Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52979.t1 | RHN80358.1 | 98.1 | 772 | 15 | 0 | 1 | 772 | 54 | 825 | 0.00E+00 | 1504.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52979.t1 | Q8S403 | 65.7 | 788 | 246 | 7 | 1 | 771 | 1 | 781 | 3.1e-296 | 1018.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52979.t1 | G7I4U1 | 98.1 | 772 | 15 | 0 | 1 | 772 | 1 | 772 | 0.0e+00 | 1504.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene52979 | -0.828652 | 7.98E-55 | -1.69E-46 |
| MS.gene051138 | MS.gene52979 | 0.806106 | 9.66E-50 | -1.69E-46 |
| MS.gene051364 | MS.gene52979 | 0.803585 | 3.25E-49 | -1.69E-46 |
| MS.gene051749 | MS.gene52979 | 0.818224 | 2.19E-52 | -1.69E-46 |
| MS.gene051907 | MS.gene52979 | 0.803043 | 4.21E-49 | -1.69E-46 |
| MS.gene051973 | MS.gene52979 | 0.834444 | 2.99E-56 | -1.69E-46 |
| MS.gene052129 | MS.gene52979 | 0.81402 | 1.91E-51 | -1.69E-46 |
| MS.gene05240 | MS.gene52979 | 0.800526 | 1.38E-48 | -1.69E-46 |
| MS.gene05244 | MS.gene52979 | 0.802484 | 5.49E-49 | -1.69E-46 |
| MS.gene052606 | MS.gene52979 | 0.839947 | 1.17E-57 | -1.69E-46 |
| MS.gene05470 | MS.gene52979 | -0.806007 | 1.01E-49 | -1.69E-46 |
| MS.gene054884 | MS.gene52979 | 0.824022 | 1.01E-53 | -1.69E-46 |
| MS.gene055729 | MS.gene52979 | 0.841743 | 3.95E-58 | -1.69E-46 |
| MS.gene055730 | MS.gene52979 | 0.837986 | 3.76E-57 | -1.69E-46 |
| MS.gene055731 | MS.gene52979 | 0.859464 | 4.06E-63 | -1.69E-46 |
| MS.gene056590 | MS.gene52979 | 0.813685 | 2.26E-51 | -1.69E-46 |
| MS.gene056591 | MS.gene52979 | 0.813709 | 2.23E-51 | -1.69E-46 |
| MS.gene056678 | MS.gene52979 | 0.801239 | 9.89E-49 | -1.69E-46 |
| MS.gene056748 | MS.gene52979 | 0.827813 | 1.27E-54 | -1.69E-46 |
| MS.gene056856 | MS.gene52979 | 0.836641 | 8.31E-57 | -1.69E-46 |
| MS.gene056988 | MS.gene52979 | 0.835693 | 1.45E-56 | -1.69E-46 |
| MS.gene057658 | MS.gene52979 | -0.803212 | 3.88E-49 | -1.69E-46 |
| MS.gene058158 | MS.gene52979 | 0.828676 | 7.88E-55 | -1.69E-46 |
| MS.gene058334 | MS.gene52979 | 0.824936 | 6.16E-54 | -1.69E-46 |
| MS.gene058603 | MS.gene52979 | 0.826857 | 2.15E-54 | -1.69E-46 |
| MS.gene058838 | MS.gene52979 | -0.841077 | 5.91E-58 | -1.69E-46 |
| MS.gene05914 | MS.gene52979 | -0.817513 | 3.17E-52 | -1.69E-46 |
| MS.gene05960 | MS.gene52979 | 0.803355 | 3.63E-49 | -1.69E-46 |
| MS.gene059953 | MS.gene52979 | 0.812202 | 4.77E-51 | -1.69E-46 |
| MS.gene059955 | MS.gene52979 | 0.824525 | 7.70E-54 | -1.69E-46 |
| MS.gene061044 | MS.gene52979 | 0.813014 | 3.17E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52979.t1 | MTR_1g075640 | 98.057 | 772 | 15 | 0 | 1 | 772 | 1 | 772 | 0.0 | 1582 |
| MS.gene52979.t1 | MTR_1g041695 | 76.448 | 777 | 172 | 4 | 1 | 771 | 1 | 772 | 0.0 | 1209 |
| MS.gene52979.t1 | MTR_8g069955 | 47.170 | 795 | 380 | 9 | 1 | 771 | 1 | 779 | 0.0 | 727 |
| MS.gene52979.t1 | MTR_8g069955 | 46.545 | 767 | 370 | 9 | 1 | 743 | 1 | 751 | 0.0 | 687 |
| MS.gene52979.t1 | MTR_8g069955 | 46.122 | 722 | 349 | 9 | 1 | 698 | 1 | 706 | 0.0 | 634 |
| MS.gene52979.t1 | MTR_7g011350 | 34.783 | 782 | 478 | 15 | 2 | 765 | 1 | 768 | 3.73e-142 | 437 |
| MS.gene52979.t1 | MTR_2g045780 | 34.701 | 804 | 480 | 18 | 2 | 771 | 1 | 793 | 3.36e-141 | 435 |
| MS.gene52979.t1 | MTR_5g042150 | 32.952 | 786 | 491 | 14 | 4 | 771 | 3 | 770 | 1.77e-139 | 430 |
| MS.gene52979.t1 | MTR_7g011330 | 34.689 | 787 | 487 | 16 | 2 | 771 | 1 | 777 | 2.38e-136 | 422 |
| MS.gene52979.t1 | MTR_7g011330 | 34.904 | 785 | 485 | 16 | 2 | 771 | 1 | 774 | 4.24e-136 | 421 |
| MS.gene52979.t1 | MTR_2g045780 | 32.877 | 730 | 447 | 16 | 2 | 699 | 1 | 719 | 3.78e-111 | 354 |
| MS.gene52979.t1 | MTR_7g011280 | 37.783 | 397 | 239 | 5 | 381 | 771 | 30 | 424 | 8.67e-92 | 294 |
| MS.gene52979.t1 | MTR_7g011310 | 29.177 | 401 | 253 | 9 | 2 | 387 | 1 | 385 | 3.22e-38 | 147 |
| MS.gene52979.t1 | MTR_6g034015 | 41.714 | 175 | 82 | 3 | 617 | 771 | 2 | 176 | 1.70e-37 | 139 |
| MS.gene52979.t1 | MTR_2g088870 | 28.267 | 375 | 226 | 14 | 404 | 754 | 91 | 446 | 2.82e-34 | 137 |
| MS.gene52979.t1 | MTR_2g088870 | 28.267 | 375 | 224 | 15 | 404 | 754 | 91 | 444 | 1.13e-32 | 132 |
| MS.gene52979.t1 | MTR_7g076560 | 29.446 | 343 | 207 | 14 | 424 | 747 | 76 | 402 | 3.24e-32 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52979.t1 | AT3G23430 | 65.736 | 788 | 246 | 7 | 1 | 771 | 1 | 781 | 0.0 | 1055 |
| MS.gene52979.t1 | AT1G68740 | 45.844 | 794 | 396 | 11 | 1 | 771 | 1 | 783 | 0.0 | 690 |
| MS.gene52979.t1 | AT1G68740 | 43.664 | 726 | 375 | 11 | 1 | 703 | 1 | 715 | 0.0 | 584 |
| MS.gene52979.t1 | AT1G26730 | 35.045 | 779 | 467 | 13 | 2 | 771 | 1 | 749 | 4.14e-149 | 454 |
| MS.gene52979.t1 | AT1G14040 | 32.841 | 813 | 499 | 12 | 2 | 771 | 1 | 809 | 9.81e-149 | 455 |
| MS.gene52979.t1 | AT1G35350 | 35.083 | 781 | 465 | 15 | 2 | 771 | 1 | 750 | 1.27e-147 | 450 |
| MS.gene52979.t1 | AT3G29060 | 32.603 | 822 | 469 | 14 | 2 | 767 | 1 | 793 | 1.44e-146 | 449 |
| MS.gene52979.t1 | AT4G25350 | 33.848 | 777 | 473 | 11 | 2 | 772 | 1 | 742 | 6.36e-143 | 438 |
| MS.gene52979.t1 | AT2G03240 | 32.812 | 832 | 484 | 15 | 2 | 771 | 1 | 819 | 1.47e-138 | 429 |
| MS.gene52979.t1 | AT1G69480 | 33.037 | 787 | 482 | 14 | 2 | 765 | 1 | 765 | 1.49e-138 | 427 |
| MS.gene52979.t1 | AT1G69480 | 33.037 | 787 | 482 | 14 | 2 | 765 | 1 | 765 | 1.49e-138 | 427 |
| MS.gene52979.t1 | AT2G03260 | 32.147 | 815 | 496 | 14 | 2 | 771 | 1 | 803 | 6.52e-134 | 416 |
| MS.gene52979.t1 | AT1G35350 | 39.961 | 513 | 294 | 5 | 268 | 771 | 59 | 566 | 1.76e-129 | 397 |
| MS.gene52979.t1 | AT2G03260 | 38.058 | 515 | 307 | 4 | 267 | 771 | 78 | 590 | 5.55e-125 | 387 |
| MS.gene52979.t1 | AT1G26730 | 32.489 | 711 | 444 | 12 | 2 | 706 | 1 | 681 | 3.77e-115 | 364 |
| MS.gene52979.t1 | AT2G03250 | 29.737 | 723 | 464 | 16 | 2 | 707 | 1 | 696 | 1.65e-98 | 321 |
| MS.gene52979.t1 | AT2G03250 | 29.248 | 612 | 397 | 13 | 2 | 604 | 1 | 585 | 7.63e-75 | 254 |
| MS.gene52979.t1 | AT2G32295 | 28.342 | 374 | 223 | 17 | 424 | 772 | 98 | 451 | 1.71e-31 | 129 |
| MS.gene52979.t1 | AT2G32295 | 28.342 | 374 | 223 | 17 | 424 | 772 | 98 | 451 | 1.71e-31 | 129 |
| MS.gene52979.t1 | AT5G35730 | 27.729 | 339 | 218 | 13 | 424 | 747 | 102 | 428 | 3.12e-30 | 125 |
Find 132 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTCTCATTGCCATTCT+AGG | 0.174578 | 1.1:-56607859 | None:intergenic |
| TATCCTTTATGCCATATTAT+TGG | 0.198668 | 1.1:+56612809 | MS.gene52979:CDS |
| TCTCTTGTTTAATGTAAAAT+TGG | 0.199156 | 1.1:-56607167 | None:intergenic |
| CACCCTCAAAACAACGTTTA+AGG | 0.208521 | 1.1:-56613307 | None:intergenic |
| TTGGCTTACTCAAAACTTAT+AGG | 0.246252 | 1.1:+56608040 | MS.gene52979:CDS |
| TTGAAGTTTACCTTATAAAA+TGG | 0.247316 | 1.1:-56612416 | None:intergenic |
| GGCGAAGTGCTTTGTGAATA+TGG | 0.251631 | 1.1:-56611048 | None:intergenic |
| ACTTTCCCATGTTAGCTAAA+TGG | 0.256879 | 1.1:-56612976 | None:intergenic |
| TGCAACCACTGTTGTCATTA+AGG | 0.259161 | 1.1:-56612075 | None:intergenic |
| ATCTCTAAGCCATGTATTTC+TGG | 0.262133 | 1.1:-56613155 | None:intergenic |
| CTCCTCCGTCGGCGTGGTTA+TGG | 0.264244 | 1.1:-56605121 | None:intergenic |
| TATCATTTATAATTTGCTTT+AGG | 0.270894 | 1.1:-56607245 | None:intergenic |
| CGGGATTCTGATTATTCATT+AGG | 0.279413 | 1.1:+56607333 | MS.gene52979:CDS |
| ATTTATATTATTAGGTTCTT+AGG | 0.283639 | 1.1:+56611006 | MS.gene52979:intron |
| GTGTTATCATGATCAGATTC+AGG | 0.293820 | 1.1:-56605200 | None:intergenic |
| TTGTTCTCTTCCACATATAT+AGG | 0.297573 | 1.1:-56611974 | None:intergenic |
| TCACTCTGGAAGACTGTATA+TGG | 0.300089 | 1.1:+56612771 | MS.gene52979:CDS |
| GATTCCATTGCTAAGGCATT+TGG | 0.302519 | 1.1:+56612690 | MS.gene52979:intron |
| ATGAGAATCTTTATGTTGTT+GGG | 0.307349 | 1.1:-56611108 | None:intergenic |
| CGCCAACAATGACAGGAAAA+AGG | 0.314572 | 1.1:+56611067 | MS.gene52979:CDS |
| TTGCAGGAAGTGCATCAATT+TGG | 0.321566 | 1.1:-56612145 | None:intergenic |
| TGCATAGCACGCCAATAATA+TGG | 0.325310 | 1.1:-56612820 | None:intergenic |
| TCTGTATTATTTGCCTTTGT+TGG | 0.332893 | 1.1:-56607288 | None:intergenic |
| GCTTAATTTGCAGAATGTTT+AGG | 0.332993 | 1.1:+56607718 | MS.gene52979:intron |
| CAGCTATTACTAGCATGCTT+TGG | 0.334532 | 1.1:+56607914 | MS.gene52979:CDS |
| AAAGCAAAGAGAATTGAAAA+TGG | 0.340353 | 1.1:-56605147 | None:intergenic |
| TGATAACACAAATATCATTA+AGG | 0.343366 | 1.1:+56605214 | MS.gene52979:CDS |
| GTGGAGCTCTATAGAGGCCT+TGG | 0.346019 | 1.1:+56608021 | MS.gene52979:CDS |
| GCTCGAGTTGCATTTGTTCC+AGG | 0.348462 | 1.1:-56607886 | None:intergenic |
| TTATTAGGTTCTTAGGCTAA+TGG | 0.351332 | 1.1:+56611013 | MS.gene52979:intron |
| CAACCACTTATCAACTCTAT+TGG | 0.357066 | 1.1:+56613095 | MS.gene52979:CDS |
| TGCAGAATGTTTAGGAGATT+CGG | 0.369539 | 1.1:+56607726 | MS.gene52979:intron |
| AACCACTTATCAACTCTATT+GGG | 0.370941 | 1.1:+56613096 | MS.gene52979:CDS |
| AGCTATTACTAGCATGCTTT+GGG | 0.372445 | 1.1:+56607915 | MS.gene52979:CDS |
| CCTTATCAGAACTAACGAAA+TGG | 0.375830 | 1.1:-56610535 | None:intergenic |
| ACGAATGCCTCCTTCCATTC+TGG | 0.378946 | 1.1:-56605035 | None:intergenic |
| TATGAGAATCTTTATGTTGT+TGG | 0.379645 | 1.1:-56611109 | None:intergenic |
| TATGCTTAAGTGATGTCCTT+GGG | 0.382707 | 1.1:-56612028 | None:intergenic |
| GTGAGGAAGAAAACCATAAA+AGG | 0.387305 | 1.1:+56606934 | MS.gene52979:CDS |
| TCCTTTGCAGGGTTGTCTAC+AGG | 0.395365 | 1.1:+56611616 | MS.gene52979:intron |
| CCATTTCGTTAGTTCTGATA+AGG | 0.398330 | 1.1:+56610535 | MS.gene52979:CDS |
| ATAATTGAACAAGCTCTGTT+TGG | 0.399517 | 1.1:-56606975 | None:intergenic |
| AGCCATGTATTTCTGGAGTT+AGG | 0.407197 | 1.1:-56613148 | None:intergenic |
| AACTACTAGTTGTAACCTAT+TGG | 0.410734 | 1.1:+56612714 | MS.gene52979:CDS |
| CTTCCAGAGTGACAAGTCTC+AGG | 0.411067 | 1.1:-56612760 | None:intergenic |
| AGCCTGCACTTATTTATGTA+TGG | 0.411360 | 1.1:+56611945 | MS.gene52979:CDS |
| ACTTCCTGCAATATTACTTC+TGG | 0.423000 | 1.1:+56612157 | MS.gene52979:CDS |
| AGGAGGCATTCGTGAACTAT+TGG | 0.429457 | 1.1:+56605045 | MS.gene52979:CDS |
| GATATTGAAGAAATTTGATA+AGG | 0.433527 | 1.1:+56608244 | MS.gene52979:CDS |
| GTATTATTTGCCTTTGTTGG+CGG | 0.447529 | 1.1:-56607285 | None:intergenic |
| GACACGGATAAAACAGTAAC+GGG | 0.456951 | 1.1:-56612372 | None:intergenic |
| CTAACCAGAAGTAATATTGC+AGG | 0.460005 | 1.1:-56612161 | None:intergenic |
| TCAGAATCTGTCTCTCGAAA+TGG | 0.463930 | 1.1:-56613620 | None:intergenic |
| CTTATCAGAACTAACGAAAT+GGG | 0.470046 | 1.1:-56610534 | None:intergenic |
| CTCGAGTTGCATTTGTTCCA+GGG | 0.472618 | 1.1:-56607885 | None:intergenic |
| ACGCCAATAATATGGCATAA+AGG | 0.472830 | 1.1:-56612812 | None:intergenic |
| CAGATTCAGGTGAGAGCTTG+AGG | 0.474687 | 1.1:-56605187 | None:intergenic |
| GAGGGCATTGGAATTTCTAC+AGG | 0.487620 | 1.1:+56613421 | MS.gene52979:CDS |
| TAACATGGGAAAGTATGTTT+CGG | 0.489749 | 1.1:+56612985 | MS.gene52979:CDS |
| AAGTTATTCGAAGAGGGCAT+TGG | 0.491191 | 1.1:+56613409 | MS.gene52979:CDS |
| GACAACAGTGGTTGCAGCAA+TGG | 0.492576 | 1.1:+56612082 | MS.gene52979:CDS |
| ACAACATAAAGATTCTCATA+TGG | 0.498007 | 1.1:+56611112 | MS.gene52979:CDS |
| CTATGCTTAAGTGATGTCCT+TGG | 0.502908 | 1.1:-56612029 | None:intergenic |
| TTTCGGCGATGGTAGCAGCC+GGG | 0.514299 | 1.1:+56613002 | MS.gene52979:CDS |
| GATTTAGTGAACAATCCAAC+AGG | 0.519226 | 1.1:+56607940 | MS.gene52979:CDS |
| GGATAAAACAGTAACGGGTC+GGG | 0.521732 | 1.1:-56612367 | None:intergenic |
| AGCACTTCGCCAACAATGAC+AGG | 0.527144 | 1.1:+56611060 | MS.gene52979:CDS |
| ATCCATACATAAATAAGTGC+AGG | 0.527262 | 1.1:-56611947 | None:intergenic |
| AAAGAAAGGAAAGCCTAGAA+TGG | 0.527856 | 1.1:+56607846 | MS.gene52979:CDS |
| GGCTGATCAACTAACTAGCC+AGG | 0.528042 | 1.1:+56612556 | MS.gene52979:CDS |
| GTTTCGGCGATGGTAGCAGC+CGG | 0.528660 | 1.1:+56613001 | MS.gene52979:CDS |
| TGTGAACCATTTAGCTAACA+TGG | 0.530263 | 1.1:+56612970 | MS.gene52979:CDS |
| AGAAATTTCACATACAGAAG+AGG | 0.536149 | 1.1:+56607762 | MS.gene52979:CDS |
| CACCCTGAGACTTGTCACTC+TGG | 0.536341 | 1.1:+56612757 | MS.gene52979:CDS |
| TGAGAATCTTTATGTTGTTG+GGG | 0.542063 | 1.1:-56611107 | None:intergenic |
| TTGTGAATGAAATCTCCTGT+TGG | 0.543831 | 1.1:-56607955 | None:intergenic |
| GTTTCCAAATGCCTTAGCAA+TGG | 0.544525 | 1.1:-56612694 | None:intergenic |
| ATCCCAATAGAGTTGATAAG+TGG | 0.549202 | 1.1:-56613098 | None:intergenic |
| CACTTGAAGTTATTCGAAGA+GGG | 0.550159 | 1.1:+56613403 | MS.gene52979:CDS |
| TATTACTAGCATGCTTTGGG+AGG | 0.550285 | 1.1:+56607918 | MS.gene52979:CDS |
| ACGGAACTGTCTTCACTGCT+CGG | 0.550399 | 1.1:-56613595 | None:intergenic |
| GGGCGATAAAAGAGGTCGAA+TGG | 0.551001 | 1.1:-56612347 | None:intergenic |
| ATCCTGCAGCCCTTAAAAGA+AGG | 0.553004 | 1.1:-56612112 | None:intergenic |
| AACGGGTCGGGCGATAAAAG+AGG | 0.558478 | 1.1:-56612355 | None:intergenic |
| GAATACAGATTCCATTGCTA+AGG | 0.561087 | 1.1:+56612683 | MS.gene52979:intron |
| CATAACCACGCCGACGGAGG+AGG | 0.561324 | 1.1:+56605122 | MS.gene52979:CDS |
| CTTTGGCAGCTCACTGAACA+TGG | 0.563255 | 1.1:+56608208 | MS.gene52979:intron |
| CTTTCCCGCGTTCTCCAGCA+CGG | 0.563353 | 1.1:+56607313 | MS.gene52979:CDS |
| AAGCTCAACTCATACCAGAA+TGG | 0.565158 | 1.1:+56605021 | MS.gene52979:CDS |
| AAGAAAACCATAAAAGGCAG+TGG | 0.567667 | 1.1:+56606940 | MS.gene52979:CDS |
| GAATAATCAGAATCCCGTGC+TGG | 0.569715 | 1.1:-56607327 | None:intergenic |
| ATATAAGCTGACTCATTGCT+AGG | 0.573301 | 1.1:-56611700 | None:intergenic |
| ACTATCATGCATTTCAAAGT+CGG | 0.575527 | 1.1:+56613342 | MS.gene52979:CDS |
| GAGAATGAATTCATTGAGAG+AGG | 0.576531 | 1.1:+56607186 | MS.gene52979:CDS |
| CGGATAAAACAGTAACGGGT+CGG | 0.579151 | 1.1:-56612368 | None:intergenic |
| GCAGACAAAGTGATCAGCTA+TGG | 0.580371 | 1.1:+56613041 | MS.gene52979:CDS |
| GGGAAAGTATGTTTCGGCGA+TGG | 0.588314 | 1.1:+56612991 | MS.gene52979:CDS |
| TCAACTCATACCAGAATGGA+AGG | 0.589083 | 1.1:+56605025 | MS.gene52979:CDS |
| GGAAGTGCATCAATTTGGCT+AGG | 0.589297 | 1.1:-56612140 | None:intergenic |
| GTTACAAGTGTGCGAGACGG+TGG | 0.590064 | 1.1:+56612933 | MS.gene52979:intron |
| ATCCTAACTCCAGAAATACA+TGG | 0.591146 | 1.1:+56613146 | MS.gene52979:CDS |
| TTTCCCGCGTTCTCCAGCAC+GGG | 0.592357 | 1.1:+56607314 | MS.gene52979:CDS |
| AATGAGCATCTAAATAATGT+CGG | 0.593691 | 1.1:+56613566 | MS.gene52979:CDS |
| AGATTCAGGTGAGAGCTTGA+GGG | 0.596786 | 1.1:-56605186 | None:intergenic |
| AACCATAACCACGCCGACGG+AGG | 0.597102 | 1.1:+56605119 | MS.gene52979:CDS |
| AGAAATGGTGAAATTCTCAA+AGG | 0.597216 | 1.1:+56604992 | None:intergenic |
| GCTGTATGTTACTCTCGCCC+CGG | 0.599822 | 1.1:-56613020 | None:intergenic |
| TTCGGCGATGGTAGCAGCCG+GGG | 0.604999 | 1.1:+56613003 | MS.gene52979:CDS |
| AGTCTTAATCACTTCTGTAG+TGG | 0.608252 | 1.1:+56613072 | MS.gene52979:CDS |
| ATTTCGTGAATTCAGCAATG+AGG | 0.610454 | 1.1:+56607815 | MS.gene52979:CDS |
| TCTGTCTCTCGAAATGGTAA+CGG | 0.611018 | 1.1:-56613614 | None:intergenic |
| CAAAACCATAACCACGCCGA+CGG | 0.611427 | 1.1:+56605116 | MS.gene52979:CDS |
| TTCCAGAGTGACAAGTCTCA+GGG | 0.611456 | 1.1:-56612759 | None:intergenic |
| GAATCCCGTGCTGGAGAACG+CGG | 0.615381 | 1.1:-56607318 | None:intergenic |
| ATGGATGTAACCTATATATG+TGG | 0.617491 | 1.1:+56611964 | MS.gene52979:CDS |
| GAAAATGGAACCTCCTCCGT+CGG | 0.620048 | 1.1:-56605132 | None:intergenic |
| TCTTAGGCTAATGGACGAAG+TGG | 0.621800 | 1.1:+56611022 | MS.gene52979:CDS |
| GCACTTGAAGTTATTCGAAG+AGG | 0.623377 | 1.1:+56613402 | MS.gene52979:CDS |
| GTGAACCATTTAGCTAACAT+GGG | 0.634733 | 1.1:+56612971 | MS.gene52979:CDS |
| GCAATGAGAATTGATGTCCC+TGG | 0.637981 | 1.1:+56607868 | MS.gene52979:CDS |
| ATGCTTAAGTGATGTCCTTG+GGG | 0.641855 | 1.1:-56612027 | None:intergenic |
| AATCCCGTGCTGGAGAACGC+GGG | 0.646988 | 1.1:-56607317 | None:intergenic |
| TGGAACCTCCTCCGTCGGCG+TGG | 0.652071 | 1.1:-56605127 | None:intergenic |
| TGACACGGATAAAACAGTAA+CGG | 0.653458 | 1.1:-56612373 | None:intergenic |
| TTTGTTACAAGTGTGCGAGA+CGG | 0.662092 | 1.1:+56612930 | MS.gene52979:intron |
| AGATTATGTTGCGAATGACA+CGG | 0.666359 | 1.1:-56612388 | None:intergenic |
| AAATTATAAATGATAGACGA+CGG | 0.683872 | 1.1:+56607253 | MS.gene52979:CDS |
| GCGAGACGGTGGTTTGATGA+CGG | 0.685668 | 1.1:+56612944 | MS.gene52979:CDS |
| CACTACCTTAATGACAACAG+TGG | 0.704785 | 1.1:+56612070 | MS.gene52979:CDS |
| ACTCATACCAGAATGGAAGG+AGG | 0.716098 | 1.1:+56605028 | MS.gene52979:CDS |
| GCTTGATGATGAGCTAAACA+AGG | 0.730559 | 1.1:+56607140 | MS.gene52979:CDS |
| CAGAGTGACAAGTCTCAGGG+TGG | 0.731138 | 1.1:-56612756 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 56604996 | 56613649 | 56604996 | ID=MS.gene52979 |
| chr1.1 | mRNA | 56604996 | 56613649 | 56604996 | ID=MS.gene52979.t1;Parent=MS.gene52979 |
| chr1.1 | exon | 56604996 | 56605235 | 56604996 | ID=MS.gene52979.t1.exon1;Parent=MS.gene52979.t1 |
| chr1.1 | CDS | 56604996 | 56605235 | 56604996 | ID=cds.MS.gene52979.t1;Parent=MS.gene52979.t1 |
| chr1.1 | exon | 56606934 | 56607014 | 56606934 | ID=MS.gene52979.t1.exon2;Parent=MS.gene52979.t1 |
| chr1.1 | CDS | 56606934 | 56607014 | 56606934 | ID=cds.MS.gene52979.t1;Parent=MS.gene52979.t1 |
| chr1.1 | exon | 56607120 | 56607354 | 56607120 | ID=MS.gene52979.t1.exon3;Parent=MS.gene52979.t1 |
| chr1.1 | CDS | 56607120 | 56607354 | 56607120 | ID=cds.MS.gene52979.t1;Parent=MS.gene52979.t1 |
| chr1.1 | exon | 56607731 | 56608061 | 56607731 | ID=MS.gene52979.t1.exon4;Parent=MS.gene52979.t1 |
| chr1.1 | CDS | 56607731 | 56608061 | 56607731 | ID=cds.MS.gene52979.t1;Parent=MS.gene52979.t1 |
| chr1.1 | exon | 56608217 | 56608265 | 56608217 | ID=MS.gene52979.t1.exon5;Parent=MS.gene52979.t1 |
| chr1.1 | CDS | 56608217 | 56608265 | 56608217 | ID=cds.MS.gene52979.t1;Parent=MS.gene52979.t1 |
| chr1.1 | exon | 56610485 | 56610556 | 56610485 | ID=MS.gene52979.t1.exon6;Parent=MS.gene52979.t1 |
| chr1.1 | CDS | 56610485 | 56610556 | 56610485 | ID=cds.MS.gene52979.t1;Parent=MS.gene52979.t1 |
| chr1.1 | exon | 56611020 | 56611149 | 56611020 | ID=MS.gene52979.t1.exon7;Parent=MS.gene52979.t1 |
| chr1.1 | CDS | 56611020 | 56611149 | 56611020 | ID=cds.MS.gene52979.t1;Parent=MS.gene52979.t1 |
| chr1.1 | exon | 56611626 | 56611746 | 56611626 | ID=MS.gene52979.t1.exon8;Parent=MS.gene52979.t1 |
| chr1.1 | CDS | 56611626 | 56611746 | 56611626 | ID=cds.MS.gene52979.t1;Parent=MS.gene52979.t1 |
| chr1.1 | exon | 56611929 | 56612178 | 56611929 | ID=MS.gene52979.t1.exon9;Parent=MS.gene52979.t1 |
| chr1.1 | CDS | 56611929 | 56612178 | 56611929 | ID=cds.MS.gene52979.t1;Parent=MS.gene52979.t1 |
| chr1.1 | exon | 56612323 | 56612427 | 56612323 | ID=MS.gene52979.t1.exon10;Parent=MS.gene52979.t1 |
| chr1.1 | CDS | 56612323 | 56612427 | 56612323 | ID=cds.MS.gene52979.t1;Parent=MS.gene52979.t1 |
| chr1.1 | exon | 56612533 | 56612577 | 56612533 | ID=MS.gene52979.t1.exon11;Parent=MS.gene52979.t1 |
| chr1.1 | CDS | 56612533 | 56612577 | 56612533 | ID=cds.MS.gene52979.t1;Parent=MS.gene52979.t1 |
| chr1.1 | exon | 56612691 | 56612843 | 56612691 | ID=MS.gene52979.t1.exon12;Parent=MS.gene52979.t1 |
| chr1.1 | CDS | 56612691 | 56612843 | 56612691 | ID=cds.MS.gene52979.t1;Parent=MS.gene52979.t1 |
| chr1.1 | exon | 56612941 | 56613219 | 56612941 | ID=MS.gene52979.t1.exon13;Parent=MS.gene52979.t1 |
| chr1.1 | CDS | 56612941 | 56613219 | 56612941 | ID=cds.MS.gene52979.t1;Parent=MS.gene52979.t1 |
| chr1.1 | exon | 56613306 | 56613442 | 56613306 | ID=MS.gene52979.t1.exon14;Parent=MS.gene52979.t1 |
| chr1.1 | CDS | 56613306 | 56613442 | 56613306 | ID=cds.MS.gene52979.t1;Parent=MS.gene52979.t1 |
| chr1.1 | exon | 56613559 | 56613649 | 56613559 | ID=MS.gene52979.t1.exon15;Parent=MS.gene52979.t1 |
| chr1.1 | CDS | 56613559 | 56613649 | 56613559 | ID=cds.MS.gene52979.t1;Parent=MS.gene52979.t1 |
| Gene Sequence |
| Protein sequence |
