Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49634.t1 | GAU49420.1 | 76.4 | 233 | 46 | 3 | 1 | 225 | 1 | 232 | 4.10E-91 | 344.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49634.t1 | Q9FUS8 | 53.2 | 220 | 95 | 2 | 1 | 213 | 1 | 219 | 2.3e-58 | 226.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49634.t1 | A0A2Z6PF61 | 76.4 | 233 | 46 | 3 | 1 | 225 | 1 | 232 | 3.0e-91 | 344.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene49634 | 0.87839 | 2.92E-69 | -1.69E-46 |
| MS.gene05016 | MS.gene49634 | 0.819127 | 1.37E-52 | -1.69E-46 |
| MS.gene050584 | MS.gene49634 | 0.844417 | 7.66E-59 | -1.69E-46 |
| MS.gene050585 | MS.gene49634 | 0.829047 | 6.40E-55 | -1.69E-46 |
| MS.gene050586 | MS.gene49634 | 0.829895 | 3.99E-55 | -1.69E-46 |
| MS.gene050587 | MS.gene49634 | 0.842885 | 1.97E-58 | -1.69E-46 |
| MS.gene050807 | MS.gene49634 | 0.837114 | 6.29E-57 | -1.69E-46 |
| MS.gene050808 | MS.gene49634 | 0.81087 | 9.30E-51 | -1.69E-46 |
| MS.gene051789 | MS.gene49634 | 0.846745 | 1.79E-59 | -1.69E-46 |
| MS.gene052142 | MS.gene49634 | 0.834574 | 2.77E-56 | -1.69E-46 |
| MS.gene052665 | MS.gene49634 | 0.823256 | 1.53E-53 | -1.69E-46 |
| MS.gene053074 | MS.gene49634 | 0.839427 | 1.60E-57 | -1.69E-46 |
| MS.gene053174 | MS.gene49634 | 0.804933 | 1.70E-49 | -1.69E-46 |
| MS.gene053383 | MS.gene49634 | 0.817849 | 2.66E-52 | -1.69E-46 |
| MS.gene053630 | MS.gene49634 | 0.82218 | 2.72E-53 | -1.69E-46 |
| MS.gene05456 | MS.gene49634 | 0.86571 | 4.85E-65 | -1.69E-46 |
| MS.gene054596 | MS.gene49634 | 0.808932 | 2.43E-50 | -1.69E-46 |
| MS.gene055359 | MS.gene49634 | 0.84063 | 7.74E-58 | -1.69E-46 |
| MS.gene056643 | MS.gene49634 | 0.803272 | 3.77E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene49634 | 0.824573 | 7.50E-54 | -1.69E-46 |
| MS.gene058168 | MS.gene49634 | 0.809502 | 1.83E-50 | -1.69E-46 |
| MS.gene059006 | MS.gene49634 | 0.860151 | 2.52E-63 | -1.69E-46 |
| MS.gene059124 | MS.gene49634 | 0.806425 | 8.28E-50 | -1.69E-46 |
| MS.gene061176 | MS.gene49634 | 0.804937 | 1.70E-49 | -1.69E-46 |
| MS.gene061177 | MS.gene49634 | 0.80388 | 2.82E-49 | -1.69E-46 |
| MS.gene061178 | MS.gene49634 | 0.804571 | 2.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49634.t1 | MTR_5g037380 | 74.569 | 232 | 48 | 2 | 1 | 225 | 1 | 228 | 1.14e-119 | 340 |
| MS.gene49634.t1 | MTR_8g061950 | 54.274 | 234 | 96 | 3 | 1 | 225 | 1 | 232 | 1.38e-82 | 246 |
| MS.gene49634.t1 | MTR_7g065720 | 42.060 | 233 | 115 | 5 | 1 | 222 | 1 | 224 | 2.35e-51 | 166 |
| MS.gene49634.t1 | MTR_7g065740 | 41.202 | 233 | 119 | 5 | 1 | 223 | 1 | 225 | 1.62e-49 | 161 |
| MS.gene49634.t1 | MTR_7g065660 | 38.793 | 232 | 125 | 4 | 1 | 223 | 1 | 224 | 4.59e-49 | 160 |
| MS.gene49634.t1 | MTR_1g090100 | 42.222 | 225 | 115 | 4 | 6 | 222 | 3 | 220 | 1.14e-48 | 159 |
| MS.gene49634.t1 | MTR_7g065600 | 38.528 | 231 | 125 | 4 | 1 | 222 | 1 | 223 | 1.92e-48 | 159 |
| MS.gene49634.t1 | MTR_1g090060 | 41.518 | 224 | 118 | 5 | 5 | 221 | 3 | 220 | 2.23e-47 | 156 |
| MS.gene49634.t1 | MTR_7g065590 | 39.394 | 231 | 123 | 4 | 1 | 222 | 1 | 223 | 8.86e-47 | 154 |
| MS.gene49634.t1 | MTR_3g099757 | 40.265 | 226 | 128 | 3 | 1 | 223 | 1 | 222 | 1.14e-46 | 154 |
| MS.gene49634.t1 | MTR_1g090070 | 38.767 | 227 | 125 | 5 | 5 | 223 | 9 | 229 | 3.70e-46 | 153 |
| MS.gene49634.t1 | MTR_1g115195 | 42.254 | 213 | 109 | 4 | 5 | 209 | 3 | 209 | 3.90e-46 | 152 |
| MS.gene49634.t1 | MTR_1g090090 | 39.556 | 225 | 121 | 4 | 5 | 221 | 3 | 220 | 2.10e-45 | 151 |
| MS.gene49634.t1 | MTR_8g087410 | 39.269 | 219 | 118 | 4 | 1 | 212 | 2 | 212 | 3.56e-45 | 150 |
| MS.gene49634.t1 | MTR_7g065290 | 38.528 | 231 | 125 | 4 | 1 | 222 | 1 | 223 | 4.94e-45 | 150 |
| MS.gene49634.t1 | MTR_7g065270 | 38.961 | 231 | 124 | 4 | 1 | 222 | 1 | 223 | 1.15e-44 | 149 |
| MS.gene49634.t1 | MTR_4g019790 | 39.912 | 228 | 118 | 6 | 5 | 223 | 7 | 224 | 1.22e-44 | 149 |
| MS.gene49634.t1 | MTR_7g065265 | 38.961 | 231 | 124 | 4 | 1 | 222 | 1 | 223 | 3.72e-44 | 147 |
| MS.gene49634.t1 | MTR_7g065260 | 40.343 | 233 | 119 | 7 | 1 | 222 | 8 | 231 | 4.61e-44 | 147 |
| MS.gene49634.t1 | MTR_7g065750 | 38.298 | 235 | 123 | 5 | 1 | 223 | 1 | 225 | 1.11e-43 | 146 |
| MS.gene49634.t1 | MTR_7g065640 | 37.069 | 232 | 111 | 5 | 1 | 223 | 1 | 206 | 1.31e-43 | 145 |
| MS.gene49634.t1 | MTR_4g019780 | 39.462 | 223 | 119 | 4 | 1 | 214 | 1 | 216 | 2.85e-43 | 145 |
| MS.gene49634.t1 | MTR_8g087425 | 38.073 | 218 | 120 | 3 | 1 | 211 | 1 | 210 | 7.73e-43 | 144 |
| MS.gene49634.t1 | MTR_7g065230 | 38.095 | 231 | 121 | 6 | 1 | 222 | 1 | 218 | 8.62e-43 | 144 |
| MS.gene49634.t1 | MTR_7g065710 | 37.850 | 214 | 113 | 5 | 1 | 207 | 1 | 201 | 8.51e-42 | 141 |
| MS.gene49634.t1 | MTR_6g080440 | 37.118 | 229 | 126 | 5 | 4 | 222 | 2 | 222 | 4.38e-41 | 140 |
| MS.gene49634.t1 | MTR_4g059730 | 37.387 | 222 | 128 | 4 | 3 | 218 | 2 | 218 | 1.55e-40 | 138 |
| MS.gene49634.t1 | MTR_7g065630 | 34.061 | 229 | 132 | 4 | 2 | 223 | 22 | 238 | 2.16e-40 | 138 |
| MS.gene49634.t1 | MTR_2g070180 | 41.346 | 208 | 106 | 5 | 8 | 208 | 7 | 205 | 3.42e-40 | 137 |
| MS.gene49634.t1 | MTR_2g070150 | 40.000 | 215 | 107 | 6 | 3 | 207 | 2 | 204 | 5.89e-40 | 136 |
| MS.gene49634.t1 | MTR_3g467420 | 40.566 | 212 | 110 | 5 | 14 | 218 | 18 | 220 | 7.98e-40 | 136 |
| MS.gene49634.t1 | MTR_5g040430 | 35.586 | 222 | 132 | 5 | 3 | 216 | 5 | 223 | 3.90e-39 | 135 |
| MS.gene49634.t1 | MTR_2g070060 | 37.963 | 216 | 118 | 5 | 3 | 211 | 2 | 208 | 6.54e-39 | 134 |
| MS.gene49634.t1 | MTR_3g467430 | 38.596 | 228 | 118 | 6 | 1 | 218 | 5 | 220 | 1.66e-38 | 133 |
| MS.gene49634.t1 | MTR_2g070200 | 36.000 | 225 | 128 | 5 | 3 | 219 | 2 | 218 | 1.27e-37 | 130 |
| MS.gene49634.t1 | MTR_7g065680 | 35.398 | 226 | 127 | 4 | 5 | 223 | 7 | 220 | 2.45e-37 | 130 |
| MS.gene49634.t1 | MTR_2g070140 | 40.299 | 201 | 104 | 6 | 18 | 211 | 1 | 192 | 2.72e-37 | 129 |
| MS.gene49634.t1 | MTR_2g070110 | 37.037 | 216 | 119 | 5 | 4 | 212 | 3 | 208 | 3.37e-37 | 129 |
| MS.gene49634.t1 | MTR_7g065700 | 37.037 | 216 | 117 | 4 | 5 | 213 | 7 | 210 | 8.73e-37 | 129 |
| MS.gene49634.t1 | MTR_1g090150 | 37.555 | 229 | 123 | 5 | 5 | 223 | 3 | 221 | 5.41e-36 | 127 |
| MS.gene49634.t1 | MTR_2g070070 | 37.788 | 217 | 119 | 6 | 3 | 212 | 2 | 209 | 1.09e-35 | 125 |
| MS.gene49634.t1 | MTR_2g070130 | 40.488 | 205 | 100 | 7 | 14 | 208 | 13 | 205 | 1.53e-35 | 125 |
| MS.gene49634.t1 | MTR_2g070210 | 41.063 | 207 | 104 | 7 | 14 | 211 | 13 | 210 | 1.70e-35 | 125 |
| MS.gene49634.t1 | MTR_2g070120 | 40.000 | 205 | 107 | 7 | 14 | 211 | 13 | 208 | 3.90e-34 | 122 |
| MS.gene49634.t1 | MTR_5g076900 | 35.714 | 210 | 117 | 6 | 14 | 215 | 15 | 214 | 8.59e-34 | 121 |
| MS.gene49634.t1 | MTR_8g056940 | 35.874 | 223 | 129 | 6 | 3 | 219 | 2 | 216 | 8.32e-33 | 118 |
| MS.gene49634.t1 | MTR_4g124130 | 36.073 | 219 | 133 | 6 | 4 | 219 | 3 | 217 | 5.19e-32 | 116 |
| MS.gene49634.t1 | MTR_5g037390 | 76.712 | 73 | 17 | 0 | 29 | 101 | 11 | 83 | 1.04e-31 | 112 |
| MS.gene49634.t1 | MTR_0186s0030 | 53.535 | 99 | 44 | 2 | 3 | 101 | 2 | 98 | 3.19e-24 | 94.0 |
| MS.gene49634.t1 | MTR_2g072120 | 62.264 | 53 | 18 | 1 | 49 | 101 | 2 | 52 | 1.22e-16 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49634.t1 | AT1G10360 | 54.091 | 220 | 93 | 2 | 1 | 213 | 1 | 219 | 4.61e-77 | 231 |
| MS.gene49634.t1 | AT1G10370 | 54.545 | 220 | 92 | 2 | 1 | 213 | 1 | 219 | 4.27e-76 | 229 |
| MS.gene49634.t1 | AT1G59700 | 46.288 | 229 | 114 | 3 | 5 | 225 | 6 | 233 | 1.95e-66 | 205 |
| MS.gene49634.t1 | AT1G59670 | 46.847 | 222 | 109 | 3 | 5 | 218 | 6 | 226 | 8.55e-65 | 201 |
| MS.gene49634.t1 | AT1G69930 | 47.442 | 215 | 104 | 3 | 6 | 213 | 13 | 225 | 6.54e-59 | 186 |
| MS.gene49634.t1 | AT1G27130 | 44.843 | 223 | 111 | 4 | 1 | 213 | 1 | 221 | 3.62e-57 | 181 |
| MS.gene49634.t1 | AT1G27140 | 41.667 | 228 | 120 | 4 | 1 | 217 | 1 | 226 | 6.18e-54 | 173 |
| MS.gene49634.t1 | AT1G69920 | 40.724 | 221 | 120 | 3 | 2 | 213 | 31 | 249 | 1.95e-50 | 165 |
| MS.gene49634.t1 | AT3G09270 | 38.028 | 213 | 127 | 3 | 6 | 215 | 7 | 217 | 1.01e-40 | 139 |
| MS.gene49634.t1 | AT2G29420 | 34.529 | 223 | 133 | 3 | 3 | 219 | 7 | 222 | 4.09e-39 | 135 |
| MS.gene49634.t1 | AT2G29490 | 38.208 | 212 | 117 | 4 | 6 | 210 | 8 | 212 | 5.79e-38 | 132 |
| MS.gene49634.t1 | AT2G29470 | 38.222 | 225 | 122 | 7 | 6 | 221 | 8 | 224 | 2.09e-37 | 130 |
| MS.gene49634.t1 | AT1G78340 | 38.278 | 209 | 107 | 5 | 14 | 212 | 13 | 209 | 9.89e-37 | 128 |
| MS.gene49634.t1 | AT2G29480 | 36.364 | 220 | 126 | 4 | 6 | 218 | 8 | 220 | 1.38e-36 | 128 |
| MS.gene49634.t1 | AT2G29460 | 37.054 | 224 | 125 | 6 | 4 | 219 | 6 | 221 | 2.00e-36 | 128 |
| MS.gene49634.t1 | AT2G29450 | 35.398 | 226 | 131 | 4 | 5 | 222 | 6 | 224 | 2.07e-36 | 128 |
| MS.gene49634.t1 | AT1G17170 | 37.500 | 216 | 118 | 5 | 3 | 211 | 2 | 207 | 3.89e-35 | 124 |
| MS.gene49634.t1 | AT1G78320 | 38.614 | 202 | 110 | 5 | 14 | 209 | 13 | 206 | 6.02e-35 | 124 |
| MS.gene49634.t1 | AT1G78380 | 35.556 | 225 | 129 | 5 | 3 | 220 | 2 | 217 | 6.60e-35 | 124 |
| MS.gene49634.t1 | AT1G17180 | 36.620 | 213 | 119 | 6 | 14 | 219 | 13 | 216 | 1.01e-34 | 123 |
| MS.gene49634.t1 | AT1G78370 | 33.659 | 205 | 122 | 4 | 14 | 212 | 13 | 209 | 1.02e-34 | 123 |
| MS.gene49634.t1 | AT3G43800 | 36.530 | 219 | 123 | 6 | 1 | 210 | 1 | 212 | 2.27e-34 | 122 |
| MS.gene49634.t1 | AT2G29440 | 34.956 | 226 | 131 | 6 | 5 | 222 | 6 | 223 | 8.88e-34 | 121 |
| MS.gene49634.t1 | AT1G53680 | 35.407 | 209 | 111 | 5 | 14 | 210 | 16 | 212 | 2.89e-33 | 119 |
| MS.gene49634.t1 | AT5G62480 | 33.624 | 229 | 130 | 5 | 4 | 217 | 7 | 228 | 4.88e-33 | 119 |
| MS.gene49634.t1 | AT1G17190 | 35.747 | 221 | 120 | 6 | 1 | 211 | 1 | 209 | 3.59e-32 | 117 |
| MS.gene49634.t1 | AT1G78360 | 37.559 | 213 | 116 | 6 | 8 | 212 | 7 | 210 | 1.25e-31 | 115 |
| MS.gene49634.t1 | AT1G74590 | 29.412 | 221 | 148 | 3 | 8 | 222 | 10 | 228 | 8.52e-30 | 111 |
| MS.gene49634.t1 | AT1G78320 | 30.693 | 202 | 99 | 5 | 14 | 209 | 13 | 179 | 3.79e-19 | 82.0 |
| MS.gene49634.t1 | AT5G62480 | 27.074 | 229 | 118 | 5 | 4 | 217 | 7 | 201 | 1.02e-17 | 79.0 |
| MS.gene49634.t1 | AT5G62480 | 26.638 | 229 | 120 | 5 | 4 | 217 | 7 | 202 | 2.23e-17 | 77.8 |
Find 37 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGAGCCATTGCGAAATTT+TGG | 0.144442 | 5.1:+28215059 | MS.gene49634:CDS |
| TCCACAAGTTTATCAGTTTC+TGG | 0.176738 | 5.1:-28215719 | None:intergenic |
| CTGAAGAAGCAAGTCACTTT+TGG | 0.216096 | 5.1:-28214897 | None:intergenic |
| CTTCTTTGACTCTTCATCTT+TGG | 0.228379 | 5.1:-28215447 | None:intergenic |
| TTGAATATATTGATGAAGTT+TGG | 0.240973 | 5.1:+28214993 | MS.gene49634:CDS |
| TACAAATGACTTGAAGCTTT+TGG | 0.262387 | 5.1:+28214784 | MS.gene49634:CDS |
| AAAATTCCAGTTCTCATTCA+TGG | 0.281479 | 5.1:+28214938 | MS.gene49634:CDS |
| AATCCAATCCTTTGATGTTA+AGG | 0.308526 | 5.1:-28214847 | None:intergenic |
| AGACTCCAGCTTTGGTGAAA+TGG | 0.311703 | 5.1:+28215654 | MS.gene49634:CDS |
| GACTCCAGCTTTGGTGAAAT+GGG | 0.333466 | 5.1:+28215655 | MS.gene49634:CDS |
| GGAAGAAGTTCTTGAGAAGT+TGG | 0.342710 | 5.1:+28215487 | MS.gene49634:CDS |
| ATCCAATCCTTTGATGTTAA+GGG | 0.362609 | 5.1:-28214846 | None:intergenic |
| TGCCCTTAACATCAAAGGAT+TGG | 0.392813 | 5.1:+28214844 | MS.gene49634:CDS |
| GACCCTCAACCAACTCAAAT+AGG | 0.392914 | 5.1:-28215591 | None:intergenic |
| GAAACATTTCCCAATTACTT+TGG | 0.406351 | 5.1:-28215782 | None:intergenic |
| GGTCCTATTTGAGTTGGTTG+AGG | 0.441711 | 5.1:+28215588 | MS.gene49634:CDS |
| GTCCTATTTGAGTTGGTTGA+GGG | 0.442650 | 5.1:+28215589 | MS.gene49634:CDS |
| TTATCTCCATGAATGAGAAC+TGG | 0.442961 | 5.1:-28214944 | None:intergenic |
| TCAGCCCATTTCACCAAAGC+TGG | 0.450590 | 5.1:-28215659 | None:intergenic |
| GCATTTGAAGGAAGAATTGA+GGG | 0.456921 | 5.1:-28215031 | None:intergenic |
| TGGTATAATTCCTCGCGAAA+TGG | 0.461119 | 5.1:+28215416 | MS.gene49634:CDS |
| TAGCAAGTATAGTGAAGAAA+AGG | 0.473052 | 5.1:+28215520 | MS.gene49634:CDS |
| TGAAACAAAGACTCCAGCTT+TGG | 0.477233 | 5.1:+28215646 | MS.gene49634:CDS |
| GGTAGAATTCCTTTCACAGC+AGG | 0.479065 | 5.1:-28215698 | None:intergenic |
| TAAACTTGTGGAGTTTGCTA+AGG | 0.485321 | 5.1:+28215730 | MS.gene49634:CDS |
| TATGATTGCAGATTCACAAA+TGG | 0.490176 | 5.1:-28214969 | None:intergenic |
| AGCATTTGAAGGAAGAATTG+AGG | 0.502372 | 5.1:-28215032 | None:intergenic |
| AAAATTGCCCTTAACATCAA+AGG | 0.511770 | 5.1:+28214839 | MS.gene49634:CDS |
| GCTGCTCATCCTGCTGTGAA+AGG | 0.525289 | 5.1:+28215689 | MS.gene49634:CDS |
| GCTCGATCATAAGCATTTGA+AGG | 0.528885 | 5.1:-28215043 | None:intergenic |
| AAACTTGTGGAGTTTGCTAA+GGG | 0.551366 | 5.1:+28215731 | MS.gene49634:CDS |
| ACCAGAAACTGATAAACTTG+TGG | 0.558982 | 5.1:+28215718 | MS.gene49634:CDS |
| AGGGTCACTGAGAAAATGAC+AGG | 0.565602 | 5.1:+28215608 | MS.gene49634:CDS |
| CAAAGATGAAGAGTCAAAGA+AGG | 0.584288 | 5.1:+28215448 | MS.gene49634:CDS |
| CTTAATACAAATGGACTGAA+CGG | 0.585122 | 5.1:-28214812 | None:intergenic |
| GGCAATCAAACCATTTCGCG+AGG | 0.614236 | 5.1:-28215426 | None:intergenic |
| GGCAACCCAAAATTTCGCAA+TGG | 0.635242 | 5.1:-28215065 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGACAAAAATTTATAA+AGG | - | chr5.1:28215139-28215158 | None:intergenic | 10.0% |
| !! | ACAAACACTAAATATTTATA+CGG | - | chr5.1:28215262-28215281 | None:intergenic | 15.0% |
| !!! | ATTTTTACTCTTAATACAAA+TGG | - | chr5.1:28214824-28214843 | None:intergenic | 15.0% |
| !! | TTGAATATATTGATGAAGTT+TGG | + | chr5.1:28214993-28215012 | MS.gene49634:CDS | 20.0% |
| !!! | ATATTGTTTGTCATTGTTTT+TGG | + | chr5.1:28215375-28215394 | MS.gene49634:intron | 20.0% |
| !!! | GATTTATTGATTTTGCTTTT+GGG | + | chr5.1:28215567-28215586 | MS.gene49634:CDS | 20.0% |
| ! | GATGAAGTTTGGAAAAATAA+TGG | + | chr5.1:28215004-28215023 | MS.gene49634:CDS | 25.0% |
| !!! | CATTGTTTTTGGTTTCAATT+GGG | + | chr5.1:28215386-28215405 | MS.gene49634:intron | 25.0% |
| !!! | GGATTTATTGATTTTGCTTT+TGG | + | chr5.1:28215566-28215585 | MS.gene49634:CDS | 25.0% |
| !!! | TCATTGTTTTTGGTTTCAAT+TGG | + | chr5.1:28215385-28215404 | MS.gene49634:intron | 25.0% |
| AAAATTCCAGTTCTCATTCA+TGG | + | chr5.1:28214938-28214957 | MS.gene49634:CDS | 30.0% | |
| AAAATTGCCCTTAACATCAA+AGG | + | chr5.1:28214839-28214858 | MS.gene49634:CDS | 30.0% | |
| AATCCAATCCTTTGATGTTA+AGG | - | chr5.1:28214850-28214869 | None:intergenic | 30.0% | |
| ATCCAATCCTTTGATGTTAA+GGG | - | chr5.1:28214849-28214868 | None:intergenic | 30.0% | |
| GACAAACAATATGATTCAGT+AGG | - | chr5.1:28215367-28215386 | None:intergenic | 30.0% | |
| TAGCAAGTATAGTGAAGAAA+AGG | + | chr5.1:28215520-28215539 | MS.gene49634:CDS | 30.0% | |
| TATGATTGCAGATTCACAAA+TGG | - | chr5.1:28214972-28214991 | None:intergenic | 30.0% | |
| TGAGAAAATGACAGGAAAAA+AGG | + | chr5.1:28215616-28215635 | MS.gene49634:CDS | 30.0% | |
| ! | AAATAACTTGTCATCGATGT+AGG | - | chr5.1:28215089-28215108 | None:intergenic | 30.0% |
| ! | ACAAATGACTTGAAGCTTTT+GGG | + | chr5.1:28214785-28214804 | MS.gene49634:CDS | 30.0% |
| ! | TACAAATGACTTGAAGCTTT+TGG | + | chr5.1:28214784-28214803 | MS.gene49634:CDS | 30.0% |
| !! | CTTAATACAAATGGACTGAA+CGG | - | chr5.1:28214815-28214834 | None:intergenic | 30.0% |
| !!! | ACTGGAATTTTTTTGTACAC+AGG | - | chr5.1:28214929-28214948 | None:intergenic | 30.0% |
| !!! | AGTGAAGAAAAGGTCTTTTT+TGG | + | chr5.1:28215530-28215549 | MS.gene49634:CDS | 30.0% |
| !!! | TTTTTTGGAGGAGAGAAAAT+TGG | + | chr5.1:28215545-28215564 | MS.gene49634:CDS | 30.0% |
| ACCAGAAACTGATAAACTTG+TGG | + | chr5.1:28215718-28215737 | MS.gene49634:CDS | 35.0% | |
| AGCATTTGAAGGAAGAATTG+AGG | - | chr5.1:28215035-28215054 | None:intergenic | 35.0% | |
| CAAAGATGAAGAGTCAAAGA+AGG | + | chr5.1:28215448-28215467 | MS.gene49634:CDS | 35.0% | |
| CTTCTTTGACTCTTCATCTT+TGG | - | chr5.1:28215450-28215469 | None:intergenic | 35.0% | |
| GCATTTGAAGGAAGAATTGA+GGG | - | chr5.1:28215034-28215053 | None:intergenic | 35.0% | |
| TCCACAAGTTTATCAGTTTC+TGG | - | chr5.1:28215722-28215741 | None:intergenic | 35.0% | |
| TTATCTCCATGAATGAGAAC+TGG | - | chr5.1:28214947-28214966 | None:intergenic | 35.0% | |
| !! | AAACTTGTGGAGTTTGCTAA+GGG | + | chr5.1:28215731-28215750 | MS.gene49634:CDS | 35.0% |
| !! | GAAGGCATATTTTGAGCAAA+TGG | + | chr5.1:28215466-28215485 | MS.gene49634:CDS | 35.0% |
| !! | TAAACTTGTGGAGTTTGCTA+AGG | + | chr5.1:28215730-28215749 | MS.gene49634:CDS | 35.0% |
| !! | TAAGGGTTTTGTGCAAAGAA+TGG | + | chr5.1:28215748-28215767 | MS.gene49634:CDS | 35.0% |
| !!! | GAAGAAAAGGTCTTTTTTGG+AGG | + | chr5.1:28215533-28215552 | MS.gene49634:CDS | 35.0% |
| !!! | TGAAGAAGCAAGTCACTTTT+GGG | - | chr5.1:28214899-28214918 | None:intergenic | 35.0% |
| CACACACTGTTTAGGTCATT+TGG | - | chr5.1:28215208-28215227 | None:intergenic | 40.0% | |
| GCTCGATCATAAGCATTTGA+AGG | - | chr5.1:28215046-28215065 | None:intergenic | 40.0% | |
| GGAAGAAGTTCTTGAGAAGT+TGG | + | chr5.1:28215487-28215506 | MS.gene49634:CDS | 40.0% | |
| TGAAACAAAGACTCCAGCTT+TGG | + | chr5.1:28215646-28215665 | MS.gene49634:CDS | 40.0% | |
| TGCCCTTAACATCAAAGGAT+TGG | + | chr5.1:28214844-28214863 | MS.gene49634:CDS | 40.0% | |
| TGGTATAATTCCTCGCGAAA+TGG | + | chr5.1:28215416-28215435 | MS.gene49634:CDS | 40.0% | |
| ! | ATCGAGCCATTGCGAAATTT+TGG | + | chr5.1:28215059-28215078 | MS.gene49634:CDS | 40.0% |
| ! | TCGAGCCATTGCGAAATTTT+GGG | + | chr5.1:28215060-28215079 | MS.gene49634:CDS | 40.0% |
| !! | CTGAAGAAGCAAGTCACTTT+TGG | - | chr5.1:28214900-28214919 | None:intergenic | 40.0% |
| !! | CTTTTGGGTCCTATTTGAGT+TGG | + | chr5.1:28215582-28215601 | MS.gene49634:CDS | 40.0% |
| !! | GTCCTATTTGAGTTGGTTGA+GGG | + | chr5.1:28215589-28215608 | MS.gene49634:CDS | 40.0% |
| !!! | CAAGTCACTTTTGGGATTCA+TGG | - | chr5.1:28214891-28214910 | None:intergenic | 40.0% |
| AGGGTCACTGAGAAAATGAC+AGG | + | chr5.1:28215608-28215627 | MS.gene49634:CDS | 45.0% | |
| GACCCTCAACCAACTCAAAT+AGG | - | chr5.1:28215594-28215613 | None:intergenic | 45.0% | |
| GGCAACCCAAAATTTCGCAA+TGG | - | chr5.1:28215068-28215087 | None:intergenic | 45.0% | |
| GGTAGAATTCCTTTCACAGC+AGG | - | chr5.1:28215701-28215720 | None:intergenic | 45.0% | |
| GGTTTCAATTGGGAGAGTAG+TGG | + | chr5.1:28215396-28215415 | MS.gene49634:intron | 45.0% | |
| ! | AGACTCCAGCTTTGGTGAAA+TGG | + | chr5.1:28215654-28215673 | MS.gene49634:CDS | 45.0% |
| ! | GACTCCAGCTTTGGTGAAAT+GGG | + | chr5.1:28215655-28215674 | MS.gene49634:CDS | 45.0% |
| !! | GGTCCTATTTGAGTTGGTTG+AGG | + | chr5.1:28215588-28215607 | MS.gene49634:CDS | 45.0% |
| CACACGCACACACACTGTTT+AGG | - | chr5.1:28215216-28215235 | None:intergenic | 50.0% | |
| GGCAATCAAACCATTTCGCG+AGG | - | chr5.1:28215429-28215448 | None:intergenic | 50.0% | |
| TCAGCCCATTTCACCAAAGC+TGG | - | chr5.1:28215662-28215681 | None:intergenic | 50.0% | |
| GCTGCTCATCCTGCTGTGAA+AGG | + | chr5.1:28215689-28215708 | MS.gene49634:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 28214779 | 28215790 | 28214779 | ID=MS.gene49634 |
| chr5.1 | mRNA | 28214779 | 28215790 | 28214779 | ID=MS.gene49634.t1;Parent=MS.gene49634 |
| chr5.1 | exon | 28214779 | 28215081 | 28214779 | ID=MS.gene49634.t1.exon1;Parent=MS.gene49634.t1 |
| chr5.1 | CDS | 28214779 | 28215081 | 28214779 | ID=cds.MS.gene49634.t1;Parent=MS.gene49634.t1 |
| chr5.1 | exon | 28215416 | 28215790 | 28215416 | ID=MS.gene49634.t1.exon2;Parent=MS.gene49634.t1 |
| chr5.1 | CDS | 28215416 | 28215790 | 28215416 | ID=cds.MS.gene49634.t1;Parent=MS.gene49634.t1 |
| Gene Sequence |
| Protein sequence |
