Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53376.t1 | XP_003629868.1 | 96.1 | 675 | 25 | 1 | 1 | 675 | 1 | 674 | 0.00E+00 | 1233 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53376.t1 | Q9ZP55 | 55.7 | 672 | 286 | 4 | 3 | 668 | 2 | 667 | 7.6e-206 | 718.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53376.t1 | G7L7C1 | 96.1 | 675 | 25 | 1 | 1 | 675 | 1 | 674 | 0.0e+00 | 1233.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene53376 | 0.834742 | 2.51E-56 | -1.69E-46 |
MS.gene049227 | MS.gene53376 | 0.802313 | 5.95E-49 | -1.69E-46 |
MS.gene049418 | MS.gene53376 | 0.827666 | 1.38E-54 | -1.69E-46 |
MS.gene049698 | MS.gene53376 | 0.805043 | 1.61E-49 | -1.69E-46 |
MS.gene049711 | MS.gene53376 | 0.820576 | 6.38E-53 | -1.69E-46 |
MS.gene050551 | MS.gene53376 | 0.805793 | 1.12E-49 | -1.69E-46 |
MS.gene051018 | MS.gene53376 | 0.806025 | 1.00E-49 | -1.69E-46 |
MS.gene051388 | MS.gene53376 | 0.820752 | 5.81E-53 | -1.69E-46 |
MS.gene05150 | MS.gene53376 | 0.807288 | 5.44E-50 | -1.69E-46 |
MS.gene05157 | MS.gene53376 | 0.816518 | 5.31E-52 | -1.69E-46 |
MS.gene051744 | MS.gene53376 | 0.831137 | 1.98E-55 | -1.69E-46 |
MS.gene052732 | MS.gene53376 | 0.823304 | 1.49E-53 | -1.69E-46 |
MS.gene053122 | MS.gene53376 | 0.812117 | 4.98E-51 | -1.69E-46 |
MS.gene053144 | MS.gene53376 | 0.868184 | 7.89E-66 | -1.69E-46 |
MS.gene053226 | MS.gene53376 | 0.829769 | 4.28E-55 | -1.69E-46 |
MS.gene053536 | MS.gene53376 | 0.816727 | 4.76E-52 | -1.69E-46 |
MS.gene053538 | MS.gene53376 | 0.817704 | 2.87E-52 | -1.69E-46 |
MS.gene054584 | MS.gene53376 | 0.875848 | 2.23E-68 | -1.69E-46 |
MS.gene055144 | MS.gene53376 | 0.81527 | 1.01E-51 | -1.69E-46 |
MS.gene055465 | MS.gene53376 | 0.813565 | 2.40E-51 | -1.69E-46 |
MS.gene055466 | MS.gene53376 | 0.820493 | 6.66E-53 | -1.69E-46 |
MS.gene055468 | MS.gene53376 | 0.813158 | 2.95E-51 | -1.69E-46 |
MS.gene055513 | MS.gene53376 | 0.802158 | 6.41E-49 | -1.69E-46 |
MS.gene055537 | MS.gene53376 | 0.849837 | 2.50E-60 | -1.69E-46 |
MS.gene055580 | MS.gene53376 | -0.844357 | 7.95E-59 | -1.69E-46 |
MS.gene055764 | MS.gene53376 | 0.808481 | 3.03E-50 | -1.69E-46 |
MS.gene056043 | MS.gene53376 | -0.825354 | 4.91E-54 | -1.69E-46 |
MS.gene056050 | MS.gene53376 | 0.812096 | 5.03E-51 | -1.69E-46 |
MS.gene056308 | MS.gene53376 | 0.82286 | 1.89E-53 | -1.69E-46 |
MS.gene056368 | MS.gene53376 | 0.812928 | 3.31E-51 | -1.69E-46 |
MS.gene056507 | MS.gene53376 | 0.822447 | 2.36E-53 | -1.69E-46 |
MS.gene057132 | MS.gene53376 | 0.805129 | 1.55E-49 | -1.69E-46 |
MS.gene057915 | MS.gene53376 | 0.819871 | 9.25E-53 | -1.69E-46 |
MS.gene058668 | MS.gene53376 | 0.839835 | 1.25E-57 | -1.69E-46 |
MS.gene058823 | MS.gene53376 | 0.827983 | 1.16E-54 | -1.69E-46 |
MS.gene058909 | MS.gene53376 | 0.837824 | 4.14E-57 | -1.69E-46 |
MS.gene058912 | MS.gene53376 | 0.838829 | 2.28E-57 | -1.69E-46 |
MS.gene05894 | MS.gene53376 | 0.81897 | 1.48E-52 | -1.69E-46 |
MS.gene059424 | MS.gene53376 | 0.805244 | 1.47E-49 | -1.69E-46 |
MS.gene059570 | MS.gene53376 | 0.80815 | 3.57E-50 | -1.69E-46 |
MS.gene060962 | MS.gene53376 | 0.82947 | 5.06E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene014901 | MS.gene53376 | PPI |
MS.gene80193 | MS.gene53376 | PPI |
MS.gene53376 | MS.gene32695 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53376.t1 | MTR_8g087770 | 96.148 | 675 | 25 | 1 | 1 | 675 | 1 | 674 | 0.0 | 1319 |
MS.gene53376.t1 | MTR_8g087750 | 81.994 | 672 | 111 | 5 | 6 | 672 | 11 | 677 | 0.0 | 1108 |
MS.gene53376.t1 | MTR_8g087763 | 76.991 | 226 | 51 | 1 | 374 | 599 | 4 | 228 | 1.82e-124 | 373 |
MS.gene53376.t1 | MTR_4g093750 | 37.846 | 325 | 180 | 9 | 67 | 376 | 35 | 352 | 2.87e-42 | 164 |
MS.gene53376.t1 | MTR_4g093750 | 39.726 | 292 | 154 | 9 | 67 | 343 | 35 | 319 | 1.60e-41 | 162 |
MS.gene53376.t1 | MTR_2g009690 | 36.624 | 314 | 187 | 6 | 63 | 366 | 40 | 351 | 2.00e-40 | 159 |
MS.gene53376.t1 | MTR_1g032550 | 35.336 | 283 | 163 | 7 | 69 | 337 | 35 | 311 | 2.99e-33 | 135 |
MS.gene53376.t1 | MTR_8g105580 | 35.461 | 282 | 163 | 6 | 69 | 337 | 35 | 310 | 1.53e-32 | 133 |
MS.gene53376.t1 | MTR_8g105580 | 35.461 | 282 | 163 | 6 | 69 | 337 | 35 | 310 | 1.53e-32 | 133 |
MS.gene53376.t1 | MTR_5g009150 | 42.473 | 186 | 105 | 2 | 69 | 252 | 35 | 220 | 8.01e-32 | 131 |
MS.gene53376.t1 | MTR_7g451010 | 35.274 | 292 | 165 | 8 | 69 | 346 | 40 | 321 | 2.37e-31 | 130 |
MS.gene53376.t1 | MTR_4g085860 | 75.641 | 78 | 18 | 1 | 206 | 282 | 2 | 79 | 7.47e-31 | 115 |
MS.gene53376.t1 | MTR_8g099550 | 42.105 | 190 | 100 | 3 | 69 | 252 | 34 | 219 | 8.76e-31 | 128 |
MS.gene53376.t1 | MTR_8g027675 | 41.709 | 199 | 105 | 5 | 69 | 264 | 34 | 224 | 1.29e-30 | 127 |
MS.gene53376.t1 | MTR_8g009510 | 34.494 | 316 | 183 | 9 | 69 | 369 | 40 | 346 | 1.48e-30 | 127 |
MS.gene53376.t1 | MTR_4g098920 | 34.483 | 319 | 179 | 10 | 69 | 369 | 34 | 340 | 2.07e-30 | 127 |
MS.gene53376.t1 | MTR_6g045107 | 74.359 | 78 | 19 | 1 | 206 | 282 | 2 | 79 | 7.25e-29 | 110 |
MS.gene53376.t1 | MTR_8g463270 | 30.303 | 231 | 142 | 7 | 54 | 269 | 27 | 253 | 1.73e-16 | 84.0 |
MS.gene53376.t1 | MTR_8g009510 | 30.488 | 246 | 151 | 6 | 136 | 369 | 2 | 239 | 6.74e-16 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53376.t1 | AT1G60500 | 55.655 | 672 | 286 | 4 | 3 | 668 | 2 | 667 | 0.0 | 763 |
MS.gene53376.t1 | AT1G60530 | 71.379 | 290 | 75 | 1 | 18 | 307 | 19 | 300 | 2.80e-142 | 417 |
MS.gene53376.t1 | AT4G33650 | 30.023 | 443 | 266 | 11 | 35 | 452 | 29 | 452 | 1.12e-39 | 156 |
MS.gene53376.t1 | AT4G33650 | 30.023 | 443 | 266 | 11 | 35 | 452 | 29 | 452 | 1.21e-39 | 156 |
MS.gene53376.t1 | AT2G14120 | 33.234 | 337 | 207 | 6 | 25 | 346 | 1 | 334 | 1.47e-38 | 152 |
MS.gene53376.t1 | AT2G14120 | 33.234 | 337 | 207 | 6 | 25 | 346 | 1 | 334 | 1.75e-38 | 153 |
MS.gene53376.t1 | AT2G14120 | 33.234 | 337 | 207 | 6 | 25 | 346 | 1 | 334 | 1.83e-38 | 152 |
MS.gene53376.t1 | AT2G14120 | 33.234 | 337 | 207 | 6 | 25 | 346 | 1 | 334 | 1.91e-38 | 153 |
MS.gene53376.t1 | AT1G14830 | 34.892 | 278 | 171 | 5 | 69 | 337 | 35 | 311 | 3.98e-34 | 138 |
MS.gene53376.t1 | AT3G60190 | 34.965 | 286 | 174 | 6 | 69 | 344 | 40 | 323 | 1.03e-31 | 131 |
MS.gene53376.t1 | AT5G42080 | 33.762 | 311 | 192 | 7 | 69 | 369 | 34 | 340 | 1.85e-31 | 128 |
MS.gene53376.t1 | AT5G42080 | 33.762 | 311 | 192 | 7 | 69 | 369 | 34 | 340 | 3.08e-31 | 129 |
MS.gene53376.t1 | AT5G42080 | 33.762 | 311 | 192 | 7 | 69 | 369 | 34 | 340 | 3.94e-31 | 129 |
MS.gene53376.t1 | AT5G42080 | 33.762 | 311 | 192 | 7 | 69 | 369 | 34 | 340 | 3.94e-31 | 129 |
MS.gene53376.t1 | AT2G44590 | 32.986 | 288 | 175 | 7 | 69 | 345 | 35 | 315 | 7.82e-31 | 128 |
MS.gene53376.t1 | AT3G61760 | 41.176 | 204 | 110 | 5 | 69 | 268 | 34 | 231 | 6.12e-30 | 124 |
MS.gene53376.t1 | AT3G61760 | 41.176 | 204 | 110 | 5 | 69 | 268 | 34 | 231 | 7.49e-30 | 125 |
MS.gene53376.t1 | AT3G61760 | 41.176 | 204 | 110 | 5 | 69 | 268 | 34 | 231 | 9.40e-30 | 125 |
MS.gene53376.t1 | AT2G44590 | 29.861 | 288 | 167 | 8 | 69 | 345 | 35 | 298 | 2.18e-21 | 99.4 |
MS.gene53376.t1 | AT2G44590 | 29.861 | 288 | 167 | 8 | 69 | 345 | 35 | 298 | 2.31e-21 | 99.0 |
MS.gene53376.t1 | AT1G53140 | 27.731 | 238 | 156 | 7 | 44 | 269 | 36 | 269 | 5.87e-15 | 79.3 |
Find 128 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGGAGTCTCCATCTATTTC+TGG | 0.166668 | 4.1:+13022456 | MS.gene53376:CDS |
CATTGCTGGTATTCCTGTTT+TGG | 0.205580 | 4.1:+13021459 | MS.gene53376:CDS |
GCAGTTCTTGGCATGAAATT+TGG | 0.208693 | 4.1:-13021856 | None:intergenic |
TTAGTACTTGTGAGTCTATT+AGG | 0.242558 | 4.1:+13021209 | MS.gene53376:CDS |
ATCAAGTTTGTTTGCCTTTG+TGG | 0.244719 | 4.1:-13020573 | None:intergenic |
CTTGAGGAAGCTAAGTTAAT+TGG | 0.255531 | 4.1:+13021829 | MS.gene53376:CDS |
TGACAATGTGTGGAGCTATT+TGG | 0.298324 | 4.1:+13021939 | MS.gene53376:CDS |
TCTGAGAAAGATTCTTCTAA+TGG | 0.298751 | 4.1:+13021663 | MS.gene53376:CDS |
AATGTTAGAAAAGCAGTTCT+TGG | 0.299019 | 4.1:-13021868 | None:intergenic |
ATCTGATCATAAATGTTATC+AGG | 0.304162 | 4.1:-13021112 | None:intergenic |
TAACATTTATGATCAGATTA+AGG | 0.317964 | 4.1:+13021117 | MS.gene53376:CDS |
CTTCCAACCATTGTTGTTGT+TGG | 0.322456 | 4.1:+13020755 | MS.gene53376:CDS |
TGATGATGTTAACATTGGTT+TGG | 0.323376 | 4.1:+13021327 | MS.gene53376:CDS |
GCCTGCCAATTTGACTTCAT+TGG | 0.333846 | 4.1:+13021591 | MS.gene53376:CDS |
TCCACAGCCAGAGCTTGTTT+TGG | 0.338480 | 4.1:+13020895 | MS.gene53376:CDS |
TTCATTTCTTGCTTCTTCAT+AGG | 0.344245 | 4.1:-13021386 | None:intergenic |
AGAGACTGTGGCCAACATTA+TGG | 0.346194 | 4.1:+13022527 | MS.gene53376:CDS |
CTTACTATGGTTGATCTTCC+AGG | 0.352429 | 4.1:+13021061 | MS.gene53376:CDS |
ATCTGCCAATGAAGTCAAAT+TGG | 0.360580 | 4.1:-13021596 | None:intergenic |
CAAGGGTACCTTTGGTTATG+AGG | 0.366182 | 4.1:+13020855 | MS.gene53376:CDS |
CAATGCATTTGTTTATCATC+AGG | 0.370755 | 4.1:-13021703 | None:intergenic |
TGCAAACTATTACCAGTTGC+AGG | 0.374084 | 4.1:+13021996 | MS.gene53376:CDS |
TGGAGTTCCTGATCTTACTA+TGG | 0.379945 | 4.1:+13021048 | MS.gene53376:CDS |
ACTTTCTCCAACAAACCTTC+AGG | 0.384947 | 4.1:-13021298 | None:intergenic |
CTGAGAAAGATTCTTCTAAT+GGG | 0.390787 | 4.1:+13021664 | MS.gene53376:CDS |
GATGATGTTAACATTGGTTT+GGG | 0.391771 | 4.1:+13021328 | MS.gene53376:CDS |
TTCAAAATAATACTCTCTTC+AGG | 0.392099 | 4.1:-13021163 | None:intergenic |
GCTCTGGCTGTGGAAGTAAA+TGG | 0.394731 | 4.1:-13020886 | None:intergenic |
TTCCATTAGGAAATCCTTTG+TGG | 0.394982 | 4.1:-13021794 | None:intergenic |
ATAACTCGTGTTCCTGTTCA+TGG | 0.396246 | 4.1:+13021085 | MS.gene53376:CDS |
TTGATCTTCTTAATTATCTC+AGG | 0.396848 | 4.1:-13021529 | None:intergenic |
TCACAGATAGTTGATAAAAC+TGG | 0.398319 | 4.1:+13021235 | MS.gene53376:CDS |
AGGCAAGATTAATTGCCTAT+TGG | 0.399341 | 4.1:+13022304 | MS.gene53376:CDS |
TCCGATCAATGTGTTGAATC+AGG | 0.406853 | 4.1:+13022269 | MS.gene53376:CDS |
AAGATTGACAAATCCATTGC+TGG | 0.411898 | 4.1:+13021445 | MS.gene53376:CDS |
GAATCAGGCCTTTGACTTGA+AGG | 0.413968 | 4.1:+13022284 | MS.gene53376:CDS |
ATGGACAGGATTGGAGTCTA+TGG | 0.415221 | 4.1:+13022546 | MS.gene53376:CDS |
TTGATGCTCTTGAAAATCTA+AGG | 0.416842 | 4.1:+13020702 | MS.gene53376:CDS |
TTGCAATCCGGAGTACTTGC+AGG | 0.423704 | 4.1:+13022122 | MS.gene53376:CDS |
AATTTGTACAAGGGTACCTT+TGG | 0.424069 | 4.1:+13020847 | MS.gene53376:CDS |
TCAAGTACTGTGAAGCTTGA+AGG | 0.424080 | 4.1:+13022210 | MS.gene53376:CDS |
TGTCTCTTACCAGAAATAGA+TGG | 0.425419 | 4.1:-13022465 | None:intergenic |
GGACTACGATCTCTTCCATT+AGG | 0.434291 | 4.1:-13021807 | None:intergenic |
TGTGATGCAAGCTGTTGATA+TGG | 0.436114 | 4.1:+13022080 | MS.gene53376:CDS |
TAAATCACCTGAAGGTTTGT+TGG | 0.440077 | 4.1:+13021291 | MS.gene53376:CDS |
TTTGGAAAGGGTTGTTATCT+CGG | 0.442091 | 4.1:+13021957 | MS.gene53376:CDS |
ACAGCCACTGAGGAGCTTGC+TGG | 0.443000 | 4.1:+13020974 | MS.gene53376:CDS |
CCTCAGCACAATCTTCCAAT+AGG | 0.443004 | 4.1:-13022319 | None:intergenic |
TGGGGTGTTGGAAATCCCTT+TGG | 0.443439 | 4.1:-13021002 | None:intergenic |
TTCCACAAAGGATTTCCTAA+TGG | 0.449900 | 4.1:+13021792 | MS.gene53376:CDS |
ACAAGCTTCTGAGCCAAAAC+AGG | 0.453897 | 4.1:-13021472 | None:intergenic |
ACATTGTCAACAAAATTAGT+TGG | 0.454264 | 4.1:-13021925 | None:intergenic |
GCATTGTACTGCTCGGTTAG+TGG | 0.455271 | 4.1:+13021720 | MS.gene53376:CDS |
TCATTATAAGAAGATACAAT+TGG | 0.458646 | 4.1:-13020662 | None:intergenic |
TACGAGTAGCAACCTGCAAC+TGG | 0.461514 | 4.1:-13022008 | None:intergenic |
ACAATTGGTGCAACAGATAG+AGG | 0.467988 | 4.1:-13020647 | None:intergenic |
TCTTTACTATCAAAGTCAGT+GGG | 0.470875 | 4.1:-13021021 | None:intergenic |
TGATACCAGCTAATGATTCA+AGG | 0.474056 | 4.1:-13020805 | None:intergenic |
GAGCTTGCTGGCACTGCCAA+AGG | 0.478600 | 4.1:+13020986 | MS.gene53376:CDS |
GTTGTTGGAGATCAATCATC+TGG | 0.485196 | 4.1:+13020770 | MS.gene53376:CDS |
TTATACTCCAAAACAAGCTC+TGG | 0.492061 | 4.1:-13020902 | None:intergenic |
TATCAAAGTCAGTGGGGTGT+TGG | 0.492352 | 4.1:-13021014 | None:intergenic |
TTATCAGGTTGACCATGAAC+AGG | 0.495576 | 4.1:-13021097 | None:intergenic |
GCGTCTCAACATTGCTAAAG+AGG | 0.501157 | 4.1:+13020724 | MS.gene53376:CDS |
AGCTTGCATCACATGTTGAA+TGG | 0.501675 | 4.1:-13022070 | None:intergenic |
GCCAATGAAGTCAAATTGGC+AGG | 0.504122 | 4.1:-13021592 | None:intergenic |
CACGGATTACACTTGCAATC+CGG | 0.511102 | 4.1:+13022110 | MS.gene53376:CDS |
TTTGTGTGAGAAATCGCATT+GGG | 0.515555 | 4.1:+13021356 | MS.gene53376:CDS |
GTAAGAGACAAAGTTTAAGC+AGG | 0.516534 | 4.1:+13022478 | MS.gene53376:CDS |
AATGCATTTGTTTATCATCA+GGG | 0.517273 | 4.1:-13021702 | None:intergenic |
TCCAATCCTGTCCATAATGT+TGG | 0.522411 | 4.1:-13022538 | None:intergenic |
AGATCAACCATAGTAAGATC+AGG | 0.522883 | 4.1:-13021055 | None:intergenic |
AGTGTCCTTGAATCATTAGC+TGG | 0.523168 | 4.1:+13020800 | MS.gene53376:CDS |
TCCAAAACAAGCTCTGGCTG+TGG | 0.524796 | 4.1:-13020896 | None:intergenic |
GGTGCAACAGATAGAGGTTG+AGG | 0.525331 | 4.1:-13020641 | None:intergenic |
TAATCTTGCCTTCAAGTCAA+AGG | 0.534214 | 4.1:-13022292 | None:intergenic |
GCCAACATTATGGACAGGAT+TGG | 0.534644 | 4.1:+13022537 | MS.gene53376:CDS |
GCCTGATTCAACACATTGAT+CGG | 0.536471 | 4.1:-13022270 | None:intergenic |
AAGGAGATTTGTAATGAACT+TGG | 0.538785 | 4.1:+13022411 | MS.gene53376:CDS |
ATCAGCTTGCCACGTGGACA+AGG | 0.540401 | 4.1:+13020824 | MS.gene53376:CDS |
TCAGATTAAGGATATTATCA+TGG | 0.543580 | 4.1:+13021129 | MS.gene53376:CDS |
TTATATTCCTGCAAGTACTC+CGG | 0.543933 | 4.1:-13022129 | None:intergenic |
AGCTTGCTGGCACTGCCAAA+GGG | 0.547647 | 4.1:+13020987 | MS.gene53376:CDS |
ATGTGTGGAGCTATTTGGAA+AGG | 0.549884 | 4.1:+13021944 | MS.gene53376:CDS |
AACAAATGCATTGTACTGCT+CGG | 0.550416 | 4.1:+13021713 | MS.gene53376:CDS |
TCTCCAACAACAACAATGGT+TGG | 0.551269 | 4.1:-13020758 | None:intergenic |
GAGATTTGTAATGAACTTGG+TGG | 0.560761 | 4.1:+13022414 | MS.gene53376:CDS |
ACTTTGATAGTAAAGAAGAA+TGG | 0.569006 | 4.1:+13021028 | MS.gene53376:CDS |
TAGTTGATAAAACTGGTTTG+AGG | 0.569831 | 4.1:+13021242 | MS.gene53376:CDS |
GTACTGCTCGGTTAGTGGAG+AGG | 0.571484 | 4.1:+13021725 | MS.gene53376:CDS |
CTGTGGCCAACATTATGGAC+AGG | 0.573065 | 4.1:+13022532 | MS.gene53376:CDS |
GACATTAGCTGTTGTAACAA+AGG | 0.576294 | 4.1:+13021264 | MS.gene53376:CDS |
ATTACTTCAGAGAAAAGTGA+AGG | 0.577066 | 4.1:+13021888 | MS.gene53376:CDS |
AGTGCCAGCAAGCTCCTCAG+TGG | 0.578957 | 4.1:-13020978 | None:intergenic |
TTCTTTACTATCAAAGTCAG+TGG | 0.579933 | 4.1:-13021022 | None:intergenic |
CGTCTCAACATTGCTAAAGA+GGG | 0.585949 | 4.1:+13020725 | MS.gene53376:CDS |
GTGGACAAGGAATTTGTACA+AGG | 0.592993 | 4.1:+13020837 | MS.gene53376:CDS |
CAGTGTTGAGAGGCTGCTTG+AGG | 0.594487 | 4.1:+13022437 | MS.gene53376:CDS |
GGAAGAGATCGTAGTCCTTG+AGG | 0.596070 | 4.1:+13021813 | MS.gene53376:CDS |
ATTGGAAGATTGTGCTGAGG+AGG | 0.597029 | 4.1:+13022322 | MS.gene53376:CDS |
CAAACAACTTTCAACTGATG+AGG | 0.601066 | 4.1:+13020928 | MS.gene53376:CDS |
ACTGTGAAGCTTGAAGGAGT+TGG | 0.602736 | 4.1:+13022216 | MS.gene53376:CDS |
TGTGAGAAATCGCATTGGGG+AGG | 0.608396 | 4.1:+13021360 | MS.gene53376:CDS |
GGTTGCTACTCGTAGAGCTG+TGG | 0.612719 | 4.1:+13022017 | MS.gene53376:CDS |
ACAGGAACACGAGTTATACC+TGG | 0.615115 | 4.1:-13021079 | None:intergenic |
TGTGTGGAGCTATTTGGAAA+GGG | 0.616400 | 4.1:+13021945 | MS.gene53376:CDS |
CAAAACAGGAATACCAGCAA+TGG | 0.616931 | 4.1:-13021458 | None:intergenic |
CAATTAACTTAGCTTCCTCA+AGG | 0.618556 | 4.1:-13021828 | None:intergenic |
GATTAACAATGATCTGCAGA+AGG | 0.625104 | 4.1:+13022392 | MS.gene53376:CDS |
ACTGCTGATGATGTTAACAT+TGG | 0.625783 | 4.1:+13021322 | MS.gene53376:CDS |
AAGGCTGATAAATCACCTGA+AGG | 0.627415 | 4.1:+13021283 | MS.gene53376:CDS |
TTGATCTCCAACAACAACAA+TGG | 0.648908 | 4.1:-13020762 | None:intergenic |
TAGAGAAAGCAAAGAGACTG+TGG | 0.654791 | 4.1:+13022515 | MS.gene53376:CDS |
GTACAAATTCCTTGTCCACG+TGG | 0.660130 | 4.1:-13020833 | None:intergenic |
TTACTTCAGAGAAAAGTGAA+GGG | 0.662697 | 4.1:+13021889 | MS.gene53376:CDS |
TGTTGATATGGAGAAGCACA+CGG | 0.665028 | 4.1:+13022092 | MS.gene53376:CDS |
AACTTGGTGGCAGTGTTGAG+AGG | 0.665158 | 4.1:+13022427 | MS.gene53376:CDS |
GTTTGTGTGAGAAATCGCAT+TGG | 0.677044 | 4.1:+13021355 | MS.gene53376:CDS |
TGCTATAAATACAGCCACTG+AGG | 0.694192 | 4.1:+13020964 | MS.gene53376:CDS |
CTTTACTATCAAAGTCAGTG+GGG | 0.697240 | 4.1:-13021020 | None:intergenic |
TGCTGAAAGTGATTCCACAA+AGG | 0.697479 | 4.1:+13021780 | MS.gene53376:CDS |
GCTGGTATCAGCTTGCCACG+TGG | 0.699523 | 4.1:+13020818 | MS.gene53376:CDS |
GTTGATCATCAACATCAACA+TGG | 0.706155 | 4.1:-13020619 | None:intergenic |
TGGAAACAAGAGTTCCACAA+AGG | 0.707464 | 4.1:+13020559 | MS.gene53376:CDS |
CCTATTGGAAGATTGTGCTG+AGG | 0.716472 | 4.1:+13022319 | MS.gene53376:CDS |
TGGACAAGGAATTTGTACAA+GGG | 0.728664 | 4.1:+13020838 | MS.gene53376:CDS |
TTGTGTGAGAAATCGCATTG+GGG | 0.740526 | 4.1:+13021357 | MS.gene53376:CDS |
ACTGGTAATAGTTTGCAGAG+TGG | 0.741343 | 4.1:-13021990 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAACATTTATGATCAGATTA+AGG | + | chr4.1:13021117-13021136 | MS.gene53376:CDS | 20.0% |
!! | TCATTATAAGAAGATACAAT+TGG | - | chr4.1:13020665-13020684 | None:intergenic | 20.0% |
!!! | AGCATTTTTGAAAAAAGTTT+TGG | + | chr4.1:13022173-13022192 | MS.gene53376:CDS | 20.0% |
! | AATGCATTTGTTTATCATCA+GGG | - | chr4.1:13021705-13021724 | None:intergenic | 25.0% |
! | ACATTGTCAACAAAATTAGT+TGG | - | chr4.1:13021928-13021947 | None:intergenic | 25.0% |
! | ATCTGATCATAAATGTTATC+AGG | - | chr4.1:13021115-13021134 | None:intergenic | 25.0% |
! | TCAGATTAAGGATATTATCA+TGG | + | chr4.1:13021129-13021148 | MS.gene53376:CDS | 25.0% |
! | TTCAAAATAATACTCTCTTC+AGG | - | chr4.1:13021166-13021185 | None:intergenic | 25.0% |
! | TTGATCTTCTTAATTATCTC+AGG | - | chr4.1:13021532-13021551 | None:intergenic | 25.0% |
!! | ACTTTGATAGTAAAGAAGAA+TGG | + | chr4.1:13021028-13021047 | MS.gene53376:CDS | 25.0% |
AAGGAGATTTGTAATGAACT+TGG | + | chr4.1:13022411-13022430 | MS.gene53376:CDS | 30.0% | |
AATGTTAGAAAAGCAGTTCT+TGG | - | chr4.1:13021871-13021890 | None:intergenic | 30.0% | |
ATTACTTCAGAGAAAAGTGA+AGG | + | chr4.1:13021888-13021907 | MS.gene53376:CDS | 30.0% | |
CAATGCATTTGTTTATCATC+AGG | - | chr4.1:13021706-13021725 | None:intergenic | 30.0% | |
CTGAGAAAGATTCTTCTAAT+GGG | + | chr4.1:13021664-13021683 | MS.gene53376:CDS | 30.0% | |
TCTGAGAAAGATTCTTCTAA+TGG | + | chr4.1:13021663-13021682 | MS.gene53376:CDS | 30.0% | |
TCTTTACTATCAAAGTCAGT+GGG | - | chr4.1:13021024-13021043 | None:intergenic | 30.0% | |
TTACTTCAGAGAAAAGTGAA+GGG | + | chr4.1:13021889-13021908 | MS.gene53376:CDS | 30.0% | |
TTAGTACTTGTGAGTCTATT+AGG | + | chr4.1:13021209-13021228 | MS.gene53376:CDS | 30.0% | |
TTCATTTCTTGCTTCTTCAT+AGG | - | chr4.1:13021389-13021408 | None:intergenic | 30.0% | |
TTCTTTACTATCAAAGTCAG+TGG | - | chr4.1:13021025-13021044 | None:intergenic | 30.0% | |
TTGATGCTCTTGAAAATCTA+AGG | + | chr4.1:13020702-13020721 | MS.gene53376:CDS | 30.0% | |
! | CTAATTTTGTTGACAATGTG+TGG | + | chr4.1:13021929-13021948 | MS.gene53376:CDS | 30.0% |
! | TGATGATGTTAACATTGGTT+TGG | + | chr4.1:13021327-13021346 | MS.gene53376:CDS | 30.0% |
!! | GATGATGTTAACATTGGTTT+GGG | + | chr4.1:13021328-13021347 | MS.gene53376:CDS | 30.0% |
!! | TAGTTGATAAAACTGGTTTG+AGG | + | chr4.1:13021242-13021261 | MS.gene53376:CDS | 30.0% |
!! | TCACAGATAGTTGATAAAAC+TGG | + | chr4.1:13021235-13021254 | MS.gene53376:CDS | 30.0% |
AACAAATGCATTGTACTGCT+CGG | + | chr4.1:13021713-13021732 | MS.gene53376:CDS | 35.0% | |
AAGATTGACAAATCCATTGC+TGG | + | chr4.1:13021445-13021464 | MS.gene53376:CDS | 35.0% | |
AGATCAACCATAGTAAGATC+AGG | - | chr4.1:13021058-13021077 | None:intergenic | 35.0% | |
AGGCAAGATTAATTGCCTAT+TGG | + | chr4.1:13022304-13022323 | MS.gene53376:CDS | 35.0% | |
ATCTGCCAATGAAGTCAAAT+TGG | - | chr4.1:13021599-13021618 | None:intergenic | 35.0% | |
CAAACAACTTTCAACTGATG+AGG | + | chr4.1:13020928-13020947 | MS.gene53376:CDS | 35.0% | |
CAATTAACTTAGCTTCCTCA+AGG | - | chr4.1:13021831-13021850 | None:intergenic | 35.0% | |
CTTGAGGAAGCTAAGTTAAT+TGG | + | chr4.1:13021829-13021848 | MS.gene53376:CDS | 35.0% | |
CTTTACTATCAAAGTCAGTG+GGG | - | chr4.1:13021023-13021042 | None:intergenic | 35.0% | |
GACATTAGCTGTTGTAACAA+AGG | + | chr4.1:13021264-13021283 | MS.gene53376:CDS | 35.0% | |
GAGATTTGTAATGAACTTGG+TGG | + | chr4.1:13022414-13022433 | MS.gene53376:CDS | 35.0% | |
GATTAACAATGATCTGCAGA+AGG | + | chr4.1:13022392-13022411 | MS.gene53376:CDS | 35.0% | |
GTAAGAGACAAAGTTTAAGC+AGG | + | chr4.1:13022478-13022497 | MS.gene53376:CDS | 35.0% | |
GTTGATCATCAACATCAACA+TGG | - | chr4.1:13020622-13020641 | None:intergenic | 35.0% | |
TAAATCACCTGAAGGTTTGT+TGG | + | chr4.1:13021291-13021310 | MS.gene53376:CDS | 35.0% | |
TAATCTTGCCTTCAAGTCAA+AGG | - | chr4.1:13022295-13022314 | None:intergenic | 35.0% | |
TGATACCAGCTAATGATTCA+AGG | - | chr4.1:13020808-13020827 | None:intergenic | 35.0% | |
TGGACAAGGAATTTGTACAA+GGG | + | chr4.1:13020838-13020857 | MS.gene53376:CDS | 35.0% | |
TGTCTCTTACCAGAAATAGA+TGG | - | chr4.1:13022468-13022487 | None:intergenic | 35.0% | |
TTATACTCCAAAACAAGCTC+TGG | - | chr4.1:13020905-13020924 | None:intergenic | 35.0% | |
TTATATTCCTGCAAGTACTC+CGG | - | chr4.1:13022132-13022151 | None:intergenic | 35.0% | |
TTCCACAAAGGATTTCCTAA+TGG | + | chr4.1:13021792-13021811 | MS.gene53376:CDS | 35.0% | |
TTCCATTAGGAAATCCTTTG+TGG | - | chr4.1:13021797-13021816 | None:intergenic | 35.0% | |
TTGATCTCCAACAACAACAA+TGG | - | chr4.1:13020765-13020784 | None:intergenic | 35.0% | |
TTTGGAAAGGGTTGTTATCT+CGG | + | chr4.1:13021957-13021976 | MS.gene53376:CDS | 35.0% | |
TTTGTGTGAGAAATCGCATT+GGG | + | chr4.1:13021356-13021375 | MS.gene53376:CDS | 35.0% | |
! | ACTGCTGATGATGTTAACAT+TGG | + | chr4.1:13021322-13021341 | MS.gene53376:CDS | 35.0% |
! | ATCAAGTTTGTTTGCCTTTG+TGG | - | chr4.1:13020576-13020595 | None:intergenic | 35.0% |
!! | AATTTGTACAAGGGTACCTT+TGG | + | chr4.1:13020847-13020866 | MS.gene53376:CDS | 35.0% |
!!! | GAGCTTGTTTTGGAGTATAA+TGG | + | chr4.1:13020905-13020924 | MS.gene53376:CDS | 35.0% |
AAGGCTGATAAATCACCTGA+AGG | + | chr4.1:13021283-13021302 | MS.gene53376:CDS | 40.0% | |
ACAATTGGTGCAACAGATAG+AGG | - | chr4.1:13020650-13020669 | None:intergenic | 40.0% | |
ACTTTCTCCAACAAACCTTC+AGG | - | chr4.1:13021301-13021320 | None:intergenic | 40.0% | |
AGCTTGCATCACATGTTGAA+TGG | - | chr4.1:13022073-13022092 | None:intergenic | 40.0% | |
AGTGTCCTTGAATCATTAGC+TGG | + | chr4.1:13020800-13020819 | MS.gene53376:CDS | 40.0% | |
ATAACTCGTGTTCCTGTTCA+TGG | + | chr4.1:13021085-13021104 | MS.gene53376:CDS | 40.0% | |
ATGTGTGGAGCTATTTGGAA+AGG | + | chr4.1:13021944-13021963 | MS.gene53376:CDS | 40.0% | |
CAAAACAGGAATACCAGCAA+TGG | - | chr4.1:13021461-13021480 | None:intergenic | 40.0% | |
CGTCTCAACATTGCTAAAGA+GGG | + | chr4.1:13020725-13020744 | MS.gene53376:CDS | 40.0% | |
CTTACTATGGTTGATCTTCC+AGG | + | chr4.1:13021061-13021080 | MS.gene53376:CDS | 40.0% | |
GCAGTTCTTGGCATGAAATT+TGG | - | chr4.1:13021859-13021878 | None:intergenic | 40.0% | |
GCCTGATTCAACACATTGAT+CGG | - | chr4.1:13022273-13022292 | None:intergenic | 40.0% | |
GTGGACAAGGAATTTGTACA+AGG | + | chr4.1:13020837-13020856 | MS.gene53376:CDS | 40.0% | |
GTTGTTGGAGATCAATCATC+TGG | + | chr4.1:13020770-13020789 | MS.gene53376:CDS | 40.0% | |
GTTTGTGTGAGAAATCGCAT+TGG | + | chr4.1:13021355-13021374 | MS.gene53376:CDS | 40.0% | |
TAGAGAAAGCAAAGAGACTG+TGG | + | chr4.1:13022515-13022534 | MS.gene53376:CDS | 40.0% | |
TCCAATCCTGTCCATAATGT+TGG | - | chr4.1:13022541-13022560 | None:intergenic | 40.0% | |
TCCGATCAATGTGTTGAATC+AGG | + | chr4.1:13022269-13022288 | MS.gene53376:CDS | 40.0% | |
TCTCCAACAACAACAATGGT+TGG | - | chr4.1:13020761-13020780 | None:intergenic | 40.0% | |
TGACAATGTGTGGAGCTATT+TGG | + | chr4.1:13021939-13021958 | MS.gene53376:CDS | 40.0% | |
TGCAAACTATTACCAGTTGC+AGG | + | chr4.1:13021996-13022015 | MS.gene53376:CDS | 40.0% | |
TGCTATAAATACAGCCACTG+AGG | + | chr4.1:13020964-13020983 | MS.gene53376:CDS | 40.0% | |
TGCTGAAAGTGATTCCACAA+AGG | + | chr4.1:13021780-13021799 | MS.gene53376:CDS | 40.0% | |
TGGAAACAAGAGTTCCACAA+AGG | + | chr4.1:13020559-13020578 | MS.gene53376:CDS | 40.0% | |
TGGAGTTCCTGATCTTACTA+TGG | + | chr4.1:13021048-13021067 | MS.gene53376:CDS | 40.0% | |
TGTGATGCAAGCTGTTGATA+TGG | + | chr4.1:13022080-13022099 | MS.gene53376:CDS | 40.0% | |
TGTGTGGAGCTATTTGGAAA+GGG | + | chr4.1:13021945-13021964 | MS.gene53376:CDS | 40.0% | |
TTGTGTGAGAAATCGCATTG+GGG | + | chr4.1:13021357-13021376 | MS.gene53376:CDS | 40.0% | |
! | ACTGGTAATAGTTTGCAGAG+TGG | - | chr4.1:13021993-13022012 | None:intergenic | 40.0% |
! | CATTGCTGGTATTCCTGTTT+TGG | + | chr4.1:13021459-13021478 | MS.gene53376:CDS | 40.0% |
! | CTTCCAACCATTGTTGTTGT+TGG | + | chr4.1:13020755-13020774 | MS.gene53376:CDS | 40.0% |
! | TCAAGTACTGTGAAGCTTGA+AGG | + | chr4.1:13022210-13022229 | MS.gene53376:CDS | 40.0% |
! | TGTTGATATGGAGAAGCACA+CGG | + | chr4.1:13022092-13022111 | MS.gene53376:CDS | 40.0% |
! | TTTTGCAGCCTCATAACCAA+AGG | - | chr4.1:13020866-13020885 | None:intergenic | 40.0% |
!! | TTATCAGGTTGACCATGAAC+AGG | - | chr4.1:13021100-13021119 | None:intergenic | 40.0% |
!!! | TTTTCAAGAGCATCAAGCAC+TGG | - | chr4.1:13020698-13020717 | None:intergenic | 40.0% |
ACAAGCTTCTGAGCCAAAAC+AGG | - | chr4.1:13021475-13021494 | None:intergenic | 45.0% | |
ACAGGAACACGAGTTATACC+TGG | - | chr4.1:13021082-13021101 | None:intergenic | 45.0% | |
ACTGTGAAGCTTGAAGGAGT+TGG | + | chr4.1:13022216-13022235 | MS.gene53376:CDS | 45.0% | |
AGAGACTGTGGCCAACATTA+TGG | + | chr4.1:13022527-13022546 | MS.gene53376:CDS | 45.0% | |
ATGGACAGGATTGGAGTCTA+TGG | + | chr4.1:13022546-13022565 | MS.gene53376:CDS | 45.0% | |
ATTGGAAGATTGTGCTGAGG+AGG | + | chr4.1:13022322-13022341 | MS.gene53376:CDS | 45.0% | |
CCTATTGGAAGATTGTGCTG+AGG | + | chr4.1:13022319-13022338 | MS.gene53376:CDS | 45.0% | |
CCTCAGCACAATCTTCCAAT+AGG | - | chr4.1:13022322-13022341 | None:intergenic | 45.0% | |
GAGGAGTCTCCATCTATTTC+TGG | + | chr4.1:13022456-13022475 | MS.gene53376:CDS | 45.0% | |
GCCAACATTATGGACAGGAT+TGG | + | chr4.1:13022537-13022556 | MS.gene53376:CDS | 45.0% | |
GCCAATGAAGTCAAATTGGC+AGG | - | chr4.1:13021595-13021614 | None:intergenic | 45.0% | |
GCGTCTCAACATTGCTAAAG+AGG | + | chr4.1:13020724-13020743 | MS.gene53376:CDS | 45.0% | |
GGACTACGATCTCTTCCATT+AGG | - | chr4.1:13021810-13021829 | None:intergenic | 45.0% | |
GTACAAATTCCTTGTCCACG+TGG | - | chr4.1:13020836-13020855 | None:intergenic | 45.0% | |
TATCAAAGTCAGTGGGGTGT+TGG | - | chr4.1:13021017-13021036 | None:intergenic | 45.0% | |
! | CACGGATTACACTTGCAATC+CGG | + | chr4.1:13022110-13022129 | MS.gene53376:CDS | 45.0% |
! | GCCTGCCAATTTGACTTCAT+TGG | + | chr4.1:13021591-13021610 | MS.gene53376:CDS | 45.0% |
!! | CAAGGGTACCTTTGGTTATG+AGG | + | chr4.1:13020855-13020874 | MS.gene53376:CDS | 45.0% |
!! | GAATCAGGCCTTTGACTTGA+AGG | + | chr4.1:13022284-13022303 | MS.gene53376:CDS | 45.0% |
CTGTGGCCAACATTATGGAC+AGG | + | chr4.1:13022532-13022551 | MS.gene53376:CDS | 50.0% | |
GCATTGTACTGCTCGGTTAG+TGG | + | chr4.1:13021720-13021739 | MS.gene53376:CDS | 50.0% | |
GCTCTGGCTGTGGAAGTAAA+TGG | - | chr4.1:13020889-13020908 | None:intergenic | 50.0% | |
GGAAGAGATCGTAGTCCTTG+AGG | + | chr4.1:13021813-13021832 | MS.gene53376:CDS | 50.0% | |
GGTGCAACAGATAGAGGTTG+AGG | - | chr4.1:13020644-13020663 | None:intergenic | 50.0% | |
TACGAGTAGCAACCTGCAAC+TGG | - | chr4.1:13022011-13022030 | None:intergenic | 50.0% | |
TGTGAGAAATCGCATTGGGG+AGG | + | chr4.1:13021360-13021379 | MS.gene53376:CDS | 50.0% | |
! | AACTTGGTGGCAGTGTTGAG+AGG | + | chr4.1:13022427-13022446 | MS.gene53376:CDS | 50.0% |
! | TCCAAAACAAGCTCTGGCTG+TGG | - | chr4.1:13020899-13020918 | None:intergenic | 50.0% |
! | TTGCAATCCGGAGTACTTGC+AGG | + | chr4.1:13022122-13022141 | MS.gene53376:CDS | 50.0% |
!! | TCCACAGCCAGAGCTTGTTT+TGG | + | chr4.1:13020895-13020914 | MS.gene53376:CDS | 50.0% |
!! | TGGGGTGTTGGAAATCCCTT+TGG | - | chr4.1:13021005-13021024 | None:intergenic | 50.0% |
ATCAGCTTGCCACGTGGACA+AGG | + | chr4.1:13020824-13020843 | MS.gene53376:CDS | 55.0% | |
GGTTGCTACTCGTAGAGCTG+TGG | + | chr4.1:13022017-13022036 | MS.gene53376:CDS | 55.0% | |
GTACTGCTCGGTTAGTGGAG+AGG | + | chr4.1:13021725-13021744 | MS.gene53376:CDS | 55.0% | |
! | CAGTGTTGAGAGGCTGCTTG+AGG | + | chr4.1:13022437-13022456 | MS.gene53376:CDS | 55.0% |
!! | AGCTTGCTGGCACTGCCAAA+GGG | + | chr4.1:13020987-13021006 | MS.gene53376:CDS | 55.0% |
ACAGCCACTGAGGAGCTTGC+TGG | + | chr4.1:13020974-13020993 | MS.gene53376:CDS | 60.0% | |
AGTGCCAGCAAGCTCCTCAG+TGG | - | chr4.1:13020981-13021000 | None:intergenic | 60.0% | |
GCTGGTATCAGCTTGCCACG+TGG | + | chr4.1:13020818-13020837 | MS.gene53376:CDS | 60.0% | |
!! | GAGCTTGCTGGCACTGCCAA+AGG | + | chr4.1:13020986-13021005 | MS.gene53376:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 13020551 | 13022578 | 13020551 | ID=MS.gene53376 |
chr4.1 | mRNA | 13020551 | 13022578 | 13020551 | ID=MS.gene53376.t1;Parent=MS.gene53376 |
chr4.1 | exon | 13020551 | 13022578 | 13020551 | ID=MS.gene53376.t1.exon1;Parent=MS.gene53376.t1 |
chr4.1 | CDS | 13020551 | 13022578 | 13020551 | ID=cds.MS.gene53376.t1;Parent=MS.gene53376.t1 |
Gene Sequence |
Protein sequence |