826:CDS |
| GTGGAGCATACAAGAGACGA+AGG | 0.634977 | 4.3:+82839450 | MS.gene47826:CDS |
| GGAGTTTCTGATGATTCGAG+CGG | 0.666664 | 4.3:+82839471 | MS.gene47826:CDS |
| ATACCTTATAGCGAGTAACA+AGG | 0.668872 | 4.3:-82839615 | None:intergenic |
| AATTGCACATTGAAGCACAA+TGG | 0.673738 | 4.3:+82841095 | MS.gene47826:CDS |
| ACCGATGACGATGAAGACGA+TGG | 0.696270 | 4.3:+82840935 | MS.gene47826:CDS |
| GTCTCTTGTATGCTCCACTG+AGG | 0.764902 | 4.3:-82839445 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAATTAATATAAATTCAT+AGG | - | chr4.3:82840317-82840336 | None:intergenic | 10.0% |
| !! | ATAAAATAGTTAAGATTAAT+TGG | + | chr4.3:82840447-82840466 | MS.gene47826:intron | 10.0% |
| !! | ATTAATTAACAATAAGAAAA+GGG | - | chr4.3:82839850-82839869 | None:intergenic | 10.0% |
| !! | TTATTCATATATTTCATATT+TGG | + | chr4.3:82839648-82839667 | MS.gene47826:intron | 10.0% |
| !! | AAAATTCTTATCAAATAATC+AGG | + | chr4.3:82839969-82839988 | MS.gene47826:intron | 15.0% |
| !! | AAATTCTTATCAAATAATCA+GGG | + | chr4.3:82839970-82839989 | MS.gene47826:intron | 15.0% |
| !! | AAGATAAAATTAACAAAATC+TGG | + | chr4.3:82838417-82838436 | MS.gene47826:intron | 15.0% |
| !! | AATTAAACAAATTTGAATTG+AGG | + | chr4.3:82838543-82838562 | MS.gene47826:intron | 15.0% |
| !! | ATATTTCCTTAAAAAAACAA+AGG | + | chr4.3:82839027-82839046 | MS.gene47826:intron | 15.0% |
| !! | GATTAATTAACAATAAGAAA+AGG | - | chr4.3:82839851-82839870 | None:intergenic | 15.0% |
| !! | GTGATATAGAAAATTAATAT+CGG | + | chr4.3:82840547-82840566 | MS.gene47826:intron | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr4.3:82838288-82838307 | None:intergenic | 15.0% |
| !!! | AGTCATTACTTAATTTTAAT+AGG | + | chr4.3:82838193-82838212 | MS.gene47826:intron | 15.0% |
| !!! | ATAAAGATACTCTTTAAAAA+TGG | - | chr4.3:82838813-82838832 | None:intergenic | 15.0% |
| !!! | ATTTATTTTTTGACATGTAA+AGG | + | chr4.3:82840769-82840788 | MS.gene47826:intron | 15.0% |
| !!! | ATTTTTTTAATTGATGTATG+TGG | - | chr4.3:82838103-82838122 | None:intergenic | 15.0% |
| !!! | TAAGCAAAATTTTATTATCT+TGG | + | chr4.3:82838039-82838058 | MS.gene47826:intron | 15.0% |
| !!! | TAATCTTAACTATTTTATTG+AGG | - | chr4.3:82840445-82840464 | None:intergenic | 15.0% |
| !!! | TAGAAGTAATTTTTTTTGTA+GGG | - | chr4.3:82838228-82838247 | None:intergenic | 15.0% |
| !!! | TTAAAAGTTCTCAATTTTAT+AGG | + | chr4.3:82838637-82838656 | MS.gene47826:intron | 15.0% |
| !!! | TTAGAAGTAATTTTTTTTGT+AGG | - | chr4.3:82838229-82838248 | None:intergenic | 15.0% |
| !!! | TTATACACTAATTTCTTTTT+AGG | - | chr4.3:82837994-82838013 | None:intergenic | 15.0% |
| !!! | TTTATTTTTTGACATGTAAA+GGG | + | chr4.3:82840770-82840789 | MS.gene47826:intron | 15.0% |
| !!! | TTTCTAGTTACTATATATTA+GGG | - | chr4.3:82838681-82838700 | None:intergenic | 15.0% |
| !! | AAAAAAAAATCATCACAAAG+TGG | + | chr4.3:82838939-82838958 | MS.gene47826:intron | 20.0% |
| !! | CAAGAAAGTTTCTTTATTAT+TGG | + | chr4.3:82838844-82838863 | MS.gene47826:intron | 20.0% |
| !! | GAAAAAGAAAAAGAAAAGAA+AGG | - | chr4.3:82839298-82839317 | None:intergenic | 20.0% |
| !! | TAAATATTGCGTTATATAAG+TGG | - | chr4.3:82840258-82840277 | None:intergenic | 20.0% |
| !! | TATTTAACCCTTACTATTAT+AGG | - | chr4.3:82838135-82838154 | None:intergenic | 20.0% |
| !! | TCACAAAATTATCAATAGAA+TGG | - | chr4.3:82840531-82840550 | None:intergenic | 20.0% |
| !! | TTAGTCTACTAAATATCATA+AGG | + | chr4.3:82839916-82839935 | MS.gene47826:intron | 20.0% |
| !!! | ACTTTGTGATGATTTTTTTT+TGG | - | chr4.3:82838940-82838959 | None:intergenic | 20.0% |
| !!! | AGAAAGATTTTATATGTGAT+TGG | - | chr4.3:82839162-82839181 | None:intergenic | 20.0% |
| !!! | ATACTCTTTAAAAATGGATT+GGG | - | chr4.3:82838807-82838826 | None:intergenic | 20.0% |
| !!! | ATTAGGGTTAAATATGTTTT+TGG | - | chr4.3:82838665-82838684 | None:intergenic | 20.0% |
| !!! | ATTTTCTTCATCACAAAATT+TGG | + | chr4.3:82840643-82840662 | MS.gene47826:intron | 20.0% |
| !!! | ATTTTGCTTATAATAGTGAT+AGG | - | chr4.3:82838029-82838048 | None:intergenic | 20.0% |
| !!! | CTTTCTAGTTACTATATATT+AGG | - | chr4.3:82838682-82838701 | None:intergenic | 20.0% |
| !!! | TAAGATGAGATTTTTCTTTT+GGG | - | chr4.3:82839224-82839243 | None:intergenic | 20.0% |
| !!! | TAGAAGTTTCCAATTTTATA+GGG | - | chr4.3:82838168-82838187 | None:intergenic | 20.0% |
| !!! | TATTCTCCTTTGTTTTTTTA+AGG | - | chr4.3:82839036-82839055 | None:intergenic | 20.0% |
| !!! | TTAAGATGAGATTTTTCTTT+TGG | - | chr4.3:82839225-82839244 | None:intergenic | 20.0% |
| !!! | TTAGAAGTTTCCAATTTTAT+AGG | - | chr4.3:82838169-82838188 | None:intergenic | 20.0% |
| !!! | TTCTATTTCTAGATATTGTA+CGG | - | chr4.3:82839061-82839080 | None:intergenic | 20.0% |
| ! | AAACAAATTTGAATTGAGGA+GGG | + | chr4.3:82838547-82838566 | MS.gene47826:intron | 25.0% |
| ! | AAGAATAAATGTGATAGCAT+GGG | + | chr4.3:82837606-82837625 | MS.gene47826:CDS | 25.0% |
| ! | ACTTCTAAACAAAAGATTAG+TGG | + | chr4.3:82837866-82837885 | MS.gene47826:intron | 25.0% |
| ! | ATTAGTGTTAATGTAAGCAA+AGG | + | chr4.3:82840495-82840514 | MS.gene47826:intron | 25.0% |
| ! | ATTGTTTGCCTATAATAGTA+AGG | + | chr4.3:82838124-82838143 | MS.gene47826:intron | 25.0% |
| ! | GACAATGCATAATATATGTA+AGG | + | chr4.3:82837918-82837937 | MS.gene47826:intron | 25.0% |
| ! | TAAAAGGAACAAACAATTGT+GGG | + | chr4.3:82839519-82839538 | MS.gene47826:CDS | 25.0% |
| ! | TAAACAAATTTGAATTGAGG+AGG | + | chr4.3:82838546-82838565 | MS.gene47826:intron | 25.0% |
| ! | TCATTCAACTTCAATTTCAA+TGG | + | chr4.3:82839318-82839337 | MS.gene47826:intron | 25.0% |
| ! | TGAGTGCAGAAAAAAAATTA+GGG | + | chr4.3:82838578-82838597 | MS.gene47826:intron | 25.0% |
| ! | TTGAGTGCAGAAAAAAAATT+AGG | + | chr4.3:82838577-82838596 | MS.gene47826:intron | 25.0% |
| ! | TTGTTTGCCTATAATAGTAA+GGG | + | chr4.3:82838125-82838144 | MS.gene47826:intron | 25.0% |
| !! | AAGATGAGATTTTTCTTTTG+GGG | - | chr4.3:82839223-82839242 | None:intergenic | 25.0% |
| !! | AATTATGCACTAATCTTTTG+TGG | - | chr4.3:82837971-82837990 | None:intergenic | 25.0% |
| !! | ATAGGTTTTTATATGTGCTA+AGG | + | chr4.3:82840739-82840758 | MS.gene47826:intron | 25.0% |
| !! | ATTATGCACTAATCTTTTGT+GGG | - | chr4.3:82837970-82837989 | None:intergenic | 25.0% |
| !! | GATACTCTTTAAAAATGGAT+TGG | - | chr4.3:82838808-82838827 | None:intergenic | 25.0% |
| !! | GTAAGGGTTAAATATGTTTT+TGG | + | chr4.3:82838141-82838160 | MS.gene47826:intron | 25.0% |
| !! | TAGGTTTTTATATGTGCTAA+GGG | + | chr4.3:82840740-82840759 | MS.gene47826:intron | 25.0% |
| !!! | TTTTTGTTGCATGGTTTTAT+AGG | + | chr4.3:82840721-82840740 | MS.gene47826:intron | 25.0% |
| AAACTTTCATGGAGACTAAA+AGG | + | chr4.3:82839503-82839522 | MS.gene47826:CDS | 30.0% | |
| AAATATCATAAGGTGTGAAC+TGG | + | chr4.3:82839926-82839945 | MS.gene47826:intron | 30.0% | |
| AATATCATAAGGTGTGAACT+GGG | + | chr4.3:82839927-82839946 | MS.gene47826:intron | 30.0% | |
| ACTTTATGATACTTACACCA+TGG | + | chr4.3:82840164-82840183 | MS.gene47826:intron | 30.0% | |
| CAGAAAGAAGAAAAAAGCAA+AGG | + | chr4.3:82840997-82841016 | MS.gene47826:CDS | 30.0% | |
| CATAATATATGTAAGGTCTG+GGG | + | chr4.3:82837925-82837944 | MS.gene47826:intron | 30.0% | |
| CCAAAATTTCCTTCAAATTC+CGG | - | chr4.3:82841057-82841076 | None:intergenic | 30.0% | |
| CTAAAACACGCTATAATATG+AGG | - | chr4.3:82840353-82840372 | None:intergenic | 30.0% | |
| CTAAAAGGAACAAACAATTG+TGG | + | chr4.3:82839518-82839537 | MS.gene47826:CDS | 30.0% | |
| CTAATGTTTATCCATATGCT+TGG | - | chr4.3:82839900-82839919 | None:intergenic | 30.0% | |
| CTTTATGATACTTACACCAT+GGG | + | chr4.3:82840165-82840184 | MS.gene47826:intron | 30.0% | |
| GAAGAATAAATGTGATAGCA+TGG | + | chr4.3:82837605-82837624 | MS.gene47826:CDS | 30.0% | |
| GATAAATCTCTCTGATTACA+AGG | - | chr4.3:82839253-82839272 | None:intergenic | 30.0% | |
| GCATAATATATGTAAGGTCT+GGG | + | chr4.3:82837924-82837943 | MS.gene47826:intron | 30.0% | |
| TCAACTTCAATTTCAATGGA+GGG | + | chr4.3:82839322-82839341 | MS.gene47826:intron | 30.0% | |
| TGCATAATATATGTAAGGTC+TGG | + | chr4.3:82837923-82837942 | MS.gene47826:intron | 30.0% | |
| TGCTTATAATAGTGATAGGA+AGG | - | chr4.3:82838025-82838044 | None:intergenic | 30.0% | |
| TTCAACTTCAATTTCAATGG+AGG | + | chr4.3:82839321-82839340 | MS.gene47826:intron | 30.0% | |
| ! | AAACAAACTTTGCTGTAACA+AGG | - | chr4.3:82838259-82838278 | None:intergenic | 30.0% |
| ! | AGTTATTTCCAACCATATGA+AGG | + | chr4.3:82839543-82839562 | MS.gene47826:CDS | 30.0% |
| ! | ATCGATTAGTTAGCTTATGA+TGG | + | chr4.3:82838707-82838726 | MS.gene47826:intron | 30.0% |
| ! | CTCATATTATAGCGTGTTTT+AGG | + | chr4.3:82840351-82840370 | MS.gene47826:intron | 30.0% |
| ! | GAGTTAAGATTTTTGTTGCA+TGG | + | chr4.3:82840712-82840731 | MS.gene47826:intron | 30.0% |
| ! | TTCAAACAATTTTCACAGCA+AGG | + | chr4.3:82840849-82840868 | MS.gene47826:CDS | 30.0% |
| !! | GTTAGCTTATGATGGATAAA+TGG | + | chr4.3:82838715-82838734 | MS.gene47826:intron | 30.0% |
| !!! | GTTTTTGGTCCCTATAAAAT+TGG | + | chr4.3:82838156-82838175 | MS.gene47826:intron | 30.0% |
| !!! | TTTACGACAATTTTTTGCAG+AGG | + | chr4.3:82838455-82838474 | MS.gene47826:intron | 30.0% |
| AAACCTTGTTACTCGCTATA+AGG | + | chr4.3:82839612-82839631 | MS.gene47826:CDS | 35.0% | |
| AAGGATGCAGAGAATGTTAT+GGG | + | chr4.3:82840868-82840887 | MS.gene47826:CDS | 35.0% | |
| AAGTTTCTTCCGGAATTTGA+AGG | + | chr4.3:82841045-82841064 | MS.gene47826:CDS | 35.0% | |
| AATTGCACATTGAAGCACAA+TGG | + | chr4.3:82841095-82841114 | MS.gene47826:CDS | 35.0% | |
| ACTTTGTCATGAAGCAAAGA+TGG | + | chr4.3:82840131-82840150 | MS.gene47826:intron | 35.0% | |
| AGAGAATGAGAGGTTATTGA+TGG | + | chr4.3:82841192-82841211 | MS.gene47826:CDS | 35.0% | |
| ATACCTTATAGCGAGTAACA+AGG | - | chr4.3:82839618-82839637 | None:intergenic | 35.0% | |
| ATTCTAAGTCCAAAATCCGA+GGG | - | chr4.3:82840035-82840054 | None:intergenic | 35.0% | |
| CAACTTCAATTTCAATGGAG+GGG | + | chr4.3:82839323-82839342 | MS.gene47826:intron | 35.0% | |
| CCACACGTAGATTAATTAAG+TGG | + | chr4.3:82838911-82838930 | MS.gene47826:intron | 35.0% | |
| CCACTTAATTAATCTACGTG+TGG | - | chr4.3:82838914-82838933 | None:intergenic | 35.0% | |
| CTTATCAAATAATCAGGGCT+GGG | + | chr4.3:82839975-82839994 | MS.gene47826:intron | 35.0% | |
| GAGTATAAGAGAAGAAGCTA+GGG | + | chr4.3:82841246-82841265 | MS.gene47826:CDS | 35.0% | |
| GGTTATTGATGGAACAAAGA+TGG | + | chr4.3:82841203-82841222 | MS.gene47826:CDS | 35.0% | |
| GTAGTAGCAAAAGTTTCTTC+CGG | + | chr4.3:82841035-82841054 | MS.gene47826:CDS | 35.0% | |
| TATGATCTAAGTTGCACAGA+TGG | + | chr4.3:82839746-82839765 | MS.gene47826:intron | 35.0% | |
| TATTCTAAGTCCAAAATCCG+AGG | - | chr4.3:82840036-82840055 | None:intergenic | 35.0% | |
| TCCAACCATATGAAGGAAAA+GGG | + | chr4.3:82839550-82839569 | MS.gene47826:CDS | 35.0% | |
| TCTTATCAAATAATCAGGGC+TGG | + | chr4.3:82839974-82839993 | MS.gene47826:intron | 35.0% | |
| TGGGAACACTTAAACAAAAG+TGG | + | chr4.3:82837657-82837676 | MS.gene47826:intron | 35.0% | |
| TGTAAAGGGATGTGAAACAA+TGG | + | chr4.3:82840784-82840803 | MS.gene47826:intron | 35.0% | |
| TTCCAACCATATGAAGGAAA+AGG | + | chr4.3:82839549-82839568 | MS.gene47826:CDS | 35.0% | |
| TTGAAGCAAGAGAGAATGAA+AGG | + | chr4.3:82841128-82841147 | MS.gene47826:CDS | 35.0% | |
| TTTAGGCCTCAAAATGTGTT+AGG | + | chr4.3:82840368-82840387 | MS.gene47826:intron | 35.0% | |
| ! | ACGTTGTTGATGTTTCTGAT+AGG | + | chr4.3:82839419-82839438 | MS.gene47826:intron | 35.0% |
| ! | CCGGAATTTGAAGGAAATTT+TGG | + | chr4.3:82841054-82841073 | MS.gene47826:CDS | 35.0% |
| ! | CTTCATCACAAAATTTGGTG+AGG | + | chr4.3:82840648-82840667 | MS.gene47826:intron | 35.0% |
| ! | GTTGTTGTTGATGTTGTCTT+TGG | - | chr4.3:82839369-82839388 | None:intergenic | 35.0% |
| ! | GTTTTTATATGTGCTAAGGG+TGG | + | chr4.3:82840743-82840762 | MS.gene47826:intron | 35.0% |
| !!! | CTTTTGGGGTATGATTGATA+CGG | - | chr4.3:82839209-82839228 | None:intergenic | 35.0% |
| !!! | GTTGTCTTTGGTTTTTGTGA+TGG | - | chr4.3:82839357-82839376 | None:intergenic | 35.0% |
| AAATTGTCACGCCAAGCATA+TGG | + | chr4.3:82839886-82839905 | MS.gene47826:intron | 40.0% | |
| AAGCAAGAGAGAATGAAAGG+AGG | + | chr4.3:82841131-82841150 | MS.gene47826:CDS | 40.0% | |
| AAGTGAAGCAGTGTCTCAAA+AGG | + | chr4.3:82840967-82840986 | MS.gene47826:CDS | 40.0% | |
| AGAGAATGAAAGGAGGTTGA+GGG | + | chr4.3:82841138-82841157 | MS.gene47826:CDS | 40.0% | |
| AGTGAAGCAGTGTCTCAAAA+GGG | + | chr4.3:82840968-82840987 | MS.gene47826:CDS | 40.0% | |
| CAAGGATGCAGAGAATGTTA+TGG | + | chr4.3:82840867-82840886 | MS.gene47826:CDS | 40.0% | |
| GGAACAAAGATGGAGAGAAA+GGG | + | chr4.3:82841213-82841232 | MS.gene47826:CDS | 40.0% | |
| GGAGCTTGATCAAACTTTCA+TGG | + | chr4.3:82839492-82839511 | MS.gene47826:CDS | 40.0% | |
| GGAGTATAAGAGAAGAAGCT+AGG | + | chr4.3:82841245-82841264 | MS.gene47826:CDS | 40.0% | |
| TACACTGTTCTGCACTTCTA+TGG | - | chr4.3:82839579-82839598 | None:intergenic | 40.0% | |
| TGCAACATTATTTGCAGTGC+CGG | - | chr4.3:82840394-82840413 | None:intergenic | 40.0% | |
| TGCATTGTCACTATCAACTG+AGG | - | chr4.3:82837907-82837926 | None:intergenic | 40.0% | |
| TGGAACAAAGATGGAGAGAA+AGG | + | chr4.3:82841212-82841231 | MS.gene47826:CDS | 40.0% | |
| TTTCTGATAGGTTTCCTCAG+TGG | + | chr4.3:82839431-82839450 | MS.gene47826:intron | 40.0% | |
| ! | AAGGAGAGATTTGCTTTGGT+AGG | - | chr4.3:82839093-82839112 | None:intergenic | 40.0% |
| ! | ACCCTTTTCCTTCATATGGT+TGG | - | chr4.3:82839554-82839573 | None:intergenic | 40.0% |
| ! | ATGCACTAATCTTTTGTGGG+TGG | - | chr4.3:82837967-82837986 | None:intergenic | 40.0% |
| ! | GGAAAAGGAGAGATTTGCTT+TGG | - | chr4.3:82839097-82839116 | None:intergenic | 40.0% |
| ! | GGTAACCCTTTTCCTTCATA+TGG | - | chr4.3:82839558-82839577 | None:intergenic | 40.0% |
| !! | TATGAGAAGTGTTGAACCCA+TGG | - | chr4.3:82840184-82840203 | None:intergenic | 40.0% |
| !! | TGGAAGTGTTAGAGAATGAG+AGG | + | chr4.3:82841182-82841201 | MS.gene47826:CDS | 40.0% |
| AAATAATCAGGGCTGGGCTA+AGG | + | chr4.3:82839981-82840000 | MS.gene47826:intron | 45.0% | |
| AATAATCAGGGCTGGGCTAA+GGG | + | chr4.3:82839982-82840001 | MS.gene47826:intron | 45.0% | |
| ACACAACACAAGACTCACAG+TGG | - | chr4.3:82837721-82837740 | None:intergenic | 45.0% | |
| ACCATCGTCTTCATCGTCAT+CGG | - | chr4.3:82840939-82840958 | None:intergenic | 45.0% | |
| CAGAACAGTGTAAGTGCAAG+TGG | + | chr4.3:82839587-82839606 | MS.gene47826:CDS | 45.0% | |
| GACGCAGTTTGTGATGTGAA+TGG | - | chr4.3:82839128-82839147 | None:intergenic | 45.0% | |
| GAGAGAATGAAAGGAGGTTG+AGG | + | chr4.3:82841137-82841156 | MS.gene47826:CDS | 45.0% | |
| GATGGAGTGGAGACAACAAA+TGG | + | chr4.3:82841162-82841181 | MS.gene47826:CDS | 45.0% | |
| GCACATTGAAGCACAATGGA+TGG | + | chr4.3:82841099-82841118 | MS.gene47826:CDS | 45.0% | |
| GGAGAGAAAGGGAAGAACAA+AGG | + | chr4.3:82841224-82841243 | MS.gene47826:CDS | 45.0% | |
| GGAGTTTCTGATGATTCGAG+CGG | + | chr4.3:82839471-82839490 | MS.gene47826:CDS | 45.0% | |
| GTGATGTGAATGGCTTGAGA+CGG | - | chr4.3:82839118-82839137 | None:intergenic | 45.0% | |
| TGAATGGCTTGAGACGGAAA+AGG | - | chr4.3:82839112-82839131 | None:intergenic | 45.0% | |
| ! | CACTAATCTTTTGTGGGTGG+CGG | - | chr4.3:82837964-82837983 | None:intergenic | 45.0% |
| ! | CTTCATCGTCATCGGTTGAA+AGG | - | chr4.3:82840931-82840950 | None:intergenic | 45.0% |
| ! | TTATGGGCTGAAGCTGAAGA+CGG | + | chr4.3:82840884-82840903 | MS.gene47826:CDS | 45.0% |
| AAGAAGCTAGGGCTGAGAAG+AGG | + | chr4.3:82841257-82841276 | MS.gene47826:CDS | 50.0% | |
| ACCGATGACGATGAAGACGA+TGG | + | chr4.3:82840935-82840954 | MS.gene47826:CDS | 50.0% | |
| ACGATGCGTAGACGCAACAA+TGG | + | chr4.3:82837637-82837656 | MS.gene47826:intron | 50.0% | |
| AGAAGCTAGGGCTGAGAAGA+GGG | + | chr4.3:82841258-82841277 | MS.gene47826:CDS | 50.0% | |
| CGATGCGTAGACGCAACAAT+GGG | + | chr4.3:82837638-82837657 | MS.gene47826:intron | 50.0% | |
| GCAAAGGTAGACAGCGAAAG+CGG | + | chr4.3:82841013-82841032 | MS.gene47826:CDS | 50.0% | |
| GGCCTCAAAATGTGTTAGGC+CGG | + | chr4.3:82840372-82840391 | MS.gene47826:intron | 50.0% | |
| GTCTCTTGTATGCTCCACTG+AGG | - | chr4.3:82839448-82839467 | None:intergenic | 50.0% | |
| GTGGAGCATACAAGAGACGA+AGG | + | chr4.3:82839450-82839469 | MS.gene47826:CDS | 50.0% | |
| TGAAAGGAGGTTGAGGGAGA+TGG | + | chr4.3:82841144-82841163 | MS.gene47826:CDS | 50.0% | |
| TGAAGACGGGTCGAAGAAGA+AGG | + | chr4.3:82840898-82840917 | MS.gene47826:CDS | 50.0% | |
| ! | TATGGGCTGAAGCTGAAGAC+GGG | + | chr4.3:82840885-82840904 | MS.gene47826:CDS | 50.0% |
| ! | TGCCGGCCTAACACATTTTG+AGG | - | chr4.3:82840377-82840396 | None:intergenic | 50.0% |
| !! | AATCTTTTGTGGGTGGCGGT+CGG | - | chr4.3:82837960-82837979 | None:intergenic | 50.0% |
| AAATCCGAGGGCCTAAAGCG+AGG | - | chr4.3:82840023-82840042 | None:intergenic | 55.0% | |
| AATCCGAGGGCCTAAAGCGA+GGG | - | chr4.3:82840022-82840041 | None:intergenic | 55.0% | |
| GTAACCCAAGCCCTCGCTTT+AGG | + | chr4.3:82840009-82840028 | MS.gene47826:intron | 55.0% | |
| TTCCGCCAGTGCTGCACTTA+CGG | + | chr4.3:82840227-82840246 | MS.gene47826:intron | 55.0% | |
| ! | AAGTGCCGTAAGTGCAGCAC+TGG | - | chr4.3:82840235-82840254 | None:intergenic | 55.0% |
| !! | ATCTTTTGTGGGTGGCGGTC+GGG | - | chr4.3:82837959-82837978 | None:intergenic | 55.0% |
| !! | CGCTTTAGGCCCTCGGATTT+TGG | + | chr4.3:82840023-82840042 | MS.gene47826:intron | 55.0% |
| AGGGCCTAAAGCGAGGGCTT+GGG | - | chr4.3:82840016-82840035 | None:intergenic | 60.0% | |
| GGAGGTTGAGGGAGATGGAG+TGG | + | chr4.3:82841149-82841168 | MS.gene47826:CDS | 60.0% | |
| TCAGGGCTGGGCTAAGGGTA+AGG | + | chr4.3:82839987-82840006 | MS.gene47826:intron | 60.0% | |
| ! | AAGCCCTCGCTTTAGGCCCT+CGG | + | chr4.3:82840016-82840035 | MS.gene47826:intron | 60.0% |
| ! | TGCCGTAAGTGCAGCACTGG+CGG | - | chr4.3:82840232-82840251 | None:intergenic | 60.0% |
| !! | TCTTTTGTGGGTGGCGGTCG+GGG | - | chr4.3:82837958-82837977 | None:intergenic | 60.0% |
| GAGGGCCTAAAGCGAGGGCT+TGG | - | chr4.3:82840017-82840036 | None:intergenic | 65.0% | |
| !! | CTTTTGTGGGTGGCGGTCGG+GGG | - | chr4.3:82837957-82837976 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 82837594 | 82841324 | 82837594 | ID=MS.gene47826 |
| chr4.3 | mRNA | 82837594 | 82841324 | 82837594 | ID=MS.gene47826.t1;Parent=MS.gene47826 |
| chr4.3 | exon | 82837594 | 82837643 | 82837594 | ID=MS.gene47826.t1.exon1;Parent=MS.gene47826.t1 |
| chr4.3 | CDS | 82837594 | 82837643 | 82837594 | ID=cds.MS.gene47826.t1;Parent=MS.gene47826.t1 |
| chr4.3 | exon | 82839441 | 82839633 | 82839441 | ID=MS.gene47826.t1.exon2;Parent=MS.gene47826.t1 |
| chr4.3 | CDS | 82839441 | 82839633 | 82839441 | ID=cds.MS.gene47826.t1;Parent=MS.gene47826.t1 |
| chr4.3 | exon | 82840791 | 82841324 | 82840791 | ID=MS.gene47826.t1.exon3;Parent=MS.gene47826.t1 |
| chr4.3 | CDS | 82840791 | 82841324 | 82840791 | ID=cds.MS.gene47826.t1;Parent=MS.gene47826.t1 |
| Gene Sequence |
| Protein sequence |
