Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49642.t1 | XP_013455540.1 | 43.4 | 371 | 34 | 8 | 1 | 226 | 1789 | 2128 | 5.20E-54 | 221.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49642.t1 | O23372 | 32.2 | 369 | 73 | 11 | 4 | 226 | 1467 | 1804 | 7.6e-30 | 132.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49642.t1 | A0A072UJF9 | 43.4 | 371 | 34 | 8 | 1 | 226 | 1789 | 2128 | 3.7e-54 | 221.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene49642 | 0.805893 | 1.07E-49 | -1.69E-46 |
| MS.gene049977 | MS.gene49642 | 0.817416 | 3.34E-52 | -1.69E-46 |
| MS.gene051201 | MS.gene49642 | 0.814607 | 1.41E-51 | -1.69E-46 |
| MS.gene051613 | MS.gene49642 | 0.813179 | 2.92E-51 | -1.69E-46 |
| MS.gene052447 | MS.gene49642 | 0.882806 | 7.65E-71 | -1.69E-46 |
| MS.gene053082 | MS.gene49642 | 0.821706 | 3.50E-53 | -1.69E-46 |
| MS.gene05329 | MS.gene49642 | 0.838748 | 2.39E-57 | -1.69E-46 |
| MS.gene053396 | MS.gene49642 | 0.812643 | 3.82E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene49642 | 0.817382 | 3.39E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene49642 | 0.818403 | 2.00E-52 | -1.69E-46 |
| MS.gene05531 | MS.gene49642 | 0.819718 | 1.00E-52 | -1.69E-46 |
| MS.gene055952 | MS.gene49642 | 0.870035 | 1.98E-66 | -1.69E-46 |
| MS.gene056082 | MS.gene49642 | 0.800863 | 1.18E-48 | -1.69E-46 |
| MS.gene056272 | MS.gene49642 | 0.842089 | 3.20E-58 | -1.69E-46 |
| MS.gene05669 | MS.gene49642 | 0.815853 | 7.47E-52 | -1.69E-46 |
| MS.gene059458 | MS.gene49642 | 0.814498 | 1.49E-51 | -1.69E-46 |
| MS.gene059460 | MS.gene49642 | 0.815319 | 9.82E-52 | -1.69E-46 |
| MS.gene060134 | MS.gene49642 | 0.826553 | 2.55E-54 | -1.69E-46 |
| MS.gene060135 | MS.gene49642 | 0.807987 | 3.86E-50 | -1.69E-46 |
| MS.gene060634 | MS.gene49642 | -0.813493 | 2.49E-51 | -1.69E-46 |
| MS.gene060654 | MS.gene49642 | 0.853489 | 2.31E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49642.t1 | MTR_5g037343 | 55.135 | 185 | 41 | 5 | 52 | 226 | 262 | 414 | 3.32e-49 | 172 |
| MS.gene49642.t1 | MTR_4g045743 | 58.101 | 179 | 22 | 4 | 1 | 126 | 1789 | 1967 | 2.72e-48 | 172 |
| MS.gene49642.t1 | MTR_4g045743 | 85.714 | 56 | 8 | 0 | 235 | 290 | 1853 | 1908 | 8.78e-21 | 92.8 |
| MS.gene49642.t1 | MTR_2g089080 | 46.857 | 175 | 41 | 3 | 4 | 126 | 1634 | 1808 | 2.12e-32 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49642.t1 | AT4G15180 | 38.418 | 177 | 55 | 5 | 4 | 126 | 1467 | 1643 | 3.55e-21 | 94.4 |
Find 67 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGTTCAATAAACAGTTAT+AGG | 0.278796 | 5.1:+28089574 | None:intergenic |
| ATACTTGGTGGTTTGGATAA+TGG | 0.282300 | 5.1:-28090404 | MS.gene49642:CDS |
| CACTCTCTAAATGAACTTCT+TGG | 0.306863 | 5.1:+28088403 | None:intergenic |
| CCTATAACTGTTTATTGAAC+TGG | 0.334814 | 5.1:-28089574 | MS.gene49642:CDS |
| GAGATTCACTATTGAAGTTA+TGG | 0.354125 | 5.1:-28090496 | MS.gene49642:CDS |
| ACATAATATTTCCGAGTAAC+AGG | 0.358848 | 5.1:+28090095 | None:intergenic |
| TAATCTATTCTTCTTGTACT+TGG | 0.367487 | 5.1:+28090457 | None:intergenic |
| CATTAGTGATGAACGTGAAT+GGG | 0.384963 | 5.1:-28090150 | MS.gene49642:CDS |
| CTTTCATGCTTAAAATTCAA+TGG | 0.389218 | 5.1:-28089604 | MS.gene49642:CDS |
| AGATTCACTATTGAAGTTAT+GGG | 0.394945 | 5.1:-28090495 | MS.gene49642:CDS |
| ATGAAATCCAACCCATCATT+AGG | 0.403745 | 5.1:+28090170 | None:intergenic |
| AACTGGATCATGCATGGACT+TGG | 0.409927 | 5.1:-28089557 | MS.gene49642:CDS |
| TGATGAAATACTTGGTGGTT+TGG | 0.410440 | 5.1:-28090411 | MS.gene49642:CDS |
| ACCAGGGAATCAAAAGGAAA+TGG | 0.421921 | 5.1:-28088378 | MS.gene49642:CDS |
| ACCAGGGAATCAAAAGGAAA+TGG | 0.421921 | 5.1:-28090207 | MS.gene49642:CDS |
| CTATGCCAGCCGAGTTAGAT+TGG | 0.426626 | 5.1:-28089859 | MS.gene49642:intron |
| AACTTCTCTGTATAGTCATC+TGG | 0.429971 | 5.1:+28090008 | None:intergenic |
| TTGCATGACGAAAGCAAGTC+TGG | 0.432203 | 5.1:-28090123 | MS.gene49642:CDS |
| TCATTAGTGATGAACGTGAA+TGG | 0.456776 | 5.1:-28090151 | MS.gene49642:CDS |
| TCTATTCTTCTTGTACTTGG+AGG | 0.471441 | 5.1:+28090460 | None:intergenic |
| TAATGTTTACATTCATAAAG+AGG | 0.471806 | 5.1:+28089629 | None:intergenic |
| CTATTCTTCTTGTACTTGGA+GGG | 0.474425 | 5.1:+28090461 | None:intergenic |
| TTCTTGGTAACTATCAGTAT+TGG | 0.476909 | 5.1:+28088419 | None:intergenic |
| CTTGATGTGTCTTCTGAAGT+TGG | 0.480189 | 5.1:-28088468 | MS.gene49642:CDS |
| GGGGTTGTTTGCAACAAAGA+AGG | 0.480208 | 5.1:-28089536 | MS.gene49642:CDS |
| TAGTGACTGAGAGAAAGTAT+AGG | 0.481309 | 5.1:-28090436 | MS.gene49642:CDS |
| TAAGCCACATATTTGTCATC+AGG | 0.486820 | 5.1:+28089665 | None:intergenic |
| ACCGCATACCTACCTAATGA+TGG | 0.497160 | 5.1:-28090182 | MS.gene49642:CDS |
| GTCTGGTTTCTCCTGTTACT+CGG | 0.506254 | 5.1:-28090106 | MS.gene49642:CDS |
| CAAGAAGTTCATTTAGAGAG+TGG | 0.510874 | 5.1:-28088402 | MS.gene49642:CDS |
| TTGGTAACTATCAGTATTGG+AGG | 0.515959 | 5.1:+28088422 | None:intergenic |
| GTCATCAGGACGTTTGTCCA+TGG | 0.520688 | 5.1:+28089679 | None:intergenic |
| TGTTGTTGAGTTTCTTGGAG+AGG | 0.524048 | 5.1:-28089492 | MS.gene49642:intron |
| ACTGGATCATGCATGGACTT+GGG | 0.531720 | 5.1:-28089556 | MS.gene49642:CDS |
| TTCATTTAGAGAGTGGAACC+AGG | 0.540627 | 5.1:-28088395 | MS.gene49642:CDS |
| TTCATTTAGAGAGTGGAACC+AGG | 0.540627 | 5.1:-28090224 | MS.gene49642:intron |
| AGACACAGTCCTTCGGACAT+TGG | 0.543084 | 5.1:-28089823 | MS.gene49642:CDS |
| CAAGAGAAGACACAGTCCTT+CGG | 0.546133 | 5.1:-28089830 | MS.gene49642:CDS |
| AGTGGAACCAGGGAATCAAA+AGG | 0.562444 | 5.1:-28088384 | MS.gene49642:CDS |
| AGTGGAACCAGGGAATCAAA+AGG | 0.562444 | 5.1:-28090213 | MS.gene49642:CDS |
| CTGGATCATGCATGGACTTG+GGG | 0.565811 | 5.1:-28089555 | MS.gene49642:CDS |
| CAAATATGTGGCTTATCGAA+AGG | 0.567901 | 5.1:-28089657 | MS.gene49642:CDS |
| TATAGGAGTGATGAAATACT+TGG | 0.572120 | 5.1:-28090419 | MS.gene49642:CDS |
| CCGCATACCTACCTAATGAT+GGG | 0.580393 | 5.1:-28090181 | MS.gene49642:CDS |
| TCAAGGTATCCTAAAAGCCA+TGG | 0.580957 | 5.1:-28089696 | MS.gene49642:CDS |
| TTATTGAACTGGATCATGCA+TGG | 0.584001 | 5.1:-28089563 | MS.gene49642:CDS |
| CAACTTCAGAAGACACATCA+AGG | 0.588693 | 5.1:+28088469 | None:intergenic |
| TGATGTGCCAAGGAAAATGC+GGG | 0.590669 | 5.1:-28090039 | MS.gene49642:CDS |
| GATTCACTATTGAAGTTATG+GGG | 0.596598 | 5.1:-28090494 | MS.gene49642:CDS |
| ATACCTACCTAATGATGGGT+TGG | 0.605398 | 5.1:-28090177 | MS.gene49642:CDS |
| ACGTCCTGATGACAAATATG+TGG | 0.606005 | 5.1:-28089669 | MS.gene49642:CDS |
| AGGAGTGATGAAATACTTGG+TGG | 0.607545 | 5.1:-28090416 | MS.gene49642:CDS |
| GTTGTTTGCAACAAAGAAGG+CGG | 0.611650 | 5.1:-28089533 | MS.gene49642:CDS |
| ATTAGTGATGAACGTGAATG+GGG | 0.618401 | 5.1:-28090149 | MS.gene49642:CDS |
| ATATGTGATTGTAGCTGTTG+AGG | 0.619533 | 5.1:-28090063 | MS.gene49642:CDS |
| AATCCAACCCATCATTAGGT+AGG | 0.621789 | 5.1:+28088345 | None:intergenic |
| AATCCAACCCATCATTAGGT+AGG | 0.621789 | 5.1:+28090174 | None:intergenic |
| TTGTAGAGACCAATCTAACT+CGG | 0.633168 | 5.1:+28089850 | None:intergenic |
| ATGATGTGCCAAGGAAAATG+CGG | 0.635221 | 5.1:-28090040 | MS.gene49642:CDS |
| CTTCTGATAGAGAAATCAGA+AGG | 0.641496 | 5.1:-28088544 | MS.gene49642:intron |
| CTTCTGATAGAGAAATCAGA+AGG | 0.641496 | 5.1:-28090373 | MS.gene49642:intron |
| CAGAGGATCAGTATGTGTCA+AGG | 0.642658 | 5.1:-28089713 | MS.gene49642:CDS |
| CTTGCATATCCAATGTCCGA+AGG | 0.648276 | 5.1:+28089814 | None:intergenic |
| TCATTTAGAGAGTGGAACCA+GGG | 0.650281 | 5.1:-28088394 | MS.gene49642:CDS |
| TCATTTAGAGAGTGGAACCA+GGG | 0.650281 | 5.1:-28090223 | MS.gene49642:intron |
| CCCATCATTAGGTAGGTATG+CGG | 0.686737 | 5.1:+28090181 | None:intergenic |
| CTGTTGAGGATGATGTGCCA+AGG | 0.702470 | 5.1:-28090049 | MS.gene49642:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTATTTTTTTTTTTAG+AGG | + | chr5.1:28089749-28089768 | None:intergenic | 10.0% |
| !! | AATATCTATAATGTCTTTAA+TGG | - | chr5.1:28089479-28089498 | MS.gene49642:intron | 15.0% |
| !! | TTATAGATATTGACATTATA+CGG | + | chr5.1:28089470-28089489 | None:intergenic | 15.0% |
| !! | AACTAATCATTTAATACTTC+AGG | + | chr5.1:28089632-28089651 | None:intergenic | 20.0% |
| !! | TAATGTTTACATTCATAAAG+AGG | + | chr5.1:28089239-28089258 | None:intergenic | 20.0% |
| !! | TATAGATATTGACATTATAC+GGG | + | chr5.1:28089469-28089488 | None:intergenic | 20.0% |
| !! | TGAATGTGCATATAAAAATA+CGG | + | chr5.1:28090104-28090123 | None:intergenic | 20.0% |
| !!! | GATTTTCAAGATTTTTTTCT+AGG | + | chr5.1:28088926-28088945 | None:intergenic | 20.0% |
| !!! | GTAAAATTGAGTTTGAAATA+TGG | - | chr5.1:28089667-28089686 | MS.gene49642:CDS | 20.0% |
| !!! | TATTTCAAACTCAATTTTAC+AGG | + | chr5.1:28089667-28089686 | None:intergenic | 20.0% |
| ! | AAGTAAAAGATTGTGTATAG+AGG | + | chr5.1:28088982-28089001 | None:intergenic | 25.0% |
| ! | AATGTGCATATAAAAATACG+GGG | + | chr5.1:28090102-28090121 | None:intergenic | 25.0% |
| ! | ACAAGATTACAAAAGATGAT+AGG | - | chr5.1:28089766-28089785 | MS.gene49642:intron | 25.0% |
| ! | AGATTCACTATTGAAGTTAT+GGG | - | chr5.1:28088370-28088389 | MS.gene49642:CDS | 25.0% |
| ! | AGTAAAAGATTGTGTATAGA+GGG | + | chr5.1:28088981-28089000 | None:intergenic | 25.0% |
| ! | ATCTCATTATTTATTCAGCT+TGG | - | chr5.1:28090142-28090161 | MS.gene49642:CDS | 25.0% |
| ! | ATGGTTGAGATTAGAAAATA+TGG | - | chr5.1:28089498-28089517 | MS.gene49642:CDS | 25.0% |
| ! | CTTTCATGCTTAAAATTCAA+TGG | - | chr5.1:28089261-28089280 | MS.gene49642:intron | 25.0% |
| ! | GAATGTGCATATAAAAATAC+GGG | + | chr5.1:28090103-28090122 | None:intergenic | 25.0% |
| ! | TAATCTATTCTTCTTGTACT+TGG | + | chr5.1:28088411-28088430 | None:intergenic | 25.0% |
| ! | TAGAATACCACATATTTCTT+GGG | - | chr5.1:28090055-28090074 | MS.gene49642:CDS | 25.0% |
| ! | TATAGGAATGATGAAATACT+TGG | - | chr5.1:28090275-28090294 | MS.gene49642:intron | 25.0% |
| !! | TAGGAGAGTATAAATAAACA+GGG | + | chr5.1:28089947-28089966 | None:intergenic | 25.0% |
| !! | TATTCTAGAAGATGAAAAAG+AGG | + | chr5.1:28090042-28090061 | None:intergenic | 25.0% |
| !! | TTAGGAGAGTATAAATAAAC+AGG | + | chr5.1:28089948-28089967 | None:intergenic | 25.0% |
| AAATCAGTTCATTGAGCAAA+AGG | - | chr5.1:28088941-28088960 | MS.gene49642:intron | 30.0% | |
| ACATAATATTTCCGAGTAAC+AGG | + | chr5.1:28088773-28088792 | None:intergenic | 30.0% | |
| AGAATAGATTTACTCTTCCA+AGG | - | chr5.1:28089856-28089875 | MS.gene49642:intron | 30.0% | |
| AGATGCACTATTGAAGTTAT+GGG | - | chr5.1:28090199-28090218 | MS.gene49642:CDS | 30.0% | |
| ATCTATTCTGAGTATCATAG+TGG | + | chr5.1:28089845-28089864 | None:intergenic | 30.0% | |
| ATGTGCATATAAAAATACGG+GGG | + | chr5.1:28090101-28090120 | None:intergenic | 30.0% | |
| CCAGTTCAATAAACAGTTAT+AGG | + | chr5.1:28089294-28089313 | None:intergenic | 30.0% | |
| CCTATAACTGTTTATTGAAC+TGG | - | chr5.1:28089291-28089310 | MS.gene49642:intron | 30.0% | |
| CTAGAATACCACATATTTCT+TGG | - | chr5.1:28090054-28090073 | MS.gene49642:CDS | 30.0% | |
| GAATAGATTTACTCTTCCAA+GGG | - | chr5.1:28089857-28089876 | MS.gene49642:intron | 30.0% | |
| GAGATTCACTATTGAAGTTA+TGG | - | chr5.1:28088369-28088388 | MS.gene49642:CDS | 30.0% | |
| GATTCACTATTGAAGTTATG+GGG | - | chr5.1:28088371-28088390 | MS.gene49642:CDS | 30.0% | |
| TATAGGAGTGATGAAATACT+TGG | - | chr5.1:28088446-28088465 | MS.gene49642:CDS | 30.0% | |
| TATTGTATCAGAACTGCTAT+AGG | + | chr5.1:28089900-28089919 | None:intergenic | 30.0% | |
| TATTTATTCAGCTTGGAACA+CGG | - | chr5.1:28090149-28090168 | MS.gene49642:CDS | 30.0% | |
| TGAATAGAACTGCATAAATG+AGG | + | chr5.1:28089441-28089460 | None:intergenic | 30.0% | |
| TTCATTGAGCAAAAGGTTTA+TGG | - | chr5.1:28088948-28088967 | MS.gene49642:intron | 30.0% | |
| ! | AGGAGAGTATAAATAAACAG+GGG | + | chr5.1:28089946-28089965 | None:intergenic | 30.0% |
| ! | TTCTTGGTAACTATCAGTAT+TGG | + | chr5.1:28088620-28088639 | None:intergenic | 30.0% |
| !!! | GATTTTGTTGTTGAGTTTCT+TGG | - | chr5.1:28089368-28089387 | MS.gene49642:intron | 30.0% |
| AACTTCTCTGTATAGTCATC+TGG | + | chr5.1:28088860-28088879 | None:intergenic | 35.0% | |
| AATAAACAGGGGGAATAGAA+AGG | + | chr5.1:28089935-28089954 | None:intergenic | 35.0% | |
| AGAACTGCTATAGGTTGTAA+GGG | + | chr5.1:28089891-28089910 | None:intergenic | 35.0% | |
| AGAGATTCTGTATAAGAGTG+AGG | + | chr5.1:28090007-28090026 | None:intergenic | 35.0% | |
| AGGAATGATGAAATACTTGG+TGG | - | chr5.1:28090278-28090297 | MS.gene49642:intron | 35.0% | |
| ATATGTGATTGTAGCTGTTG+AGG | - | chr5.1:28088802-28088821 | MS.gene49642:intron | 35.0% | |
| ATGAAATCCAACCCATCATT+AGG | + | chr5.1:28088698-28088717 | None:intergenic | 35.0% | |
| ATTAGTGATGAACGTGAATG+GGG | - | chr5.1:28088716-28088735 | MS.gene49642:intron | 35.0% | |
| CAAATATGTGGCTTATCGAA+AGG | - | chr5.1:28089208-28089227 | MS.gene49642:intron | 35.0% | |
| CAAGAAGTTCATTTAGAGAG+TGG | - | chr5.1:28088634-28088653 | MS.gene49642:intron | 35.0% | |
| CACTCTCTAAATGAACTTCT+TGG | + | chr5.1:28088636-28088655 | None:intergenic | 35.0% | |
| CAGATGCACTATTGAAGTTA+TGG | - | chr5.1:28090198-28090217 | MS.gene49642:CDS | 35.0% | |
| CATTAGTGATGAACGTGAAT+GGG | - | chr5.1:28088715-28088734 | MS.gene49642:intron | 35.0% | |
| CTATTCTTCTTGTACTTGGA+GGG | + | chr5.1:28088407-28088426 | None:intergenic | 35.0% | |
| CTGTTATCCTAGAGATTGAA+AGG | - | chr5.1:28089125-28089144 | MS.gene49642:intron | 35.0% | |
| CTTCTGATAGAGAAATCAGA+AGG | - | chr5.1:28088492-28088511 | MS.gene49642:CDS | 35.0% | |
| GAAATATGGTTATCCTCTGT+GGG | - | chr5.1:28089681-28089700 | MS.gene49642:CDS | 35.0% | |
| GATGCACTATTGAAGTTATG+GGG | - | chr5.1:28090200-28090219 | MS.gene49642:CDS | 35.0% | |
| GTTCTGATACAATATTCCAG+TGG | - | chr5.1:28089906-28089925 | MS.gene49642:intron | 35.0% | |
| TAAGCCACATATTTGTCATC+AGG | + | chr5.1:28089203-28089222 | None:intergenic | 35.0% | |
| TAGGTTCTTGAAAGAGAGTA+TGG | - | chr5.1:28089785-28089804 | MS.gene49642:intron | 35.0% | |
| TCATTAGTGATGAACGTGAA+TGG | - | chr5.1:28088714-28088733 | MS.gene49642:intron | 35.0% | |
| TCTATTCTTCTTGTACTTGG+AGG | + | chr5.1:28088408-28088427 | None:intergenic | 35.0% | |
| TGAAATATGGTTATCCTCTG+TGG | - | chr5.1:28089680-28089699 | MS.gene49642:CDS | 35.0% | |
| TGTGCATATAAAAATACGGG+GGG | + | chr5.1:28090100-28090119 | None:intergenic | 35.0% | |
| TTATTGAACTGGATCATGCA+TGG | - | chr5.1:28089302-28089321 | MS.gene49642:intron | 35.0% | |
| TTGTAGAGACCAATCTAACT+CGG | + | chr5.1:28089018-28089037 | None:intergenic | 35.0% | |
| ! | AAGATGAAAAAGAGGCGTAA+AGG | + | chr5.1:28090034-28090053 | None:intergenic | 35.0% |
| ! | ATACTTGGTGGTTTGGATAA+TGG | - | chr5.1:28088461-28088480 | MS.gene49642:CDS | 35.0% |
| ! | ATGCAAGTTAGGCATTTTAG+TGG | - | chr5.1:28089067-28089086 | MS.gene49642:intron | 35.0% |
| ! | GATGATGATGATGATGATGA+TGG | + | chr5.1:28089536-28089555 | None:intergenic | 35.0% |
| ! | GGAGAGTATAAATAAACAGG+GGG | + | chr5.1:28089945-28089964 | None:intergenic | 35.0% |
| ! | TACACTGGTTAAACAGTTGT+AGG | + | chr5.1:28089978-28089997 | None:intergenic | 35.0% |
| ! | TAGTGACTGAGAGAAAGTAT+AGG | - | chr5.1:28088429-28088448 | MS.gene49642:CDS | 35.0% |
| ! | TGATGAAATACTTGGTGGTT+TGG | - | chr5.1:28088454-28088473 | MS.gene49642:CDS | 35.0% |
| ! | TTGGTAACTATCAGTATTGG+AGG | + | chr5.1:28088617-28088636 | None:intergenic | 35.0% |
| !! | CTTTCAATCTCTAGGATAAC+AGG | + | chr5.1:28089127-28089146 | None:intergenic | 35.0% |
| AATCCAACCCATCATTAGGT+AGG | + | chr5.1:28088694-28088713 | None:intergenic | 40.0% | |
| ACAGTTGTAGGAGGGTAATT+AGG | + | chr5.1:28089966-28089985 | None:intergenic | 40.0% | |
| ACCAGGGAATCAAAAGGAAA+TGG | - | chr5.1:28088658-28088677 | MS.gene49642:intron | 40.0% | |
| ACGTCCTGATGACAAATATG+TGG | - | chr5.1:28089196-28089215 | MS.gene49642:intron | 40.0% | |
| ACTGGTTAAACAGTTGTAGG+AGG | + | chr5.1:28089975-28089994 | None:intergenic | 40.0% | |
| AGAGTGAGGAATTGATACAC+TGG | + | chr5.1:28089993-28090012 | None:intergenic | 40.0% | |
| AGGAGTGATGAAATACTTGG+TGG | - | chr5.1:28088449-28088468 | MS.gene49642:CDS | 40.0% | |
| ATACTCATCAGTGCCATATC+AGG | + | chr5.1:28088888-28088907 | None:intergenic | 40.0% | |
| ATGATGTGCCAAGGAAAATG+CGG | - | chr5.1:28088825-28088844 | MS.gene49642:intron | 40.0% | |
| CAACTTCAGAAGACACATCA+AGG | + | chr5.1:28088570-28088589 | None:intergenic | 40.0% | |
| CAGAACTGCTATAGGTTGTA+AGG | + | chr5.1:28089892-28089911 | None:intergenic | 40.0% | |
| CTGGTTAAACAGTTGTAGGA+GGG | + | chr5.1:28089974-28089993 | None:intergenic | 40.0% | |
| GGACATTGGATATGCAAGTT+AGG | - | chr5.1:28089056-28089075 | MS.gene49642:intron | 40.0% | |
| GTTGTTTGCAACAAAGAAGG+CGG | - | chr5.1:28089332-28089351 | MS.gene49642:intron | 40.0% | |
| TCATTTAGAGAGTGGAACCA+GGG | - | chr5.1:28088642-28088661 | MS.gene49642:intron | 40.0% | |
| TCGATCACCCAAGAAATATG+TGG | + | chr5.1:28090065-28090084 | None:intergenic | 40.0% | |
| TGTTGTTGAGTTTCTTGGAG+AGG | - | chr5.1:28089373-28089392 | MS.gene49642:intron | 40.0% | |
| TTCATTTAGAGAGTGGAACC+AGG | - | chr5.1:28088641-28088660 | MS.gene49642:intron | 40.0% | |
| TTGAGTTTCTTGGAGAGGTA+TGG | - | chr5.1:28089378-28089397 | MS.gene49642:intron | 40.0% | |
| ! | AATGAAACCCGCATTTTCCT+TGG | + | chr5.1:28088836-28088855 | None:intergenic | 40.0% |
| ! | TCAAGGTATCCTAAAAGCCA+TGG | - | chr5.1:28089169-28089188 | MS.gene49642:intron | 40.0% |
| ! | TGTAAGGGAAACTTTTCCCT+TGG | + | chr5.1:28089876-28089895 | None:intergenic | 40.0% |
| !! | ATACCTACCTAATGATGGGT+TGG | - | chr5.1:28088688-28088707 | MS.gene49642:intron | 40.0% |
| !! | CTTGATGTGTCTTCTGAAGT+TGG | - | chr5.1:28088568-28088587 | MS.gene49642:intron | 40.0% |
| !! | GTTAGGCATTTTAGTGGAAC+TGG | - | chr5.1:28089073-28089092 | MS.gene49642:intron | 40.0% |
| !! | TCCATTTCCTTTTGATTCCC+TGG | + | chr5.1:28088662-28088681 | None:intergenic | 40.0% |
| !! | TGGCACTGATGAGTATGATA+TGG | - | chr5.1:28088892-28088911 | MS.gene49642:intron | 40.0% |
| AAACAGGGGGAATAGAAAGG+AGG | + | chr5.1:28089932-28089951 | None:intergenic | 45.0% | |
| AACTGGATCATGCATGGACT+TGG | - | chr5.1:28089308-28089327 | MS.gene49642:intron | 45.0% | |
| ACCGCATACCTACCTAATGA+TGG | - | chr5.1:28088683-28088702 | MS.gene49642:intron | 45.0% | |
| ACTGGATCATGCATGGACTT+GGG | - | chr5.1:28089309-28089328 | MS.gene49642:intron | 45.0% | |
| AGTGGAACCAGGGAATCAAA+AGG | - | chr5.1:28088652-28088671 | MS.gene49642:intron | 45.0% | |
| CAAGAGAAGACACAGTCCTT+CGG | - | chr5.1:28089035-28089054 | MS.gene49642:intron | 45.0% | |
| CAGAGGATCAGTATGTGTCA+AGG | - | chr5.1:28089152-28089171 | MS.gene49642:intron | 45.0% | |
| CCCATCATTAGGTAGGTATG+CGG | + | chr5.1:28088687-28088706 | None:intergenic | 45.0% | |
| CCGCATACCTACCTAATGAT+GGG | - | chr5.1:28088684-28088703 | MS.gene49642:intron | 45.0% | |
| CTGCACACCTTTCAATCTCT+AGG | + | chr5.1:28089135-28089154 | None:intergenic | 45.0% | |
| CTTGCATATCCAATGTCCGA+AGG | + | chr5.1:28089054-28089073 | None:intergenic | 45.0% | |
| GAGAAGTTGACTGCCTGATA+TGG | - | chr5.1:28088872-28088891 | MS.gene49642:intron | 45.0% | |
| GGCTGCAAAGAGTAACTCAT+TGG | + | chr5.1:28089106-28089125 | None:intergenic | 45.0% | |
| GGGGTTGTTTGCAACAAAGA+AGG | - | chr5.1:28089329-28089348 | MS.gene49642:intron | 45.0% | |
| TATTCAGCTTGGAACACGGT+TGG | - | chr5.1:28090153-28090172 | MS.gene49642:CDS | 45.0% | |
| TGATGTGCCAAGGAAAATGC+GGG | - | chr5.1:28088826-28088845 | MS.gene49642:intron | 45.0% | |
| TTGCATGACGAAAGCAAGTC+TGG | - | chr5.1:28088742-28088761 | MS.gene49642:intron | 45.0% | |
| ! | AGAGATTGAAAGGTGTGCAG+AGG | - | chr5.1:28089135-28089154 | MS.gene49642:intron | 45.0% |
| ! | GACGTTTGTCCATGGCTTTT+AGG | + | chr5.1:28089181-28089200 | None:intergenic | 45.0% |
| ! | GTCTGGTTTCTCCTGTTACT+CGG | - | chr5.1:28088759-28088778 | MS.gene49642:intron | 45.0% |
| AGACACAGTCCTTCGGACAT+TGG | - | chr5.1:28089042-28089061 | MS.gene49642:intron | 50.0% | |
| AGAGACCAATCTAACTCGGC+TGG | + | chr5.1:28089014-28089033 | None:intergenic | 50.0% | |
| CTATGCCAGCCGAGTTAGAT+TGG | - | chr5.1:28089006-28089025 | MS.gene49642:intron | 50.0% | |
| CTGGATCATGCATGGACTTG+GGG | - | chr5.1:28089310-28089329 | MS.gene49642:intron | 50.0% | |
| CTGTTGAGGATGATGTGCCA+AGG | - | chr5.1:28088816-28088835 | MS.gene49642:intron | 50.0% | |
| GTCATCAGGACGTTTGTCCA+TGG | + | chr5.1:28089189-28089208 | None:intergenic | 50.0% | |
| GTGTGTGTGTCTGTGTCTGT+AGG | + | chr5.1:28089419-28089438 | None:intergenic | 50.0% | |
| TACAAGACATGTGCCCACAG+AGG | + | chr5.1:28089697-28089716 | None:intergenic | 50.0% | |
| GGGAATAGAAAGGAGGCCAC+TGG | + | chr5.1:28089925-28089944 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 28088359 | 28090528 | 28088359 | ID=MS.gene49642 |
| chr5.1 | mRNA | 28088359 | 28090528 | 28088359 | ID=MS.gene49642.t1;Parent=MS.gene49642 |
| chr5.1 | exon | 28090374 | 28090528 | 28090374 | ID=MS.gene49642.t1.exon1;Parent=MS.gene49642.t1 |
| chr5.1 | CDS | 28090374 | 28090528 | 28090374 | ID=cds.MS.gene49642.t1;Parent=MS.gene49642.t1 |
| chr5.1 | exon | 28090011 | 28090235 | 28090011 | ID=MS.gene49642.t1.exon2;Parent=MS.gene49642.t1 |
| chr5.1 | CDS | 28090011 | 28090235 | 28090011 | ID=cds.MS.gene49642.t1;Parent=MS.gene49642.t1 |
| chr5.1 | exon | 28089815 | 28089872 | 28089815 | ID=MS.gene49642.t1.exon3;Parent=MS.gene49642.t1 |
| chr5.1 | CDS | 28089815 | 28089872 | 28089815 | ID=cds.MS.gene49642.t1;Parent=MS.gene49642.t1 |
| chr5.1 | exon | 28089493 | 28089732 | 28089493 | ID=MS.gene49642.t1.exon4;Parent=MS.gene49642.t1 |
| chr5.1 | CDS | 28089493 | 28089732 | 28089493 | ID=cds.MS.gene49642.t1;Parent=MS.gene49642.t1 |
| chr5.1 | exon | 28088359 | 28088556 | 28088359 | ID=MS.gene49642.t1.exon5;Parent=MS.gene49642.t1 |
| chr5.1 | CDS | 28088359 | 28088556 | 28088359 | ID=cds.MS.gene49642.t1;Parent=MS.gene49642.t1 |
| Gene Sequence |
| Protein sequence |
