Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49378.t1 | XP_003590588.1 | 97.1 | 489 | 10 | 1 | 1 | 489 | 1 | 485 | 1.70E-219 | 771.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49378.t1 | Q8W4K5 | 62.7 | 493 | 163 | 11 | 7 | 489 | 11 | 492 | 7.1e-129 | 462.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49378.t1 | G7IDK3 | 97.1 | 489 | 10 | 1 | 1 | 489 | 1 | 485 | 1.3e-219 | 771.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene49378 | 0.809556 | 1.78E-50 | -1.69E-46 |
| MS.gene049821 | MS.gene49378 | 0.803774 | 2.97E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene49378 | 0.819902 | 9.10E-53 | -1.69E-46 |
| MS.gene050020 | MS.gene49378 | 0.833671 | 4.66E-56 | -1.69E-46 |
| MS.gene050807 | MS.gene49378 | 0.813135 | 2.98E-51 | -1.69E-46 |
| MS.gene050901 | MS.gene49378 | 0.82455 | 7.60E-54 | -1.69E-46 |
| MS.gene051018 | MS.gene49378 | 0.807955 | 3.92E-50 | -1.69E-46 |
| MS.gene051199 | MS.gene49378 | 0.82652 | 2.59E-54 | -1.69E-46 |
| MS.gene051247 | MS.gene49378 | 0.808193 | 3.49E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene49378 | 0.801846 | 7.42E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene49378 | 0.848766 | 4.97E-60 | -1.69E-46 |
| MS.gene051664 | MS.gene49378 | 0.802561 | 5.29E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene49378 | 0.854866 | 9.25E-62 | -1.69E-46 |
| MS.gene051720 | MS.gene49378 | 0.855961 | 4.44E-62 | -1.69E-46 |
| MS.gene051744 | MS.gene49378 | 0.821012 | 5.06E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene49378 | 0.801046 | 1.08E-48 | -1.69E-46 |
| MS.gene052665 | MS.gene49378 | 0.816076 | 6.66E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene49378 | 0.823513 | 1.33E-53 | -1.69E-46 |
| MS.gene053174 | MS.gene49378 | 0.821622 | 3.66E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene49378 | 0.823141 | 1.62E-53 | -1.69E-46 |
| MS.gene053581 | MS.gene49378 | 0.800807 | 1.21E-48 | -1.69E-46 |
| MS.gene054550 | MS.gene49378 | 0.828914 | 6.90E-55 | -1.69E-46 |
| MS.gene054584 | MS.gene49378 | 0.827245 | 1.74E-54 | -1.69E-46 |
| MS.gene054791 | MS.gene49378 | 0.808037 | 3.77E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene49378 | 0.830422 | 2.96E-55 | -1.69E-46 |
| MS.gene055466 | MS.gene49378 | 0.839412 | 1.61E-57 | -1.69E-46 |
| MS.gene055468 | MS.gene49378 | 0.813592 | 2.37E-51 | -1.69E-46 |
| MS.gene055537 | MS.gene49378 | 0.828195 | 1.03E-54 | -1.69E-46 |
| MS.gene055580 | MS.gene49378 | -0.810545 | 1.09E-50 | -1.69E-46 |
| MS.gene055890 | MS.gene49378 | 0.8259 | 3.64E-54 | -1.69E-46 |
| MS.gene056169 | MS.gene49378 | 0.806966 | 6.36E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene49378 | 0.816547 | 5.23E-52 | -1.69E-46 |
| MS.gene056366 | MS.gene49378 | 0.824126 | 9.55E-54 | -1.69E-46 |
| MS.gene057444 | MS.gene49378 | 0.808172 | 3.53E-50 | -1.69E-46 |
| MS.gene057915 | MS.gene49378 | 0.80513 | 1.55E-49 | -1.69E-46 |
| MS.gene05847 | MS.gene49378 | 0.805728 | 1.16E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene49378 | 0.810802 | 9.62E-51 | -1.69E-46 |
| MS.gene059154 | MS.gene49378 | 0.807762 | 4.31E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene49378 | 0.825661 | 4.15E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49378.t1 | MTR_1g071450 | 97.137 | 489 | 10 | 2 | 1 | 489 | 1 | 485 | 0.0 | 973 |
| MS.gene49378.t1 | MTR_7g095500 | 76.891 | 476 | 88 | 11 | 1 | 472 | 1 | 458 | 0.0 | 625 |
| MS.gene49378.t1 | MTR_1g041395 | 65.171 | 468 | 145 | 7 | 26 | 487 | 13 | 468 | 2.84e-158 | 457 |
| MS.gene49378.t1 | MTR_1g041395 | 65.171 | 468 | 144 | 7 | 26 | 487 | 13 | 467 | 7.90e-158 | 456 |
| MS.gene49378.t1 | MTR_1g041395 | 64.619 | 472 | 147 | 7 | 26 | 487 | 13 | 474 | 1.20e-157 | 456 |
| MS.gene49378.t1 | MTR_1g102980 | 61.290 | 465 | 149 | 8 | 24 | 487 | 20 | 454 | 6.36e-136 | 400 |
| MS.gene49378.t1 | MTR_1g041395 | 73.000 | 300 | 80 | 1 | 188 | 487 | 39 | 337 | 1.24e-112 | 336 |
| MS.gene49378.t1 | MTR_1g102980 | 65.569 | 334 | 102 | 4 | 155 | 487 | 8 | 329 | 4.85e-100 | 304 |
| MS.gene49378.t1 | MTR_3g110182 | 38.242 | 455 | 198 | 12 | 26 | 478 | 33 | 406 | 3.21e-67 | 222 |
| MS.gene49378.t1 | MTR_4g039910 | 47.692 | 260 | 101 | 6 | 188 | 438 | 100 | 333 | 1.00e-51 | 179 |
| MS.gene49378.t1 | MTR_3g110182 | 37.817 | 394 | 163 | 11 | 26 | 417 | 31 | 344 | 3.42e-45 | 162 |
| MS.gene49378.t1 | MTR_5g012870 | 37.417 | 302 | 148 | 7 | 189 | 481 | 113 | 382 | 5.52e-43 | 157 |
| MS.gene49378.t1 | MTR_7g095630 | 68.750 | 64 | 19 | 1 | 91 | 153 | 83 | 146 | 1.69e-19 | 87.0 |
| MS.gene49378.t1 | MTR_7g095630 | 57.812 | 64 | 21 | 2 | 208 | 269 | 140 | 199 | 1.26e-11 | 64.3 |
| MS.gene49378.t1 | MTR_4g019730 | 58.621 | 58 | 22 | 1 | 404 | 461 | 1 | 56 | 1.90e-15 | 73.2 |
| MS.gene49378.t1 | MTR_4g129510 | 31.741 | 293 | 158 | 7 | 189 | 479 | 118 | 370 | 6.46e-14 | 73.6 |
| MS.gene49378.t1 | MTR_4g129510 | 31.741 | 293 | 158 | 7 | 189 | 479 | 87 | 339 | 4.69e-13 | 70.9 |
| MS.gene49378.t1 | MTR_4g129510 | 36.620 | 213 | 102 | 3 | 189 | 400 | 118 | 298 | 1.50e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49378.t1 | AT3G22810 | 63.048 | 479 | 156 | 10 | 14 | 486 | 6 | 469 | 0.0 | 515 |
| MS.gene49378.t1 | AT4G14740 | 63.057 | 471 | 154 | 10 | 24 | 486 | 16 | 474 | 2.24e-172 | 494 |
| MS.gene49378.t1 | AT4G14740 | 63.057 | 471 | 154 | 10 | 24 | 486 | 16 | 474 | 2.24e-172 | 494 |
| MS.gene49378.t1 | AT3G63300 | 62.475 | 493 | 164 | 11 | 7 | 489 | 11 | 492 | 1.34e-164 | 475 |
| MS.gene49378.t1 | AT5G43870 | 58.861 | 474 | 153 | 11 | 19 | 486 | 15 | 452 | 3.72e-148 | 431 |
| MS.gene49378.t1 | AT3G22810 | 62.774 | 411 | 132 | 10 | 14 | 418 | 6 | 401 | 7.94e-140 | 409 |
| MS.gene49378.t1 | AT3G22810 | 66.265 | 332 | 108 | 3 | 156 | 486 | 3 | 331 | 1.48e-135 | 395 |
| MS.gene49378.t1 | AT4G14740 | 61.881 | 404 | 134 | 10 | 24 | 419 | 16 | 407 | 6.80e-133 | 390 |
| MS.gene49378.t1 | AT4G14740 | 66.964 | 336 | 103 | 4 | 156 | 486 | 3 | 335 | 9.90e-132 | 385 |
| MS.gene49378.t1 | AT5G43870 | 58.128 | 406 | 130 | 10 | 19 | 419 | 15 | 385 | 8.79e-112 | 336 |
| MS.gene49378.t1 | AT3G63300 | 63.824 | 340 | 112 | 7 | 155 | 489 | 1 | 334 | 9.50e-109 | 327 |
| MS.gene49378.t1 | AT4G17350 | 36.544 | 353 | 166 | 10 | 138 | 480 | 82 | 386 | 1.24e-41 | 154 |
| MS.gene49378.t1 | AT4G32780 | 34.361 | 454 | 204 | 10 | 26 | 478 | 35 | 395 | 6.10e-41 | 152 |
| MS.gene49378.t1 | AT4G32780 | 35.242 | 454 | 200 | 10 | 26 | 478 | 54 | 414 | 1.13e-40 | 151 |
| MS.gene49378.t1 | AT4G16670 | 35.644 | 303 | 163 | 8 | 189 | 481 | 132 | 412 | 4.00e-38 | 144 |
| MS.gene49378.t1 | AT5G47440 | 34.421 | 337 | 181 | 8 | 157 | 481 | 79 | 387 | 9.52e-38 | 143 |
| MS.gene49378.t1 | AT4G16670 | 37.083 | 240 | 120 | 7 | 189 | 418 | 132 | 350 | 3.47e-26 | 109 |
| MS.gene49378.t1 | AT4G16670 | 33.086 | 269 | 120 | 8 | 189 | 418 | 132 | 379 | 1.17e-20 | 94.0 |
| MS.gene49378.t1 | AT5G57770 | 33.793 | 290 | 157 | 6 | 141 | 428 | 82 | 338 | 3.08e-20 | 93.2 |
| MS.gene49378.t1 | AT5G57770 | 33.577 | 274 | 150 | 5 | 141 | 412 | 82 | 325 | 1.71e-19 | 90.1 |
Find 79 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAAAGAACCACCATTTAA+TGG | 0.205078 | 1.1:+53727689 | None:intergenic |
| ACCAAATAAGGATGAGAAAA+TGG | 0.261318 | 1.1:-53726410 | MS.gene49378:CDS |
| CAGCATGAAGTTGAGCATTA+TGG | 0.291068 | 1.1:+53726500 | None:intergenic |
| TTAAATGGTGGTTCTTTAAC+AGG | 0.293923 | 1.1:-53727686 | MS.gene49378:CDS |
| GCTCTTGTACCATTGAATAA+AGG | 0.299178 | 1.1:+53726625 | None:intergenic |
| TTCCTCTAGCAAGAAGTTCT+TGG | 0.299562 | 1.1:+53725470 | None:intergenic |
| GACAATCTACCTGATGTTAA+TGG | 0.299992 | 1.1:+53727725 | None:intergenic |
| TCCTCTAAAAGATGCCTTCC+TGG | 0.305425 | 1.1:+53725011 | None:intergenic |
| AGAAACTCCATTGGTATTCT+AGG | 0.306883 | 1.1:+53728195 | None:intergenic |
| AGCATCAACTACACCAAATA+AGG | 0.313923 | 1.1:-53726422 | MS.gene49378:CDS |
| CCTTGATATATGCAGCTCTA+AGG | 0.317117 | 1.1:-53725678 | MS.gene49378:intron |
| AACTCATCAGAAGGAGAAAT+TGG | 0.321795 | 1.1:+53727650 | None:intergenic |
| GAAGGAGGAGGTGGTGGTTG+AGG | 0.346886 | 1.1:+53728123 | None:intergenic |
| CATAGCAGTGAACCATTAAA+TGG | 0.367882 | 1.1:-53727701 | MS.gene49378:CDS |
| GGCAATGCAACTCCTTGTTC+AGG | 0.369214 | 1.1:-53726586 | MS.gene49378:CDS |
| AGAGTAGTAATACTTTCTTC+AGG | 0.380242 | 1.1:+53728060 | None:intergenic |
| TTATTTGTAGAAGACTTAGA+AGG | 0.384237 | 1.1:+53728090 | None:intergenic |
| CTTGAGAAAAGCATAGGAAT+TGG | 0.387663 | 1.1:-53725589 | MS.gene49378:CDS |
| CTCTTGTACCATTGAATAAA+GGG | 0.392154 | 1.1:+53726626 | None:intergenic |
| TCCATACACCCTTTATTCAA+TGG | 0.400317 | 1.1:-53726634 | MS.gene49378:CDS |
| CAAGAAGAAGGAGGAGGTGG+TGG | 0.403057 | 1.1:+53728117 | None:intergenic |
| AGAGCTATGAGTAGTGGAAT+TGG | 0.425775 | 1.1:-53726607 | MS.gene49378:CDS |
| GAAAATGGCTAAGACTGATA+TGG | 0.426643 | 1.1:-53726395 | MS.gene49378:CDS |
| TGGAGTTTCTTTCAAGGTCA+TGG | 0.443835 | 1.1:-53728182 | MS.gene49378:CDS |
| ACCATTGAATAAAGGGTGTA+TGG | 0.446282 | 1.1:+53726633 | None:intergenic |
| TATCTGTAGGTGATCTTCAC+TGG | 0.451022 | 1.1:-53725334 | MS.gene49378:intron |
| TCTGTTTATATACATCGAAC+CGG | 0.472832 | 1.1:-53725302 | MS.gene49378:CDS |
| AAGCAAGAAGAAGGAGGAGG+TGG | 0.473902 | 1.1:+53728114 | None:intergenic |
| GTGTTGCCATTGTTATTTGT+TGG | 0.477598 | 1.1:+53728234 | None:intergenic |
| ATTGGTATTCTAGGACTCTC+TGG | 0.477798 | 1.1:+53728204 | None:intergenic |
| TGACAATGGATAGTTAACTT+TGG | 0.480512 | 1.1:+53728273 | None:intergenic |
| CTTGATATATGCAGCTCTAA+GGG | 0.484756 | 1.1:-53725677 | MS.gene49378:intron |
| AGTTCTAGCACTAGTGAAAG+TGG | 0.488106 | 1.1:-53725535 | MS.gene49378:CDS |
| TACCAATGGAGTTTCTTTCA+AGG | 0.496026 | 1.1:-53728188 | MS.gene49378:CDS |
| ATTGGAATATGTGGTGGTAA+AGG | 0.499899 | 1.1:-53725571 | MS.gene49378:CDS |
| TGCCATTGTTATTTGTTGGA+AGG | 0.506542 | 1.1:+53728238 | None:intergenic |
| AGCATAGGAATTGGAATATG+TGG | 0.506802 | 1.1:-53725580 | MS.gene49378:CDS |
| GGTACTCATTTCTATGACAA+TGG | 0.513249 | 1.1:+53728259 | None:intergenic |
| TGAGTTTGACGATGTAGTTA+AGG | 0.514953 | 1.1:-53727633 | MS.gene49378:intron |
| AGATGCCTTCCTGGCCAAGC+TGG | 0.516445 | 1.1:+53725020 | None:intergenic |
| TGTGCACAAATTTACCAGCT+TGG | 0.518454 | 1.1:-53725034 | MS.gene49378:CDS |
| ACAAATTTACCAGCTTGGCC+AGG | 0.521574 | 1.1:-53725029 | MS.gene49378:CDS |
| GAAGTATCTCCATTAACATC+AGG | 0.524731 | 1.1:-53727734 | MS.gene49378:CDS |
| TAGTTTAGTTACCTCTCTTG+CGG | 0.541433 | 1.1:+53727945 | None:intergenic |
| CTAACTGCTGCAGCTGCCAC+AGG | 0.549453 | 1.1:-53726238 | MS.gene49378:intron |
| TTATATACATCGAACCGGCC+AGG | 0.552074 | 1.1:-53725297 | MS.gene49378:intron |
| TTAGAAGGTAAGCAAGAAGA+AGG | 0.556769 | 1.1:+53728105 | None:intergenic |
| GACCTAAAACAGTAGGAAGA+TGG | 0.556861 | 1.1:-53726564 | MS.gene49378:CDS |
| CAAGATTTCTCAAACATGTG+TGG | 0.561026 | 1.1:-53728033 | MS.gene49378:CDS |
| ATGAAAAGCAGACATGTAGC+AGG | 0.561812 | 1.1:-53725180 | MS.gene49378:CDS |
| GGTAAGCAAGAAGAAGGAGG+AGG | 0.564082 | 1.1:+53728111 | None:intergenic |
| TGTTGAAGCTGCTGAAGCAA+TGG | 0.569846 | 1.1:-53726335 | MS.gene49378:CDS |
| TCATCAGAAGGAGAAATTGG+TGG | 0.570671 | 1.1:+53727653 | None:intergenic |
| TTACTCAAACGCACTCGCAA+AGG | 0.576539 | 1.1:-53725442 | MS.gene49378:intron |
| CACTAGTGAAAGTGGAGGAG+AGG | 0.579388 | 1.1:-53725527 | MS.gene49378:CDS |
| ATTTACCAGCTTGGCCAGGA+AGG | 0.579688 | 1.1:-53725025 | MS.gene49378:CDS |
| TTCTTTCCATTGTTTCACAC+AGG | 0.583564 | 1.1:-53724878 | MS.gene49378:CDS |
| GGCTAAGACTGATATGGCTG+TGG | 0.584637 | 1.1:-53726389 | MS.gene49378:CDS |
| GACCTTGAAAGAAACTCCAT+TGG | 0.585295 | 1.1:+53728186 | None:intergenic |
| GTTGAAGCTGCTGAAGCAAT+GGG | 0.585546 | 1.1:-53726334 | MS.gene49378:CDS |
| TGATATATGCAGCTCTAAGG+GGG | 0.594778 | 1.1:-53725675 | MS.gene49378:intron |
| AGAGAGTCCTAGAATACCAA+TGG | 0.596028 | 1.1:-53728202 | MS.gene49378:CDS |
| CAAGAGCAATGAAAGAGATG+TGG | 0.596042 | 1.1:-53725636 | MS.gene49378:CDS |
| ACATCGTCAAACTCATCAGA+AGG | 0.598042 | 1.1:+53727641 | None:intergenic |
| GGTACAAGAGCTATGAGTAG+TGG | 0.599275 | 1.1:-53726613 | MS.gene49378:CDS |
| TGTTCAGGACCTAAAACAGT+AGG | 0.601269 | 1.1:-53726571 | MS.gene49378:CDS |
| AGCCAAGAACTTCTTGCTAG+AGG | 0.604636 | 1.1:-53725472 | MS.gene49378:CDS |
| TTGATATATGCAGCTCTAAG+GGG | 0.610071 | 1.1:-53725676 | MS.gene49378:intron |
| ACACCACTTGAGAAAAGCAT+AGG | 0.613376 | 1.1:-53725595 | MS.gene49378:CDS |
| CATGTCACAATCCGCAAGAG+AGG | 0.623909 | 1.1:-53727956 | MS.gene49378:intron |
| TACCTTCCAACAAATAACAA+TGG | 0.629115 | 1.1:-53728240 | MS.gene49378:CDS |
| GAAGGTAAGCAAGAAGAAGG+AGG | 0.632750 | 1.1:+53728108 | None:intergenic |
| GAATATGAATTGTGGACACA+AGG | 0.633773 | 1.1:-53724912 | MS.gene49378:CDS |
| ATAGGAATTGGAATATGTGG+TGG | 0.638819 | 1.1:-53725577 | MS.gene49378:CDS |
| TCTAGCACTAGTGAAAGTGG+AGG | 0.643530 | 1.1:-53725532 | MS.gene49378:CDS |
| CAGAACTAACAACAGAAGCA+AGG | 0.657396 | 1.1:+53726296 | None:intergenic |
| AGCAGTGAACCATTAAATGG+TGG | 0.669009 | 1.1:-53727698 | MS.gene49378:CDS |
| GATATATGCAGCTCTAAGGG+GGG | 0.694136 | 1.1:-53725674 | MS.gene49378:intron |
| GGATTGAAGACAGAATCAAG+AGG | 0.704203 | 1.1:-53724966 | MS.gene49378:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCATTAATTAAAAGAAT+TGG | + | chr1.1:53726444-53726463 | None:intergenic | 10.0% |
| !! | TATATAAAAAAAATAAAGGT+TGG | + | chr1.1:53726988-53727007 | None:intergenic | 10.0% |
| !!! | TTTAAAATTTTAGTAGAAAT+TGG | - | chr1.1:53727875-53727894 | MS.gene49378:intron | 10.0% |
| !! | CAAAATGATTAAACTATATT+TGG | - | chr1.1:53727772-53727791 | MS.gene49378:intron | 15.0% |
| !!! | AAAGTAGTACTATTTTATTA+TGG | + | chr1.1:53725827-53725846 | None:intergenic | 15.0% |
| !!! | GTTTTTTGTTTATAGTAATT+TGG | - | chr1.1:53725354-53725373 | MS.gene49378:intron | 15.0% |
| !! | AAAAAATCATACTACAAAAC+AGG | + | chr1.1:53727404-53727423 | None:intergenic | 20.0% |
| !! | ATAAAATAGTACTACTTTCT+TGG | - | chr1.1:53725829-53725848 | MS.gene49378:intron | 20.0% |
| !! | ATATGAACAAAATGTGTAAT+TGG | + | chr1.1:53726012-53726031 | None:intergenic | 20.0% |
| !! | CATAGAAATAATAACTCATT+GGG | - | chr1.1:53728043-53728062 | MS.gene49378:CDS | 20.0% |
| !! | TCATAGAAATAATAACTCAT+TGG | - | chr1.1:53728042-53728061 | MS.gene49378:CDS | 20.0% |
| !! | TTAAAGAACAAAAAATTACC+TGG | + | chr1.1:53727860-53727879 | None:intergenic | 20.0% |
| !!! | ACTCTTTTTCTTTTTTGTAA+TGG | + | chr1.1:53727984-53728003 | None:intergenic | 20.0% |
| !!! | ATATTATTTATTTAGGGTAG+TGG | - | chr1.1:53727137-53727156 | MS.gene49378:intron | 20.0% |
| !!! | ATTATTTCTATGATATTGCA+AGG | + | chr1.1:53728035-53728054 | None:intergenic | 20.0% |
| !!! | CAAATGTTTGTAACAATTTT+AGG | - | chr1.1:53727922-53727941 | MS.gene49378:intron | 20.0% |
| !!! | TAAAGTTTGTTTTATGTAAC+AGG | - | chr1.1:53725380-53725399 | MS.gene49378:intron | 20.0% |
| !!! | TCAGATTTTTTTTATTCAGA+TGG | - | chr1.1:53726417-53726436 | MS.gene49378:CDS | 20.0% |
| ! | AAAATGTGTAATTGGATTCA+TGG | + | chr1.1:53726004-53726023 | None:intergenic | 25.0% |
| ! | AATCTCGATTAGAAAATGTA+TGG | + | chr1.1:53727174-53727193 | None:intergenic | 25.0% |
| ! | ACCAAAAAGAATATGAATTG+TGG | - | chr1.1:53728216-53728235 | MS.gene49378:CDS | 25.0% |
| ! | ACTACTTTCTTGGTTTAATA+TGG | - | chr1.1:53725839-53725858 | MS.gene49378:intron | 25.0% |
| ! | ATATGTAGGAAAAGACTTAA+GGG | - | chr1.1:53725246-53725265 | MS.gene49378:intron | 25.0% |
| ! | CTGTAAAGAATCAACTAATA+AGG | - | chr1.1:53727337-53727356 | MS.gene49378:intron | 25.0% |
| ! | GTTAAAAAATGTCACAATGT+TGG | - | chr1.1:53726961-53726980 | MS.gene49378:intron | 25.0% |
| ! | TATATGTAGGAAAAGACTTA+AGG | - | chr1.1:53725245-53725264 | MS.gene49378:intron | 25.0% |
| ! | TTACAACAGTAACAATACTT+TGG | - | chr1.1:53725888-53725907 | MS.gene49378:intron | 25.0% |
| ! | TTATTTGTAGAAGACTTAGA+AGG | + | chr1.1:53725049-53725068 | None:intergenic | 25.0% |
| ! | TTCCTACATATACTTCAAAA+GGG | + | chr1.1:53725237-53725256 | None:intergenic | 25.0% |
| ! | TTTCCTACATATACTTCAAA+AGG | + | chr1.1:53725238-53725257 | None:intergenic | 25.0% |
| !! | ATTTTTACCAGATATTGTGT+TGG | - | chr1.1:53728076-53728095 | MS.gene49378:CDS | 25.0% |
| !! | TCCACAATTCATATTCTTTT+TGG | + | chr1.1:53728220-53728239 | None:intergenic | 25.0% |
| !! | TGAACTTTGAACATAACTTT+TGG | - | chr1.1:53726167-53726186 | MS.gene49378:intron | 25.0% |
| !! | TTTGAACATAACTTTTGGAT+GGG | - | chr1.1:53726172-53726191 | MS.gene49378:intron | 25.0% |
| !!! | AGACATTGTTATTCTTTTCA+AGG | - | chr1.1:53725326-53725345 | MS.gene49378:CDS | 25.0% |
| !!! | TGTTATTCTTTTCAAGGTTT+TGG | - | chr1.1:53725332-53725351 | MS.gene49378:intron | 25.0% |
| AAAACTAAATCTAGCAGCAA+GGG | - | chr1.1:53725708-53725727 | MS.gene49378:intron | 30.0% | |
| AAGTCATAAGCTATAACACT+AGG | + | chr1.1:53726117-53726136 | None:intergenic | 30.0% | |
| AATCAGAAGATAAGGTACAT+TGG | + | chr1.1:53726303-53726322 | None:intergenic | 30.0% | |
| AATGAAGAAAATTCTACCTG+TGG | + | chr1.1:53726917-53726936 | None:intergenic | 30.0% | |
| ACCAAATAAGGATGAGAAAA+TGG | - | chr1.1:53726726-53726745 | MS.gene49378:intron | 30.0% | |
| AGAGTAGTAATACTTTCTTC+AGG | + | chr1.1:53725079-53725098 | None:intergenic | 30.0% | |
| AGTAAATTGTACACCACTAA+TGG | - | chr1.1:53726044-53726063 | MS.gene49378:intron | 30.0% | |
| AGTAGAAATTGGAATTCAGT+TGG | - | chr1.1:53727886-53727905 | MS.gene49378:intron | 30.0% | |
| CTCTTGTACCATTGAATAAA+GGG | + | chr1.1:53726513-53726532 | None:intergenic | 30.0% | |
| GAAAATATGCCAAAATGAGA+AGG | + | chr1.1:53726337-53726356 | None:intergenic | 30.0% | |
| GTAACAATACTTTGGTATAG+AGG | - | chr1.1:53725896-53725915 | MS.gene49378:intron | 30.0% | |
| GTAGAAATTGGAATTCAGTT+GGG | - | chr1.1:53727887-53727906 | MS.gene49378:intron | 30.0% | |
| GTTAAAGAACCACCATTTAA+TGG | + | chr1.1:53725450-53725469 | None:intergenic | 30.0% | |
| TACCTTCCAACAAATAACAA+TGG | - | chr1.1:53724896-53724915 | MS.gene49378:CDS | 30.0% | |
| TCCTACATATACTTCAAAAG+GGG | + | chr1.1:53725236-53725255 | None:intergenic | 30.0% | |
| TCTGTTTATATACATCGAAC+CGG | - | chr1.1:53727834-53727853 | MS.gene49378:intron | 30.0% | |
| TGACAATGGATAGTTAACTT+TGG | + | chr1.1:53724866-53724885 | None:intergenic | 30.0% | |
| TTAAATGGTGGTTCTTTAAC+AGG | - | chr1.1:53725450-53725469 | MS.gene49378:CDS | 30.0% | |
| TTTCCTAGTTAAATGCTGAA+GGG | + | chr1.1:53726379-53726398 | None:intergenic | 30.0% | |
| ! | ATTTGGTGATTGATATCTGT+AGG | - | chr1.1:53727789-53727808 | MS.gene49378:intron | 30.0% |
| ! | CTTTGAACATAACTTTTGGA+TGG | - | chr1.1:53726171-53726190 | MS.gene49378:intron | 30.0% |
| ! | TACTTTGGTATAGAGGTTTT+TGG | - | chr1.1:53725903-53725922 | MS.gene49378:intron | 30.0% |
| ! | TTTTCCTAGTTAAATGCTGA+AGG | + | chr1.1:53726380-53726399 | None:intergenic | 30.0% |
| !! | ACTGCAACAATTGTTTCTAA+GGG | + | chr1.1:53725572-53725591 | None:intergenic | 30.0% |
| !! | ATTTATTTAGGGTAGTGGAA+GGG | - | chr1.1:53727142-53727161 | MS.gene49378:intron | 30.0% |
| !! | TATTTATTTAGGGTAGTGGA+AGG | - | chr1.1:53727141-53727160 | MS.gene49378:intron | 30.0% |
| !!! | GGTGAAAAAAGAAGGTATTT+TGG | - | chr1.1:53728149-53728168 | MS.gene49378:CDS | 30.0% |
| !!! | GTTAGCTCTTTTTTTTTGTC+AGG | + | chr1.1:53726089-53726108 | None:intergenic | 30.0% |
| !!! | TCTTTTTTTTTGTCAGGTAG+TGG | + | chr1.1:53726083-53726102 | None:intergenic | 30.0% |
| AAACATGTGATCCAAAAGTG+AGG | + | chr1.1:53725799-53725818 | None:intergenic | 35.0% | |
| AACTCATCAGAAGGAGAAAT+TGG | + | chr1.1:53725489-53725508 | None:intergenic | 35.0% | |
| ACCACATTGGCAATATAACA+AGG | + | chr1.1:53727434-53727453 | None:intergenic | 35.0% | |
| AGAAACTCCATTGGTATTCT+AGG | + | chr1.1:53724944-53724963 | None:intergenic | 35.0% | |
| AGAACAAAAAATTACCTGGC+CGG | + | chr1.1:53727856-53727875 | None:intergenic | 35.0% | |
| AGCATAGGAATTGGAATATG+TGG | - | chr1.1:53727556-53727575 | MS.gene49378:intron | 35.0% | |
| AGCATCAACTACACCAAATA+AGG | - | chr1.1:53726714-53726733 | MS.gene49378:intron | 35.0% | |
| AGGAATGTTCATGTTACACA+TGG | - | chr1.1:53727357-53727376 | MS.gene49378:intron | 35.0% | |
| ATAGGAATTGGAATATGTGG+TGG | - | chr1.1:53727559-53727578 | MS.gene49378:intron | 35.0% | |
| ATATGCCAAAATGAGAAGGT+TGG | + | chr1.1:53726333-53726352 | None:intergenic | 35.0% | |
| ATTGGAATATGTGGTGGTAA+AGG | - | chr1.1:53727565-53727584 | MS.gene49378:intron | 35.0% | |
| ATTGGCAATATAACAAGGAC+AGG | + | chr1.1:53727429-53727448 | None:intergenic | 35.0% | |
| CAAAACTAAATCTAGCAGCA+AGG | - | chr1.1:53725707-53725726 | MS.gene49378:intron | 35.0% | |
| CAACCCAAAACAAAAGGTAA+GGG | + | chr1.1:53725541-53725560 | None:intergenic | 35.0% | |
| CAAGATTTCTCAAACATGTG+TGG | - | chr1.1:53725103-53725122 | MS.gene49378:intron | 35.0% | |
| CATAGCAGTGAACCATTAAA+TGG | - | chr1.1:53725435-53725454 | MS.gene49378:intron | 35.0% | |
| GAAAATGGCTAAGACTGATA+TGG | - | chr1.1:53726741-53726760 | MS.gene49378:intron | 35.0% | |
| GAATATGAATTGTGGACACA+AGG | - | chr1.1:53728224-53728243 | MS.gene49378:CDS | 35.0% | |
| GACAATCTACCTGATGTTAA+TGG | + | chr1.1:53725414-53725433 | None:intergenic | 35.0% | |
| GCTCTTGTACCATTGAATAA+AGG | + | chr1.1:53726514-53726533 | None:intergenic | 35.0% | |
| GGTACTCATTTCTATGACAA+TGG | + | chr1.1:53724880-53724899 | None:intergenic | 35.0% | |
| GGTGACTGCTTAACTTTATA+AGG | + | chr1.1:53727207-53727226 | None:intergenic | 35.0% | |
| TACCAATGGAGTTTCTTTCA+AGG | - | chr1.1:53724948-53724967 | MS.gene49378:CDS | 35.0% | |
| TAGAGGATGGTGAAAAAAGA+AGG | - | chr1.1:53728141-53728160 | MS.gene49378:CDS | 35.0% | |
| TAGTTTAGTTACCTCTCTTG+CGG | + | chr1.1:53725194-53725213 | None:intergenic | 35.0% | |
| TCACACAGGAAAAACAGAAA+TGG | - | chr1.1:53728272-53728291 | MS.gene49378:CDS | 35.0% | |
| TCCATACACCCTTTATTCAA+TGG | - | chr1.1:53726502-53726521 | MS.gene49378:CDS | 35.0% | |
| TGAGTTTGACGATGTAGTTA+AGG | - | chr1.1:53725503-53725522 | MS.gene49378:CDS | 35.0% | |
| TTAGAAGGTAAGCAAGAAGA+AGG | + | chr1.1:53725034-53725053 | None:intergenic | 35.0% | |
| TTCTAATCGAGATTCGAACT+CGG | - | chr1.1:53727180-53727199 | MS.gene49378:intron | 35.0% | |
| TTCTTTCCATTGTTTCACAC+AGG | - | chr1.1:53728258-53728277 | MS.gene49378:CDS | 35.0% | |
| ! | AAAGCATTAGAGACCATTAG+TGG | + | chr1.1:53726060-53726079 | None:intergenic | 35.0% |
| ! | AACCATCTTCCTACTGTTTT+AGG | + | chr1.1:53726577-53726596 | None:intergenic | 35.0% |
| ! | ACCATTGAATAAAGGGTGTA+TGG | + | chr1.1:53726506-53726525 | None:intergenic | 35.0% |
| ! | ATGTTACACATGGTTTGTCA+GGG | - | chr1.1:53727367-53727386 | MS.gene49378:intron | 35.0% |
| ! | ATTCCTATGCTTTTCTCAAG+TGG | + | chr1.1:53727547-53727566 | None:intergenic | 35.0% |
| ! | CTTGAGAAAAGCATAGGAAT+TGG | - | chr1.1:53727547-53727566 | MS.gene49378:intron | 35.0% |
| ! | CTTGATATATGCAGCTCTAA+GGG | - | chr1.1:53727459-53727478 | MS.gene49378:intron | 35.0% |
| ! | GAAGTATCTCCATTAACATC+AGG | - | chr1.1:53725402-53725421 | MS.gene49378:intron | 35.0% |
| ! | GTTTTTCCTGTGTGAAACAA+TGG | + | chr1.1:53728267-53728286 | None:intergenic | 35.0% |
| ! | TCCTTGTTATATTGCCAATG+TGG | - | chr1.1:53727430-53727449 | MS.gene49378:intron | 35.0% |
| !! | GACTGCAACAATTGTTTCTA+AGG | + | chr1.1:53725573-53725592 | None:intergenic | 35.0% |
| !! | GCCATTTTCTCATCCTTATT+TGG | + | chr1.1:53726730-53726749 | None:intergenic | 35.0% |
| !! | GGTGTACAATTTACTTTTGC+AGG | + | chr1.1:53726039-53726058 | None:intergenic | 35.0% |
| !! | GTGTTGCCATTGTTATTTGT+TGG | + | chr1.1:53724905-53724924 | None:intergenic | 35.0% |
| !! | TGCCATTGTTATTTGTTGGA+AGG | + | chr1.1:53724901-53724920 | None:intergenic | 35.0% |
| !! | TGTTCCCTTACCTTTTGTTT+TGG | - | chr1.1:53725534-53725553 | MS.gene49378:CDS | 35.0% |
| !! | TTGATATATGCAGCTCTAAG+GGG | - | chr1.1:53727460-53727479 | MS.gene49378:intron | 35.0% |
| !!! | ACCCCTTTTGAAGTATATGT+AGG | - | chr1.1:53725232-53725251 | MS.gene49378:intron | 35.0% |
| !!! | GTTCCCTTACCTTTTGTTTT+GGG | - | chr1.1:53725535-53725554 | MS.gene49378:CDS | 35.0% |
| ACATCGTCAAACTCATCAGA+AGG | + | chr1.1:53725498-53725517 | None:intergenic | 40.0% | |
| AGAGAGTCCTAGAATACCAA+TGG | - | chr1.1:53724934-53724953 | MS.gene49378:CDS | 40.0% | |
| AGAGCTGCATATATCAAGGA+AGG | + | chr1.1:53727457-53727476 | None:intergenic | 40.0% | |
| AGCAGTGAACCATTAAATGG+TGG | - | chr1.1:53725438-53725457 | MS.gene49378:intron | 40.0% | |
| ATATCAAGGAAGGACCACAT+TGG | + | chr1.1:53727447-53727466 | None:intergenic | 40.0% | |
| ATGAAAAGCAGACATGTAGC+AGG | - | chr1.1:53727956-53727975 | MS.gene49378:intron | 40.0% | |
| CAAGAGCAATGAAAGAGATG+TGG | - | chr1.1:53727500-53727519 | MS.gene49378:intron | 40.0% | |
| CAAGAGGAAGATACTAGACA+GGG | + | chr1.1:53725773-53725792 | None:intergenic | 40.0% | |
| CACACATCCAACACAATATC+TGG | + | chr1.1:53728086-53728105 | None:intergenic | 40.0% | |
| CAGAACTAACAACAGAAGCA+AGG | + | chr1.1:53726843-53726862 | None:intergenic | 40.0% | |
| CAGCATGAAGTTGAGCATTA+TGG | + | chr1.1:53726639-53726658 | None:intergenic | 40.0% | |
| CCAACCCAAAACAAAAGGTA+AGG | + | chr1.1:53725542-53725561 | None:intergenic | 40.0% | |
| CCTTAGAGCTGCATATATCA+AGG | + | chr1.1:53727461-53727480 | None:intergenic | 40.0% | |
| CCTTGATATATGCAGCTCTA+AGG | - | chr1.1:53727458-53727477 | MS.gene49378:intron | 40.0% | |
| GACCTAAAACAGTAGGAAGA+TGG | - | chr1.1:53726572-53726591 | MS.gene49378:CDS | 40.0% | |
| GACCTTGAAAGAAACTCCAT+TGG | + | chr1.1:53724953-53724972 | None:intergenic | 40.0% | |
| GGATTGAAGACAGAATCAAG+AGG | - | chr1.1:53728170-53728189 | MS.gene49378:CDS | 40.0% | |
| GTAGGAAAAGACTTAAGGGA+GGG | - | chr1.1:53725250-53725269 | MS.gene49378:intron | 40.0% | |
| GTTGCGTGAATCAGAAGATA+AGG | + | chr1.1:53726311-53726330 | None:intergenic | 40.0% | |
| TATCTGTAGGTGATCTTCAC+TGG | - | chr1.1:53727802-53727821 | MS.gene49378:intron | 40.0% | |
| TCATCAGAAGGAGAAATTGG+TGG | + | chr1.1:53725486-53725505 | None:intergenic | 40.0% | |
| TGGAGTTTCTTTCAAGGTCA+TGG | - | chr1.1:53724954-53724973 | MS.gene49378:CDS | 40.0% | |
| TGTAGGAAAAGACTTAAGGG+AGG | - | chr1.1:53725249-53725268 | MS.gene49378:intron | 40.0% | |
| TGTGCACAAATTTACCAGCT+TGG | - | chr1.1:53728102-53728121 | MS.gene49378:CDS | 40.0% | |
| TGTTCAGGACCTAAAACAGT+AGG | - | chr1.1:53726565-53726584 | MS.gene49378:CDS | 40.0% | |
| TTCCTCTAGCAAGAAGTTCT+TGG | + | chr1.1:53727669-53727688 | None:intergenic | 40.0% | |
| ! | ACACCACTTGAGAAAAGCAT+AGG | - | chr1.1:53727541-53727560 | MS.gene49378:intron | 40.0% |
| ! | AGAGCTATGAGTAGTGGAAT+TGG | - | chr1.1:53726529-53726548 | MS.gene49378:CDS | 40.0% |
| ! | AGTTCTAGCACTAGTGAAAG+TGG | - | chr1.1:53727601-53727620 | MS.gene49378:intron | 40.0% |
| ! | CATGTTACACATGGTTTGTC+AGG | - | chr1.1:53727366-53727385 | MS.gene49378:intron | 40.0% |
| ! | TGTTACACATGGTTTGTCAG+GGG | - | chr1.1:53727368-53727387 | MS.gene49378:intron | 40.0% |
| !! | ACTGTTTTAGGTCCTGAACA+AGG | + | chr1.1:53726565-53726584 | None:intergenic | 40.0% |
| !! | ATTGGTATTCTAGGACTCTC+TGG | + | chr1.1:53724935-53724954 | None:intergenic | 40.0% |
| !! | TGATATATGCAGCTCTAAGG+GGG | - | chr1.1:53727461-53727480 | MS.gene49378:intron | 40.0% |
| !!! | CCTTACCTTTTGTTTTGGGT+TGG | - | chr1.1:53725539-53725558 | MS.gene49378:CDS | 40.0% |
| !!! | CTTTTGTTTTGGGTTGGAGT+GGG | - | chr1.1:53725545-53725564 | MS.gene49378:CDS | 40.0% |
| ACAAATTTACCAGCTTGGCC+AGG | - | chr1.1:53728107-53728126 | MS.gene49378:CDS | 45.0% | |
| AGCCAAGAACTTCTTGCTAG+AGG | - | chr1.1:53727664-53727683 | MS.gene49378:CDS | 45.0% | |
| CCACTCCAACCCAAAACAAA+AGG | + | chr1.1:53725547-53725566 | None:intergenic | 45.0% | |
| CTGTCTAACAATCAGCAAGC+AGG | + | chr1.1:53726259-53726278 | None:intergenic | 45.0% | |
| GAAGGTAAGCAAGAAGAAGG+AGG | + | chr1.1:53725031-53725050 | None:intergenic | 45.0% | |
| GCAAGAGGAAGATACTAGAC+AGG | + | chr1.1:53725774-53725793 | None:intergenic | 45.0% | |
| GCTCCCTTCAGCATTTAACT+AGG | - | chr1.1:53726373-53726392 | MS.gene49378:CDS | 45.0% | |
| GGTACAAGAGCTATGAGTAG+TGG | - | chr1.1:53726523-53726542 | MS.gene49378:CDS | 45.0% | |
| GTTGAAGCTGCTGAAGCAAT+GGG | - | chr1.1:53726802-53726821 | MS.gene49378:intron | 45.0% | |
| TCCAAAAGTGAGGTTGCAAG+AGG | + | chr1.1:53725789-53725808 | None:intergenic | 45.0% | |
| TCTAGCACTAGTGAAAGTGG+AGG | - | chr1.1:53727604-53727623 | MS.gene49378:intron | 45.0% | |
| TGTTGAAGCTGCTGAAGCAA+TGG | - | chr1.1:53726801-53726820 | MS.gene49378:intron | 45.0% | |
| TTACTCAAACGCACTCGCAA+AGG | - | chr1.1:53727694-53727713 | MS.gene49378:CDS | 45.0% | |
| TTATATACATCGAACCGGCC+AGG | - | chr1.1:53727839-53727858 | MS.gene49378:intron | 45.0% | |
| ! | CGCAACCAACCTTCTCATTT+TGG | - | chr1.1:53726325-53726344 | MS.gene49378:CDS | 45.0% |
| ! | CTTGCTGATTGTTAGACAGC+AGG | - | chr1.1:53726260-53726279 | MS.gene49378:CDS | 45.0% |
| ! | TCCTCTAAAAGATGCCTTCC+TGG | + | chr1.1:53728128-53728147 | None:intergenic | 45.0% |
| ! | TCCTCTTGCAACCTCACTTT+TGG | - | chr1.1:53725785-53725804 | MS.gene49378:intron | 45.0% |
| !! | GATATATGCAGCTCTAAGGG+GGG | - | chr1.1:53727462-53727481 | MS.gene49378:intron | 45.0% |
| !!! | CCTTTTGTTTTGGGTTGGAG+TGG | - | chr1.1:53725544-53725563 | MS.gene49378:CDS | 45.0% |
| !!! | GGAAGGCATCTTTTAGAGGA+TGG | - | chr1.1:53728128-53728147 | MS.gene49378:CDS | 45.0% |
| !! | ATTATTCATATTATTTATTT+AGG | - | chr1.1:53727130-53727149 | MS.gene49378:intron | 5.0% |
| !! | TTATTCATATTATTTATTTA+GGG | - | chr1.1:53727131-53727150 | MS.gene49378:intron | 5.0% |
| !! | TTCATATATAAAAAAAATAA+AGG | + | chr1.1:53726992-53727011 | None:intergenic | 5.0% |
| AAGCAAGAAGAAGGAGGAGG+TGG | + | chr1.1:53725025-53725044 | None:intergenic | 50.0% | |
| AATCAGCAAGCAGGCAGGTT+TGG | + | chr1.1:53726250-53726269 | None:intergenic | 50.0% | |
| AGGAAGATACTAGACAGGGC+CGG | + | chr1.1:53725769-53725788 | None:intergenic | 50.0% | |
| ATTTACCAGCTTGGCCAGGA+AGG | - | chr1.1:53728111-53728130 | MS.gene49378:CDS | 50.0% | |
| CACTAGTGAAAGTGGAGGAG+AGG | - | chr1.1:53727609-53727628 | MS.gene49378:intron | 50.0% | |
| CATGTCACAATCCGCAAGAG+AGG | - | chr1.1:53725180-53725199 | MS.gene49378:CDS | 50.0% | |
| CTAACAATCAGCAAGCAGGC+AGG | + | chr1.1:53726255-53726274 | None:intergenic | 50.0% | |
| GGCAATGCAACTCCTTGTTC+AGG | - | chr1.1:53726550-53726569 | MS.gene49378:CDS | 50.0% | |
| GGCTAAGACTGATATGGCTG+TGG | - | chr1.1:53726747-53726766 | MS.gene49378:intron | 50.0% | |
| GGTAAGCAAGAAGAAGGAGG+AGG | + | chr1.1:53725028-53725047 | None:intergenic | 50.0% | |
| ! | TTTCGTGTGTGATAGCGCAG+TGG | + | chr1.1:53727228-53727247 | None:intergenic | 50.0% |
| !!! | GCCAGGAAGGCATCTTTTAG+AGG | - | chr1.1:53728124-53728143 | MS.gene49378:CDS | 50.0% |
| AATCTAGCAGCAAGGGCCCT+AGG | - | chr1.1:53725715-53725734 | MS.gene49378:intron | 55.0% | |
| CAAGAAGAAGGAGGAGGTGG+TGG | + | chr1.1:53725022-53725041 | None:intergenic | 55.0% | |
| ! | AGCAGGCAGGTTTGGTTGAC+AGG | + | chr1.1:53726242-53726261 | None:intergenic | 55.0% |
| AGATGCCTTCCTGGCCAAGC+TGG | + | chr1.1:53728119-53728138 | None:intergenic | 60.0% | |
| CTAACTGCTGCAGCTGCCAC+AGG | - | chr1.1:53726898-53726917 | MS.gene49378:intron | 60.0% | |
| TCACCCCCGGCCTATGCTTA+GGG | - | chr1.1:53725743-53725762 | MS.gene49378:intron | 60.0% | |
| ! | GAAGGAGGAGGTGGTGGTTG+AGG | + | chr1.1:53725016-53725035 | None:intergenic | 60.0% |
| AAGCATAGGCCGGGGGTGAG+AGG | + | chr1.1:53725742-53725761 | None:intergenic | 65.0% | |
| ACAGGGCCGGCCCTAAGCAT+AGG | + | chr1.1:53725756-53725775 | None:intergenic | 65.0% | |
| CTCACCCCCGGCCTATGCTT+AGG | - | chr1.1:53725742-53725761 | MS.gene49378:intron | 65.0% | |
| CCCCGGCCTATGCTTAGGGC+CGG | - | chr1.1:53725747-53725766 | MS.gene49378:intron | 70.0% | |
| CCGGCCCTAAGCATAGGCCG+GGG | + | chr1.1:53725750-53725769 | None:intergenic | 70.0% | |
| CGGCCCTAAGCATAGGCCGG+GGG | + | chr1.1:53725749-53725768 | None:intergenic | 70.0% | |
| GCCCTAGGTCCTCTCACCCC+CGG | - | chr1.1:53725730-53725749 | MS.gene49378:intron | 70.0% | |
| GCCGGCCCTAAGCATAGGCC+GGG | + | chr1.1:53725751-53725770 | None:intergenic | 70.0% | |
| GCCGGGGGTGAGAGGACCTA+GGG | + | chr1.1:53725734-53725753 | None:intergenic | 70.0% | |
| GGCCGGCCCTAAGCATAGGC+CGG | + | chr1.1:53725752-53725771 | None:intergenic | 70.0% | |
| GGCCGGGGGTGAGAGGACCT+AGG | + | chr1.1:53725735-53725754 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 53724857 | 53728301 | 53724857 | ID=MS.gene49378 |
| chr1.1 | mRNA | 53724857 | 53728301 | 53724857 | ID=MS.gene49378.t1;Parent=MS.gene49378 |
| chr1.1 | exon | 53727957 | 53728301 | 53727957 | ID=MS.gene49378.t1.exon1;Parent=MS.gene49378.t1 |
| chr1.1 | CDS | 53727957 | 53728301 | 53727957 | ID=cds.MS.gene49378.t1;Parent=MS.gene49378.t1 |
| chr1.1 | exon | 53727634 | 53727756 | 53727634 | ID=MS.gene49378.t1.exon2;Parent=MS.gene49378.t1 |
| chr1.1 | CDS | 53727634 | 53727756 | 53727634 | ID=cds.MS.gene49378.t1;Parent=MS.gene49378.t1 |
| chr1.1 | exon | 53726239 | 53726674 | 53726239 | ID=MS.gene49378.t1.exon3;Parent=MS.gene49378.t1 |
| chr1.1 | CDS | 53726239 | 53726674 | 53726239 | ID=cds.MS.gene49378.t1;Parent=MS.gene49378.t1 |
| chr1.1 | exon | 53725443 | 53725685 | 53725443 | ID=MS.gene49378.t1.exon4;Parent=MS.gene49378.t1 |
| chr1.1 | CDS | 53725443 | 53725685 | 53725443 | ID=cds.MS.gene49378.t1;Parent=MS.gene49378.t1 |
| chr1.1 | exon | 53725298 | 53725347 | 53725298 | ID=MS.gene49378.t1.exon5;Parent=MS.gene49378.t1 |
| chr1.1 | CDS | 53725298 | 53725347 | 53725298 | ID=cds.MS.gene49378.t1;Parent=MS.gene49378.t1 |
| chr1.1 | exon | 53725157 | 53725214 | 53725157 | ID=MS.gene49378.t1.exon6;Parent=MS.gene49378.t1 |
| chr1.1 | CDS | 53725157 | 53725214 | 53725157 | ID=cds.MS.gene49378.t1;Parent=MS.gene49378.t1 |
| chr1.1 | exon | 53724857 | 53725071 | 53724857 | ID=MS.gene49378.t1.exon7;Parent=MS.gene49378.t1 |
| chr1.1 | CDS | 53724857 | 53725071 | 53724857 | ID=cds.MS.gene49378.t1;Parent=MS.gene49378.t1 |
| Gene Sequence |
| Protein sequence |
