Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49868.t1 | XP_003597029.1 | 98.5 | 274 | 4 | 0 | 1 | 274 | 1 | 274 | 1.30E-131 | 479.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49868.t1 | Q9LSX7 | 69.5 | 272 | 72 | 3 | 14 | 274 | 11 | 282 | 1.3e-87 | 324.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49868.t1 | G7IKL0 | 98.5 | 274 | 4 | 0 | 1 | 274 | 1 | 274 | 9.4e-132 | 479.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049411 | MS.gene49868 | 0.84696 | 1.56E-59 | -1.69E-46 |
| MS.gene050085 | MS.gene49868 | 0.813199 | 2.89E-51 | -1.69E-46 |
| MS.gene050646 | MS.gene49868 | 0.813223 | 2.85E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene49868 | 0.802929 | 4.44E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene49868 | 0.802277 | 6.06E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene49868 | 0.825841 | 3.76E-54 | -1.69E-46 |
| MS.gene051043 | MS.gene49868 | 0.800054 | 1.73E-48 | -1.69E-46 |
| MS.gene051234 | MS.gene49868 | 0.8508 | 1.34E-60 | -1.69E-46 |
| MS.gene051343 | MS.gene49868 | 0.820026 | 8.52E-53 | -1.69E-46 |
| MS.gene052072 | MS.gene49868 | 0.820471 | 6.74E-53 | -1.69E-46 |
| MS.gene053143 | MS.gene49868 | 0.803755 | 3.00E-49 | -1.69E-46 |
| MS.gene054004 | MS.gene49868 | 0.93255 | 7.20E-95 | -1.69E-46 |
| MS.gene054005 | MS.gene49868 | 0.866598 | 2.54E-65 | -1.69E-46 |
| MS.gene055765 | MS.gene49868 | 0.813122 | 3.00E-51 | -1.69E-46 |
| MS.gene055886 | MS.gene49868 | 0.812822 | 3.49E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene49868 | 0.802666 | 5.04E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene49868 | 0.810998 | 8.72E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene49868 | 0.837227 | 5.89E-57 | -1.69E-46 |
| MS.gene059778 | MS.gene49868 | 0.819398 | 1.19E-52 | -1.69E-46 |
| MS.gene059802 | MS.gene49868 | 0.824138 | 9.49E-54 | -1.69E-46 |
| MS.gene060937 | MS.gene49868 | 0.810671 | 1.03E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene49868 | 0.847795 | 9.23E-60 | -1.69E-46 |
| MS.gene061160 | MS.gene49868 | 0.804023 | 2.64E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49868.t1 | MTR_2g088850 | 98.540 | 274 | 4 | 0 | 1 | 274 | 1 | 274 | 0.0 | 551 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49868.t1 | AT3G21865 | 66.667 | 276 | 73 | 3 | 14 | 274 | 11 | 282 | 2.83e-120 | 345 |
Find 0 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTTTAATCTACTTA+AGG | + | 15130:200612-200631 | MS.gene49868:intron | 10.0% |
| !! | AAGATAGACAATAAAAAAAT+GGG | - | 15130:201219-201238 | None:intergenic | 15.0% |
| !! | TAAGATAGACAATAAAAAAA+TGG | - | 15130:201220-201239 | None:intergenic | 15.0% |
| !!! | TATTTTTTGTGATATATGAT+TGG | + | 15130:199164-199183 | MS.gene49868:intron | 15.0% |
| !!! | TGAAATTTTGATATTTTTGA+TGG | + | 15130:199208-199227 | MS.gene49868:intron | 15.0% |
| !!! | TTTTGTTAGAAACTTTAAAT+GGG | + | 15130:199314-199333 | MS.gene49868:intron | 15.0% |
| !!! | TTTTTGTTAGAAACTTTAAA+TGG | + | 15130:199313-199332 | MS.gene49868:intron | 15.0% |
| !!! | TTTTTTTTGCTTTTAATGTT+GGG | + | 15130:199337-199356 | MS.gene49868:intron | 15.0% |
| !! | AAACTATAAGAGAAACTATT+AGG | + | 15130:199789-199808 | MS.gene49868:intron | 20.0% |
| !! | AAAGCTATAAAAAAATACAG+CGG | - | 15130:200356-200375 | None:intergenic | 20.0% |
| !! | AATAAGAATCTCATTACTTT+AGG | + | 15130:200869-200888 | MS.gene49868:intron | 20.0% |
| !! | AATCATTCAATCAACAATAA+AGG | - | 15130:199246-199265 | None:intergenic | 20.0% |
| !! | AATTTCATATTCTGAATCTT+AGG | - | 15130:201894-201913 | None:intergenic | 20.0% |
| !! | ACCTACTATGTATTTAAATA+AGG | + | 15130:199429-199448 | MS.gene49868:intron | 20.0% |
| !! | AGTTATTTATTTAAAAGCGA+AGG | + | 15130:200931-200950 | MS.gene49868:intron | 20.0% |
| !! | ATAAGAATCTCATTACTTTA+GGG | + | 15130:200870-200889 | MS.gene49868:intron | 20.0% |
| !! | ATATTCGTAACATTGAAAAA+TGG | - | 15130:201799-201818 | None:intergenic | 20.0% |
| !! | ATCATTCAATCAACAATAAA+GGG | - | 15130:199245-199264 | None:intergenic | 20.0% |
| !! | ATTAGAAAGAAACAATGATA+TGG | - | 15130:203639-203658 | None:intergenic | 20.0% |
| !! | ATTTCATATTCTGAATCTTA+GGG | - | 15130:201893-201912 | None:intergenic | 20.0% |
| !! | CAATAATTAGATAAGAGTAA+AGG | - | 15130:202838-202857 | None:intergenic | 20.0% |
| !! | CTATGTATTTAAATAAGGTA+TGG | + | 15130:199434-199453 | MS.gene49868:intron | 20.0% |
| !! | TAATCTATAAAGCTATAAAC+AGG | - | 15130:200664-200683 | None:intergenic | 20.0% |
| !! | TAGAATCTATATATTTGTGA+AGG | + | 15130:203052-203071 | MS.gene49868:intron | 20.0% |
| !! | TCACAAAAGTTGTTTAAAAA+TGG | - | 15130:201962-201981 | None:intergenic | 20.0% |
| !! | TTACATTCTATCTTTATGTA+TGG | + | 15130:202420-202439 | MS.gene49868:intron | 20.0% |
| !! | TTATTGTCTATCTTAATAAG+TGG | + | 15130:201225-201244 | MS.gene49868:intron | 20.0% |
| !!! | AAATGATCAATGTAATGTTT+TGG | + | 15130:199474-199493 | MS.gene49868:intron | 20.0% |
| !!! | AAATTTAAACTCTAAGACAA+TGG | - | 15130:200600-200619 | None:intergenic | 20.0% |
| !!! | ACCTTATTTAAATACATAGT+AGG | - | 15130:199433-199452 | None:intergenic | 20.0% |
| !!! | ATAAAACAAAAGTATACGAA+AGG | - | 15130:201519-201538 | None:intergenic | 20.0% |
| !!! | ATATCATTCCTCTTTTTTTT+AGG | + | 15130:202166-202185 | MS.gene49868:intron | 20.0% |
| !!! | ATGATATTGTACTTGTTATT+AGG | + | 15130:200010-200029 | MS.gene49868:intron | 20.0% |
| !!! | GTTTTTTTTGCTTTTAATGT+TGG | + | 15130:199336-199355 | MS.gene49868:intron | 20.0% |
| !!! | TAATGTTTTGGTCTTTTTTT+TGG | + | 15130:199486-199505 | MS.gene49868:intron | 20.0% |
| !!! | TATCATTCCTCTTTTTTTTA+GGG | + | 15130:202167-202186 | MS.gene49868:intron | 20.0% |
| !!! | TCACAAAAGTTGTTTAAAAT+TGG | + | 15130:202135-202154 | MS.gene49868:intron | 20.0% |
| !!! | TCTAAAGGTAATCTTTAAAA+TGG | - | 15130:202810-202829 | None:intergenic | 20.0% |
| !!! | TGATATTTTTGATGGATTTT+TGG | + | 15130:199216-199235 | MS.gene49868:intron | 20.0% |
| !!! | TTATTGTTGATTGAATGATT+AGG | + | 15130:199246-199265 | MS.gene49868:intron | 20.0% |
| !!! | TTCATTTTTACAGAATCATT+CGG | - | 15130:201832-201851 | None:intergenic | 20.0% |
| ! | AAAACAAACTTTCACTCTTT+AGG | - | 15130:199295-199314 | None:intergenic | 25.0% |
| ! | AAATAAGGTATGGTTTAAGT+TGG | + | 15130:199444-199463 | MS.gene49868:intron | 25.0% |
| ! | AAGGTTAAATTAACATGTCA+TGG | + | 15130:200631-200650 | MS.gene49868:intron | 25.0% |
| ! | AATAACCATAAAACTAAGTC+TGG | - | 15130:200514-200533 | None:intergenic | 25.0% |
| ! | AATTCTGAATCATTAAGCAA+AGG | - | 15130:200301-200320 | None:intergenic | 25.0% |
| ! | AGAAAAAAACACAATGTTTG+AGG | - | 15130:202543-202562 | None:intergenic | 25.0% |
| ! | ATAGATTCTAGATTCTAGAT+AGG | - | 15130:203042-203061 | None:intergenic | 25.0% |
| ! | ATGATTCTGTAAAAATGAAC+TGG | + | 15130:201833-201852 | MS.gene49868:intron | 25.0% |
| ! | ATTCTGTGATTTATATCTCA+TGG | + | 15130:201645-201664 | MS.gene49868:CDS | 25.0% |
| ! | CAAAAGTAGAAAAATTGTCT+TGG | - | 15130:201156-201175 | None:intergenic | 25.0% |
| ! | CATGATGAGTGATTAATATA+TGG | - | 15130:201714-201733 | None:intergenic | 25.0% |
| ! | CTATGTTTATGTTTCTCTTT+AGG | + | 15130:200984-201003 | MS.gene49868:intron | 25.0% |
| ! | GACTTGTAGATTATGTATTA+AGG | + | 15130:199713-199732 | MS.gene49868:intron | 25.0% |
| ! | TAAGAATCTCATTACTTTAG+GGG | + | 15130:200871-200890 | MS.gene49868:intron | 25.0% |
| ! | TATCAAAATAGAGGACAAAA+AGG | - | 15130:203423-203442 | None:intergenic | 25.0% |
| ! | TATTTCTCCCTAAAAAAAAG+AGG | - | 15130:202177-202196 | None:intergenic | 25.0% |
| ! | TCCAATAGAATGATGAAAAA+AGG | - | 15130:199112-199131 | None:intergenic | 25.0% |
| ! | TGAGATGTTACAAAATTAGA+TGG | + | 15130:203277-203296 | MS.gene49868:intron | 25.0% |
| ! | TGATTCTGTAAAAATGAACT+GGG | + | 15130:201834-201853 | MS.gene49868:intron | 25.0% |
| ! | TGGTATATGATAGAACATTA+TGG | + | 15130:199846-199865 | MS.gene49868:intron | 25.0% |
| !! | ATCTTAGGGTAAGATATTTT+TGG | - | 15130:201879-201898 | None:intergenic | 25.0% |
| !! | ATTCCAATCATATTTTACCA+TGG | - | 15130:203108-203127 | None:intergenic | 25.0% |
| !! | CAAGACAATTTTTCTACTTT+TGG | + | 15130:201154-201173 | MS.gene49868:intron | 25.0% |
| !! | TATGTTTCTCTTTAGGTTAA+AGG | + | 15130:200991-201010 | MS.gene49868:intron | 25.0% |
| !! | TTTATGATCTTTTCCTAGTT+TGG | + | 15130:202239-202258 | MS.gene49868:intron | 25.0% |
| !!! | ACCTTTTTTCATCATTCTAT+TGG | + | 15130:199108-199127 | MS.gene49868:intron | 25.0% |
| !!! | ATCATAAGAAATGTCGATTT+GGG | + | 15130:200568-200587 | MS.gene49868:intron | 25.0% |
| !!! | GTTTCTCTTATAGTTTTTTC+AGG | - | 15130:199785-199804 | None:intergenic | 25.0% |
| AAAAGGATGACTGCATAAAA+AGG | - | 15130:202644-202663 | None:intergenic | 30.0% | |
| AAACATAAGTATGCAGCAAT+CGG | - | 15130:203392-203411 | None:intergenic | 30.0% | |
| AACAACATTAAAGAGAGAGT+TGG | + | 15130:199620-199639 | MS.gene49868:intron | 30.0% | |
| AACTTATTGGTCATAATAGC+CGG | - | 15130:201419-201438 | None:intergenic | 30.0% | |
| AAGTACAATATCATGAGCTT+TGG | - | 15130:200004-200023 | None:intergenic | 30.0% | |
| AATATTATAACACGACACCA+TGG | + | 15130:203088-203107 | MS.gene49868:intron | 30.0% | |
| AATCATTAAGCAAAGGAAAG+TGG | - | 15130:200294-200313 | None:intergenic | 30.0% | |
| ACAACATTAAAGAGAGAGTT+GGG | + | 15130:199621-199640 | MS.gene49868:intron | 30.0% | |
| ACACCATGGTAAAATATGAT+TGG | + | 15130:203102-203121 | MS.gene49868:intron | 30.0% | |
| AGATCTAGAGATTAATGAGT+TGG | + | 15130:199814-199833 | MS.gene49868:intron | 30.0% | |
| AGTATAAAAAAGTAGTGCAC+AGG | - | 15130:203131-203150 | None:intergenic | 30.0% | |
| ATAAAACATCATACCTTGAC+TGG | - | 15130:200263-200282 | None:intergenic | 30.0% | |
| ATAGTAACATACAGCTAACT+GGG | - | 15130:203555-203574 | None:intergenic | 30.0% | |
| ATCATTAAGCAAAGGAAAGT+GGG | - | 15130:200293-200312 | None:intergenic | 30.0% | |
| ATGACCAATAAGTTGTATGT+AGG | + | 15130:201425-201444 | MS.gene49868:intron | 30.0% | |
| ATTAAGGAGAGTAGATTAGA+TGG | + | 15130:199729-199748 | MS.gene49868:intron | 30.0% | |
| ATTAGGATATTCGCACTATT+GGG | + | 15130:200027-200046 | MS.gene49868:intron | 30.0% | |
| CAATATAGTTGCGTATAAAC+TGG | + | 15130:201311-201330 | MS.gene49868:intron | 30.0% | |
| CACACACTTCGTATTTATAA+TGG | - | 15130:200788-200807 | None:intergenic | 30.0% | |
| CTTTACCTTCAGATGAATTA+CGG | + | 15130:200207-200226 | MS.gene49868:CDS | 30.0% | |
| GTCTTATGTAATGAACTTGA+TGG | + | 15130:201733-201752 | MS.gene49868:intron | 30.0% | |
| GTTACCTACATACAACTTAT+TGG | - | 15130:201432-201451 | None:intergenic | 30.0% | |
| TATAGTAACATACAGCTAAC+TGG | - | 15130:203556-203575 | None:intergenic | 30.0% | |
| TATTAGGATATTCGCACTAT+TGG | + | 15130:200026-200045 | MS.gene49868:intron | 30.0% | |
| TGTAAAAATGAACTGGGATA+TGG | + | 15130:201840-201859 | MS.gene49868:intron | 30.0% | |
| TTCGAACTAAATTTGATCTC+AGG | + | 15130:202346-202365 | MS.gene49868:intron | 30.0% | |
| TTTACCTTCAGATGAATTAC+GGG | + | 15130:200208-200227 | MS.gene49868:CDS | 30.0% | |
| ! | AAATGAGCTTTTATGTGTCA+TGG | + | 15130:199379-199398 | MS.gene49868:intron | 30.0% |
| ! | GATCATAAGAAATGTCGATT+TGG | + | 15130:200567-200586 | MS.gene49868:intron | 30.0% |
| ! | GTCATGGTTTTTGTCAAATT+GGG | + | 15130:199395-199414 | MS.gene49868:intron | 30.0% |
| ! | TAATGAGTTGGATCGAAATA+TGG | + | 15130:199826-199845 | MS.gene49868:intron | 30.0% |
| ! | TCATGGTTTTTGTCAAATTG+GGG | + | 15130:199396-199415 | MS.gene49868:intron | 30.0% |
| ! | TGTCATGGTTTTTGTCAAAT+TGG | + | 15130:199394-199413 | MS.gene49868:intron | 30.0% |
| !! | ATGGTGTCGTGTTATAATAT+TGG | - | 15130:203089-203108 | None:intergenic | 30.0% |
| !! | TGGATTATTTCTGCAGAAAA+AGG | + | 15130:202440-202459 | MS.gene49868:intron | 30.0% |
| !! | TTTAAACTCTAAGACAATGG+TGG | - | 15130:200597-200616 | None:intergenic | 30.0% |
| !!! | CATAGCTTGTATTTTAAAGC+TGG | - | 15130:200969-200988 | None:intergenic | 30.0% |
| !!! | CTTTTTTCGTCTCTTCTTAT+TGG | - | 15130:202111-202130 | None:intergenic | 30.0% |
| !!! | GCTTTTGTTACTTTCAAGAT+CGG | + | 15130:199053-199072 | MS.gene49868:CDS | 30.0% |
| !!! | TGTGCACTACTTTTTTATAC+TGG | + | 15130:203130-203149 | MS.gene49868:intron | 30.0% |
| !!! | TTTTGGAGCATGTGTAAATA+AGG | + | 15130:199503-199522 | MS.gene49868:intron | 30.0% |
| AACAACAAATCATGTTGCAG+AGG | + | 15130:203663-203682 | MS.gene49868:intron | 35.0% | |
| AATGGCAAAAGATGTTTCTC+AGG | - | 15130:202792-202811 | None:intergenic | 35.0% | |
| ACTTATTGGTCATAATAGCC+GGG | - | 15130:201418-201437 | None:intergenic | 35.0% | |
| AGAGTAAAGGTTCTCTCTAA+AGG | - | 15130:202825-202844 | None:intergenic | 35.0% | |
| ATAGTTGCGTATAAACTGGA+TGG | + | 15130:201315-201334 | MS.gene49868:intron | 35.0% | |
| ATCCACAAACATTCATGCAT+TGG | - | 15130:200327-200346 | None:intergenic | 35.0% | |
| ATGAAAAAAGGTAGAGAGAG+AGG | - | 15130:199100-199119 | None:intergenic | 35.0% | |
| ATGCACTCTTTATGTAGTAG+TGG | + | 15130:200480-200499 | MS.gene49868:intron | 35.0% | |
| ATTGGTTAAGCAGCTAAAAG+AGG | + | 15130:201071-201090 | MS.gene49868:intron | 35.0% | |
| CAACATTAAAGAGAGAGTTG+GGG | + | 15130:199622-199641 | MS.gene49868:intron | 35.0% | |
| CCAAAGAAAAGTTCCAAAGA+TGG | - | 15130:203758-203777 | None:intergenic | 35.0% | |
| GATTGAATGATTAGGAACCA+GGG | + | 15130:199254-199273 | MS.gene49868:intron | 35.0% | |
| GGTATGGGATATCAAAATAG+AGG | - | 15130:203432-203451 | None:intergenic | 35.0% | |
| GTGATTTATATCTCATGGAC+CGG | + | 15130:201650-201669 | MS.gene49868:CDS | 35.0% | |
| TAGCACAAATTCAAATGCGT+CGG | + | 15130:200166-200185 | MS.gene49868:CDS | 35.0% | |
| TAGTTGCGTATAAACTGGAT+GGG | + | 15130:201316-201335 | MS.gene49868:intron | 35.0% | |
| TGATTGAATGATTAGGAACC+AGG | + | 15130:199253-199272 | MS.gene49868:intron | 35.0% | |
| TGATTTATATCTCATGGACC+GGG | + | 15130:201651-201670 | MS.gene49868:CDS | 35.0% | |
| TGTAAACTACAGCACACAAA+AGG | - | 15130:202661-202680 | None:intergenic | 35.0% | |
| TTAGGATATTCGCACTATTG+GGG | + | 15130:200028-200047 | MS.gene49868:intron | 35.0% | |
| TTCGTCAATTAGAACCAGAT+TGG | + | 15130:203501-203520 | MS.gene49868:CDS | 35.0% | |
| TTTGACTGTGAACATTTGCA+CGG | + | 15130:202743-202762 | MS.gene49868:intron | 35.0% | |
| TTTGTTTGACCTATGTTTCC+CGG | + | 15130:201397-201416 | MS.gene49868:intron | 35.0% | |
| ! | ACACATGTTGATTGACAACA+TGG | + | 15130:202678-202697 | MS.gene49868:intron | 35.0% |
| ! | AGGAGATGGTAATTTCTAGA+AGG | - | 15130:200545-200564 | None:intergenic | 35.0% |
| ! | ATATGTTTGTTGCCATTTGC+TGG | + | 15130:203182-203201 | MS.gene49868:intron | 35.0% |
| ! | CACATGTTGATTGACAACAT+GGG | + | 15130:202679-202698 | MS.gene49868:intron | 35.0% |
| ! | CTTGCAAGCATCAGAATTTT+AGG | - | 15130:203240-203259 | None:intergenic | 35.0% |
| ! | GCAGTTCGTTCTGTTTTATA+AGG | - | 15130:203716-203735 | None:intergenic | 35.0% |
| ! | GCTACAGATCACAATTTTGT+CGG | - | 15130:203314-203333 | None:intergenic | 35.0% |
| ! | TAATTAGTAAGCACTAGCCT+AGG | - | 15130:200740-200759 | None:intergenic | 35.0% |
| !! | TTGCTTTTAATGTTGGGTGT+GGG | + | 15130:199343-199362 | MS.gene49868:intron | 35.0% |
| !! | TTTGCTTTTAATGTTGGGTG+TGG | + | 15130:199342-199361 | MS.gene49868:intron | 35.0% |
| !!! | AATTTTTTCAGCCAACCTTG+GGG | + | 15130:200401-200420 | MS.gene49868:intron | 35.0% |
| !!! | CATCAGAATTTTAGGTTCCA+AGG | - | 15130:203232-203251 | None:intergenic | 35.0% |
| !!! | CCATCTTTGGAACTTTTCTT+TGG | + | 15130:203755-203774 | MS.gene49868:CDS | 35.0% |
| !!! | GAATTTTTTCAGCCAACCTT+GGG | + | 15130:200400-200419 | MS.gene49868:intron | 35.0% |
| !!! | GTGTTCCAGACTTAGTTTTA+TGG | + | 15130:200506-200525 | MS.gene49868:intron | 35.0% |
| !!! | TGAATTTTTTCAGCCAACCT+TGG | + | 15130:200399-200418 | MS.gene49868:intron | 35.0% |
| AAGTTAACCACCTTCTTGCT+GGG | + | 15130:202569-202588 | MS.gene49868:intron | 40.0% | |
| AATAAACCGTCATCATGCCT+AGG | + | 15130:202926-202945 | MS.gene49868:intron | 40.0% | |
| AGAGAACCTGCATATAGGTA+TGG | - | 15130:203448-203467 | None:intergenic | 40.0% | |
| AGAGTAGCAAGAGGAATACT+AGG | - | 15130:202372-202391 | None:intergenic | 40.0% | |
| AGATCTCCTAATCCTACACA+AGG | + | 15130:200098-200117 | MS.gene49868:CDS | 40.0% | |
| AGCCAATGCATGAATGTTTG+TGG | + | 15130:200322-200341 | MS.gene49868:intron | 40.0% | |
| AGCTAACTGGGTGACAATTT+CGG | - | 15130:203543-203562 | None:intergenic | 40.0% | |
| ATAAACCGTCATCATGCCTA+GGG | + | 15130:202927-202946 | MS.gene49868:intron | 40.0% | |
| ATGTAGCTAATCCCACTTAG+TGG | + | 15130:199882-199901 | MS.gene49868:intron | 40.0% | |
| CAACAATACTTCTAGCACAG+AGG | - | 15130:201614-201633 | None:intergenic | 40.0% | |
| CAGTATGTGTGTTCCAAACT+AGG | - | 15130:202255-202274 | None:intergenic | 40.0% | |
| CCATGCAAGGACAATGTAAA+AGG | + | 15130:202989-203008 | MS.gene49868:intron | 40.0% | |
| CCTAGAGTATACAACTTCCT+AGG | + | 15130:200720-200739 | MS.gene49868:intron | 40.0% | |
| CCTAGGAAGTTGTATACTCT+AGG | - | 15130:200723-200742 | None:intergenic | 40.0% | |
| GAAGTTGAGTGAAGGAAGAA+AGG | + | 15130:200438-200457 | MS.gene49868:CDS | 40.0% | |
| GAGAACCTGCATATAGGTAT+GGG | - | 15130:203447-203466 | None:intergenic | 40.0% | |
| GATATCCCATACCTATATGC+AGG | + | 15130:203439-203458 | MS.gene49868:intron | 40.0% | |
| GATCTCCTAATCCTACACAA+GGG | + | 15130:200099-200118 | MS.gene49868:CDS | 40.0% | |
| GGTTGTTAATTATCCAACCC+TGG | - | 15130:199274-199293 | None:intergenic | 40.0% | |
| TAATCCCACTTAGTGGGATA+AGG | + | 15130:199889-199908 | MS.gene49868:intron | 40.0% | |
| TCATAATAGCCGGGAAACAT+AGG | - | 15130:201409-201428 | None:intergenic | 40.0% | |
| TCGACATTTCTTATGATCGC+AGG | - | 15130:200565-200584 | None:intergenic | 40.0% | |
| TGGAATAGTCAGATCACTAG+TGG | + | 15130:199749-199768 | MS.gene49868:intron | 40.0% | |
| TGTAGCTAATCCCACTTAGT+GGG | + | 15130:199883-199902 | MS.gene49868:intron | 40.0% | |
| TTGTAGCGTTAGAAGAAGCA+GGG | + | 15130:202466-202485 | MS.gene49868:CDS | 40.0% | |
| TTTCACCTCATCAAACGCTT+TGG | + | 15130:199029-199048 | MS.gene49868:CDS | 40.0% | |
| TTTCTTATGATCGCAGGAGA+TGG | - | 15130:200559-200578 | None:intergenic | 40.0% | |
| TTTGAATTTGTGCTAGCTCC+AGG | - | 15130:200161-200180 | None:intergenic | 40.0% | |
| TTTGGGCATATATTGCAGAG+AGG | + | 15130:199689-199708 | MS.gene49868:intron | 40.0% | |
| ! | CCTTTTACATTGTCCTTGCA+TGG | - | 15130:202992-203011 | None:intergenic | 40.0% |
| ! | CTGTTGCGATTGTTTTCACT+TGG | + | 15130:200066-200085 | MS.gene49868:CDS | 40.0% |
| ! | TTGCGATTGTTTTCACTTGG+AGG | + | 15130:200069-200088 | MS.gene49868:CDS | 40.0% |
| ! | TTTGTGTCGATATGCCAATC+TGG | - | 15130:203518-203537 | None:intergenic | 40.0% |
| !! | ACTAAGTGGGATTAGCTACA+TGG | - | 15130:199883-199902 | None:intergenic | 40.0% |
| !! | CTCTGTGCTAGAAGTATTGT+TGG | + | 15130:201612-201631 | MS.gene49868:CDS | 40.0% |
| !! | CTGTTTTATAAGGCGCTATG+TGG | - | 15130:203706-203725 | None:intergenic | 40.0% |
| !! | GAAGGTAAAGAAGCATCAGA+AGG | - | 15130:200197-200216 | None:intergenic | 40.0% |
| !! | TGCTCTTTTCAAGACATCCT+TGG | + | 15130:203212-203231 | MS.gene49868:intron | 40.0% |
| ACCAATGGGAGAAAAGATGG+TGG | + | 15130:199649-199668 | MS.gene49868:intron | 45.0% | |
| AGAATGTTAACCAATGCCCC+CGG | + | 15130:201045-201064 | MS.gene49868:intron | 45.0% | |
| AGCACCAATGGGAGAAAAGA+TGG | + | 15130:199646-199665 | MS.gene49868:intron | 45.0% | |
| AGCGTTTGATGAGGTGAAAG+AGG | - | 15130:199028-199047 | None:intergenic | 45.0% | |
| AGTCAGATCACTAGTGGTAG+AGG | + | 15130:199755-199774 | MS.gene49868:intron | 45.0% | |
| CTTGTAGCGTTAGAAGAAGC+AGG | + | 15130:202465-202484 | MS.gene49868:CDS | 45.0% | |
| GAAGTTAACCACCTTCTTGC+TGG | + | 15130:202568-202587 | MS.gene49868:intron | 45.0% | |
| GAATGATTAGGAACCAGGGT+TGG | + | 15130:199258-199277 | MS.gene49868:intron | 45.0% | |
| GAGCATATACAGCCAGCAAA+TGG | - | 15130:203197-203216 | None:intergenic | 45.0% | |
| GCTAACTGGGTGACAATTTC+GGG | - | 15130:203542-203561 | None:intergenic | 45.0% | |
| GCTGAAGAGAACCTGCATAT+AGG | - | 15130:203453-203472 | None:intergenic | 45.0% | |
| GGTATTCACTTCAGGTGGTT+TGG | + | 15130:202488-202507 | MS.gene49868:CDS | 45.0% | |
| TAGGTAACCTGTCGTCTTCT+TGG | + | 15130:201444-201463 | MS.gene49868:intron | 45.0% | |
| TCTTCTTGGAGTGATCCTTG+AGG | + | 15130:201458-201477 | MS.gene49868:CDS | 45.0% | |
| TGAGTTCTTTCAGCCAGTCA+AGG | + | 15130:200247-200266 | MS.gene49868:CDS | 45.0% | |
| TGCTACAACAGAGTAGCAAG+AGG | - | 15130:202381-202400 | None:intergenic | 45.0% | |
| TGTAGCGTTAGAAGAAGCAG+GGG | + | 15130:202467-202486 | MS.gene49868:CDS | 45.0% | |
| TGTGCCCGTAATTCATCTGA+AGG | - | 15130:200215-200234 | None:intergenic | 45.0% | |
| TGTGTTCAGTGCTCCATCTT+TGG | + | 15130:203742-203761 | MS.gene49868:CDS | 45.0% | |
| TTAGTGGGATAAGGCTCTCT+TGG | + | 15130:199898-199917 | MS.gene49868:intron | 45.0% | |
| ! | AAGCACCAAAGCGTTTGATG+AGG | - | 15130:199037-199056 | None:intergenic | 45.0% |
| ! | AGAGCCTTATCCCACTAAGT+GGG | - | 15130:199896-199915 | None:intergenic | 45.0% |
| ! | TCCACCATCTTTTCTCCCAT+TGG | - | 15130:199653-199672 | None:intergenic | 45.0% |
| ! | TGGGAATACTTGATGACACG+AGG | + | 15130:201335-201354 | MS.gene49868:intron | 45.0% |
| !! | AGGTGGTTTGGTTAAGGACA+AGG | + | 15130:202500-202519 | MS.gene49868:CDS | 45.0% |
| !! | CACTTCAGGTGGTTTGGTTA+AGG | + | 15130:202494-202513 | MS.gene49868:CDS | 45.0% |
| !! | GAGGTGAAAGAGGTCTTGTT+TGG | - | 15130:199018-199037 | None:intergenic | 45.0% |
| !! | GTGAAAGAGGTCTTGTTTGG+AGG | - | 15130:199015-199034 | None:intergenic | 45.0% |
| !! | TGGAGCACTGAACACATTAG+CGG | - | 15130:203738-203757 | None:intergenic | 45.0% |
| !!! | TTAATTTGTTATATTTTTTT+AGG | + | 15130:201022-201041 | MS.gene49868:intron | 5.0% |
| AAGTAGTCCAGAGGAGCTTC+AGG | + | 15130:201482-201501 | MS.gene49868:CDS | 50.0% | |
| AATGTTAACCAATGCCCCCG+GGG | + | 15130:201047-201066 | MS.gene49868:intron | 50.0% | |
| AGACCAGGCTTAGGTGGTTT+GGG | + | 15130:199672-199691 | MS.gene49868:intron | 50.0% | |
| AGAGTTGGGGTAGCACCAAT+GGG | + | 15130:199635-199654 | MS.gene49868:intron | 50.0% | |
| ATATCTCATGGACCGGGTTC+TGG | + | 15130:201657-201676 | MS.gene49868:CDS | 50.0% | |
| ATCCTACACAAGGGAGGCAA+CGG | + | 15130:200108-200127 | MS.gene49868:CDS | 50.0% | |
| ATCGTTGTCACCACCAGACA+CGG | - | 15130:198988-199007 | None:intergenic | 50.0% | |
| ATTCCTTAACAAGTGCCCCG+GGG | + | 15130:201177-201196 | MS.gene49868:intron | 50.0% | |
| CCTCTGGACTACTTTCCTCA+AGG | - | 15130:201476-201495 | None:intergenic | 50.0% | |
| CCTTGAGGAAAGTAGTCCAG+AGG | + | 15130:201473-201492 | MS.gene49868:CDS | 50.0% | |
| CTCCTAATCCTACACAAGGG+AGG | + | 15130:200102-200121 | MS.gene49868:CDS | 50.0% | |
| GAATGTTAACCAATGCCCCC+GGG | + | 15130:201046-201065 | MS.gene49868:intron | 50.0% | |
| GATCACTCCAAGAAGACGAC+AGG | - | 15130:201454-201473 | None:intergenic | 50.0% | |
| GATTCCTTAACAAGTGCCCC+GGG | + | 15130:201176-201195 | MS.gene49868:intron | 50.0% | |
| GGATATTCGCACTATTGGGG+CGG | + | 15130:200031-200050 | MS.gene49868:intron | 50.0% | |
| GGATTCCTTAACAAGTGCCC+CGG | + | 15130:201175-201194 | MS.gene49868:intron | 50.0% | |
| GGTGGTGCATCTAGTAATCC+TGG | + | 15130:200140-200159 | MS.gene49868:CDS | 50.0% | |
| GTGAGGCAGAAGTTGAGTGA+AGG | + | 15130:200430-200449 | MS.gene49868:CDS | 50.0% | |
| GTTGGGTGTGGGTAGAAACT+AGG | + | 15130:199354-199373 | MS.gene49868:intron | 50.0% | |
| TAGCTGCTTAACCAATGCCC+CGG | - | 15130:201067-201086 | None:intergenic | 50.0% | |
| TGCCTCCCTTGTGTAGGATT+AGG | - | 15130:200107-200126 | None:intergenic | 50.0% | |
| TTTCACACCTGAAGCTCCTC+TGG | - | 15130:201492-201511 | None:intergenic | 50.0% | |
| ! | CTCTTCAGCAGCACTGAGAA+TGG | + | 15130:203464-203483 | MS.gene49868:CDS | 50.0% |
| ! | GAGAGCCTTATCCCACTAAG+TGG | - | 15130:199897-199916 | None:intergenic | 50.0% |
| !! | GAAGCAGGGGTATTCACTTC+AGG | + | 15130:202480-202499 | MS.gene49868:CDS | 50.0% |
| !! | GAGAAAAGATGGTGGAGACC+AGG | + | 15130:199657-199676 | MS.gene49868:intron | 50.0% |
| AACACTGCCCAGCAAGAAGG+TGG | - | 15130:202579-202598 | None:intergenic | 55.0% | |
| AACCGTCATCATGCCTAGGG+AGG | + | 15130:202930-202949 | MS.gene49868:intron | 55.0% | |
| ACCGTCATCATGCCTAGGGA+GGG | + | 15130:202931-202950 | MS.gene49868:intron | 55.0% | |
| AGCTGCTTAACCAATGCCCC+GGG | - | 15130:201066-201085 | None:intergenic | 55.0% | |
| AGGCAACGGAAAAGGCAAGG+TGG | + | 15130:200122-200141 | MS.gene49868:CDS | 55.0% | |
| ATGCCCAAACCACCTAAGCC+TGG | - | 15130:199678-199697 | None:intergenic | 55.0% | |
| CAACCTTGGGGCAGATAGTG+AGG | + | 15130:200413-200432 | MS.gene49868:CDS | 55.0% | |
| CACAAGGGAGGCAACGGAAA+AGG | + | 15130:200114-200133 | MS.gene49868:CDS | 55.0% | |
| CGCTTTCGTCATCCAGAACC+CGG | - | 15130:201672-201691 | None:intergenic | 55.0% | |
| CTCACTATCTGCCCCAAGGT+TGG | - | 15130:200415-200434 | None:intergenic | 55.0% | |
| GAGACCAGGCTTAGGTGGTT+TGG | + | 15130:199671-199690 | MS.gene49868:intron | 55.0% | |
| GAGAGTTGGGGTAGCACCAA+TGG | + | 15130:199634-199653 | MS.gene49868:intron | 55.0% | |
| TATTTGTGACCCCCCTCCCT+AGG | - | 15130:202946-202965 | None:intergenic | 55.0% | |
| TCTTGTTAACCAGTGCCCCC+GGG | - | 15130:201196-201215 | None:intergenic | 55.0% | |
| TGCAACACTGCCCAGCAAGA+AGG | - | 15130:202582-202601 | None:intergenic | 55.0% | |
| TTCCGTTGCCTCCCTTGTGT+AGG | - | 15130:200113-200132 | None:intergenic | 55.0% | |
| TTCCTTAACAAGTGCCCCGG+GGG | + | 15130:201178-201197 | MS.gene49868:intron | 55.0% | |
| ! | GTCTTGTTAACCAGTGCCCC+CGG | - | 15130:201197-201216 | None:intergenic | 55.0% |
| !! | AGATGGTGGAGACCAGGCTT+AGG | + | 15130:199663-199682 | MS.gene49868:intron | 55.0% |
| !! | GCAGGGGTATTCACTTCAGG+TGG | + | 15130:202483-202502 | MS.gene49868:CDS | 55.0% |
| !! | GGTTCTGGATGACGAAAGCG+AGG | + | 15130:201672-201691 | MS.gene49868:CDS | 55.0% |
| CCCCTCCCTAGGCATGATGA+CGG | - | 15130:202935-202954 | None:intergenic | 60.0% | |
| CCGTCATCATGCCTAGGGAG+GGG | + | 15130:202932-202951 | MS.gene49868:intron | 60.0% | |
| CGTCATCATGCCTAGGGAGG+GGG | + | 15130:202933-202952 | MS.gene49868:intron | 60.0% | |
| CTGCCTCACTATCTGCCCCA+AGG | - | 15130:200419-200438 | None:intergenic | 60.0% | |
| CTGCTTAACCAATGCCCCGG+GGG | - | 15130:201064-201083 | None:intergenic | 60.0% | |
| CTTGTTAACCAGTGCCCCCG+GGG | - | 15130:201195-201214 | None:intergenic | 60.0% | |
| GCTGCTTAACCAATGCCCCG+GGG | - | 15130:201065-201084 | None:intergenic | 60.0% | |
| GGGAGGCAACGGAAAAGGCA+AGG | + | 15130:200119-200138 | MS.gene49868:CDS | 60.0% | |
| GTCATCATGCCTAGGGAGGG+GGG | + | 15130:202934-202953 | MS.gene49868:intron | 60.0% | |
| TGGTGGAGACCAGGCTTAGG+TGG | + | 15130:199666-199685 | MS.gene49868:intron | 60.0% | |
| AACCAATGCCCCCGGGGCAT+TGG | + | 15130:201053-201072 | MS.gene49868:intron | 65.0% | |
| CGCACTATTGGGGCGGTAGC+TGG | + | 15130:200038-200057 | MS.gene49868:CDS | 65.0% | |
| ! | AACCAATGCCCCGGGGGCAT+TGG | - | 15130:201058-201077 | None:intergenic | 65.0% |
| ! | TGCCCCCGGGGCACTTGTTA+AGG | - | 15130:201183-201202 | None:intergenic | 65.0% |
| ! | AACAAGTGCCCCGGGGGCAC+TGG | + | 15130:201184-201203 | MS.gene49868:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15130 | gene | 198981 | 203787 | 198981 | ID=MS.gene49868 |
| 15130 | mRNA | 198981 | 203787 | 198981 | ID=MS.gene49868.t1;Parent=MS.gene49868 |
| 15130 | exon | 198981 | 199091 | 198981 | ID=MS.gene49868.t1.exon1;Parent=MS.gene49868.t1 |
| 15130 | CDS | 198981 | 199091 | 198981 | ID=cds.MS.gene49868.t1;Parent=MS.gene49868.t1 |
| 15130 | exon | 200032 | 200268 | 200032 | ID=MS.gene49868.t1.exon2;Parent=MS.gene49868.t1 |
| 15130 | CDS | 200032 | 200268 | 200032 | ID=cds.MS.gene49868.t1;Parent=MS.gene49868.t1 |
| 15130 | exon | 200412 | 200459 | 200412 | ID=MS.gene49868.t1.exon3;Parent=MS.gene49868.t1 |
| 15130 | CDS | 200412 | 200459 | 200412 | ID=cds.MS.gene49868.t1;Parent=MS.gene49868.t1 |
| 15130 | exon | 201447 | 201503 | 201447 | ID=MS.gene49868.t1.exon4;Parent=MS.gene49868.t1 |
| 15130 | CDS | 201447 | 201503 | 201447 | ID=cds.MS.gene49868.t1;Parent=MS.gene49868.t1 |
| 15130 | exon | 201592 | 201693 | 201592 | ID=MS.gene49868.t1.exon5;Parent=MS.gene49868.t1 |
| 15130 | CDS | 201592 | 201693 | 201592 | ID=cds.MS.gene49868.t1;Parent=MS.gene49868.t1 |
| 15130 | exon | 202456 | 202521 | 202456 | ID=MS.gene49868.t1.exon6;Parent=MS.gene49868.t1 |
| 15130 | CDS | 202456 | 202521 | 202456 | ID=cds.MS.gene49868.t1;Parent=MS.gene49868.t1 |
| 15130 | exon | 203461 | 203562 | 203461 | ID=MS.gene49868.t1.exon7;Parent=MS.gene49868.t1 |
| 15130 | CDS | 203461 | 203562 | 203461 | ID=cds.MS.gene49868.t1;Parent=MS.gene49868.t1 |
| 15130 | exon | 203683 | 203787 | 203683 | ID=MS.gene49868.t1.exon8;Parent=MS.gene49868.t1 |
| 15130 | CDS | 203683 | 203787 | 203683 | ID=cds.MS.gene49868.t1;Parent=MS.gene49868.t1 |
| Gene Sequence |
| Protein sequence |
