Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54040.t1 | XP_003588480.1 | 95.2 | 207 | 10 | 0 | 1 | 207 | 83 | 289 | 7.90E-89 | 336.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54040.t1 | Q9FNE9 | 73.7 | 209 | 53 | 2 | 1 | 207 | 88 | 296 | 2.0e-64 | 246.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54040.t1 | G7I3E6 | 95.2 | 207 | 10 | 0 | 1 | 207 | 83 | 289 | 5.7e-89 | 336.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049989 | MS.gene54040 | 0.815882 | 7.36E-52 | -1.69E-46 |
MS.gene051816 | MS.gene54040 | 0.838645 | 2.54E-57 | -1.69E-46 |
MS.gene051896 | MS.gene54040 | 0.824796 | 6.65E-54 | -1.69E-46 |
MS.gene051914 | MS.gene54040 | 0.802382 | 5.76E-49 | -1.69E-46 |
MS.gene051955 | MS.gene54040 | 0.830886 | 2.28E-55 | -1.69E-46 |
MS.gene052308 | MS.gene54040 | 0.847533 | 1.09E-59 | -1.69E-46 |
MS.gene052367 | MS.gene54040 | 0.854552 | 1.14E-61 | -1.69E-46 |
MS.gene053348 | MS.gene54040 | 0.802199 | 6.28E-49 | -1.69E-46 |
MS.gene053416 | MS.gene54040 | 0.809313 | 2.01E-50 | -1.69E-46 |
MS.gene053417 | MS.gene54040 | 0.80849 | 3.02E-50 | -1.69E-46 |
MS.gene054551 | MS.gene54040 | 0.827751 | 1.32E-54 | -1.69E-46 |
MS.gene054593 | MS.gene54040 | 0.819133 | 1.36E-52 | -1.69E-46 |
MS.gene055308 | MS.gene54040 | 0.849776 | 2.60E-60 | -1.69E-46 |
MS.gene055578 | MS.gene54040 | 0.864325 | 1.32E-64 | -1.69E-46 |
MS.gene055579 | MS.gene54040 | 0.824538 | 7.65E-54 | -1.69E-46 |
MS.gene055957 | MS.gene54040 | 0.83114 | 1.98E-55 | -1.69E-46 |
MS.gene056041 | MS.gene54040 | 0.862183 | 6.07E-64 | -1.69E-46 |
MS.gene05640 | MS.gene54040 | 0.853619 | 2.12E-61 | -1.69E-46 |
MS.gene056528 | MS.gene54040 | 0.809765 | 1.61E-50 | -1.69E-46 |
MS.gene057458 | MS.gene54040 | 0.83388 | 4.14E-56 | -1.69E-46 |
MS.gene058128 | MS.gene54040 | 0.809189 | 2.14E-50 | -1.69E-46 |
MS.gene058853 | MS.gene54040 | 0.838804 | 2.31E-57 | -1.69E-46 |
MS.gene059553 | MS.gene54040 | 0.819097 | 1.39E-52 | -1.69E-46 |
MS.gene059616 | MS.gene54040 | 0.806952 | 6.41E-50 | -1.69E-46 |
MS.gene060473 | MS.gene54040 | 0.849674 | 2.78E-60 | -1.69E-46 |
MS.gene060565 | MS.gene54040 | 0.840136 | 1.04E-57 | -1.69E-46 |
MS.gene06093 | MS.gene54040 | 0.837464 | 5.12E-57 | -1.69E-46 |
MS.gene061099 | MS.gene54040 | 0.849445 | 3.22E-60 | -1.69E-46 |
MS.gene061260 | MS.gene54040 | 0.842344 | 2.74E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 40 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTATATTGCTACGTTTATC+TGG | 0.121333 | 1.1:+11907151 | None:intergenic |
CTTGAAGAAATCAATAATTT+TGG | 0.167292 | 1.1:+11909133 | None:intergenic |
AATATAGCACGTTTCATTAA+TGG | 0.211173 | 1.1:-11907136 | MS.gene54040:CDS |
GCATCCCTTGGCGCCATTCC+AGG | 0.276840 | 1.1:+11908358 | None:intergenic |
CTCCTCTTCAAATCATCATT+TGG | 0.347535 | 1.1:+11908457 | None:intergenic |
GAGAAAGCGGAGTAGTAGTT+TGG | 0.397233 | 1.1:-11908518 | MS.gene54040:CDS |
GTTGTTTATGATCCTGTAGA+AGG | 0.406850 | 1.1:-11907416 | MS.gene54040:CDS |
ACGTTCAAGAACAGGAGAAT+TGG | 0.452094 | 1.1:+11908336 | None:intergenic |
ATTCCTCCACGTTCAAGAAC+AGG | 0.452190 | 1.1:+11908328 | None:intergenic |
AAAGCGGAGTAGTAGTTTGG+TGG | 0.462327 | 1.1:-11908515 | MS.gene54040:CDS |
CGCGTTGACTGCTACTAAAA+CGG | 0.476912 | 1.1:-11908407 | MS.gene54040:CDS |
CTATATTGCTACGTTTATCT+GGG | 0.481139 | 1.1:+11907152 | None:intergenic |
ACAATAATAACAGAATATGT+TGG | 0.490743 | 1.1:-11907271 | MS.gene54040:CDS |
TAACTTGTGCAGAAGTATGA+TGG | 0.493269 | 1.1:-11907465 | MS.gene54040:CDS |
TTCTAATCCTTCACAGTCAC+TGG | 0.505311 | 1.1:-11907182 | MS.gene54040:CDS |
GCATCTAAGATTCTGAATCA+TGG | 0.512650 | 1.1:-11909092 | MS.gene54040:intron |
ATAAGTACTTACCCTTCTAC+AGG | 0.515050 | 1.1:+11907404 | None:intergenic |
ATTAGAACAGATGGCGTCGT+TGG | 0.518768 | 1.1:-11908434 | MS.gene54040:CDS |
ATTCAAAGAAGAAGAGAAAG+CGG | 0.540362 | 1.1:-11908531 | MS.gene54040:CDS |
ACAGGAGAATTGGCATCCCT+TGG | 0.541184 | 1.1:+11908346 | None:intergenic |
TCTTGAACGTGGAGGAATGC+AGG | 0.541405 | 1.1:-11908323 | MS.gene54040:intron |
AAGAATCGGGAATATGATGA+TGG | 0.544853 | 1.1:-11907232 | MS.gene54040:CDS |
AGGAGAATGTCCGCCCCTCA+TGG | 0.545962 | 1.1:-11907438 | MS.gene54040:CDS |
TGCAGAAGTATGATGGAAAG+AGG | 0.546783 | 1.1:-11907458 | MS.gene54040:CDS |
AATGAGCTTACATACATGCC+TGG | 0.552496 | 1.1:-11908376 | MS.gene54040:CDS |
CATGCCTGGAATGGCGCCAA+GGG | 0.555292 | 1.1:-11908362 | MS.gene54040:CDS |
AATTCTCCTGTTCTTGAACG+TGG | 0.561001 | 1.1:-11908334 | MS.gene54040:CDS |
ACATGCCTGGAATGGCGCCA+AGG | 0.581749 | 1.1:-11908363 | MS.gene54040:CDS |
GCTTACATACATGCCTGGAA+TGG | 0.584838 | 1.1:-11908371 | MS.gene54040:CDS |
CAGAATCTTAGATGCATCAA+CGG | 0.589395 | 1.1:+11909100 | None:intergenic |
TGCCAAATGATGATTTGAAG+AGG | 0.592036 | 1.1:-11908459 | MS.gene54040:CDS |
GAAGAGGAGATTAGAACAGA+TGG | 0.593117 | 1.1:-11908443 | MS.gene54040:CDS |
TTGTTTATGATCCTGTAGAA+GGG | 0.614616 | 1.1:-11907415 | MS.gene54040:intron |
TCTGCACAAGTTAAGAGTCT+CGG | 0.617054 | 1.1:+11907475 | None:intergenic |
TCTCCTGTTCTTGAACGTGG+AGG | 0.653986 | 1.1:-11908331 | MS.gene54040:CDS |
GGATCATAAACAACCATGAG+GGG | 0.675550 | 1.1:+11907425 | None:intergenic |
AGGATCATAAACAACCATGA+GGG | 0.678750 | 1.1:+11907424 | None:intergenic |
TCATAAACAACCATGAGGGG+CGG | 0.687468 | 1.1:+11907428 | None:intergenic |
CAGGATCATAAACAACCATG+AGG | 0.703912 | 1.1:+11907423 | None:intergenic |
CAGATGACCAGTGACTGTGA+AGG | 0.718767 | 1.1:+11907175 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAATTTTCTTTTTTTTGT+AGG | - | chr1.1:11908939-11908958 | MS.gene54040:intron | 10.0% |
!! | AAAAAAGAAAATTAAAAGTC+AGG | + | chr1.1:11908935-11908954 | None:intergenic | 15.0% |
!!! | TATTATTGTCAAATCTTTTA+TGG | + | chr1.1:11908987-11909006 | None:intergenic | 15.0% |
!! | ACAATAATAACAGAATATGT+TGG | - | chr1.1:11908998-11909017 | MS.gene54040:intron | 20.0% |
!! | TAATGTTTAGAGAATTTGAT+TGG | - | chr1.1:11907239-11907258 | MS.gene54040:CDS | 20.0% |
!! | TTAATTGAAAAATTCTACTG+TGG | - | chr1.1:11908099-11908118 | MS.gene54040:intron | 20.0% |
!!! | CTTGAAGAAATCAATAATTT+TGG | + | chr1.1:11907139-11907158 | None:intergenic | 20.0% |
!!! | GTTTGTATATATTTTTTCTC+AGG | - | chr1.1:11908753-11908772 | MS.gene54040:intron | 20.0% |
!!! | TTAGGTATTATATTGTTGTT+AGG | - | chr1.1:11907998-11908017 | MS.gene54040:intron | 20.0% |
! | AAAAAAGAAAAGGAAGTTGT+TGG | - | chr1.1:11907781-11907800 | MS.gene54040:intron | 25.0% |
! | AATATAGCACGTTTCATTAA+TGG | - | chr1.1:11909133-11909152 | MS.gene54040:CDS | 25.0% |
!! | ATAACTTTTGTAAGACTGTT+TGG | + | chr1.1:11907632-11907651 | None:intergenic | 25.0% |
!!! | ATAATTTTGGTTTGTACAAG+AGG | + | chr1.1:11907126-11907145 | None:intergenic | 25.0% |
!!! | ATGTAGACTTTTTGAAGAAT+CGG | - | chr1.1:11909023-11909042 | MS.gene54040:intron | 25.0% |
!!! | CTTAATTGAGTTTGTTAGTT+AGG | - | chr1.1:11907980-11907999 | MS.gene54040:intron | 25.0% |
ATTCAAAGAAGAAGAGAAAG+CGG | - | chr1.1:11907738-11907757 | MS.gene54040:intron | 30.0% | |
CTATATTGCTACGTTTATCT+GGG | + | chr1.1:11909120-11909139 | None:intergenic | 30.0% | |
GTTTAGAGAATTTGATTGGA+TGG | - | chr1.1:11907243-11907262 | MS.gene54040:CDS | 30.0% | |
TGAGACATTGAATTGATTGT+TGG | - | chr1.1:11908225-11908244 | MS.gene54040:intron | 30.0% | |
TGCAATACTGAAGTATAAAG+TGG | - | chr1.1:11908580-11908599 | MS.gene54040:intron | 30.0% | |
TGGTGGTTTCAAAAAAGAAA+AGG | - | chr1.1:11907771-11907790 | MS.gene54040:intron | 30.0% | |
TGTTGAGTTATGTTTGTATG+AGG | - | chr1.1:11908071-11908090 | MS.gene54040:intron | 30.0% | |
TTGTTTATGATCCTGTAGAA+GGG | - | chr1.1:11908854-11908873 | MS.gene54040:intron | 30.0% | |
! | ACTTTGTTGCCTTTATTTCT+AGG | + | chr1.1:11908559-11908578 | None:intergenic | 30.0% |
! | TATTGTTGTTAGGATACGTT+TGG | - | chr1.1:11908008-11908027 | MS.gene54040:intron | 30.0% |
! | TCTGTTTTCACAAGCTATTA+TGG | - | chr1.1:11907410-11907429 | MS.gene54040:intron | 30.0% |
! | TTAGGTTGTCAACACTAATT+AGG | - | chr1.1:11908336-11908355 | MS.gene54040:CDS | 30.0% |
!! | AGTTTATACTTTTTGAGAGC+TGG | - | chr1.1:11908394-11908413 | MS.gene54040:CDS | 30.0% |
!! | CTACAAACTAGTTTGGATTT+TGG | - | chr1.1:11908608-11908627 | MS.gene54040:intron | 30.0% |
!! | CTATTTTTCACAACCTATTG+TGG | - | chr1.1:11907481-11907500 | MS.gene54040:CDS | 30.0% |
!! | GAAGTGTGTGTTTTAAATTG+TGG | - | chr1.1:11907708-11907727 | MS.gene54040:intron | 30.0% |
!! | TGTAGACTTTTTGAAGAATC+GGG | - | chr1.1:11909024-11909043 | MS.gene54040:intron | 30.0% |
!! | TTGTTTTGTTGAACTGATAC+TGG | - | chr1.1:11908313-11908332 | MS.gene54040:intron | 30.0% |
!!! | GCTGTTTTTACAAGTTATTG+TGG | - | chr1.1:11907301-11907320 | MS.gene54040:CDS | 30.0% |
AAGAATCGGGAATATGATGA+TGG | - | chr1.1:11909037-11909056 | MS.gene54040:intron | 35.0% | |
AGGATCATAAACAACCATGA+GGG | + | chr1.1:11908848-11908867 | None:intergenic | 35.0% | |
ATAAGTACTTACCCTTCTAC+AGG | + | chr1.1:11908868-11908887 | None:intergenic | 35.0% | |
CAGAATCTTAGATGCATCAA+CGG | + | chr1.1:11907172-11907191 | None:intergenic | 35.0% | |
CTCCTCTTCAAATCATCATT+TGG | + | chr1.1:11907815-11907834 | None:intergenic | 35.0% | |
CTGCACTATTTGTCATGATT+TGG | - | chr1.1:11908635-11908654 | MS.gene54040:intron | 35.0% | |
GACATTGAATTGATTGTTGG+TGG | - | chr1.1:11908228-11908247 | MS.gene54040:intron | 35.0% | |
GAGAATTTGATTGGATGGAT+TGG | - | chr1.1:11907248-11907267 | MS.gene54040:CDS | 35.0% | |
GCAGTGTTACCTAGAAATAA+AGG | - | chr1.1:11908547-11908566 | MS.gene54040:intron | 35.0% | |
GCTATATTGCTACGTTTATC+TGG | + | chr1.1:11909121-11909140 | None:intergenic | 35.0% | |
GCTCTGATAATCTGATTAAG+TGG | + | chr1.1:11908685-11908704 | None:intergenic | 35.0% | |
GTTGTTTATGATCCTGTAGA+AGG | - | chr1.1:11908853-11908872 | MS.gene54040:intron | 35.0% | |
TAATACAAGCGCAATGTCTT+TGG | - | chr1.1:11908447-11908466 | MS.gene54040:CDS | 35.0% | |
TCGTCTTCATTTGTACAACT+AGG | + | chr1.1:11908369-11908388 | None:intergenic | 35.0% | |
TCTCAACTTATGCTCAATGT+AGG | - | chr1.1:11908472-11908491 | MS.gene54040:CDS | 35.0% | |
TGCCAAATGATGATTTGAAG+AGG | - | chr1.1:11907810-11907829 | MS.gene54040:intron | 35.0% | |
! | GCATCTAAGATTCTGAATCA+TGG | - | chr1.1:11907177-11907196 | MS.gene54040:CDS | 35.0% |
! | TAACTTGTGCAGAAGTATGA+TGG | - | chr1.1:11908804-11908823 | MS.gene54040:intron | 35.0% |
! | TAGCTTGTGAAAACAGTTGA+TGG | + | chr1.1:11907537-11907556 | None:intergenic | 35.0% |
! | TGGTTTGTACAAGAGGAAAA+GGG | + | chr1.1:11907119-11907138 | None:intergenic | 35.0% |
! | TTGTTGAACTGATACTGGTT+AGG | - | chr1.1:11908318-11908337 | MS.gene54040:intron | 35.0% |
!! | GCTGTTTTCATAAGCTAATG+TGG | - | chr1.1:11907370-11907389 | MS.gene54040:intron | 35.0% |
!! | TTATACTTTTTGAGAGCTGG+TGG | - | chr1.1:11908397-11908416 | MS.gene54040:CDS | 35.0% |
!! | TTGATTGGATGGATTGGTTT+GGG | - | chr1.1:11907254-11907273 | MS.gene54040:CDS | 35.0% |
!! | TTGGTTTGTACAAGAGGAAA+AGG | + | chr1.1:11907120-11907139 | None:intergenic | 35.0% |
!! | TTTGATTGGATGGATTGGTT+TGG | - | chr1.1:11907253-11907272 | MS.gene54040:CDS | 35.0% |
AATGAGCTTACATACATGCC+TGG | - | chr1.1:11907893-11907912 | MS.gene54040:intron | 40.0% | |
AATTCTCCTGTTCTTGAACG+TGG | - | chr1.1:11907935-11907954 | MS.gene54040:intron | 40.0% | |
ACGTTCAAGAACAGGAGAAT+TGG | + | chr1.1:11907936-11907955 | None:intergenic | 40.0% | |
CAGGATCATAAACAACCATG+AGG | + | chr1.1:11908849-11908868 | None:intergenic | 40.0% | |
GAAGAGGAGATTAGAACAGA+TGG | - | chr1.1:11907826-11907845 | MS.gene54040:intron | 40.0% | |
GGATCATAAACAACCATGAG+GGG | + | chr1.1:11908847-11908866 | None:intergenic | 40.0% | |
GGTCTGTCTACAAACTAGTT+TGG | - | chr1.1:11908601-11908620 | MS.gene54040:intron | 40.0% | |
TCTGCACAAGTTAAGAGTCT+CGG | + | chr1.1:11908797-11908816 | None:intergenic | 40.0% | |
TTCTAATCCTTCACAGTCAC+TGG | - | chr1.1:11909087-11909106 | MS.gene54040:intron | 40.0% | |
TTGCATCTCAATGTGCATGT+TGG | - | chr1.1:11908040-11908059 | MS.gene54040:intron | 40.0% | |
TTTCACATGCTCTCCACAAT+AGG | + | chr1.1:11907497-11907516 | None:intergenic | 40.0% | |
! | CAATGTGCATGTTGGTTGTT+TGG | - | chr1.1:11908048-11908067 | MS.gene54040:intron | 40.0% |
! | TGCAGAAGTATGATGGAAAG+AGG | - | chr1.1:11908811-11908830 | MS.gene54040:intron | 40.0% |
AAAGCGGAGTAGTAGTTTGG+TGG | - | chr1.1:11907754-11907773 | MS.gene54040:intron | 45.0% | |
ATGTTGCCTCTTTGTCGTCA+TGG | - | chr1.1:11908193-11908212 | MS.gene54040:intron | 45.0% | |
ATTAGAACAGATGGCGTCGT+TGG | - | chr1.1:11907835-11907854 | MS.gene54040:intron | 45.0% | |
ATTCCTCCACGTTCAAGAAC+AGG | + | chr1.1:11907944-11907963 | None:intergenic | 45.0% | |
GAGAAAGCGGAGTAGTAGTT+TGG | - | chr1.1:11907751-11907770 | MS.gene54040:intron | 45.0% | |
GCTTACATACATGCCTGGAA+TGG | - | chr1.1:11907898-11907917 | MS.gene54040:intron | 45.0% | |
TCATAAACAACCATGAGGGG+CGG | + | chr1.1:11908844-11908863 | None:intergenic | 45.0% | |
TCTAGGTAACACTGCGTACT+AGG | + | chr1.1:11908542-11908561 | None:intergenic | 45.0% | |
TCTTAGCCATGACGACAAAG+AGG | + | chr1.1:11908202-11908221 | None:intergenic | 45.0% | |
!! | CGCGTTGACTGCTACTAAAA+CGG | - | chr1.1:11907862-11907881 | MS.gene54040:intron | 45.0% |
!! | CGTTTTAGTAGCAGTCAACG+CGG | + | chr1.1:11907864-11907883 | None:intergenic | 45.0% |
ACAGGAGAATTGGCATCCCT+TGG | + | chr1.1:11907926-11907945 | None:intergenic | 50.0% | |
CAGATGACCAGTGACTGTGA+AGG | + | chr1.1:11909097-11909116 | None:intergenic | 50.0% | |
TCTCCTGTTCTTGAACGTGG+AGG | - | chr1.1:11907938-11907957 | MS.gene54040:intron | 50.0% | |
TCTTGAACGTGGAGGAATGC+AGG | - | chr1.1:11907946-11907965 | MS.gene54040:intron | 50.0% | |
ACATGCCTGGAATGGCGCCA+AGG | - | chr1.1:11907906-11907925 | MS.gene54040:intron | 60.0% | |
AGGAGAATGTCCGCCCCTCA+TGG | - | chr1.1:11908831-11908850 | MS.gene54040:intron | 60.0% | |
CATGCCTGGAATGGCGCCAA+GGG | - | chr1.1:11907907-11907926 | MS.gene54040:intron | 60.0% | |
GCATCCCTTGGCGCCATTCC+AGG | + | chr1.1:11907914-11907933 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 11907118 | 11909173 | 11907118 | ID=MS.gene54040 |
chr1.1 | mRNA | 11907118 | 11909173 | 11907118 | ID=MS.gene54040.t1;Parent=MS.gene54040 |
chr1.1 | exon | 11909093 | 11909173 | 11909093 | ID=MS.gene54040.t1.exon1;Parent=MS.gene54040.t1 |
chr1.1 | CDS | 11909093 | 11909173 | 11909093 | ID=cds.MS.gene54040.t1;Parent=MS.gene54040.t1 |
chr1.1 | exon | 11908324 | 11908553 | 11908324 | ID=MS.gene54040.t1.exon2;Parent=MS.gene54040.t1 |
chr1.1 | CDS | 11908324 | 11908553 | 11908324 | ID=cds.MS.gene54040.t1;Parent=MS.gene54040.t1 |
chr1.1 | exon | 11907416 | 11907516 | 11907416 | ID=MS.gene54040.t1.exon3;Parent=MS.gene54040.t1 |
chr1.1 | CDS | 11907416 | 11907516 | 11907416 | ID=cds.MS.gene54040.t1;Parent=MS.gene54040.t1 |
chr1.1 | exon | 11907118 | 11907330 | 11907118 | ID=MS.gene54040.t1.exon4;Parent=MS.gene54040.t1 |
chr1.1 | CDS | 11907118 | 11907330 | 11907118 | ID=cds.MS.gene54040.t1;Parent=MS.gene54040.t1 |
Gene Sequence |
Protein sequence |