Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51173.t1 | ACC85690.1 | 99.8 | 418 | 1 | 0 | 1 | 418 | 1 | 418 | 3.00E-172 | 614.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51173.t1 | Q9SWF9 | 93.3 | 418 | 27 | 1 | 1 | 418 | 1 | 417 | 1.1e-157 | 557.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51173.t1 | B2MVK8 | 99.8 | 418 | 1 | 0 | 1 | 418 | 1 | 418 | 2.2e-172 | 614.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene51173.t1 | TF | C3H |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049285 | MS.gene51173 | 0.828411 | 9.13E-55 | -1.69E-46 |
MS.gene049320 | MS.gene51173 | 0.821688 | 3.54E-53 | -1.69E-46 |
MS.gene050163 | MS.gene51173 | 0.833753 | 4.45E-56 | -1.69E-46 |
MS.gene050165 | MS.gene51173 | 0.856199 | 3.78E-62 | -1.69E-46 |
MS.gene050333 | MS.gene51173 | 0.823452 | 1.37E-53 | -1.69E-46 |
MS.gene050504 | MS.gene51173 | 0.819368 | 1.20E-52 | -1.69E-46 |
MS.gene050518 | MS.gene51173 | 0.843094 | 1.73E-58 | -1.69E-46 |
MS.gene050612 | MS.gene51173 | 0.827794 | 1.28E-54 | -1.69E-46 |
MS.gene050699 | MS.gene51173 | 0.801313 | 9.55E-49 | -1.69E-46 |
MS.gene050876 | MS.gene51173 | 0.851281 | 9.83E-61 | -1.69E-46 |
MS.gene05087 | MS.gene51173 | 0.820996 | 5.11E-53 | -1.69E-46 |
MS.gene050904 | MS.gene51173 | 0.821244 | 4.48E-53 | -1.69E-46 |
MS.gene050986 | MS.gene51173 | 0.831514 | 1.60E-55 | -1.69E-46 |
MS.gene051317 | MS.gene51173 | 0.821807 | 3.32E-53 | -1.69E-46 |
MS.gene052482 | MS.gene51173 | 0.801638 | 8.19E-49 | -1.69E-46 |
MS.gene052486 | MS.gene51173 | 0.806579 | 7.68E-50 | -1.69E-46 |
MS.gene054642 | MS.gene51173 | 0.802458 | 5.56E-49 | -1.69E-46 |
MS.gene054954 | MS.gene51173 | 0.832629 | 8.48E-56 | -1.69E-46 |
MS.gene055362 | MS.gene51173 | 0.802734 | 4.87E-49 | -1.69E-46 |
MS.gene055634 | MS.gene51173 | 0.838009 | 3.71E-57 | -1.69E-46 |
MS.gene055751 | MS.gene51173 | 0.817045 | 4.04E-52 | -1.69E-46 |
MS.gene055776 | MS.gene51173 | 0.81945 | 1.15E-52 | -1.69E-46 |
MS.gene055849 | MS.gene51173 | 0.836064 | 1.16E-56 | -1.69E-46 |
MS.gene056450 | MS.gene51173 | 0.801215 | 1.00E-48 | -1.69E-46 |
MS.gene056504 | MS.gene51173 | 0.806357 | 8.55E-50 | -1.69E-46 |
MS.gene056510 | MS.gene51173 | 0.812691 | 3.73E-51 | -1.69E-46 |
MS.gene056657 | MS.gene51173 | 0.827189 | 1.79E-54 | -1.69E-46 |
MS.gene056692 | MS.gene51173 | 0.802489 | 5.47E-49 | -1.69E-46 |
MS.gene056898 | MS.gene51173 | 0.818553 | 1.85E-52 | -1.69E-46 |
MS.gene058335 | MS.gene51173 | 0.808074 | 3.70E-50 | -1.69E-46 |
MS.gene058419 | MS.gene51173 | 0.809987 | 1.44E-50 | -1.69E-46 |
MS.gene058719 | MS.gene51173 | 0.96857 | 7.26E-129 | -1.69E-46 |
MS.gene059022 | MS.gene51173 | 0.810573 | 1.08E-50 | -1.69E-46 |
MS.gene059677 | MS.gene51173 | 0.844279 | 8.34E-59 | -1.69E-46 |
MS.gene059865 | MS.gene51173 | 0.812129 | 4.95E-51 | -1.69E-46 |
MS.gene060703 | MS.gene51173 | 0.834385 | 3.09E-56 | -1.69E-46 |
MS.gene060762 | MS.gene51173 | 0.810124 | 1.35E-50 | -1.69E-46 |
MS.gene06077 | MS.gene51173 | 0.800596 | 1.34E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51173.t1 | MTR_7g079840 | 99.522 | 418 | 2 | 0 | 1 | 418 | 1 | 418 | 0.0 | 860 |
MS.gene51173.t1 | MTR_7g079840 | 99.510 | 408 | 2 | 0 | 11 | 418 | 1 | 408 | 0.0 | 840 |
MS.gene51173.t1 | MTR_4g119280 | 44.869 | 419 | 172 | 14 | 27 | 395 | 43 | 452 | 4.67e-97 | 300 |
MS.gene51173.t1 | MTR_1g088875 | 48.297 | 323 | 152 | 7 | 9 | 325 | 30 | 343 | 5.35e-92 | 281 |
MS.gene51173.t1 | MTR_1g088875 | 52.632 | 76 | 36 | 0 | 275 | 350 | 91 | 166 | 9.28e-19 | 87.4 |
MS.gene51173.t1 | MTR_1g088875 | 48.297 | 323 | 152 | 7 | 9 | 325 | 30 | 343 | 1.09e-91 | 280 |
MS.gene51173.t1 | MTR_1g088875 | 52.632 | 76 | 36 | 0 | 275 | 350 | 91 | 166 | 9.96e-19 | 87.4 |
MS.gene51173.t1 | MTR_1g088875 | 58.182 | 55 | 21 | 1 | 72 | 126 | 295 | 347 | 3.61e-13 | 70.9 |
MS.gene51173.t1 | MTR_1g088875 | 48.297 | 323 | 152 | 7 | 9 | 325 | 30 | 343 | 1.12e-91 | 281 |
MS.gene51173.t1 | MTR_1g088875 | 52.632 | 76 | 36 | 0 | 275 | 350 | 91 | 166 | 1.03e-18 | 87.4 |
MS.gene51173.t1 | MTR_1g088875 | 59.615 | 52 | 19 | 1 | 72 | 123 | 295 | 344 | 6.72e-13 | 69.7 |
MS.gene51173.t1 | MTR_2g019740 | 42.574 | 404 | 197 | 11 | 8 | 388 | 26 | 417 | 1.88e-91 | 284 |
MS.gene51173.t1 | MTR_5g085200 | 43.175 | 359 | 163 | 12 | 23 | 372 | 40 | 366 | 2.87e-89 | 277 |
MS.gene51173.t1 | MTR_4g119280 | 45.087 | 346 | 135 | 12 | 27 | 326 | 43 | 379 | 1.10e-84 | 263 |
MS.gene51173.t1 | MTR_4g119280 | 46.237 | 93 | 50 | 0 | 275 | 367 | 88 | 180 | 8.94e-21 | 93.6 |
MS.gene51173.t1 | MTR_3g075190 | 37.637 | 364 | 178 | 7 | 4 | 353 | 150 | 478 | 2.55e-74 | 241 |
MS.gene51173.t1 | MTR_3g075190 | 42.697 | 89 | 36 | 2 | 275 | 355 | 171 | 252 | 1.13e-13 | 73.2 |
MS.gene51173.t1 | MTR_4g104260 | 38.172 | 372 | 186 | 12 | 27 | 384 | 231 | 572 | 1.88e-69 | 229 |
MS.gene51173.t1 | MTR_8g446930 | 32.741 | 394 | 188 | 13 | 5 | 350 | 110 | 474 | 3.07e-50 | 177 |
MS.gene51173.t1 | MTR_8g446930 | 35.088 | 171 | 66 | 3 | 28 | 153 | 310 | 480 | 7.47e-26 | 109 |
MS.gene51173.t1 | MTR_8g446930 | 49.367 | 79 | 35 | 2 | 275 | 353 | 190 | 263 | 3.72e-17 | 84.0 |
MS.gene51173.t1 | MTR_8g446930 | 30.914 | 372 | 141 | 11 | 15 | 350 | 33 | 324 | 4.00e-48 | 168 |
MS.gene51173.t1 | MTR_8g446930 | 35.088 | 171 | 66 | 3 | 28 | 153 | 160 | 330 | 2.34e-26 | 109 |
MS.gene51173.t1 | MTR_8g446930 | 49.367 | 79 | 35 | 2 | 275 | 353 | 40 | 113 | 2.96e-17 | 83.2 |
MS.gene51173.t1 | MTR_1g078270 | 75.000 | 44 | 11 | 0 | 15 | 58 | 64 | 107 | 2.19e-17 | 77.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene51173.t1 | AT3G02830 | 61.814 | 419 | 109 | 9 | 8 | 417 | 18 | 394 | 1.27e-177 | 501 |
MS.gene51173.t1 | AT3G02830 | 61.928 | 415 | 107 | 9 | 11 | 416 | 1 | 373 | 7.16e-176 | 496 |
MS.gene51173.t1 | AT5G16540 | 53.472 | 432 | 125 | 11 | 1 | 416 | 1 | 372 | 4.77e-151 | 433 |
MS.gene51173.t1 | AT5G16540 | 54.988 | 411 | 120 | 10 | 11 | 416 | 1 | 351 | 3.71e-149 | 427 |
MS.gene51173.t1 | AT5G16540 | 52.083 | 432 | 124 | 12 | 1 | 416 | 1 | 365 | 2.36e-143 | 413 |
MS.gene51173.t1 | AT5G16540 | 56.113 | 319 | 86 | 7 | 11 | 325 | 1 | 269 | 2.75e-121 | 353 |
MS.gene51173.t1 | AT5G16540 | 52.632 | 76 | 36 | 0 | 275 | 350 | 63 | 138 | 6.69e-21 | 92.4 |
MS.gene51173.t1 | AT5G16540 | 41.053 | 95 | 49 | 2 | 275 | 363 | 18 | 111 | 4.48e-16 | 78.6 |
MS.gene51173.t1 | AT2G47850 | 49.866 | 373 | 161 | 9 | 2 | 366 | 23 | 377 | 7.24e-119 | 354 |
MS.gene51173.t1 | AT2G47850 | 49.866 | 373 | 161 | 9 | 2 | 366 | 23 | 377 | 7.24e-119 | 354 |
MS.gene51173.t1 | AT5G18550 | 45.401 | 337 | 156 | 9 | 27 | 349 | 16 | 338 | 1.15e-96 | 296 |
MS.gene51173.t1 | AT5G18550 | 33.548 | 155 | 66 | 5 | 72 | 192 | 265 | 416 | 2.20e-17 | 84.3 |
MS.gene51173.t1 | AT5G18550 | 45.401 | 337 | 156 | 9 | 27 | 349 | 48 | 370 | 2.16e-96 | 296 |
MS.gene51173.t1 | AT5G18550 | 33.548 | 155 | 66 | 5 | 72 | 192 | 297 | 448 | 2.13e-17 | 84.3 |
MS.gene51173.t1 | AT5G18550 | 45.401 | 337 | 156 | 9 | 27 | 349 | 48 | 370 | 2.62e-96 | 296 |
MS.gene51173.t1 | AT5G18550 | 33.548 | 155 | 66 | 5 | 72 | 192 | 297 | 448 | 2.74e-17 | 84.0 |
MS.gene51173.t1 | AT2G47850 | 45.479 | 365 | 151 | 10 | 8 | 366 | 29 | 351 | 6.17e-96 | 295 |
MS.gene51173.t1 | AT3G06410 | 43.767 | 361 | 166 | 10 | 11 | 349 | 33 | 378 | 1.36e-89 | 279 |
MS.gene51173.t1 | AT5G18550 | 43.027 | 337 | 151 | 9 | 27 | 349 | 48 | 357 | 7.80e-89 | 277 |
MS.gene51173.t1 | AT5G18550 | 30.968 | 155 | 57 | 5 | 72 | 192 | 297 | 435 | 3.98e-13 | 71.2 |
MS.gene51173.t1 | AT1G04990 | 41.618 | 346 | 164 | 7 | 8 | 351 | 25 | 334 | 8.50e-86 | 267 |
MS.gene51173.t1 | AT1G04990 | 41.618 | 346 | 164 | 7 | 8 | 351 | 25 | 334 | 8.50e-86 | 267 |
MS.gene51173.t1 | AT1G04990 | 41.618 | 346 | 164 | 7 | 8 | 351 | 25 | 334 | 8.50e-86 | 267 |
MS.gene51173.t1 | AT3G48440 | 42.816 | 348 | 157 | 11 | 19 | 351 | 99 | 419 | 1.27e-82 | 261 |
MS.gene51173.t1 | AT3G48440 | 34.328 | 134 | 40 | 2 | 265 | 350 | 97 | 230 | 3.61e-16 | 80.5 |
MS.gene51173.t1 | AT1G04990 | 39.595 | 346 | 151 | 8 | 8 | 351 | 25 | 314 | 3.86e-77 | 244 |
MS.gene51173.t1 | AT2G32930 | 35.765 | 425 | 221 | 12 | 8 | 413 | 22 | 413 | 8.19e-76 | 243 |
MS.gene51173.t1 | AT2G32930 | 36.516 | 419 | 214 | 12 | 14 | 413 | 1 | 386 | 2.45e-75 | 241 |
MS.gene51173.t1 | AT2G47850 | 48.302 | 265 | 117 | 8 | 110 | 366 | 3 | 255 | 1.26e-72 | 231 |
MS.gene51173.t1 | AT2G47850 | 57.895 | 76 | 32 | 0 | 72 | 147 | 164 | 239 | 1.44e-25 | 107 |
MS.gene51173.t1 | AT2G47850 | 46.053 | 76 | 40 | 1 | 27 | 101 | 164 | 239 | 1.00e-16 | 81.3 |
MS.gene51173.t1 | AT5G63260 | 39.759 | 332 | 171 | 7 | 27 | 351 | 98 | 407 | 2.45e-71 | 231 |
MS.gene51173.t1 | AT5G63260 | 34.677 | 124 | 34 | 1 | 274 | 350 | 97 | 220 | 1.99e-15 | 78.2 |
MS.gene51173.t1 | AT2G32930 | 35.059 | 425 | 220 | 13 | 8 | 413 | 22 | 409 | 1.16e-70 | 229 |
MS.gene51173.t1 | AT5G63260 | 37.931 | 348 | 171 | 8 | 27 | 351 | 98 | 423 | 3.42e-67 | 221 |
MS.gene51173.t1 | AT1G04990 | 40.580 | 276 | 128 | 6 | 78 | 351 | 12 | 253 | 1.56e-59 | 197 |
MS.gene51173.t1 | AT1G04990 | 28.413 | 271 | 155 | 9 | 38 | 304 | 17 | 252 | 1.48e-19 | 89.4 |
MS.gene51173.t1 | AT3G12680 | 33.428 | 353 | 182 | 10 | 27 | 350 | 171 | 499 | 3.12e-54 | 188 |
MS.gene51173.t1 | AT3G12680 | 34.973 | 183 | 77 | 3 | 13 | 153 | 323 | 505 | 5.44e-30 | 122 |
MS.gene51173.t1 | AT3G12680 | 51.899 | 79 | 35 | 1 | 275 | 353 | 222 | 297 | 2.04e-19 | 90.9 |
MS.gene51173.t1 | AT3G12680 | 39.640 | 111 | 47 | 2 | 5 | 101 | 395 | 499 | 3.37e-19 | 90.1 |
MS.gene51173.t1 | AT3G12680 | 32.222 | 180 | 80 | 5 | 268 | 415 | 258 | 427 | 8.71e-19 | 89.0 |
MS.gene51173.t1 | AT3G12680 | 42.857 | 84 | 39 | 3 | 274 | 350 | 170 | 251 | 3.69e-12 | 68.6 |
MS.gene51173.t1 | AT1G04990 | 38.043 | 276 | 115 | 7 | 78 | 351 | 12 | 233 | 7.23e-51 | 174 |
MS.gene51173.t1 | AT1G48195 | 53.846 | 78 | 36 | 0 | 272 | 349 | 3 | 80 | 1.84e-25 | 99.4 |
MS.gene51173.t1 | AT1G48195 | 48.684 | 76 | 39 | 0 | 71 | 146 | 5 | 80 | 1.13e-18 | 80.5 |
MS.gene51173.t1 | AT1G48195 | 40.000 | 80 | 47 | 1 | 22 | 100 | 1 | 80 | 3.55e-13 | 65.1 |
MS.gene51173.t1 | AT1G29600 | 38.095 | 84 | 39 | 3 | 24 | 106 | 125 | 196 | 2.99e-11 | 64.7 |
MS.gene51173.t1 | AT1G29600 | 38.095 | 84 | 39 | 3 | 24 | 106 | 119 | 190 | 3.25e-11 | 64.3 |
Find 144 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAACTGGTCAATGCAAATT+TGG | 0.130342 | 7.3:+27496220 | MS.gene51173:CDS |
TCTGGCTGCCCTAACCTTTC+TGG | 0.134070 | 7.3:-27488376 | None:intergenic |
AAAACAGGAACTTGCAAATT+TGG | 0.136623 | 7.3:+27495796 | MS.gene51173:CDS |
CGGTATGGCATATGCAAATT+TGG | 0.215054 | 7.3:+27498577 | MS.gene51173:CDS |
GCAACCCCAGCCTTGTCTTT+AGG | 0.238635 | 7.3:-27495841 | None:intergenic |
AAAGACAAGGCTGGGGTTGC+TGG | 0.272337 | 7.3:+27495844 | MS.gene51173:CDS |
GGGGCCTTGCCACCTTGGAC+TGG | 0.285983 | 7.3:-27496395 | None:intergenic |
ACTCCTTGAGGTAGAATTAA+AGG | 0.289469 | 7.3:-27496430 | None:intergenic |
CAAGTACATGCCTGACATTC+TGG | 0.292463 | 7.3:-27488394 | None:intergenic |
AGAACCGGCCTTTGTAGATT+TGG | 0.298865 | 7.3:+27487786 | MS.gene51173:CDS |
CAAGGAGTGGTTTCAGTGCC+TGG | 0.319809 | 7.3:+27496445 | MS.gene51173:CDS |
CCTGATTCCATTGTTTCACT+TGG | 0.338494 | 7.3:-27487717 | None:intergenic |
CTGGCTGCCCTAACCTTTCT+GGG | 0.342700 | 7.3:-27488375 | None:intergenic |
TTCATGTAGAATTGGCATTC+AGG | 0.344518 | 7.3:-27497323 | None:intergenic |
TTCATTATTCTAGGGTCAAA+TGG | 0.349387 | 7.3:+27497124 | MS.gene51173:intron |
CCATCCTCAACCAAGTAATA+TGG | 0.367721 | 7.3:+27496261 | MS.gene51173:CDS |
CCCCAGTCTTCATGTAGAAT+TGG | 0.370124 | 7.3:-27497331 | None:intergenic |
GATGGTCAAACTTGCAGCTT+GGG | 0.376214 | 7.3:-27498600 | None:intergenic |
GGGCCTTGCCACCTTGGACT+GGG | 0.379660 | 7.3:-27496394 | None:intergenic |
AGGTGATGCAGATACATTAT+AGG | 0.382033 | 7.3:-27498638 | None:intergenic |
GAACTGGTCAATGCAAATTT+GGG | 0.387377 | 7.3:+27496221 | MS.gene51173:CDS |
TGTGCTTATTATTTAAGAAC+TGG | 0.391344 | 7.3:+27496205 | MS.gene51173:CDS |
GTATATTCTCAATACCGTTC+TGG | 0.396199 | 7.3:+27497236 | MS.gene51173:CDS |
GACTGGACAGTAGGATAAAC+AGG | 0.398708 | 7.3:-27496304 | None:intergenic |
GGTTTAATCATCCTCCTAAC+AGG | 0.403742 | 7.3:+27487820 | MS.gene51173:CDS |
GTTCGTACCAGCTTCCTGTT+AGG | 0.404770 | 7.3:-27487834 | None:intergenic |
AGGGGACTCAAAACACAATC+AGG | 0.404981 | 7.3:-27497413 | None:intergenic |
AAGACTGGGGATTGCAAGTT+CGG | 0.406993 | 7.3:+27497344 | MS.gene51173:CDS |
TTACAGTACTATCTGAAAAC+AGG | 0.407139 | 7.3:+27495781 | MS.gene51173:intron |
AATTGGCATTCAGGCTGATC+AGG | 0.416142 | 7.3:-27497314 | None:intergenic |
CACTTTGTGTATTCTATTCG+CGG | 0.422525 | 7.3:+27498557 | MS.gene51173:CDS |
GAGACTAGACCGAATCCTTC+CGG | 0.432361 | 7.3:+27498781 | MS.gene51173:CDS |
TCAGGCTGATCAGGTCTCTC+TGG | 0.434727 | 7.3:-27497305 | None:intergenic |
ATCATCCTAAAGACAAGGCT+GGG | 0.436765 | 7.3:+27495836 | MS.gene51173:CDS |
ATGCGGCAGGAATTACAAAT+TGG | 0.438347 | 7.3:+27496353 | MS.gene51173:CDS |
CTTGAGGGGCCTTGCCACCT+TGG | 0.438502 | 7.3:-27496400 | None:intergenic |
AATGGAATCAGGACCGTATC+CGG | 0.442898 | 7.3:+27487728 | MS.gene51173:CDS |
TGTGTATTCTATTCGCGGTA+TGG | 0.447990 | 7.3:+27498562 | MS.gene51173:CDS |
GTCGCAGGACGGCGTCTGCT+AGG | 0.454015 | 7.3:+27498670 | MS.gene51173:CDS |
GTTAGGGCAGCCAGAATGTC+AGG | 0.459032 | 7.3:+27488384 | MS.gene51173:CDS |
TGCAAAGCATAGAATCCTAC+TGG | 0.461939 | 7.3:-27497266 | None:intergenic |
GGCGAGTTCCCAGAAAGGTT+AGG | 0.462182 | 7.3:+27488367 | MS.gene51173:CDS |
ATTGGAAGTACCATATTACT+TGG | 0.463756 | 7.3:-27496271 | None:intergenic |
TGCCAATTCTACATGAAGAC+TGG | 0.464264 | 7.3:+27497329 | MS.gene51173:CDS |
TCATCATCACCGGAAGGATT+CGG | 0.466357 | 7.3:-27498790 | None:intergenic |
CCAAGTGAAACAATGGAATC+AGG | 0.466799 | 7.3:+27487717 | MS.gene51173:CDS |
TGTTCATATTACATAAGAAC+CGG | 0.466818 | 7.3:+27487771 | MS.gene51173:CDS |
CTTATGTAATATGAACAATC+TGG | 0.467160 | 7.3:-27487765 | None:intergenic |
TCATTTCTCATTGTTTGTTG+TGG | 0.469765 | 7.3:-27497158 | None:intergenic |
TCATTATTCTAGGGTCAAAT+GGG | 0.471117 | 7.3:+27497125 | MS.gene51173:intron |
GCGAGTTCCCAGAAAGGTTA+GGG | 0.476077 | 7.3:+27488368 | MS.gene51173:CDS |
TATGAACAATCTGGTTCTCC+AGG | 0.476295 | 7.3:-27487756 | None:intergenic |
TCTCCAGGATGCTCCGGATA+CGG | 0.476462 | 7.3:-27487741 | None:intergenic |
TCTGATAATGAAAGCCTCCT+TGG | 0.480995 | 7.3:-27498760 | None:intergenic |
CCAGAAAATGCAGGACTCCC+AGG | 0.485002 | 7.3:+27497212 | MS.gene51173:CDS |
ATTAAAGGTGCATAACTTGA+GGG | 0.486909 | 7.3:-27496415 | None:intergenic |
CATCATCCTAAAGACAAGGC+TGG | 0.496258 | 7.3:+27495835 | MS.gene51173:CDS |
AAGGAGTGGTTTCAGTGCCT+GGG | 0.496753 | 7.3:+27496446 | MS.gene51173:CDS |
GCAAATTTGGAGCCACATGC+AGG | 0.499420 | 7.3:+27495809 | MS.gene51173:CDS |
ATGAGAAATGATCAAACCTA+TGG | 0.501705 | 7.3:+27497170 | MS.gene51173:CDS |
GGATGGTCAAACTTGCAGCT+TGG | 0.504043 | 7.3:-27498601 | None:intergenic |
CGGTATTGAGAATATACCCC+TGG | 0.505547 | 7.3:-27497230 | None:intergenic |
GACTGCTGACCTGCTGTAGT+TGG | 0.505631 | 7.3:-27496328 | None:intergenic |
TAAACAGGAGAACCTCTCAT+TGG | 0.506558 | 7.3:-27496289 | None:intergenic |
TCTGGTTCTCCAGGATGCTC+CGG | 0.509312 | 7.3:-27487747 | None:intergenic |
TGGATAGCCTAAAATATTCA+AGG | 0.511388 | 7.3:-27495875 | None:intergenic |
CGTCTGCTAGGTTCTTCATC+AGG | 0.511541 | 7.3:+27498682 | MS.gene51173:CDS |
GGACCGTATCCGGAGCATCC+TGG | 0.519002 | 7.3:+27487738 | MS.gene51173:CDS |
AGGATTCTATGCTTTGCAAA+GGG | 0.522548 | 7.3:+27497271 | MS.gene51173:CDS |
TCAGAAGGACTTGTTGAGTC+GGG | 0.523918 | 7.3:+27498727 | MS.gene51173:CDS |
TGCTCCAAATCTACAAAGGC+CGG | 0.524252 | 7.3:-27487790 | None:intergenic |
AGTACCATATTACTTGGTTG+AGG | 0.526229 | 7.3:-27496265 | None:intergenic |
ATTGCCACTGCACGGATGAA+AGG | 0.537603 | 7.3:+27488346 | MS.gene51173:CDS |
CAGGACGCAAAGGAAGGCCA+AGG | 0.538208 | 7.3:-27497433 | None:intergenic |
CCATATTACTTGGTTGAGGA+TGG | 0.539028 | 7.3:-27496261 | None:intergenic |
AAAAGAGAAGAGAACCTTGA+GGG | 0.541426 | 7.3:-27486857 | None:intergenic |
GCCAATTCTACATGAAGACT+GGG | 0.541639 | 7.3:+27497330 | MS.gene51173:CDS |
TGCAAGTTTGACCATCCAAT+GGG | 0.542643 | 7.3:+27498607 | MS.gene51173:CDS |
CGTACCAGCTTCCTGTTAGG+AGG | 0.546788 | 7.3:-27487831 | None:intergenic |
AGGTGAAGATTCCCATTGGA+TGG | 0.548300 | 7.3:-27498618 | None:intergenic |
GACCTGCTGTAGTTGGAGAC+TGG | 0.551761 | 7.3:-27496321 | None:intergenic |
CGTTCTGGCTCTGTTCCAGT+AGG | 0.552611 | 7.3:+27497251 | MS.gene51173:CDS |
ATCATCAATGTCATCATCAC+CGG | 0.554108 | 7.3:-27498800 | None:intergenic |
GGTCAGCAGTCATATGCGGC+AGG | 0.561665 | 7.3:+27496340 | MS.gene51173:CDS |
CAGAAAATGCAGGACTCCCA+GGG | 0.561675 | 7.3:+27497213 | MS.gene51173:CDS |
TCATCCTCCTAACAGGAAGC+TGG | 0.561961 | 7.3:+27487827 | MS.gene51173:CDS |
ATCAGAAGGACTTGTTGAGT+CGG | 0.563006 | 7.3:+27498726 | MS.gene51173:CDS |
TAGGATTCTATGCTTTGCAA+AGG | 0.563647 | 7.3:+27497270 | MS.gene51173:CDS |
GCATTAAGTTTATCATCAGA+AGG | 0.566420 | 7.3:+27498712 | MS.gene51173:CDS |
CGTCCTGCGACTTCAGCTAA+AGG | 0.566760 | 7.3:-27498658 | None:intergenic |
CTTGAGGCCAAGTGAAACAA+TGG | 0.571072 | 7.3:+27487710 | MS.gene51173:CDS |
CTCAAAACACAATCAGGGGC+AGG | 0.571149 | 7.3:-27497407 | None:intergenic |
TTTAATTCTACCTCAAGGAG+TGG | 0.571343 | 7.3:+27496432 | MS.gene51173:CDS |
CGCGAATAGAATACACAAAG+TGG | 0.573840 | 7.3:-27498556 | None:intergenic |
GCACCTTTAATTCTACCTCA+AGG | 0.574609 | 7.3:+27496427 | MS.gene51173:CDS |
CTGCAAGTTTGACCATCCAA+TGG | 0.575545 | 7.3:+27498606 | MS.gene51173:CDS |
GTCCAGTCTCCAACTACAGC+AGG | 0.575929 | 7.3:+27496319 | MS.gene51173:CDS |
GAATCGTCCTCTCACGTGGA+TGG | 0.576252 | 7.3:-27497385 | None:intergenic |
AATTAAAGGTGCATAACTTG+AGG | 0.578502 | 7.3:-27496416 | None:intergenic |
GGGGACTCAAAACACAATCA+GGG | 0.586867 | 7.3:-27497412 | None:intergenic |
TTATAGGTGAAGATTCCCAT+TGG | 0.587312 | 7.3:-27498622 | None:intergenic |
ATTCCCAGTCCAAGGTGGCA+AGG | 0.587489 | 7.3:+27496391 | MS.gene51173:CDS |
GAGAAGAGAACCTTGAGGGA+TGG | 0.594361 | 7.3:-27486853 | None:intergenic |
CAAGGTGATCCAGAAAATGC+AGG | 0.595566 | 7.3:+27497203 | MS.gene51173:CDS |
TCACCTTTAGCTGAAGTCGC+AGG | 0.596807 | 7.3:+27498655 | MS.gene51173:CDS |
GTCAGGCTATTGCCACTGCA+CGG | 0.597527 | 7.3:+27488338 | MS.gene51173:intron |
AGGACGCAAAGGAAGGCCAA+GGG | 0.598969 | 7.3:-27497432 | None:intergenic |
GTAGTTGGAGACTGGACAGT+AGG | 0.599936 | 7.3:-27496313 | None:intergenic |
CATCATATATTCCCAGTCCA+AGG | 0.605376 | 7.3:+27496383 | MS.gene51173:CDS |
AACTCACAGGACGCAAAGGA+AGG | 0.607839 | 7.3:-27497439 | None:intergenic |
CTCGCCTTTCATCCGTGCAG+TGG | 0.608806 | 7.3:-27488350 | None:intergenic |
CAATGTGGCAAATGAGCTTG+AGG | 0.610902 | 7.3:+27487694 | MS.gene51173:CDS |
GAATACGATGCCATCCCTCA+AGG | 0.613701 | 7.3:+27486843 | MS.gene51173:CDS |
TGAAAGGCGAGTTCCCAGAA+AGG | 0.615643 | 7.3:+27488362 | MS.gene51173:CDS |
GCAGGAATCGTCCTCTCACG+TGG | 0.617223 | 7.3:-27497389 | None:intergenic |
ACCTTGGTGAGAAGTTCCAT+AGG | 0.618037 | 7.3:-27497186 | None:intergenic |
TGATGATGACATTGATGATG+AGG | 0.621578 | 7.3:+27498804 | MS.gene51173:CDS |
TATCAACTCACAGGACGCAA+AGG | 0.625938 | 7.3:-27497443 | None:intergenic |
GAGTGGTTTCAGTGCCTGGG+TGG | 0.634998 | 7.3:+27496449 | MS.gene51173:CDS |
AGTCGGGCTCAGTAAAGCCA+AGG | 0.638264 | 7.3:+27498743 | MS.gene51173:CDS |
CTACTGGAACAGAGCCAGAA+CGG | 0.644056 | 7.3:-27497250 | None:intergenic |
TTGGTATTTCAGAGGCAATG+TGG | 0.648210 | 7.3:+27487679 | MS.gene51173:intron |
AGCAGGTCAGCAGTCATATG+CGG | 0.648949 | 7.3:+27496336 | MS.gene51173:CDS |
CTTTAGCTGAAGTCGCAGGA+CGG | 0.650746 | 7.3:+27498659 | MS.gene51173:CDS |
GGCACTGAAACCACTCCTTG+AGG | 0.654184 | 7.3:-27496442 | None:intergenic |
GTAGATTTGGAGCAACATGT+CGG | 0.656899 | 7.3:+27487799 | MS.gene51173:CDS |
TCATCCTAAAGACAAGGCTG+GGG | 0.657086 | 7.3:+27495837 | MS.gene51173:CDS |
AATATGGTACTTCCAATGAG+AGG | 0.663744 | 7.3:+27496277 | MS.gene51173:CDS |
TTAAAGGTGCATAACTTGAG+GGG | 0.664735 | 7.3:-27496414 | None:intergenic |
TCAATGTCATCATCACCGGA+AGG | 0.666162 | 7.3:-27498796 | None:intergenic |
GGGACTCAAAACACAATCAG+GGG | 0.668670 | 7.3:-27497411 | None:intergenic |
TGAATACTAACTGGGCGGAG+TGG | 0.668928 | 7.3:-27495895 | None:intergenic |
GGTATTGAGAATATACCCCT+GGG | 0.672817 | 7.3:-27497229 | None:intergenic |
GGACGCAAAGGAAGGCCAAG+GGG | 0.673705 | 7.3:-27497431 | None:intergenic |
CATATATTCCCAGTCCAAGG+TGG | 0.674314 | 7.3:+27496386 | MS.gene51173:CDS |
ACCTATGGAACTTCTCACCA+AGG | 0.676965 | 7.3:+27497185 | MS.gene51173:CDS |
ATGTTGCTCCAAATCTACAA+AGG | 0.680968 | 7.3:-27487794 | None:intergenic |
GATGATGACATTGATGATGA+GGG | 0.686486 | 7.3:+27498805 | MS.gene51173:CDS |
GTTTCATCATCCTAAAGACA+AGG | 0.693217 | 7.3:+27495831 | MS.gene51173:CDS |
CGGGCTCAGTAAAGCCAAGG+AGG | 0.694995 | 7.3:+27498746 | MS.gene51173:CDS |
ACATTGTATGTACTCCACCC+AGG | 0.709130 | 7.3:-27496463 | None:intergenic |
CCAATTCTACATGAAGACTG+GGG | 0.719635 | 7.3:+27497331 | MS.gene51173:CDS |
AGGATGATGAAACCTGCATG+TGG | 0.722276 | 7.3:-27495821 | None:intergenic |
AGAAAATGCAGGACTCCCAG+GGG | 0.722646 | 7.3:+27497214 | MS.gene51173:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 27486840 | 27498831 | 27486840 | ID=MS.gene51173 |
chr7.3 | mRNA | 27486840 | 27498831 | 27486840 | ID=MS.gene51173.t1;Parent=MS.gene51173 |
chr7.3 | exon | 27486840 | 27486864 | 27486840 | ID=MS.gene51173.t1.exon1;Parent=MS.gene51173.t1 |
chr7.3 | CDS | 27486840 | 27486864 | 27486840 | ID=cds.MS.gene51173.t1;Parent=MS.gene51173.t1 |
chr7.3 | exon | 27487691 | 27487848 | 27487691 | ID=MS.gene51173.t1.exon2;Parent=MS.gene51173.t1 |
chr7.3 | CDS | 27487691 | 27487848 | 27487691 | ID=cds.MS.gene51173.t1;Parent=MS.gene51173.t1 |
chr7.3 | exon | 27488343 | 27488405 | 27488343 | ID=MS.gene51173.t1.exon3;Parent=MS.gene51173.t1 |
chr7.3 | CDS | 27488343 | 27488405 | 27488343 | ID=cds.MS.gene51173.t1;Parent=MS.gene51173.t1 |
chr7.3 | exon | 27495787 | 27495906 | 27495787 | ID=MS.gene51173.t1.exon4;Parent=MS.gene51173.t1 |
chr7.3 | CDS | 27495787 | 27495906 | 27495787 | ID=cds.MS.gene51173.t1;Parent=MS.gene51173.t1 |
chr7.3 | exon | 27496193 | 27496483 | 27496193 | ID=MS.gene51173.t1.exon5;Parent=MS.gene51173.t1 |
chr7.3 | CDS | 27496193 | 27496483 | 27496193 | ID=cds.MS.gene51173.t1;Parent=MS.gene51173.t1 |
chr7.3 | exon | 27497137 | 27497454 | 27497137 | ID=MS.gene51173.t1.exon6;Parent=MS.gene51173.t1 |
chr7.3 | CDS | 27497137 | 27497454 | 27497137 | ID=cds.MS.gene51173.t1;Parent=MS.gene51173.t1 |
chr7.3 | exon | 27498550 | 27498831 | 27498550 | ID=MS.gene51173.t1.exon7;Parent=MS.gene51173.t1 |
chr7.3 | CDS | 27498550 | 27498831 | 27498550 | ID=cds.MS.gene51173.t1;Parent=MS.gene51173.t1 |
Gene Sequence |
Protein sequence |