Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51230.t1 | XP_003624084.2 | 99.1 | 350 | 3 | 0 | 9 | 358 | 114 | 463 | 6.30E-201 | 709.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51230.t1 | P18485 | 69.8 | 358 | 101 | 4 | 9 | 359 | 114 | 471 | 2.2e-146 | 520.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51230.t1 | G7L6P6 | 99.1 | 350 | 3 | 0 | 9 | 358 | 9 | 358 | 4.5e-201 | 709.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058674 | MS.gene51230 | 0.975132 | 2.14E-139 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene63500 | MS.gene51230 | PPI |
| MS.gene030294 | MS.gene51230 | PPI |
| MS.gene51230 | MS.gene049022 | PPI |
| MS.gene51230 | MS.gene55883 | PPI |
| MS.gene51230 | MS.gene031398 | PPI |
| MS.gene51230 | MS.gene06177 | PPI |
| MS.gene51230 | MS.gene75059 | PPI |
| MS.gene064035 | MS.gene51230 | PPI |
| MS.gene51230 | MS.gene06176 | PPI |
| MS.gene51230 | MS.gene065184 | PPI |
| MS.gene51230 | MS.gene62175 | PPI |
| MS.gene51230 | MS.gene049021 | PPI |
| MS.gene51230 | MS.gene66343 | PPI |
| MS.gene51230 | MS.gene059852 | PPI |
| MS.gene51230 | MS.gene20160 | PPI |
| MS.gene51230 | MS.gene55882 | PPI |
| MS.gene51230 | MS.gene20161 | PPI |
| MS.gene51230 | MS.gene63294 | PPI |
| MS.gene008145 | MS.gene51230 | PPI |
| MS.gene66342 | MS.gene51230 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51230.t1 | MTR_7g079080 | 98.922 | 371 | 4 | 0 | 9 | 379 | 9 | 379 | 0.0 | 764 |
| MS.gene51230.t1 | MTR_7g079080 | 98.922 | 371 | 4 | 0 | 9 | 379 | 114 | 484 | 0.0 | 763 |
| MS.gene51230.t1 | MTR_8g028600 | 77.358 | 371 | 80 | 3 | 9 | 379 | 114 | 480 | 0.0 | 592 |
| MS.gene51230.t1 | MTR_8g098930 | 64.721 | 377 | 122 | 3 | 9 | 379 | 115 | 486 | 0.0 | 522 |
| MS.gene51230.t1 | MTR_6g091760 | 56.790 | 324 | 140 | 0 | 9 | 332 | 116 | 439 | 4.20e-142 | 411 |
| MS.gene51230.t1 | MTR_8g101750 | 55.864 | 324 | 143 | 0 | 11 | 334 | 110 | 433 | 9.30e-140 | 405 |
| MS.gene51230.t1 | MTR_4g097540 | 53.963 | 328 | 142 | 3 | 9 | 327 | 107 | 434 | 3.11e-137 | 400 |
| MS.gene51230.t1 | MTR_3g103550 | 53.846 | 325 | 145 | 2 | 8 | 328 | 105 | 428 | 3.94e-137 | 400 |
| MS.gene51230.t1 | MTR_5g015020 | 49.722 | 360 | 171 | 4 | 9 | 360 | 107 | 464 | 1.23e-134 | 393 |
| MS.gene51230.t1 | MTR_8g101820 | 50.765 | 327 | 142 | 2 | 11 | 334 | 110 | 420 | 1.00e-121 | 358 |
| MS.gene51230.t1 | MTR_6g463260 | 42.320 | 319 | 183 | 1 | 9 | 327 | 208 | 525 | 2.84e-102 | 312 |
| MS.gene51230.t1 | MTR_5g011400 | 37.460 | 315 | 196 | 1 | 9 | 323 | 175 | 488 | 9.08e-85 | 266 |
| MS.gene51230.t1 | MTR_8g021970 | 42.623 | 122 | 35 | 3 | 127 | 248 | 11 | 97 | 2.53e-19 | 82.8 |
| MS.gene51230.t1 | MTR_5g033230 | 23.962 | 313 | 211 | 12 | 12 | 300 | 129 | 438 | 1.32e-17 | 84.3 |
| MS.gene51230.t1 | MTR_5g033230 | 23.962 | 313 | 211 | 12 | 12 | 300 | 129 | 438 | 1.60e-17 | 84.3 |
| MS.gene51230.t1 | MTR_8g023140 | 23.054 | 334 | 231 | 11 | 16 | 326 | 184 | 514 | 1.31e-15 | 78.6 |
| MS.gene51230.t1 | MTR_7g106830 | 20.958 | 334 | 240 | 10 | 9 | 333 | 153 | 471 | 2.29e-15 | 77.8 |
| MS.gene51230.t1 | MTR_8g091280 | 24.497 | 298 | 199 | 10 | 11 | 297 | 157 | 439 | 1.19e-14 | 75.5 |
| MS.gene51230.t1 | MTR_3g072680 | 24.062 | 320 | 212 | 13 | 12 | 324 | 102 | 397 | 2.42e-12 | 68.2 |
| MS.gene51230.t1 | MTR_3g072670 | 22.069 | 290 | 197 | 8 | 12 | 296 | 145 | 410 | 1.19e-11 | 66.2 |
| MS.gene51230.t1 | MTR_4g011820 | 23.344 | 317 | 209 | 12 | 16 | 324 | 92 | 382 | 2.00e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51230.t1 | AT3G61510 | 64.550 | 378 | 112 | 3 | 9 | 370 | 114 | 485 | 1.46e-178 | 505 |
| MS.gene51230.t1 | AT1G01480 | 62.205 | 381 | 123 | 5 | 9 | 370 | 9 | 387 | 2.70e-170 | 481 |
| MS.gene51230.t1 | AT1G01480 | 62.205 | 381 | 123 | 5 | 9 | 370 | 115 | 493 | 4.79e-168 | 479 |
| MS.gene51230.t1 | AT4G11280 | 60.870 | 368 | 133 | 2 | 1 | 357 | 110 | 477 | 1.79e-164 | 470 |
| MS.gene51230.t1 | AT4G08040 | 55.828 | 326 | 144 | 0 | 9 | 334 | 105 | 430 | 1.45e-141 | 410 |
| MS.gene51230.t1 | AT4G37770 | 56.481 | 324 | 138 | 1 | 9 | 329 | 107 | 430 | 3.46e-140 | 407 |
| MS.gene51230.t1 | AT4G26200 | 57.231 | 325 | 138 | 1 | 9 | 332 | 122 | 446 | 5.46e-136 | 395 |
| MS.gene51230.t1 | AT2G22810 | 50.949 | 369 | 158 | 4 | 9 | 356 | 107 | 473 | 5.99e-134 | 391 |
| MS.gene51230.t1 | AT5G65800 | 52.568 | 331 | 154 | 2 | 9 | 336 | 107 | 437 | 7.02e-129 | 379 |
| MS.gene51230.t1 | AT3G49700 | 53.012 | 332 | 151 | 2 | 9 | 336 | 107 | 437 | 5.78e-128 | 376 |
| MS.gene51230.t1 | AT5G51690 | 42.089 | 316 | 182 | 1 | 9 | 324 | 50 | 364 | 5.14e-98 | 296 |
| MS.gene51230.t1 | AT5G51690 | 42.089 | 316 | 182 | 1 | 9 | 324 | 173 | 487 | 3.23e-96 | 296 |
| MS.gene51230.t1 | AT1G62960 | 39.117 | 317 | 192 | 1 | 9 | 324 | 231 | 547 | 4.12e-90 | 282 |
| MS.gene51230.t1 | AT1G23310 | 25.723 | 311 | 208 | 13 | 12 | 300 | 129 | 438 | 3.05e-18 | 86.3 |
| MS.gene51230.t1 | AT1G23310 | 25.723 | 311 | 208 | 13 | 12 | 300 | 129 | 438 | 4.04e-18 | 86.3 |
| MS.gene51230.t1 | AT1G72330 | 23.964 | 338 | 231 | 13 | 12 | 326 | 196 | 530 | 1.54e-17 | 84.7 |
| MS.gene51230.t1 | AT1G70580 | 24.281 | 313 | 210 | 12 | 12 | 300 | 129 | 438 | 3.17e-17 | 83.6 |
| MS.gene51230.t1 | AT1G70580 | 24.281 | 313 | 210 | 12 | 12 | 300 | 129 | 438 | 3.17e-17 | 83.6 |
| MS.gene51230.t1 | AT1G70580 | 24.281 | 313 | 210 | 12 | 12 | 300 | 129 | 438 | 3.17e-17 | 83.6 |
| MS.gene51230.t1 | AT1G70580 | 24.281 | 313 | 210 | 12 | 12 | 300 | 129 | 438 | 3.17e-17 | 83.6 |
| MS.gene51230.t1 | AT1G17290 | 23.304 | 339 | 232 | 11 | 12 | 326 | 199 | 533 | 1.03e-16 | 82.0 |
| MS.gene51230.t1 | AT1G72330 | 22.792 | 351 | 232 | 13 | 12 | 326 | 196 | 543 | 2.18e-15 | 78.2 |
| MS.gene51230.t1 | AT1G72330 | 26.667 | 210 | 147 | 6 | 12 | 215 | 196 | 404 | 3.70e-15 | 77.0 |
| MS.gene51230.t1 | AT2G22250 | 24.695 | 328 | 216 | 12 | 9 | 324 | 155 | 463 | 9.09e-15 | 75.9 |
| MS.gene51230.t1 | AT2G22250 | 24.695 | 328 | 216 | 12 | 9 | 324 | 155 | 463 | 9.09e-15 | 75.9 |
| MS.gene51230.t1 | AT2G22250 | 24.695 | 328 | 216 | 12 | 9 | 324 | 108 | 416 | 9.21e-15 | 75.9 |
| MS.gene51230.t1 | AT1G77670 | 23.988 | 321 | 211 | 12 | 12 | 324 | 138 | 433 | 2.84e-13 | 71.2 |
| MS.gene51230.t1 | AT4G23600 | 23.599 | 339 | 231 | 12 | 10 | 339 | 97 | 416 | 2.47e-12 | 68.2 |
| MS.gene51230.t1 | AT4G23600 | 23.867 | 331 | 224 | 12 | 18 | 339 | 1 | 312 | 1.06e-11 | 65.9 |
| MS.gene51230.t1 | AT1G80360 | 23.364 | 321 | 205 | 11 | 15 | 324 | 91 | 381 | 1.11e-11 | 66.2 |
| MS.gene51230.t1 | AT1G80360 | 23.364 | 321 | 205 | 11 | 15 | 324 | 91 | 381 | 1.11e-11 | 66.2 |
| MS.gene51230.t1 | AT1G80360 | 23.364 | 321 | 205 | 11 | 15 | 324 | 91 | 381 | 1.11e-11 | 66.2 |
| MS.gene51230.t1 | AT1G80360 | 23.364 | 321 | 205 | 11 | 15 | 324 | 91 | 381 | 1.11e-11 | 66.2 |
| MS.gene51230.t1 | AT2G24850 | 21.994 | 341 | 225 | 15 | 5 | 328 | 105 | 421 | 1.25e-11 | 66.2 |
| MS.gene51230.t1 | AT5G36160 | 20.482 | 332 | 241 | 10 | 10 | 334 | 104 | 419 | 9.25e-11 | 63.5 |
Find 59 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTACATTTCTGAATTC+TGG | 0.191177 | 7.3:-28119879 | None:intergenic |
| GTTACATACGCTGGATAATA+AGG | 0.224388 | 7.3:-28120160 | None:intergenic |
| GAATTTGAGGGGTTTGTTAA+AGG | 0.236166 | 7.3:+28122850 | MS.gene51230:CDS |
| GTAATGCAGGGCTATTCTTT+TGG | 0.267363 | 7.3:+28122825 | MS.gene51230:CDS |
| TTTGTTAATGGCAGAGAAAA+AGG | 0.274498 | 7.3:+28123043 | MS.gene51230:CDS |
| CATATTTGTGGACAAATTCT+TGG | 0.291943 | 7.3:+28122721 | MS.gene51230:CDS |
| GGTATGTGATGAAATTTATT+CGG | 0.293276 | 7.3:+28122454 | MS.gene51230:CDS |
| AGAATTAGAGCATTTGTTAA+TGG | 0.310372 | 7.3:+28123031 | MS.gene51230:CDS |
| GCTTAATGTTTCGCCGGGTT+CGG | 0.325824 | 7.3:+28122928 | MS.gene51230:CDS |
| GTATGTGATGAAATTTATTC+GGG | 0.326595 | 7.3:+28122455 | MS.gene51230:CDS |
| TCAAAAGACATGGGTCTTCC+AGG | 0.338081 | 7.3:+28122575 | MS.gene51230:CDS |
| GTTGTTCCTAAAGGGTTTGA+TGG | 0.349487 | 7.3:-28122371 | None:intergenic |
| TTTCTAATGTTGTTCCTAAA+GGG | 0.375515 | 7.3:-28122379 | None:intergenic |
| CGCTGAAGTTATTCAAGAAA+TGG | 0.376693 | 7.3:+28122511 | MS.gene51230:CDS |
| ACAAATCCATCAAACCCTTT+AGG | 0.383368 | 7.3:+28122365 | MS.gene51230:CDS |
| TTGATGAGTGGTGGAGCAAC+AGG | 0.425517 | 7.3:+28120076 | MS.gene51230:CDS |
| CGTGATTTGTGTTGGAGAAC+CGG | 0.443119 | 7.3:+28122221 | MS.gene51230:CDS |
| CAATGAAAACAACATCCATT+TGG | 0.444138 | 7.3:+28122433 | MS.gene51230:CDS |
| AAGAATAGCCCTGCATTACT+TGG | 0.453146 | 7.3:-28122821 | None:intergenic |
| TTAAAGGAGAAAACATTTGA+AGG | 0.453549 | 7.3:+28122866 | MS.gene51230:CDS |
| TTGAAGGTGAAATGAAACTT+TGG | 0.460869 | 7.3:+28122882 | MS.gene51230:CDS |
| CTCCACCACTCATCAATATA+CGG | 0.471980 | 7.3:-28120069 | None:intergenic |
| TCAGCGACACTTACGTATGT+TGG | 0.472358 | 7.3:-28122494 | None:intergenic |
| ACTTGCTTACCAAGTAATGC+AGG | 0.478285 | 7.3:+28122812 | MS.gene51230:CDS |
| AAATTTCATCACATACCAAA+TGG | 0.490306 | 7.3:-28122448 | None:intergenic |
| GCTTTCGGATGACATATTTG+TGG | 0.493940 | 7.3:+28122709 | MS.gene51230:CDS |
| GAAGAAAACATCAATGTGAA+AGG | 0.496499 | 7.3:+28122332 | MS.gene51230:CDS |
| AGAATGTTATGTCTCCTCAT+AGG | 0.509549 | 7.3:+28123134 | MS.gene51230:CDS |
| TTAATTGCTCTGAGCCTGGT+TGG | 0.510000 | 7.3:+28122954 | MS.gene51230:CDS |
| TTTGAGCTATGACATTGGAC+AGG | 0.528614 | 7.3:-28122257 | None:intergenic |
| AAGAAAACATCAATGTGAAA+GGG | 0.533670 | 7.3:+28122333 | MS.gene51230:CDS |
| AATTGTTTGAGCTATGACAT+TGG | 0.538692 | 7.3:-28122262 | None:intergenic |
| TTACATACGCTGGATAATAA+GGG | 0.542969 | 7.3:-28120159 | None:intergenic |
| CCACTCATCAATATACGGTC+AGG | 0.543840 | 7.3:-28120064 | None:intergenic |
| CTATAGTTTATCAAAAGACA+TGG | 0.547419 | 7.3:+28122565 | MS.gene51230:CDS |
| AGTAAAGCTTAATGTTTCGC+CGG | 0.558099 | 7.3:+28122922 | MS.gene51230:CDS |
| GTAAAGCTTAATGTTTCGCC+GGG | 0.558703 | 7.3:+28122923 | MS.gene51230:CDS |
| GTATGTTGGATTGTCGAAAA+CGG | 0.568056 | 7.3:-28122480 | None:intergenic |
| GATTTGTACGTGATTTGTGT+TGG | 0.568934 | 7.3:+28122213 | MS.gene51230:intron |
| ACCAAACCGACTCTAAAACC+TGG | 0.573112 | 7.3:-28122593 | None:intergenic |
| GCTCGAACAAGTGGTGAATG+AGG | 0.578297 | 7.3:-28123178 | None:intergenic |
| CTTGCTTACCAAGTAATGCA+GGG | 0.594284 | 7.3:+28122813 | MS.gene51230:CDS |
| AATTAAGTAGCTCGAACAAG+TGG | 0.599852 | 7.3:-28123187 | None:intergenic |
| GAATGAGGAGACATCCTATG+AGG | 0.601031 | 7.3:-28123148 | None:intergenic |
| GAGCAATTAAAAGCCGAACC+CGG | 0.608611 | 7.3:-28122941 | None:intergenic |
| ACAAGTGGTGAATGAGGCAT+TGG | 0.610116 | 7.3:-28123172 | None:intergenic |
| GAATGAGGCATTGGTGAATG+AGG | 0.611463 | 7.3:-28123163 | None:intergenic |
| AAACAGTTGAGATTGCATTG+AGG | 0.613976 | 7.3:+28123008 | MS.gene51230:CDS |
| AAACAGTTGAAATCAAACGT+TGG | 0.627989 | 7.3:+28123068 | MS.gene51230:CDS |
| GTTCAAGAAGATTAAGAGAG+CGG | 0.631111 | 7.3:+28122750 | MS.gene51230:CDS |
| TACGCTGGATAATAAGGGCT+AGG | 0.635604 | 7.3:-28120154 | None:intergenic |
| GACCGTATATTGATGAGTGG+TGG | 0.638618 | 7.3:+28120067 | MS.gene51230:CDS |
| GACAGGAATTAGTTGCACAC+CGG | 0.645023 | 7.3:-28122240 | None:intergenic |
| TATAGTTTATCAAAAGACAT+GGG | 0.672710 | 7.3:+28122566 | MS.gene51230:CDS |
| TATGTGATGAAATTTATTCG+GGG | 0.689865 | 7.3:+28122456 | MS.gene51230:CDS |
| AAACAAACTCTATACCAACC+AGG | 0.691655 | 7.3:-28122968 | None:intergenic |
| AACGATGAAGTTGTGAACTG+CGG | 0.701230 | 7.3:+28122626 | MS.gene51230:CDS |
| CCTGACCGTATATTGATGAG+TGG | 0.701393 | 7.3:+28120064 | MS.gene51230:CDS |
| TATGTCATCCGAAAGCATTG+CGG | 0.742783 | 7.3:-28122702 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAGAAAAAATAATACTT+TGG | + | chr7.3:28121090-28121109 | MS.gene51230:intron | 10.0% |
| !!! | AAGAATTTTTTCTTATATAT+AGG | - | chr7.3:28120870-28120889 | None:intergenic | 10.0% |
| !!! | TAAAATTTGATGATTTTTTA+AGG | + | chr7.3:28120376-28120395 | MS.gene51230:intron | 10.0% |
| !!! | TATTTTGAAACAAATTTTTT+TGG | + | chr7.3:28121176-28121195 | MS.gene51230:intron | 10.0% |
| !!! | TCTTATTTAATTTTTTTTCT+AGG | + | chr7.3:28119991-28120010 | MS.gene51230:intron | 10.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr7.3:28121333-28121352 | MS.gene51230:intron | 15.0% |
| !! | AAATTATCTTAATCAACTAT+TGG | + | chr7.3:28121056-28121075 | MS.gene51230:intron | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr7.3:28121334-28121353 | None:intergenic | 15.0% |
| !! | AATAGTTGATTAAGATAATT+TGG | - | chr7.3:28121057-28121076 | None:intergenic | 15.0% |
| !! | GTAACATAATATTAATTGAA+AGG | + | chr7.3:28121120-28121139 | MS.gene51230:intron | 15.0% |
| !! | TAAATGTGAAATTTGAATTA+AGG | - | chr7.3:28121837-28121856 | None:intergenic | 15.0% |
| !! | TGTTAAAAATAATGTGTTAA+GGG | - | chr7.3:28120691-28120710 | None:intergenic | 15.0% |
| !!! | AAAATTTGTTTCAAAATGAA+TGG | - | chr7.3:28121458-28121477 | None:intergenic | 15.0% |
| !!! | ATATTTTGTTTTGATGTAAA+AGG | + | chr7.3:28120290-28120309 | MS.gene51230:intron | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | + | chr7.3:28121460-28121479 | MS.gene51230:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr7.3:28121357-28121376 | MS.gene51230:intron | 15.0% |
| !!! | TATTTTGTTTTGATGTAAAA+GGG | + | chr7.3:28120291-28120310 | MS.gene51230:intron | 15.0% |
| !!! | TGATTTTTGGAATTAAATAT+TGG | - | chr7.3:28121589-28121608 | None:intergenic | 15.0% |
| !!! | TTTTATGTTTCTTAATTAAC+TGG | + | chr7.3:28121893-28121912 | MS.gene51230:intron | 15.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr7.3:28121343-28121362 | None:intergenic | 20.0% |
| !! | AAATTTCTTTCAACAAAAGT+TGG | - | chr7.3:28121757-28121776 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr7.3:28121420-28121439 | MS.gene51230:intron | 20.0% |
| !! | GTGTTAAAAATAATGTGTTA+AGG | - | chr7.3:28120692-28120711 | None:intergenic | 20.0% |
| !! | TATAGTTTATCAAAAGACAT+GGG | + | chr7.3:28122566-28122585 | MS.gene51230:CDS | 20.0% |
| !!! | AAGACATAAAGCTTTTTTTT+GGG | + | chr7.3:28120592-28120611 | MS.gene51230:intron | 20.0% |
| !!! | TCAACTTTAACTATGATTTT+TGG | - | chr7.3:28121602-28121621 | None:intergenic | 20.0% |
| !!! | TCTTTTTTAACAGCTAATTT+TGG | - | chr7.3:28120573-28120592 | None:intergenic | 20.0% |
| !!! | TGAATTAATCATGTTTTGTT+TGG | + | chr7.3:28120105-28120124 | MS.gene51230:CDS | 20.0% |
| !!! | TTTTGTTGAAAGAAATTTCA+TGG | + | chr7.3:28121759-28121778 | MS.gene51230:intron | 20.0% |
| !!! | TTTTTTCTTATATATAGGAC+CGG | - | chr7.3:28120865-28120884 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGGGTACATAATA+AGG | + | chr7.3:28120604-28120623 | MS.gene51230:intron | 20.0% |
| ! | AAATTTCATCACATACCAAA+TGG | - | chr7.3:28122451-28122470 | None:intergenic | 25.0% |
| ! | AAGAAAACATCAATGTGAAA+GGG | + | chr7.3:28122333-28122352 | MS.gene51230:CDS | 25.0% |
| ! | AATCAAATTCAAATCCTATG+TGG | - | chr7.3:28121969-28121988 | None:intergenic | 25.0% |
| ! | ATTTGACTAATAGACATGTT+TGG | + | chr7.3:28122176-28122195 | MS.gene51230:intron | 25.0% |
| ! | CTATAGTTTATCAAAAGACA+TGG | + | chr7.3:28122565-28122584 | MS.gene51230:CDS | 25.0% |
| ! | GAATAAAACCAGACATATAT+AGG | - | chr7.3:28120202-28120221 | None:intergenic | 25.0% |
| ! | GGTATGTGATGAAATTTATT+CGG | + | chr7.3:28122454-28122473 | MS.gene51230:CDS | 25.0% |
| ! | GTATGTGATGAAATTTATTC+GGG | + | chr7.3:28122455-28122474 | MS.gene51230:CDS | 25.0% |
| ! | TAAAAATAATGTGTTAAGGG+TGG | - | chr7.3:28120688-28120707 | None:intergenic | 25.0% |
| ! | TAAAACATCTTAGAGATAAG+TGG | - | chr7.3:28122034-28122053 | None:intergenic | 25.0% |
| ! | TATGTGATGAAATTTATTCG+GGG | + | chr7.3:28122456-28122475 | MS.gene51230:CDS | 25.0% |
| ! | TATTATTCCAGTTAAAAACC+TGG | - | chr7.3:28120461-28120480 | None:intergenic | 25.0% |
| ! | TTAAAGGAGAAAACATTTGA+AGG | + | chr7.3:28122866-28122885 | MS.gene51230:CDS | 25.0% |
| ! | TTCCTATAACATTCTGTATA+CGG | - | chr7.3:28120938-28120957 | None:intergenic | 25.0% |
| ! | TTTAGATGAAGAATTGAGTT+TGG | - | chr7.3:28122058-28122077 | None:intergenic | 25.0% |
| ! | TTTCCAAGTTGTGTTATATT+TGG | - | chr7.3:28121698-28121717 | None:intergenic | 25.0% |
| ! | TTTCTAATGTTGTTCCTAAA+GGG | - | chr7.3:28122382-28122401 | None:intergenic | 25.0% |
| ! | TTTCTGAACATTAAAGGAAT+TGG | - | chr7.3:28120320-28120339 | None:intergenic | 25.0% |
| !! | ACTTTATATGAGCTTTGATT+AGG | + | chr7.3:28122077-28122096 | MS.gene51230:intron | 25.0% |
| !! | AGAATTAGAGCATTTGTTAA+TGG | + | chr7.3:28123031-28123050 | MS.gene51230:CDS | 25.0% |
| !! | ATTCTTTTGGATGAATTTGA+GGG | + | chr7.3:28122838-28122857 | MS.gene51230:CDS | 25.0% |
| !! | TAATTACTTGTTGACTAATG+AGG | - | chr7.3:28121562-28121581 | None:intergenic | 25.0% |
| !! | TATTCTTTTGGATGAATTTG+AGG | + | chr7.3:28122837-28122856 | MS.gene51230:CDS | 25.0% |
| !! | TTTTCTAATGTTGTTCCTAA+AGG | - | chr7.3:28122383-28122402 | None:intergenic | 25.0% |
| !!! | AAACGACACTTATTTTGAAA+CGG | - | chr7.3:28121251-28121270 | None:intergenic | 25.0% |
| !!! | AATTAAGGAAAAGTGTTATG+TGG | - | chr7.3:28121822-28121841 | None:intergenic | 25.0% |
| !!! | GAAGACATAAAGCTTTTTTT+TGG | + | chr7.3:28120591-28120610 | MS.gene51230:intron | 25.0% |
| !!! | TTAAATTGTGTCCACTTTTA+AGG | - | chr7.3:28120251-28120270 | None:intergenic | 25.0% |
| !!! | TTAATTTTTTTTCTAGGCTG+TGG | + | chr7.3:28119997-28120016 | MS.gene51230:intron | 25.0% |
| !!! | TTCAAAATAAGTGTCGTTTT+AGG | + | chr7.3:28121252-28121271 | MS.gene51230:intron | 25.0% |
| AAACAGTTGAAATCAAACGT+TGG | + | chr7.3:28123068-28123087 | MS.gene51230:CDS | 30.0% | |
| AATTGTTTGAGCTATGACAT+TGG | - | chr7.3:28122265-28122284 | None:intergenic | 30.0% | |
| AATTTCATGTCAAAAGTGAG+AGG | + | chr7.3:28120022-28120041 | MS.gene51230:intron | 30.0% | |
| ATCAGAATACAGTCATCTTA+TGG | + | chr7.3:28121654-28121673 | MS.gene51230:intron | 30.0% | |
| CAATGAAAACAACATCCATT+TGG | + | chr7.3:28122433-28122452 | MS.gene51230:CDS | 30.0% | |
| CATATTTGTGGACAAATTCT+TGG | + | chr7.3:28122721-28122740 | MS.gene51230:CDS | 30.0% | |
| GAAGAAAACATCAATGTGAA+AGG | + | chr7.3:28122332-28122351 | MS.gene51230:CDS | 30.0% | |
| TATAGGAGTAATGAAAAGAG+AGG | - | chr7.3:28120185-28120204 | None:intergenic | 30.0% | |
| TATATCTTTGCTTGACCATA+GGG | + | chr7.3:28121942-28121961 | MS.gene51230:intron | 30.0% | |
| TCATTACTCCTATATATGTC+TGG | + | chr7.3:28120191-28120210 | MS.gene51230:intron | 30.0% | |
| TGGGTACATAATAAGGTATA+AGG | + | chr7.3:28120611-28120630 | MS.gene51230:intron | 30.0% | |
| TTACATACGCTGGATAATAA+GGG | - | chr7.3:28120162-28120181 | None:intergenic | 30.0% | |
| TTATATCTTTGCTTGACCAT+AGG | + | chr7.3:28121941-28121960 | MS.gene51230:intron | 30.0% | |
| TTGAAGGTGAAATGAAACTT+TGG | + | chr7.3:28122882-28122901 | MS.gene51230:CDS | 30.0% | |
| TTGCTTACATTTCTGAATTC+TGG | - | chr7.3:28119882-28119901 | None:intergenic | 30.0% | |
| TTGTTAATGGCAGAGAAAAA+GGG | + | chr7.3:28123044-28123063 | MS.gene51230:CDS | 30.0% | |
| TTTGTTAATGGCAGAGAAAA+AGG | + | chr7.3:28123043-28123062 | MS.gene51230:CDS | 30.0% | |
| ! | TTCTTTTGGATGAATTTGAG+GGG | + | chr7.3:28122839-28122858 | MS.gene51230:CDS | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr7.3:28121202-28121221 | MS.gene51230:intron | 30.0% |
| !!! | GACACTCATTTTAAAACGTA+GGG | + | chr7.3:28121490-28121509 | MS.gene51230:intron | 30.0% |
| !!! | TAGAGTTTGTTTTGCTAACA+TGG | + | chr7.3:28122979-28122998 | MS.gene51230:CDS | 30.0% |
| AAACAAACTCTATACCAACC+AGG | - | chr7.3:28122971-28122990 | None:intergenic | 35.0% | |
| AAACAGTTGAGATTGCATTG+AGG | + | chr7.3:28123008-28123027 | MS.gene51230:CDS | 35.0% | |
| AAGATGACTGTATTCTGATG+TGG | - | chr7.3:28121653-28121672 | None:intergenic | 35.0% | |
| ACAAATCCATCAAACCCTTT+AGG | + | chr7.3:28122365-28122384 | MS.gene51230:CDS | 35.0% | |
| AGAATGTTATGTCTCCTCAT+AGG | + | chr7.3:28123134-28123153 | MS.gene51230:CDS | 35.0% | |
| AGTAAAGCTTAATGTTTCGC+CGG | + | chr7.3:28122922-28122941 | MS.gene51230:CDS | 35.0% | |
| ATAAAATGAGCTACTTCCTC+CGG | + | chr7.3:28120843-28120862 | MS.gene51230:intron | 35.0% | |
| CAGCCAAATATAACACAACT+TGG | + | chr7.3:28121692-28121711 | MS.gene51230:intron | 35.0% | |
| CGCTGAAGTTATTCAAGAAA+TGG | + | chr7.3:28122511-28122530 | MS.gene51230:CDS | 35.0% | |
| GACCGTATACAGAATGTTAT+AGG | + | chr7.3:28120933-28120952 | MS.gene51230:intron | 35.0% | |
| GGTAGAAAAATGTCGAGTTT+CGG | + | chr7.3:28122647-28122666 | MS.gene51230:CDS | 35.0% | |
| GTATGTTGGATTGTCGAAAA+CGG | - | chr7.3:28122483-28122502 | None:intergenic | 35.0% | |
| GTGCACTTTCTGAACATTAA+AGG | - | chr7.3:28120326-28120345 | None:intergenic | 35.0% | |
| GTTACATACGCTGGATAATA+AGG | - | chr7.3:28120163-28120182 | None:intergenic | 35.0% | |
| GTTCAAGAAGATTAAGAGAG+CGG | + | chr7.3:28122750-28122769 | MS.gene51230:CDS | 35.0% | |
| TATTCCAGTTAAAAACCTGG+TGG | - | chr7.3:28120458-28120477 | None:intergenic | 35.0% | |
| TGATGTGGTCATGATTTCAA+AGG | - | chr7.3:28121638-28121657 | None:intergenic | 35.0% | |
| TTTCAAGCACACCTTAAAAG+TGG | + | chr7.3:28120237-28120256 | MS.gene51230:intron | 35.0% | |
| TTTCTTATATATAGGACCGG+AGG | - | chr7.3:28120862-28120881 | None:intergenic | 35.0% | |
| ! | GATTTGTACGTGATTTGTGT+TGG | + | chr7.3:28122213-28122232 | MS.gene51230:intron | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | chr7.3:28121382-28121401 | MS.gene51230:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr7.3:28121386-28121405 | MS.gene51230:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr7.3:28120974-28120993 | None:intergenic | 35.0% |
| !! | GAATTTGAGGGGTTTGTTAA+AGG | + | chr7.3:28122850-28122869 | MS.gene51230:CDS | 35.0% |
| !! | GACTTAGCTTTTCTTCAAGA+AGG | + | chr7.3:28123104-28123123 | MS.gene51230:CDS | 35.0% |
| !! | TTCAAAATGAGTGTCGCTTT+AGG | + | chr7.3:28120975-28120994 | MS.gene51230:intron | 35.0% |
| !!! | CGACACTCATTTTAAAACGT+AGG | + | chr7.3:28121489-28121508 | MS.gene51230:intron | 35.0% |
| !!! | GACACTTATTTTGAAACGGA+GGG | - | chr7.3:28121247-28121266 | None:intergenic | 35.0% |
| AAAAGAGAGGTTACATACGC+TGG | - | chr7.3:28120172-28120191 | None:intergenic | 40.0% | |
| AACGATGAAGTTGTGAACTG+CGG | + | chr7.3:28122626-28122645 | MS.gene51230:CDS | 40.0% | |
| AAGAATAGCCCTGCATTACT+TGG | - | chr7.3:28122824-28122843 | None:intergenic | 40.0% | |
| ACTTGCTTACCAAGTAATGC+AGG | + | chr7.3:28122812-28122831 | MS.gene51230:CDS | 40.0% | |
| AGTTGTTGATATACTCCACC+AGG | + | chr7.3:28120440-28120459 | MS.gene51230:intron | 40.0% | |
| CTCCACCACTCATCAATATA+CGG | - | chr7.3:28120072-28120091 | None:intergenic | 40.0% | |
| CTTGCTTACCAAGTAATGCA+GGG | + | chr7.3:28122813-28122832 | MS.gene51230:CDS | 40.0% | |
| GCTTTCGGATGACATATTTG+TGG | + | chr7.3:28122709-28122728 | MS.gene51230:CDS | 40.0% | |
| GTAAAGCTTAATGTTTCGCC+GGG | + | chr7.3:28122923-28122942 | MS.gene51230:CDS | 40.0% | |
| GTTGTTCCTAAAGGGTTTGA+TGG | - | chr7.3:28122374-28122393 | None:intergenic | 40.0% | |
| TTCATGTCAAAAGTGAGAGG+TGG | + | chr7.3:28120025-28120044 | MS.gene51230:intron | 40.0% | |
| TTTGAGCTATGACATTGGAC+AGG | - | chr7.3:28122260-28122279 | None:intergenic | 40.0% | |
| ! | GCGCTAATTAATTTGACAGC+AGG | + | chr7.3:28121527-28121546 | MS.gene51230:intron | 40.0% |
| ! | GTAATGCAGGGCTATTCTTT+TGG | + | chr7.3:28122825-28122844 | MS.gene51230:CDS | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | chr7.3:28121385-28121404 | MS.gene51230:intron | 40.0% |
| ! | TACTCCACCAGGTTTTTAAC+TGG | + | chr7.3:28120451-28120470 | MS.gene51230:intron | 40.0% |
| !! | TATGTCATCCGAAAGCATTG+CGG | - | chr7.3:28122705-28122724 | None:intergenic | 40.0% |
| !! | TTTTCTAGCCGCAATGCTTT+CGG | + | chr7.3:28122694-28122713 | MS.gene51230:CDS | 40.0% |
| !!! | ATGTTTTGTTTGGCTGATCC+TGG | + | chr7.3:28120115-28120134 | MS.gene51230:CDS | 40.0% |
| !!! | CGACACTTATTTTGAAACGG+AGG | - | chr7.3:28121248-28121267 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+TGG | - | chr7.3:28120970-28120989 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGT+GGG | + | chr7.3:28121206-28121225 | MS.gene51230:intron | 40.0% |
| !!! | TGATCCTGGTGATGCTTTTT+TGG | + | chr7.3:28120129-28120148 | MS.gene51230:CDS | 40.0% |
| ACAAGTGGTGAATGAGGCAT+TGG | - | chr7.3:28123175-28123194 | None:intergenic | 45.0% | |
| CAAATCCTATGTGGTCCCTA+TGG | - | chr7.3:28121960-28121979 | None:intergenic | 45.0% | |
| CCACTCATCAATATACGGTC+AGG | - | chr7.3:28120067-28120086 | None:intergenic | 45.0% | |
| CCTGACCGTATATTGATGAG+TGG | + | chr7.3:28120064-28120083 | MS.gene51230:CDS | 45.0% | |
| GAATGAGGAGACATCCTATG+AGG | - | chr7.3:28123151-28123170 | None:intergenic | 45.0% | |
| GACAGGAATTAGTTGCACAC+CGG | - | chr7.3:28122243-28122262 | None:intergenic | 45.0% | |
| GACCGTATATTGATGAGTGG+TGG | + | chr7.3:28120067-28120086 | MS.gene51230:CDS | 45.0% | |
| GAGCAATTAAAAGCCGAACC+CGG | - | chr7.3:28122944-28122963 | None:intergenic | 45.0% | |
| GTCAAAAGTGAGAGGTGGTA+GGG | + | chr7.3:28120030-28120049 | MS.gene51230:intron | 45.0% | |
| TACGCTGGATAATAAGGGCT+AGG | - | chr7.3:28120157-28120176 | None:intergenic | 45.0% | |
| TCAAAAGACATGGGTCTTCC+AGG | + | chr7.3:28122575-28122594 | MS.gene51230:CDS | 45.0% | |
| TCAGCGACACTTACGTATGT+TGG | - | chr7.3:28122497-28122516 | None:intergenic | 45.0% | |
| TGTCAAAAGTGAGAGGTGGT+AGG | + | chr7.3:28120029-28120048 | MS.gene51230:intron | 45.0% | |
| ! | CGGCGCGAATTTTTCACAAA+GGG | + | chr7.3:28122770-28122789 | MS.gene51230:CDS | 45.0% |
| ! | CGTGATTTGTGTTGGAGAAC+CGG | + | chr7.3:28122221-28122240 | MS.gene51230:CDS | 45.0% |
| ! | TTAATTGCTCTGAGCCTGGT+TGG | + | chr7.3:28122954-28122973 | MS.gene51230:CDS | 45.0% |
| !! | ACCAAACCGACTCTAAAACC+TGG | - | chr7.3:28122596-28122615 | None:intergenic | 45.0% |
| !! | GAATGAGGCATTGGTGAATG+AGG | - | chr7.3:28123166-28123185 | None:intergenic | 45.0% |
| !! | GCTTTTAATTGCTCTGAGCC+TGG | + | chr7.3:28122950-28122969 | MS.gene51230:CDS | 45.0% |
| !! | GGAACCAAAAAAGCATCACC+AGG | - | chr7.3:28120136-28120155 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+TGG | + | chr7.3:28121205-28121224 | MS.gene51230:intron | 45.0% |
| !!! | GGTCTTCCAGGTTTTAGAGT+CGG | + | chr7.3:28122587-28122606 | MS.gene51230:CDS | 45.0% |
| !!! | TCCAGGTTTTAGAGTCGGTT+TGG | + | chr7.3:28122592-28122611 | MS.gene51230:CDS | 45.0% |
| !! | ATCTTTAATAAAAATAAAAA+TGG | + | chr7.3:28120743-28120762 | MS.gene51230:intron | 5.0% |
| !!! | TTTTTTTTTTAAAAAGATAT+AGG | - | chr7.3:28120542-28120561 | None:intergenic | 5.0% |
| CTTGACCATAGGGACCACAT+AGG | + | chr7.3:28121952-28121971 | MS.gene51230:intron | 50.0% | |
| GCTCGAACAAGTGGTGAATG+AGG | - | chr7.3:28123181-28123200 | None:intergenic | 50.0% | |
| GCTTAATGTTTCGCCGGGTT+CGG | + | chr7.3:28122928-28122947 | MS.gene51230:CDS | 50.0% | |
| ! | GCGGCGCGAATTTTTCACAA+AGG | + | chr7.3:28122769-28122788 | MS.gene51230:CDS | 50.0% |
| ! | TTGATGAGTGGTGGAGCAAC+AGG | + | chr7.3:28120076-28120095 | MS.gene51230:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 28119871 | 28123207 | 28119871 | ID=MS.gene51230 |
| chr7.3 | mRNA | 28119871 | 28123207 | 28119871 | ID=MS.gene51230.t1;Parent=MS.gene51230 |
| chr7.3 | exon | 28119871 | 28119893 | 28119871 | ID=MS.gene51230.t1.exon1;Parent=MS.gene51230.t1 |
| chr7.3 | CDS | 28119871 | 28119893 | 28119871 | ID=cds.MS.gene51230.t1;Parent=MS.gene51230.t1 |
| chr7.3 | exon | 28120051 | 28120173 | 28120051 | ID=MS.gene51230.t1.exon2;Parent=MS.gene51230.t1 |
| chr7.3 | CDS | 28120051 | 28120173 | 28120051 | ID=cds.MS.gene51230.t1;Parent=MS.gene51230.t1 |
| chr7.3 | exon | 28122214 | 28123207 | 28122214 | ID=MS.gene51230.t1.exon3;Parent=MS.gene51230.t1 |
| chr7.3 | CDS | 28122214 | 28123207 | 28122214 | ID=cds.MS.gene51230.t1;Parent=MS.gene51230.t1 |
| Gene Sequence |
| Protein sequence |
