AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene53376


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53376.t1 MTR_8g087770 96.148 675 25 1 1 675 1 674 0.0 1319
MS.gene53376.t1 MTR_8g087750 81.994 672 111 5 6 672 11 677 0.0 1108
MS.gene53376.t1 MTR_8g087763 76.991 226 51 1 374 599 4 228 1.82e-124 373
MS.gene53376.t1 MTR_4g093750 37.846 325 180 9 67 376 35 352 2.87e-42 164
MS.gene53376.t1 MTR_4g093750 39.726 292 154 9 67 343 35 319 1.60e-41 162
MS.gene53376.t1 MTR_2g009690 36.624 314 187 6 63 366 40 351 2.00e-40 159
MS.gene53376.t1 MTR_1g032550 35.336 283 163 7 69 337 35 311 2.99e-33 135
MS.gene53376.t1 MTR_8g105580 35.461 282 163 6 69 337 35 310 1.53e-32 133
MS.gene53376.t1 MTR_8g105580 35.461 282 163 6 69 337 35 310 1.53e-32 133
MS.gene53376.t1 MTR_5g009150 42.473 186 105 2 69 252 35 220 8.01e-32 131
MS.gene53376.t1 MTR_7g451010 35.274 292 165 8 69 346 40 321 2.37e-31 130
MS.gene53376.t1 MTR_4g085860 75.641 78 18 1 206 282 2 79 7.47e-31 115
MS.gene53376.t1 MTR_8g099550 42.105 190 100 3 69 252 34 219 8.76e-31 128
MS.gene53376.t1 MTR_8g027675 41.709 199 105 5 69 264 34 224 1.29e-30 127
MS.gene53376.t1 MTR_8g009510 34.494 316 183 9 69 369 40 346 1.48e-30 127
MS.gene53376.t1 MTR_4g098920 34.483 319 179 10 69 369 34 340 2.07e-30 127
MS.gene53376.t1 MTR_6g045107 74.359 78 19 1 206 282 2 79 7.25e-29 110
MS.gene53376.t1 MTR_8g463270 30.303 231 142 7 54 269 27 253 1.73e-16 84.0
MS.gene53376.t1 MTR_8g009510 30.488 246 151 6 136 369 2 239 6.74e-16 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene53376.t1 AT1G60500 55.655 672 286 4 3 668 2 667 0.0 763
MS.gene53376.t1 AT1G60530 71.379 290 75 1 18 307 19 300 2.80e-142 417
MS.gene53376.t1 AT4G33650 30.023 443 266 11 35 452 29 452 1.12e-39 156
MS.gene53376.t1 AT4G33650 30.023 443 266 11 35 452 29 452 1.21e-39 156
MS.gene53376.t1 AT2G14120 33.234 337 207 6 25 346 1 334 1.47e-38 152
MS.gene53376.t1 AT2G14120 33.234 337 207 6 25 346 1 334 1.75e-38 153
MS.gene53376.t1 AT2G14120 33.234 337 207 6 25 346 1 334 1.83e-38 152
MS.gene53376.t1 AT2G14120 33.234 337 207 6 25 346 1 334 1.91e-38 153
MS.gene53376.t1 AT1G14830 34.892 278 171 5 69 337 35 311 3.98e-34 138
MS.gene53376.t1 AT3G60190 34.965 286 174 6 69 344 40 323 1.03e-31 131
MS.gene53376.t1 AT5G42080 33.762 311 192 7 69 369 34 340 1.85e-31 128
MS.gene53376.t1 AT5G42080 33.762 311 192 7 69 369 34 340 3.08e-31 129
MS.gene53376.t1 AT5G42080 33.762 311 192 7 69 369 34 340 3.94e-31 129
MS.gene53376.t1 AT5G42080 33.762 311 192 7 69 369 34 340 3.94e-31 129
MS.gene53376.t1 AT2G44590 32.986 288 175 7 69 345 35 315 7.82e-31 128
MS.gene53376.t1 AT3G61760 41.176 204 110 5 69 268 34 231 6.12e-30 124
MS.gene53376.t1 AT3G61760 41.176 204 110 5 69 268 34 231 7.49e-30 125
MS.gene53376.t1 AT3G61760 41.176 204 110 5 69 268 34 231 9.40e-30 125
MS.gene53376.t1 AT2G44590 29.861 288 167 8 69 345 35 298 2.18e-21 99.4
MS.gene53376.t1 AT2G44590 29.861 288 167 8 69 345 35 298 2.31e-21 99.0
MS.gene53376.t1 AT1G53140 27.731 238 156 7 44 269 36 269 5.87e-15 79.3

Find 128 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGAGTCTCCATCTATTTC+TGG 0.166668 4.1:+13022456 MS.gene53376:CDS
CATTGCTGGTATTCCTGTTT+TGG 0.205580 4.1:+13021459 MS.gene53376:CDS
GCAGTTCTTGGCATGAAATT+TGG 0.208693 4.1:-13021856 None:intergenic
TTAGTACTTGTGAGTCTATT+AGG 0.242558 4.1:+13021209 MS.gene53376:CDS
ATCAAGTTTGTTTGCCTTTG+TGG 0.244719 4.1:-13020573 None:intergenic
CTTGAGGAAGCTAAGTTAAT+TGG 0.255531 4.1:+13021829 MS.gene53376:CDS
TGACAATGTGTGGAGCTATT+TGG 0.298324 4.1:+13021939 MS.gene53376:CDS
TCTGAGAAAGATTCTTCTAA+TGG 0.298751 4.1:+13021663 MS.gene53376:CDS
AATGTTAGAAAAGCAGTTCT+TGG 0.299019 4.1:-13021868 None:intergenic
ATCTGATCATAAATGTTATC+AGG 0.304162 4.1:-13021112 None:intergenic
TAACATTTATGATCAGATTA+AGG 0.317964 4.1:+13021117 MS.gene53376:CDS
CTTCCAACCATTGTTGTTGT+TGG 0.322456 4.1:+13020755 MS.gene53376:CDS
TGATGATGTTAACATTGGTT+TGG 0.323376 4.1:+13021327 MS.gene53376:CDS
GCCTGCCAATTTGACTTCAT+TGG 0.333846 4.1:+13021591 MS.gene53376:CDS
TCCACAGCCAGAGCTTGTTT+TGG 0.338480 4.1:+13020895 MS.gene53376:CDS
TTCATTTCTTGCTTCTTCAT+AGG 0.344245 4.1:-13021386 None:intergenic
AGAGACTGTGGCCAACATTA+TGG 0.346194 4.1:+13022527 MS.gene53376:CDS
CTTACTATGGTTGATCTTCC+AGG 0.352429 4.1:+13021061 MS.gene53376:CDS
ATCTGCCAATGAAGTCAAAT+TGG 0.360580 4.1:-13021596 None:intergenic
CAAGGGTACCTTTGGTTATG+AGG 0.366182 4.1:+13020855 MS.gene53376:CDS
CAATGCATTTGTTTATCATC+AGG 0.370755 4.1:-13021703 None:intergenic
TGCAAACTATTACCAGTTGC+AGG 0.374084 4.1:+13021996 MS.gene53376:CDS
TGGAGTTCCTGATCTTACTA+TGG 0.379945 4.1:+13021048 MS.gene53376:CDS
ACTTTCTCCAACAAACCTTC+AGG 0.384947 4.1:-13021298 None:intergenic
CTGAGAAAGATTCTTCTAAT+GGG 0.390787 4.1:+13021664 MS.gene53376:CDS
GATGATGTTAACATTGGTTT+GGG 0.391771 4.1:+13021328 MS.gene53376:CDS
TTCAAAATAATACTCTCTTC+AGG 0.392099 4.1:-13021163 None:intergenic
GCTCTGGCTGTGGAAGTAAA+TGG 0.394731 4.1:-13020886 None:intergenic
TTCCATTAGGAAATCCTTTG+TGG 0.394982 4.1:-13021794 None:intergenic
ATAACTCGTGTTCCTGTTCA+TGG 0.396246 4.1:+13021085 MS.gene53376:CDS
TTGATCTTCTTAATTATCTC+AGG 0.396848 4.1:-13021529 None:intergenic
TCACAGATAGTTGATAAAAC+TGG 0.398319 4.1:+13021235 MS.gene53376:CDS
AGGCAAGATTAATTGCCTAT+TGG 0.399341 4.1:+13022304 MS.gene53376:CDS
TCCGATCAATGTGTTGAATC+AGG 0.406853 4.1:+13022269 MS.gene53376:CDS
AAGATTGACAAATCCATTGC+TGG 0.411898 4.1:+13021445 MS.gene53376:CDS
GAATCAGGCCTTTGACTTGA+AGG 0.413968 4.1:+13022284 MS.gene53376:CDS
ATGGACAGGATTGGAGTCTA+TGG 0.415221 4.1:+13022546 MS.gene53376:CDS
TTGATGCTCTTGAAAATCTA+AGG 0.416842 4.1:+13020702 MS.gene53376:CDS
TTGCAATCCGGAGTACTTGC+AGG 0.423704 4.1:+13022122 MS.gene53376:CDS
AATTTGTACAAGGGTACCTT+TGG 0.424069 4.1:+13020847 MS.gene53376:CDS
TCAAGTACTGTGAAGCTTGA+AGG 0.424080 4.1:+13022210 MS.gene53376:CDS
TGTCTCTTACCAGAAATAGA+TGG 0.425419 4.1:-13022465 None:intergenic
GGACTACGATCTCTTCCATT+AGG 0.434291 4.1:-13021807 None:intergenic
TGTGATGCAAGCTGTTGATA+TGG 0.436114 4.1:+13022080 MS.gene53376:CDS
TAAATCACCTGAAGGTTTGT+TGG 0.440077 4.1:+13021291 MS.gene53376:CDS
TTTGGAAAGGGTTGTTATCT+CGG 0.442091 4.1:+13021957 MS.gene53376:CDS
ACAGCCACTGAGGAGCTTGC+TGG 0.443000 4.1:+13020974 MS.gene53376:CDS
CCTCAGCACAATCTTCCAAT+AGG 0.443004 4.1:-13022319 None:intergenic
TGGGGTGTTGGAAATCCCTT+TGG 0.443439 4.1:-13021002 None:intergenic
TTCCACAAAGGATTTCCTAA+TGG 0.449900 4.1:+13021792 MS.gene53376:CDS
ACAAGCTTCTGAGCCAAAAC+AGG 0.453897 4.1:-13021472 None:intergenic
ACATTGTCAACAAAATTAGT+TGG 0.454264 4.1:-13021925 None:intergenic
GCATTGTACTGCTCGGTTAG+TGG 0.455271 4.1:+13021720 MS.gene53376:CDS
TCATTATAAGAAGATACAAT+TGG 0.458646 4.1:-13020662 None:intergenic
TACGAGTAGCAACCTGCAAC+TGG 0.461514 4.1:-13022008 None:intergenic
ACAATTGGTGCAACAGATAG+AGG 0.467988 4.1:-13020647 None:intergenic
TCTTTACTATCAAAGTCAGT+GGG 0.470875 4.1:-13021021 None:intergenic
TGATACCAGCTAATGATTCA+AGG 0.474056 4.1:-13020805 None:intergenic
GAGCTTGCTGGCACTGCCAA+AGG 0.478600 4.1:+13020986 MS.gene53376:CDS
GTTGTTGGAGATCAATCATC+TGG 0.485196 4.1:+13020770 MS.gene53376:CDS
TTATACTCCAAAACAAGCTC+TGG 0.492061 4.1:-13020902 None:intergenic
TATCAAAGTCAGTGGGGTGT+TGG 0.492352 4.1:-13021014 None:intergenic
TTATCAGGTTGACCATGAAC+AGG 0.495576 4.1:-13021097 None:intergenic
GCGTCTCAACATTGCTAAAG+AGG 0.501157 4.1:+13020724 MS.gene53376:CDS
AGCTTGCATCACATGTTGAA+TGG 0.501675 4.1:-13022070 None:intergenic
GCCAATGAAGTCAAATTGGC+AGG 0.504122 4.1:-13021592 None:intergenic
CACGGATTACACTTGCAATC+CGG 0.511102 4.1:+13022110 MS.gene53376:CDS
TTTGTGTGAGAAATCGCATT+GGG 0.515555 4.1:+13021356 MS.gene53376:CDS
GTAAGAGACAAAGTTTAAGC+AGG 0.516534 4.1:+13022478 MS.gene53376:CDS
AATGCATTTGTTTATCATCA+GGG 0.517273 4.1:-13021702 None:intergenic
TCCAATCCTGTCCATAATGT+TGG 0.522411 4.1:-13022538 None:intergenic
AGATCAACCATAGTAAGATC+AGG 0.522883 4.1:-13021055 None:intergenic
AGTGTCCTTGAATCATTAGC+TGG 0.523168 4.1:+13020800 MS.gene53376:CDS
TCCAAAACAAGCTCTGGCTG+TGG 0.524796 4.1:-13020896 None:intergenic
GGTGCAACAGATAGAGGTTG+AGG 0.525331 4.1:-13020641 None:intergenic
TAATCTTGCCTTCAAGTCAA+AGG 0.534214 4.1:-13022292 None:intergenic
GCCAACATTATGGACAGGAT+TGG 0.534644 4.1:+13022537 MS.gene53376:CDS
GCCTGATTCAACACATTGAT+CGG 0.536471 4.1:-13022270 None:intergenic
AAGGAGATTTGTAATGAACT+TGG 0.538785 4.1:+13022411 MS.gene53376:CDS
ATCAGCTTGCCACGTGGACA+AGG 0.540401 4.1:+13020824 MS.gene53376:CDS
TCAGATTAAGGATATTATCA+TGG 0.543580 4.1:+13021129 MS.gene53376:CDS
TTATATTCCTGCAAGTACTC+CGG 0.543933 4.1:-13022129 None:intergenic
AGCTTGCTGGCACTGCCAAA+GGG 0.547647 4.1:+13020987 MS.gene53376:CDS
ATGTGTGGAGCTATTTGGAA+AGG 0.549884 4.1:+13021944 MS.gene53376:CDS
AACAAATGCATTGTACTGCT+CGG 0.550416 4.1:+13021713 MS.gene53376:CDS
TCTCCAACAACAACAATGGT+TGG 0.551269 4.1:-13020758 None:intergenic
GAGATTTGTAATGAACTTGG+TGG 0.560761 4.1:+13022414 MS.gene53376:CDS
ACTTTGATAGTAAAGAAGAA+TGG 0.569006 4.1:+13021028 MS.gene53376:CDS
TAGTTGATAAAACTGGTTTG+AGG 0.569831 4.1:+13021242 MS.gene53376:CDS
GTACTGCTCGGTTAGTGGAG+AGG 0.571484 4.1:+13021725 MS.gene53376:CDS
CTGTGGCCAACATTATGGAC+AGG 0.573065 4.1:+13022532 MS.gene53376:CDS
GACATTAGCTGTTGTAACAA+AGG 0.576294 4.1:+13021264 MS.gene53376:CDS
ATTACTTCAGAGAAAAGTGA+AGG 0.577066 4.1:+13021888 MS.gene53376:CDS
AGTGCCAGCAAGCTCCTCAG+TGG 0.578957 4.1:-13020978 None:intergenic
TTCTTTACTATCAAAGTCAG+TGG 0.579933 4.1:-13021022 None:intergenic
CGTCTCAACATTGCTAAAGA+GGG 0.585949 4.1:+13020725 MS.gene53376:CDS
GTGGACAAGGAATTTGTACA+AGG 0.592993 4.1:+13020837 MS.gene53376:CDS
CAGTGTTGAGAGGCTGCTTG+AGG 0.594487 4.1:+13022437 MS.gene53376:CDS
GGAAGAGATCGTAGTCCTTG+AGG 0.596070 4.1:+13021813 MS.gene53376:CDS
ATTGGAAGATTGTGCTGAGG+AGG 0.597029 4.1:+13022322 MS.gene53376:CDS
CAAACAACTTTCAACTGATG+AGG 0.601066 4.1:+13020928 MS.gene53376:CDS
ACTGTGAAGCTTGAAGGAGT+TGG 0.602736 4.1:+13022216 MS.gene53376:CDS
TGTGAGAAATCGCATTGGGG+AGG 0.608396 4.1:+13021360 MS.gene53376:CDS
GGTTGCTACTCGTAGAGCTG+TGG 0.612719 4.1:+13022017 MS.gene53376:CDS
ACAGGAACACGAGTTATACC+TGG 0.615115 4.1:-13021079 None:intergenic
TGTGTGGAGCTATTTGGAAA+GGG 0.616400 4.1:+13021945 MS.gene53376:CDS
CAAAACAGGAATACCAGCAA+TGG 0.616931 4.1:-13021458 None:intergenic
CAATTAACTTAGCTTCCTCA+AGG 0.618556 4.1:-13021828 None:intergenic
GATTAACAATGATCTGCAGA+AGG 0.625104 4.1:+13022392 MS.gene53376:CDS
ACTGCTGATGATGTTAACAT+TGG 0.625783 4.1:+13021322 MS.gene53376:CDS
AAGGCTGATAAATCACCTGA+AGG 0.627415 4.1:+13021283 MS.gene53376:CDS
TTGATCTCCAACAACAACAA+TGG 0.648908 4.1:-13020762 None:intergenic
TAGAGAAAGCAAAGAGACTG+TGG 0.654791 4.1:+13022515 MS.gene53376:CDS
GTACAAATTCCTTGTCCACG+TGG 0.660130 4.1:-13020833 None:intergenic
TTACTTCAGAGAAAAGTGAA+GGG 0.662697 4.1:+13021889 MS.gene53376:CDS
TGTTGATATGGAGAAGCACA+CGG 0.665028 4.1:+13022092 MS.gene53376:CDS
AACTTGGTGGCAGTGTTGAG+AGG 0.665158 4.1:+13022427 MS.gene53376:CDS
GTTTGTGTGAGAAATCGCAT+TGG 0.677044 4.1:+13021355 MS.gene53376:CDS
TGCTATAAATACAGCCACTG+AGG 0.694192 4.1:+13020964 MS.gene53376:CDS
CTTTACTATCAAAGTCAGTG+GGG 0.697240 4.1:-13021020 None:intergenic
TGCTGAAAGTGATTCCACAA+AGG 0.697479 4.1:+13021780 MS.gene53376:CDS
GCTGGTATCAGCTTGCCACG+TGG 0.699523 4.1:+13020818 MS.gene53376:CDS
GTTGATCATCAACATCAACA+TGG 0.706155 4.1:-13020619 None:intergenic
TGGAAACAAGAGTTCCACAA+AGG 0.707464 4.1:+13020559 MS.gene53376:CDS
CCTATTGGAAGATTGTGCTG+AGG 0.716472 4.1:+13022319 MS.gene53376:CDS
TGGACAAGGAATTTGTACAA+GGG 0.728664 4.1:+13020838 MS.gene53376:CDS
TTGTGTGAGAAATCGCATTG+GGG 0.740526 4.1:+13021357 MS.gene53376:CDS
ACTGGTAATAGTTTGCAGAG+TGG 0.741343 4.1:-13021990 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACATTTATGATCAGATTA+AGG + chr4.1:13021117-13021136 MS.gene53376:CDS 20.0%
!! TCATTATAAGAAGATACAAT+TGG - chr4.1:13020665-13020684 None:intergenic 20.0%
!!! AGCATTTTTGAAAAAAGTTT+TGG + chr4.1:13022173-13022192 MS.gene53376:CDS 20.0%
! AATGCATTTGTTTATCATCA+GGG - chr4.1:13021705-13021724 None:intergenic 25.0%
! ACATTGTCAACAAAATTAGT+TGG - chr4.1:13021928-13021947 None:intergenic 25.0%
! ATCTGATCATAAATGTTATC+AGG - chr4.1:13021115-13021134 None:intergenic 25.0%
! TCAGATTAAGGATATTATCA+TGG + chr4.1:13021129-13021148 MS.gene53376:CDS 25.0%
! TTCAAAATAATACTCTCTTC+AGG - chr4.1:13021166-13021185 None:intergenic 25.0%
! TTGATCTTCTTAATTATCTC+AGG - chr4.1:13021532-13021551 None:intergenic 25.0%
!! ACTTTGATAGTAAAGAAGAA+TGG + chr4.1:13021028-13021047 MS.gene53376:CDS 25.0%
AAGGAGATTTGTAATGAACT+TGG + chr4.1:13022411-13022430 MS.gene53376:CDS 30.0%
AATGTTAGAAAAGCAGTTCT+TGG - chr4.1:13021871-13021890 None:intergenic 30.0%
ATTACTTCAGAGAAAAGTGA+AGG + chr4.1:13021888-13021907 MS.gene53376:CDS 30.0%
CAATGCATTTGTTTATCATC+AGG - chr4.1:13021706-13021725 None:intergenic 30.0%
CTGAGAAAGATTCTTCTAAT+GGG + chr4.1:13021664-13021683 MS.gene53376:CDS 30.0%
TCTGAGAAAGATTCTTCTAA+TGG + chr4.1:13021663-13021682 MS.gene53376:CDS 30.0%
TCTTTACTATCAAAGTCAGT+GGG - chr4.1:13021024-13021043 None:intergenic 30.0%
TTACTTCAGAGAAAAGTGAA+GGG + chr4.1:13021889-13021908 MS.gene53376:CDS 30.0%
TTAGTACTTGTGAGTCTATT+AGG + chr4.1:13021209-13021228 MS.gene53376:CDS 30.0%
TTCATTTCTTGCTTCTTCAT+AGG - chr4.1:13021389-13021408 None:intergenic 30.0%
TTCTTTACTATCAAAGTCAG+TGG - chr4.1:13021025-13021044 None:intergenic 30.0%
TTGATGCTCTTGAAAATCTA+AGG + chr4.1:13020702-13020721 MS.gene53376:CDS 30.0%
! CTAATTTTGTTGACAATGTG+TGG + chr4.1:13021929-13021948 MS.gene53376:CDS 30.0%
! TGATGATGTTAACATTGGTT+TGG + chr4.1:13021327-13021346 MS.gene53376:CDS 30.0%
!! GATGATGTTAACATTGGTTT+GGG + chr4.1:13021328-13021347 MS.gene53376:CDS 30.0%
!! TAGTTGATAAAACTGGTTTG+AGG + chr4.1:13021242-13021261 MS.gene53376:CDS 30.0%
!! TCACAGATAGTTGATAAAAC+TGG + chr4.1:13021235-13021254 MS.gene53376:CDS 30.0%
AACAAATGCATTGTACTGCT+CGG + chr4.1:13021713-13021732 MS.gene53376:CDS 35.0%
AAGATTGACAAATCCATTGC+TGG + chr4.1:13021445-13021464 MS.gene53376:CDS 35.0%
AGATCAACCATAGTAAGATC+AGG - chr4.1:13021058-13021077 None:intergenic 35.0%
AGGCAAGATTAATTGCCTAT+TGG + chr4.1:13022304-13022323 MS.gene53376:CDS 35.0%
ATCTGCCAATGAAGTCAAAT+TGG - chr4.1:13021599-13021618 None:intergenic 35.0%
CAAACAACTTTCAACTGATG+AGG + chr4.1:13020928-13020947 MS.gene53376:CDS 35.0%
CAATTAACTTAGCTTCCTCA+AGG - chr4.1:13021831-13021850 None:intergenic 35.0%
CTTGAGGAAGCTAAGTTAAT+TGG + chr4.1:13021829-13021848 MS.gene53376:CDS 35.0%
CTTTACTATCAAAGTCAGTG+GGG - chr4.1:13021023-13021042 None:intergenic 35.0%
GACATTAGCTGTTGTAACAA+AGG + chr4.1:13021264-13021283 MS.gene53376:CDS 35.0%
GAGATTTGTAATGAACTTGG+TGG + chr4.1:13022414-13022433 MS.gene53376:CDS 35.0%
GATTAACAATGATCTGCAGA+AGG + chr4.1:13022392-13022411 MS.gene53376:CDS 35.0%
GTAAGAGACAAAGTTTAAGC+AGG + chr4.1:13022478-13022497 MS.gene53376:CDS 35.0%
GTTGATCATCAACATCAACA+TGG - chr4.1:13020622-13020641 None:intergenic 35.0%
TAAATCACCTGAAGGTTTGT+TGG + chr4.1:13021291-13021310 MS.gene53376:CDS 35.0%
TAATCTTGCCTTCAAGTCAA+AGG - chr4.1:13022295-13022314 None:intergenic 35.0%
TGATACCAGCTAATGATTCA+AGG - chr4.1:13020808-13020827 None:intergenic 35.0%
TGGACAAGGAATTTGTACAA+GGG + chr4.1:13020838-13020857 MS.gene53376:CDS 35.0%
TGTCTCTTACCAGAAATAGA+TGG - chr4.1:13022468-13022487 None:intergenic 35.0%
TTATACTCCAAAACAAGCTC+TGG - chr4.1:13020905-13020924 None:intergenic 35.0%
TTATATTCCTGCAAGTACTC+CGG - chr4.1:13022132-13022151 None:intergenic 35.0%
TTCCACAAAGGATTTCCTAA+TGG + chr4.1:13021792-13021811 MS.gene53376:CDS 35.0%
TTCCATTAGGAAATCCTTTG+TGG - chr4.1:13021797-13021816 None:intergenic 35.0%
TTGATCTCCAACAACAACAA+TGG - chr4.1:13020765-13020784 None:intergenic 35.0%
TTTGGAAAGGGTTGTTATCT+CGG + chr4.1:13021957-13021976 MS.gene53376:CDS 35.0%
TTTGTGTGAGAAATCGCATT+GGG + chr4.1:13021356-13021375 MS.gene53376:CDS 35.0%
! ACTGCTGATGATGTTAACAT+TGG + chr4.1:13021322-13021341 MS.gene53376:CDS 35.0%
! ATCAAGTTTGTTTGCCTTTG+TGG - chr4.1:13020576-13020595 None:intergenic 35.0%
!! AATTTGTACAAGGGTACCTT+TGG + chr4.1:13020847-13020866 MS.gene53376:CDS 35.0%
!!! GAGCTTGTTTTGGAGTATAA+TGG + chr4.1:13020905-13020924 MS.gene53376:CDS 35.0%
AAGGCTGATAAATCACCTGA+AGG + chr4.1:13021283-13021302 MS.gene53376:CDS 40.0%
ACAATTGGTGCAACAGATAG+AGG - chr4.1:13020650-13020669 None:intergenic 40.0%
ACTTTCTCCAACAAACCTTC+AGG - chr4.1:13021301-13021320 None:intergenic 40.0%
AGCTTGCATCACATGTTGAA+TGG - chr4.1:13022073-13022092 None:intergenic 40.0%
AGTGTCCTTGAATCATTAGC+TGG + chr4.1:13020800-13020819 MS.gene53376:CDS 40.0%
ATAACTCGTGTTCCTGTTCA+TGG + chr4.1:13021085-13021104 MS.gene53376:CDS 40.0%
ATGTGTGGAGCTATTTGGAA+AGG + chr4.1:13021944-13021963 MS.gene53376:CDS 40.0%
CAAAACAGGAATACCAGCAA+TGG - chr4.1:13021461-13021480 None:intergenic 40.0%
CGTCTCAACATTGCTAAAGA+GGG + chr4.1:13020725-13020744 MS.gene53376:CDS 40.0%
CTTACTATGGTTGATCTTCC+AGG + chr4.1:13021061-13021080 MS.gene53376:CDS 40.0%
GCAGTTCTTGGCATGAAATT+TGG - chr4.1:13021859-13021878 None:intergenic 40.0%
GCCTGATTCAACACATTGAT+CGG - chr4.1:13022273-13022292 None:intergenic 40.0%
GTGGACAAGGAATTTGTACA+AGG + chr4.1:13020837-13020856 MS.gene53376:CDS 40.0%
GTTGTTGGAGATCAATCATC+TGG + chr4.1:13020770-13020789 MS.gene53376:CDS 40.0%
GTTTGTGTGAGAAATCGCAT+TGG + chr4.1:13021355-13021374 MS.gene53376:CDS 40.0%
TAGAGAAAGCAAAGAGACTG+TGG + chr4.1:13022515-13022534 MS.gene53376:CDS 40.0%
TCCAATCCTGTCCATAATGT+TGG - chr4.1:13022541-13022560 None:intergenic 40.0%
TCCGATCAATGTGTTGAATC+AGG + chr4.1:13022269-13022288 MS.gene53376:CDS 40.0%
TCTCCAACAACAACAATGGT+TGG - chr4.1:13020761-13020780 None:intergenic 40.0%
TGACAATGTGTGGAGCTATT+TGG + chr4.1:13021939-13021958 MS.gene53376:CDS 40.0%
TGCAAACTATTACCAGTTGC+AGG + chr4.1:13021996-13022015 MS.gene53376:CDS 40.0%
TGCTATAAATACAGCCACTG+AGG + chr4.1:13020964-13020983 MS.gene53376:CDS 40.0%
TGCTGAAAGTGATTCCACAA+AGG + chr4.1:13021780-13021799 MS.gene53376:CDS 40.0%
TGGAAACAAGAGTTCCACAA+AGG + chr4.1:13020559-13020578 MS.gene53376:CDS 40.0%
TGGAGTTCCTGATCTTACTA+TGG + chr4.1:13021048-13021067 MS.gene53376:CDS 40.0%
TGTGATGCAAGCTGTTGATA+TGG + chr4.1:13022080-13022099 MS.gene53376:CDS 40.0%
TGTGTGGAGCTATTTGGAAA+GGG + chr4.1:13021945-13021964 MS.gene53376:CDS 40.0%
TTGTGTGAGAAATCGCATTG+GGG + chr4.1:13021357-13021376 MS.gene53376:CDS 40.0%
! ACTGGTAATAGTTTGCAGAG+TGG - chr4.1:13021993-13022012 None:intergenic 40.0%
! CATTGCTGGTATTCCTGTTT+TGG + chr4.1:13021459-13021478 MS.gene53376:CDS 40.0%
! CTTCCAACCATTGTTGTTGT+TGG + chr4.1:13020755-13020774 MS.gene53376:CDS 40.0%
! TCAAGTACTGTGAAGCTTGA+AGG + chr4.1:13022210-13022229 MS.gene53376:CDS 40.0%
! TGTTGATATGGAGAAGCACA+CGG + chr4.1:13022092-13022111 MS.gene53376:CDS 40.0%
! TTTTGCAGCCTCATAACCAA+AGG - chr4.1:13020866-13020885 None:intergenic 40.0%
!! TTATCAGGTTGACCATGAAC+AGG - chr4.1:13021100-13021119 None:intergenic 40.0%
!!! TTTTCAAGAGCATCAAGCAC+TGG - chr4.1:13020698-13020717 None:intergenic 40.0%
ACAAGCTTCTGAGCCAAAAC+AGG - chr4.1:13021475-13021494 None:intergenic 45.0%
ACAGGAACACGAGTTATACC+TGG - chr4.1:13021082-13021101 None:intergenic 45.0%
ACTGTGAAGCTTGAAGGAGT+TGG + chr4.1:13022216-13022235 MS.gene53376:CDS 45.0%
AGAGACTGTGGCCAACATTA+TGG + chr4.1:13022527-13022546 MS.gene53376:CDS 45.0%
ATGGACAGGATTGGAGTCTA+TGG + chr4.1:13022546-13022565 MS.gene53376:CDS 45.0%
ATTGGAAGATTGTGCTGAGG+AGG + chr4.1:13022322-13022341 MS.gene53376:CDS 45.0%
CCTATTGGAAGATTGTGCTG+AGG + chr4.1:13022319-13022338 MS.gene53376:CDS 45.0%
CCTCAGCACAATCTTCCAAT+AGG - chr4.1:13022322-13022341 None:intergenic 45.0%
GAGGAGTCTCCATCTATTTC+TGG + chr4.1:13022456-13022475 MS.gene53376:CDS 45.0%
GCCAACATTATGGACAGGAT+TGG + chr4.1:13022537-13022556 MS.gene53376:CDS 45.0%
GCCAATGAAGTCAAATTGGC+AGG - chr4.1:13021595-13021614 None:intergenic 45.0%
GCGTCTCAACATTGCTAAAG+AGG + chr4.1:13020724-13020743 MS.gene53376:CDS 45.0%
GGACTACGATCTCTTCCATT+AGG - chr4.1:13021810-13021829 None:intergenic 45.0%
GTACAAATTCCTTGTCCACG+TGG - chr4.1:13020836-13020855 None:intergenic 45.0%
TATCAAAGTCAGTGGGGTGT+TGG - chr4.1:13021017-13021036 None:intergenic 45.0%
! CACGGATTACACTTGCAATC+CGG + chr4.1:13022110-13022129 MS.gene53376:CDS 45.0%
! GCCTGCCAATTTGACTTCAT+TGG + chr4.1:13021591-13021610 MS.gene53376:CDS 45.0%
!! CAAGGGTACCTTTGGTTATG+AGG + chr4.1:13020855-13020874 MS.gene53376:CDS 45.0%
!! GAATCAGGCCTTTGACTTGA+AGG + chr4.1:13022284-13022303 MS.gene53376:CDS 45.0%
CTGTGGCCAACATTATGGAC+AGG + chr4.1:13022532-13022551 MS.gene53376:CDS 50.0%
GCATTGTACTGCTCGGTTAG+TGG + chr4.1:13021720-13021739 MS.gene53376:CDS 50.0%
GCTCTGGCTGTGGAAGTAAA+TGG - chr4.1:13020889-13020908 None:intergenic 50.0%
GGAAGAGATCGTAGTCCTTG+AGG + chr4.1:13021813-13021832 MS.gene53376:CDS 50.0%
GGTGCAACAGATAGAGGTTG+AGG - chr4.1:13020644-13020663 None:intergenic 50.0%
TACGAGTAGCAACCTGCAAC+TGG - chr4.1:13022011-13022030 None:intergenic 50.0%
TGTGAGAAATCGCATTGGGG+AGG + chr4.1:13021360-13021379 MS.gene53376:CDS 50.0%
! AACTTGGTGGCAGTGTTGAG+AGG + chr4.1:13022427-13022446 MS.gene53376:CDS 50.0%
! TCCAAAACAAGCTCTGGCTG+TGG - chr4.1:13020899-13020918 None:intergenic 50.0%
! TTGCAATCCGGAGTACTTGC+AGG + chr4.1:13022122-13022141 MS.gene53376:CDS 50.0%
!! TCCACAGCCAGAGCTTGTTT+TGG + chr4.1:13020895-13020914 MS.gene53376:CDS 50.0%
!! TGGGGTGTTGGAAATCCCTT+TGG - chr4.1:13021005-13021024 None:intergenic 50.0%
ATCAGCTTGCCACGTGGACA+AGG + chr4.1:13020824-13020843 MS.gene53376:CDS 55.0%
GGTTGCTACTCGTAGAGCTG+TGG + chr4.1:13022017-13022036 MS.gene53376:CDS 55.0%
GTACTGCTCGGTTAGTGGAG+AGG + chr4.1:13021725-13021744 MS.gene53376:CDS 55.0%
! CAGTGTTGAGAGGCTGCTTG+AGG + chr4.1:13022437-13022456 MS.gene53376:CDS 55.0%
!! AGCTTGCTGGCACTGCCAAA+GGG + chr4.1:13020987-13021006 MS.gene53376:CDS 55.0%
ACAGCCACTGAGGAGCTTGC+TGG + chr4.1:13020974-13020993 MS.gene53376:CDS 60.0%
AGTGCCAGCAAGCTCCTCAG+TGG - chr4.1:13020981-13021000 None:intergenic 60.0%
GCTGGTATCAGCTTGCCACG+TGG + chr4.1:13020818-13020837 MS.gene53376:CDS 60.0%
!! GAGCTTGCTGGCACTGCCAA+AGG + chr4.1:13020986-13021005 MS.gene53376:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 13020551 13022578 13020551 ID=MS.gene53376
chr4.1 mRNA 13020551 13022578 13020551 ID=MS.gene53376.t1;Parent=MS.gene53376
chr4.1 exon 13020551 13022578 13020551 ID=MS.gene53376.t1.exon1;Parent=MS.gene53376.t1
chr4.1 CDS 13020551 13022578 13020551 ID=cds.MS.gene53376.t1;Parent=MS.gene53376.t1
Gene Sequence

>MS.gene53376

ATGACAATTGGAAACAAGAGTTCCACAAAGGCAAACAAACTTGATGAATCATCATCACTTGCATTAGTCCATGTTGATGTTGATGATCAACCTCAACCTCTATCTGTTGCACCAATTGTATCTTCTTATAATGAGAAGATACGTCCAGTGCTTGATGCTCTTGAAAATCTAAGGCGTCTCAACATTGCTAAAGAGGGAATTCAGCTTCCAACCATTGTTGTTGTTGGAGATCAATCATCTGGAAAGTCTAGTGTCCTTGAATCATTAGCTGGTATCAGCTTGCCACGTGGACAAGGAATTTGTACAAGGGTACCTTTGGTTATGAGGCTGCAAAACCATTTACTTCCACAGCCAGAGCTTGTTTTGGAGTATAATGGCAAACAACTTTCAACTGATGAGGAAAATGTATCTGATGCTATAAATACAGCCACTGAGGAGCTTGCTGGCACTGCCAAAGGGATTTCCAACACCCCACTGACTTTGATAGTAAAGAAGAATGGAGTTCCTGATCTTACTATGGTTGATCTTCCAGGTATAACTCGTGTTCCTGTTCATGGTCAACCTGATAACATTTATGATCAGATTAAGGATATTATCATGGAGTATATAACTCCTGAAGAGAGTATTATTTTGAATGTGCTCTCTGCTACTGTCGATTTTAGTACTTGTGAGTCTATTAGGATGTCACAGATAGTTGATAAAACTGGTTTGAGGACATTAGCTGTTGTAACAAAGGCTGATAAATCACCTGAAGGTTTGTTGGAGAAAGTAACTGCTGATGATGTTAACATTGGTTTGGGCTATGTTTGTGTGAGAAATCGCATTGGGGAGGAATCCTATGAAGAAGCAAGAAATGAAGAACAGAAGTTGTTTGAGTCTCACTCACTTCTTTCTAAGATTGACAAATCCATTGCTGGTATTCCTGTTTTGGCTCAGAAGCTTGTTAATGTGCAAGCTATGATTATTTCAAAAACTTTGCCTGAGATAATTAAGAAGATCAATGAGAAGCTTTATAATAGTGTACATGAGTTGAAGACTTTGCCTGCCAATTTGACTTCATTGGCAGATGCTATGTCTGCTTTTCTGCATATTGTTTCTCTGTCAAGAGATTCTCTGAGAAAGATTCTTCTAATGGGAGAATTTGAAGAATACCCTGATGATAAACAAATGCATTGTACTGCTCGGTTAGTGGAGAGGTTGAATTCATATGCAAGTGATCTTCAAAACTGTGCTGAAAGTGATTCCACAAAGGATTTCCTAATGGAAGAGATCGTAGTCCTTGAGGAAGCTAAGTTAATTGGTCTTCCAAATTTCATGCCAAGAACTGCTTTTCTAACATTACTTCAGAGAAAAGTGAAGGGCATTTCTCATATGCCAACTAATTTTGTTGACAATGTGTGGAGCTATTTGGAAAGGGTTGTTATCTCGGTCATGAATCGCCACTCTGCAAACTATTACCAGTTGCAGGTTGCTACTCGTAGAGCTGTGGAGCACGTTATTGCTAAGAAGAAGAGCAATTCCATTCAACATGTGATGCAAGCTGTTGATATGGAGAAGCACACGGATTACACTTGCAATCCGGAGTACTTGCAGGAATATAACGAGCTGATGTCTTATCAAGAAGCATTTTTGAAAAAAGTTTTGGATGATGATCGATGTTCAAGTACTGTGAAGCTTGAAGGAGTTGGTAACATTGAAGTTAATCATCTGATAGAGTATCCGATCAATGTGTTGAATCAGGCCTTTGACTTGAAGGCAAGATTAATTGCCTATTGGAAGATTGTGCTGAGGAGGCTCATTGATAGTATTGCTTTGCATTTGATGCTAAGCATCAATGAACTGATTAACAATGATCTGCAGAAGGAGATTTGTAATGAACTTGGTGGCAGTGTTGAGAGGCTGCTTGAGGAGTCTCCATCTATTTCTGGTAAGAGACAAAGTTTAAGCAGGAGTGTGAAAGTTCTTAGAGAAAGCAAAGAGACTGTGGCCAACATTATGGACAGGATTGGAGTCTATGGTAATAACTAG

Protein sequence

>MS.gene53376.t1

MTIGNKSSTKANKLDESSSLALVHVDVDDQPQPLSVAPIVSSYNEKIRPVLDALENLRRLNIAKEGIQLPTIVVVGDQSSGKSSVLESLAGISLPRGQGICTRVPLVMRLQNHLLPQPELVLEYNGKQLSTDEENVSDAINTATEELAGTAKGISNTPLTLIVKKNGVPDLTMVDLPGITRVPVHGQPDNIYDQIKDIIMEYITPEESIILNVLSATVDFSTCESIRMSQIVDKTGLRTLAVVTKADKSPEGLLEKVTADDVNIGLGYVCVRNRIGEESYEEARNEEQKLFESHSLLSKIDKSIAGIPVLAQKLVNVQAMIISKTLPEIIKKINEKLYNSVHELKTLPANLTSLADAMSAFLHIVSLSRDSLRKILLMGEFEEYPDDKQMHCTARLVERLNSYASDLQNCAESDSTKDFLMEEIVVLEEAKLIGLPNFMPRTAFLTLLQRKVKGISHMPTNFVDNVWSYLERVVISVMNRHSANYYQLQVATRRAVEHVIAKKKSNSIQHVMQAVDMEKHTDYTCNPEYLQEYNELMSYQEAFLKKVLDDDRCSSTVKLEGVGNIEVNHLIEYPINVLNQAFDLKARLIAYWKIVLRRLIDSIALHLMLSINELINNDLQKEICNELGGSVERLLEESPSISGKRQSLSRSVKVLRESKETVANIMDRIGVYGNN