Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54210.t1 | XP_003611421.1 | 97.8 | 883 | 6 | 1 | 1 | 870 | 1 | 883 | 0.00E+00 | 1652.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54210.t1 | O04979 | 79.8 | 888 | 160 | 3 | 1 | 870 | 1 | 887 | 0.0e+00 | 1387.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54210.t1 | G7JYP5 | 97.8 | 883 | 6 | 1 | 1 | 870 | 1 | 883 | 0.0e+00 | 1652.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050670 | MS.gene54210 | 0.803688 | 3.09E-49 | -1.69E-46 |
| MS.gene051438 | MS.gene54210 | 0.802034 | 6.79E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene54210 | 0.80862 | 2.83E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene54210 | 0.823846 | 1.11E-53 | -1.69E-46 |
| MS.gene052322 | MS.gene54210 | 0.828988 | 6.62E-55 | -1.69E-46 |
| MS.gene052421 | MS.gene54210 | 0.822227 | 2.65E-53 | -1.69E-46 |
| MS.gene052485 | MS.gene54210 | 0.801701 | 7.95E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene54210 | 0.858496 | 7.92E-63 | -1.69E-46 |
| MS.gene056497 | MS.gene54210 | 0.809358 | 1.97E-50 | -1.69E-46 |
| MS.gene056659 | MS.gene54210 | 0.807555 | 4.77E-50 | -1.69E-46 |
| MS.gene057124 | MS.gene54210 | 0.820191 | 7.81E-53 | -1.69E-46 |
| MS.gene057207 | MS.gene54210 | 0.813668 | 2.28E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene54210 | 0.800953 | 1.13E-48 | -1.69E-46 |
| MS.gene057823 | MS.gene54210 | 0.82094 | 5.26E-53 | -1.69E-46 |
| MS.gene058090 | MS.gene54210 | 0.815197 | 1.05E-51 | -1.69E-46 |
| MS.gene058376 | MS.gene54210 | 0.800939 | 1.14E-48 | -1.69E-46 |
| MS.gene058948 | MS.gene54210 | 0.815783 | 7.75E-52 | -1.69E-46 |
| MS.gene059420 | MS.gene54210 | 0.81328 | 2.77E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene54210 | 0.808461 | 3.06E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene41649 | MS.gene54210 | PPI |
| MS.gene54210 | MS.gene012897 | PPI |
| MS.gene54210 | MS.gene056009 | PPI |
| MS.gene69343 | MS.gene54210 | PPI |
| MS.gene015097 | MS.gene54210 | PPI |
| MS.gene54210 | MS.gene000515 | PPI |
| MS.gene54210 | MS.gene40791 | PPI |
| MS.gene013187 | MS.gene54210 | PPI |
| MS.gene54210 | MS.gene06260 | PPI |
| MS.gene52786 | MS.gene54210 | PPI |
| MS.gene064818 | MS.gene54210 | PPI |
| MS.gene54210 | MS.gene014362 | PPI |
| MS.gene54210 | MS.gene21022 | PPI |
| MS.gene005312 | MS.gene54210 | PPI |
| MS.gene32894 | MS.gene54210 | PPI |
| MS.gene055539 | MS.gene54210 | PPI |
| MS.gene030500 | MS.gene54210 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54210.t1 | MTR_5g013790 | 97.848 | 883 | 6 | 1 | 1 | 870 | 1 | 883 | 0.0 | 1747 |
| MS.gene54210.t1 | MTR_4g099020 | 85.023 | 888 | 115 | 3 | 1 | 870 | 1 | 888 | 0.0 | 1528 |
| MS.gene54210.t1 | MTR_4g099020 | 87.250 | 800 | 99 | 1 | 74 | 870 | 26 | 825 | 0.0 | 1423 |
| MS.gene54210.t1 | MTR_4g099020 | 87.250 | 800 | 99 | 1 | 74 | 870 | 22 | 821 | 0.0 | 1422 |
| MS.gene54210.t1 | MTR_1g084020 | 38.645 | 753 | 385 | 14 | 166 | 858 | 232 | 967 | 1.86e-154 | 478 |
| MS.gene54210.t1 | MTR_1g084030 | 43.599 | 289 | 154 | 5 | 252 | 538 | 69 | 350 | 3.77e-67 | 230 |
| MS.gene54210.t1 | MTR_1g083990 | 40.670 | 209 | 108 | 6 | 656 | 858 | 105 | 303 | 3.07e-38 | 149 |
| MS.gene54210.t1 | MTR_1522s0010 | 32.450 | 151 | 100 | 2 | 384 | 534 | 54 | 202 | 1.62e-17 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54210.t1 | AT5G47040 | 80.904 | 885 | 150 | 3 | 1 | 867 | 1 | 884 | 0.0 | 1425 |
| MS.gene54210.t1 | AT5G26860 | 39.563 | 733 | 404 | 13 | 152 | 858 | 259 | 978 | 3.58e-158 | 488 |
| MS.gene54210.t1 | AT3G05790 | 38.219 | 730 | 401 | 12 | 166 | 858 | 211 | 927 | 5.01e-150 | 465 |
| MS.gene54210.t1 | AT3G05790 | 39.219 | 691 | 377 | 11 | 198 | 858 | 261 | 938 | 1.06e-149 | 465 |
| MS.gene54210.t1 | AT3G05780 | 40.803 | 598 | 327 | 10 | 281 | 859 | 332 | 921 | 5.80e-142 | 444 |
| MS.gene54210.t1 | AT3G05775 | 35.484 | 124 | 57 | 3 | 297 | 420 | 30 | 130 | 6.41e-16 | 75.9 |
Find 234 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTTGCATCTTCCTTTCC+AGG | 0.178687 | 5.1:-6747065 | None:intergenic |
| GTTTAGCAATACTTCCTTTC+AGG | 0.199688 | 5.1:+6744057 | MS.gene54210:CDS |
| GTGACATTTCAAACACATTT+AGG | 0.239227 | 5.1:+6750608 | MS.gene54210:CDS |
| ACCATCGGTGCTAGCCAATT+TGG | 0.273405 | 5.1:+6752707 | MS.gene54210:CDS |
| AAGTCCTTTAAGTTCCTTTC+AGG | 0.285807 | 5.1:-6752672 | None:intergenic |
| CATGGAGCTTATTTCTGTTC+TGG | 0.294413 | 5.1:+6745583 | MS.gene54210:CDS |
| CCTACCTGAAAGGAACTTAA+AGG | 0.295993 | 5.1:+6752668 | MS.gene54210:CDS |
| TGGAAGGACGAAAGTTCTTT+TGG | 0.297337 | 5.1:+6745945 | MS.gene54210:CDS |
| GCATTTAATTCCAAGAGTTC+TGG | 0.305703 | 5.1:+6749825 | MS.gene54210:CDS |
| ATTGGTTGACAGGCACTTAC+AGG | 0.307853 | 5.1:+6746089 | MS.gene54210:CDS |
| GGAAGCTGGTGTTCGAAGTT+TGG | 0.311068 | 5.1:+6750414 | MS.gene54210:CDS |
| GTCCAGTTCAAGCTCTTTGC+TGG | 0.319780 | 5.1:-6748008 | None:intergenic |
| GGGACTTACTACACCACTTC+TGG | 0.321663 | 5.1:+6750522 | MS.gene54210:CDS |
| ATGGAAGTCATTGAGCTTCC+TGG | 0.327888 | 5.1:+6749766 | MS.gene54210:CDS |
| ATGTTGTTCATTGGCATAAC+AGG | 0.340249 | 5.1:+6744662 | MS.gene54210:CDS |
| GGATATCTGTCGGGCTGGTC+TGG | 0.344976 | 5.1:+6751093 | MS.gene54210:CDS |
| AAGGGTGAATTGCATCTTAC+TGG | 0.345401 | 5.1:+6751167 | MS.gene54210:CDS |
| ATCAGAAAACATGGCGGATT+CGG | 0.353303 | 5.1:+6744019 | None:intergenic |
| TCTTGGAATTAAATGCTTCA+TGG | 0.358343 | 5.1:-6749818 | None:intergenic |
| ATCTTCTATTGCTGCTGCTC+TGG | 0.359511 | 5.1:+6748287 | MS.gene54210:CDS |
| CCAGCTGAAGGCCCATCTTT+AGG | 0.362695 | 5.1:-6751734 | None:intergenic |
| AACAGAGTTTACCTCCAAAT+TGG | 0.373480 | 5.1:-6752721 | None:intergenic |
| ACATATATTGGAAGCATGCC+AGG | 0.396135 | 5.1:+6748378 | MS.gene54210:CDS |
| GGAGGATGACCTGGCTGCCC+TGG | 0.397553 | 5.1:+6747047 | MS.gene54210:CDS |
| TTCAGAATGATGTTGTTCAT+TGG | 0.399246 | 5.1:+6744653 | MS.gene54210:CDS |
| TTCGTTGGACCTCCTGGTGT+TGG | 0.400352 | 5.1:+6748249 | MS.gene54210:CDS |
| TCAAGGAGAGGTGGAGGAAT+AGG | 0.402044 | 5.1:-6749739 | None:intergenic |
| TCCCTCTTGTGTTTAGATCC+TGG | 0.404247 | 5.1:-6744895 | None:intergenic |
| GTTTCTCTTCCATCAAACTT+TGG | 0.404295 | 5.1:-6751047 | None:intergenic |
| GGACATAGGAGAACATATAT+TGG | 0.404352 | 5.1:+6748366 | MS.gene54210:CDS |
| AACAACATCATTCTGAACTT+TGG | 0.409435 | 5.1:-6744647 | None:intergenic |
| TAGCAGTTCACGGGCTTACC+TGG | 0.410075 | 5.1:+6747955 | MS.gene54210:CDS |
| ATGCAGCCTCCAAAGTTTGA+TGG | 0.412591 | 5.1:+6751038 | MS.gene54210:intron |
| CCATGTTGGTCCAGAACTCT+TGG | 0.417544 | 5.1:-6749835 | None:intergenic |
| AGCTTTCACTTCGAGAGTTA+AGG | 0.418238 | 5.1:+6747112 | MS.gene54210:CDS |
| GCTTTCAAAAGCAACTGAAT+TGG | 0.419154 | 5.1:+6746071 | MS.gene54210:CDS |
| CGTGACAACATTATGAAATC+CGG | 0.420626 | 5.1:-6745542 | None:intergenic |
| CGATAGCGCTGAAGTGGAAA+TGG | 0.425193 | 5.1:+6750558 | MS.gene54210:CDS |
| TTGTGCTTCGTTGGACCTCC+TGG | 0.426293 | 5.1:+6748243 | MS.gene54210:CDS |
| TGAAGAACAATTATCAATGT+TGG | 0.429291 | 5.1:+6746026 | MS.gene54210:CDS |
| GCAGATCAGCAAGAAGTTCC+AGG | 0.430208 | 5.1:-6747973 | None:intergenic |
| ATACTAGCTGCACATCGATA+TGG | 0.430794 | 5.1:+6752630 | MS.gene54210:CDS |
| ACCTCAAGCAAGGCTGAAGC+TGG | 0.431242 | 5.1:-6749158 | None:intergenic |
| TCTCTTCCATCAAACTTTGG+AGG | 0.433652 | 5.1:-6751044 | None:intergenic |
| CCCTGGGATATCTGTCGGGC+TGG | 0.434416 | 5.1:+6751088 | MS.gene54210:CDS |
| GCTTATTTCTGTTCTGGAGC+AGG | 0.435754 | 5.1:+6745589 | MS.gene54210:CDS |
| TTCCTCCACCTCTCCTTGAC+AGG | 0.440713 | 5.1:+6749743 | MS.gene54210:CDS |
| CAGGAATGCCACAAAATGTC+TGG | 0.441110 | 5.1:+6747088 | MS.gene54210:CDS |
| TCGTTGGACCTCCTGGTGTT+GGG | 0.442977 | 5.1:+6748250 | MS.gene54210:CDS |
| ATAGCTTCATCAACAACAAA+TGG | 0.448887 | 5.1:-6750640 | None:intergenic |
| GGGAAGAGATTCTTGCAGTA+TGG | 0.450131 | 5.1:-6744922 | None:intergenic |
| GGCCAGCAAAGAGCTTGAAC+TGG | 0.452589 | 5.1:+6748006 | MS.gene54210:CDS |
| AAGGATGAGGCTGATATTAG+AGG | 0.453432 | 5.1:+6748345 | MS.gene54210:CDS |
| CAGCTTCCCTGGTATATCTC+TGG | 0.456243 | 5.1:-6750399 | None:intergenic |
| TGACTGGAGAGATGACTTTG+AGG | 0.459709 | 5.1:+6751822 | MS.gene54210:CDS |
| ATATCAGCCAACTTGTGAAC+AGG | 0.461959 | 5.1:-6745976 | None:intergenic |
| TTCTAATCTAGAGATGGAAC+AGG | 0.462301 | 5.1:+6745508 | MS.gene54210:intron |
| CGGCTCAAATTGCACTAACA+TGG | 0.465851 | 5.1:+6751216 | MS.gene54210:CDS |
| TCTTTGCTGGCCTTCTGCCA+TGG | 0.466010 | 5.1:-6747995 | None:intergenic |
| AACACAGGACCTCTTGCATC+TGG | 0.473365 | 5.1:-6748222 | None:intergenic |
| AACCATAGTGATCATTGTCC+AGG | 0.474034 | 5.1:-6748051 | None:intergenic |
| CAGAGATATACCAGGGAAGC+TGG | 0.475812 | 5.1:+6750400 | MS.gene54210:CDS |
| CTATGGTTGAGAAAGTGCTT+GGG | 0.477055 | 5.1:+6750659 | MS.gene54210:CDS |
| AAGAGCAACTGATCTCAAAC+TGG | 0.477594 | 5.1:+6751643 | MS.gene54210:CDS |
| ATTTGTTGTTGATGAAGCTA+TGG | 0.479561 | 5.1:+6750642 | MS.gene54210:CDS |
| TGTGACTTTAGTCACAGCTT+TGG | 0.480340 | 5.1:+6751757 | MS.gene54210:CDS |
| CCCTCTACTCCTTTGCTAAG+TGG | 0.480905 | 5.1:-6750502 | None:intergenic |
| AGAGAAGAGAAAGGGATGAT+TGG | 0.481319 | 5.1:+6744508 | MS.gene54210:CDS |
| AAGATGCAGCCTCAGCAACC+TGG | 0.483411 | 5.1:+6747929 | MS.gene54210:CDS |
| ACATATATAGTTGTTCTTGA+AGG | 0.486468 | 5.1:+6744854 | MS.gene54210:CDS |
| ACTTCGAACACCAGCTTCCC+TGG | 0.487336 | 5.1:-6750410 | None:intergenic |
| GTAACCCCTGGGATATCTGT+CGG | 0.488188 | 5.1:+6751083 | MS.gene54210:CDS |
| AACTTTGCGTGTTGTCTCCA+AGG | 0.491124 | 5.1:-6753020 | None:intergenic |
| TGTTGGTGGTATCAAGGATA+AGG | 0.493185 | 5.1:+6751859 | MS.gene54210:CDS |
| AGAATTTCTTCTGCGCCAGC+AGG | 0.494440 | 5.1:+6746258 | MS.gene54210:CDS |
| CCTAAAGATGGGCCTTCAGC+TGG | 0.495256 | 5.1:+6751734 | MS.gene54210:CDS |
| TCTTCCTTTCCAGGGCAGCC+AGG | 0.495852 | 5.1:-6747056 | None:intergenic |
| GTTTGTGGAGGCTTCAACAA+TGG | 0.498631 | 5.1:+6751139 | MS.gene54210:CDS |
| GTGGAGGCTTCAACAATGGT+AGG | 0.500185 | 5.1:+6751143 | MS.gene54210:CDS |
| GCAGAACGTGTTGTAACCCC+TGG | 0.503121 | 5.1:+6751071 | MS.gene54210:CDS |
| TCACTGCAGCAGCACGAGCA+AGG | 0.503534 | 5.1:-6750453 | None:intergenic |
| AAGAGCTGCACAGGAACGCC+TGG | 0.505014 | 5.1:+6748033 | MS.gene54210:CDS |
| TCTTTAGGTACTGCACCTGC+AGG | 0.506064 | 5.1:-6751719 | None:intergenic |
| GCAGGTGCAGTACCTAAAGA+TGG | 0.507102 | 5.1:+6751722 | MS.gene54210:CDS |
| TAACCCCTGGGATATCTGTC+GGG | 0.507187 | 5.1:+6751084 | MS.gene54210:CDS |
| AAATTTGTGCGCATATCCCT+TGG | 0.508116 | 5.1:+6748315 | MS.gene54210:CDS |
| TCCAAATTGGCTAGCACCGA+TGG | 0.513112 | 5.1:-6752708 | None:intergenic |
| TGCTGATCTGCCATGGCAGA+AGG | 0.514222 | 5.1:+6747985 | MS.gene54210:CDS |
| ACTACCTGTTGGTGGTATCA+AGG | 0.514302 | 5.1:+6751853 | MS.gene54210:CDS |
| TGGTGGAGAAGTTCAGTTTG+TGG | 0.514334 | 5.1:+6751124 | MS.gene54210:CDS |
| TCACGGTTGTTGACACCCAT+TGG | 0.515265 | 5.1:-6750589 | None:intergenic |
| TGGTGATGTGATCAAAGAAT+CGG | 0.515293 | 5.1:+6751196 | MS.gene54210:CDS |
| TTCGTTGCACTTCACCTACC+AGG | 0.516405 | 5.1:+6744114 | MS.gene54210:CDS |
| GACTGGAGAGATGACTTTGA+GGG | 0.516889 | 5.1:+6751823 | MS.gene54210:CDS |
| ATGCCAGGGAGGCTTATAGA+TGG | 0.518627 | 5.1:+6748393 | MS.gene54210:CDS |
| TCTTTATAGAAACAAAGTAC+TGG | 0.521397 | 5.1:+6745922 | MS.gene54210:intron |
| GGCTTCAACAATGGTAGGGA+AGG | 0.522275 | 5.1:+6751148 | MS.gene54210:CDS |
| AGGAACAAAGTTCTCTTACC+TGG | 0.522993 | 5.1:+6744077 | MS.gene54210:CDS |
| AAGCAACTGAATTGGTTGAC+AGG | 0.523403 | 5.1:+6746079 | MS.gene54210:CDS |
| TGGAAGTCATTGAGCTTCCT+GGG | 0.523618 | 5.1:+6749767 | MS.gene54210:CDS |
| GGTCCTGTGTTGTGCTTCGT+TGG | 0.524155 | 5.1:+6748234 | MS.gene54210:CDS |
| AGATCTGATACCGCTATGAC+TGG | 0.524335 | 5.1:+6751806 | MS.gene54210:CDS |
| CTGTGGCAAAGAGAAGAGAA+AGG | 0.524470 | 5.1:+6744499 | MS.gene54210:CDS |
| TATTGAATGTAGTGTGAAGT+TGG | 0.524516 | 5.1:+6744465 | MS.gene54210:intron |
| GGTGAGCATTAATCTGTTGG+AGG | 0.526627 | 5.1:+6751673 | MS.gene54210:CDS |
| AACTTCTTGCTGATCTGCCA+TGG | 0.527979 | 5.1:+6747978 | MS.gene54210:CDS |
| GACTGTTCCTGTTCACAAGT+TGG | 0.528077 | 5.1:+6745969 | MS.gene54210:CDS |
| CGCCTGGACAATGATCACTA+TGG | 0.529644 | 5.1:+6748049 | MS.gene54210:CDS |
| CCTTTAAGTTCCTTTCAGGT+AGG | 0.529882 | 5.1:-6752668 | None:intergenic |
| TGAAAGGAACTTAAAGGACT+TGG | 0.530014 | 5.1:+6752674 | MS.gene54210:CDS |
| TTATCCTTGATACCACCAAC+AGG | 0.532012 | 5.1:-6751857 | None:intergenic |
| AACCTGGGTATAGCAGTTCA+CGG | 0.533035 | 5.1:+6747945 | MS.gene54210:CDS |
| ATGACCTGGCTGCCCTGGAA+AGG | 0.534598 | 5.1:+6747052 | MS.gene54210:CDS |
| CTGGTCTGGACTTCTGTTGG+TGG | 0.535024 | 5.1:+6751107 | MS.gene54210:CDS |
| GGGCTGGTCTGGACTTCTGT+TGG | 0.535931 | 5.1:+6751104 | MS.gene54210:CDS |
| ACTTGTCGATAGCGCTGAAG+TGG | 0.536354 | 5.1:+6750552 | MS.gene54210:CDS |
| ACTTTGCATCTTCCTTTCCA+GGG | 0.537168 | 5.1:-6747064 | None:intergenic |
| AAGAGAACTTTGTTCCTGAA+AGG | 0.538793 | 5.1:-6744071 | None:intergenic |
| TTTGTGCAGATTTAATGTCC+AGG | 0.540417 | 5.1:+6744877 | MS.gene54210:CDS |
| TCCACCTCTCCTTGACAGGA+TGG | 0.542029 | 5.1:+6749747 | MS.gene54210:CDS |
| TGAATACCTAGCCGTTCGTA+AGG | 0.542078 | 5.1:+6748099 | MS.gene54210:CDS |
| TCCACTTAGCAAAGGAGTAG+AGG | 0.545494 | 5.1:+6750501 | MS.gene54210:CDS |
| CACTGCAGCAGCACGAGCAA+GGG | 0.546588 | 5.1:-6750452 | None:intergenic |
| TACCGGTCTTAGTCATCTCA+AGG | 0.548099 | 5.1:-6744943 | None:intergenic |
| TGGTGTTGGGAAAACATCAT+TGG | 0.548490 | 5.1:+6748263 | MS.gene54210:CDS |
| TCAGATGAAGGCTATAAAAG+AGG | 0.548654 | 5.1:+6747002 | MS.gene54210:intron |
| TGCGGTGAGCATTAATCTGT+TGG | 0.551507 | 5.1:+6751670 | MS.gene54210:CDS |
| TCCCTTGAGATGACTAAGAC+CGG | 0.554372 | 5.1:+6744941 | MS.gene54210:CDS |
| TCCAGCTTCAGCCTTGCTTG+AGG | 0.556384 | 5.1:+6749157 | MS.gene54210:CDS |
| CCACTTAGCAAAGGAGTAGA+GGG | 0.557449 | 5.1:+6750502 | MS.gene54210:CDS |
| CTGCTATACCCAGGTTGCTG+AGG | 0.557666 | 5.1:-6747938 | None:intergenic |
| ATACATATACATTTCCCTGC+AGG | 0.560721 | 5.1:+6751704 | MS.gene54210:CDS |
| GAAGCAGCAGTATCACGTAC+TGG | 0.563002 | 5.1:-6744538 | None:intergenic |
| ACCAGCCCGACAGATATCCC+AGG | 0.565995 | 5.1:-6751089 | None:intergenic |
| GAAAGGAAGATGCAAAGTGC+AGG | 0.568446 | 5.1:+6747069 | MS.gene54210:CDS |
| CGAATTCGAATGATAGCACC+AGG | 0.570028 | 5.1:-6744095 | None:intergenic |
| AGTCCATCTATAAGCCTCCC+TGG | 0.570350 | 5.1:-6748396 | None:intergenic |
| TGGAGGCTTCAACAATGGTA+GGG | 0.571399 | 5.1:+6751144 | MS.gene54210:CDS |
| CATATCCCTTGGTGGAGTCA+AGG | 0.571591 | 5.1:+6748326 | MS.gene54210:CDS |
| TCTGCTGAAACTAAGCAACT+TGG | 0.571818 | 5.1:+6744559 | MS.gene54210:CDS |
| TGGAGAAGTTCAGTTTGTGG+AGG | 0.572206 | 5.1:+6751127 | MS.gene54210:CDS |
| TTATAGAAACAAAGTACTGG+TGG | 0.572333 | 5.1:+6745925 | MS.gene54210:intron |
| AGGGGTCTAGTACTACCTGT+TGG | 0.573314 | 5.1:+6751842 | MS.gene54210:CDS |
| ATCCTGTCAAGGAGAGGTGG+AGG | 0.573725 | 5.1:-6749745 | None:intergenic |
| CTAGATGAAATCGACAAGAC+AGG | 0.573743 | 5.1:+6749116 | MS.gene54210:CDS |
| ATTACCTTGGATAGATCGAA+TGG | 0.574554 | 5.1:-6749688 | None:intergenic |
| ATTTCATCTAGCAACATGAC+GGG | 0.574971 | 5.1:-6749104 | None:intergenic |
| GGTCTAGTACTACCTGTTGG+TGG | 0.575809 | 5.1:+6751845 | MS.gene54210:CDS |
| TGAGTTTCTTCAAATTCCGA+AGG | 0.577098 | 5.1:+6749867 | MS.gene54210:CDS |
| ATATATGTGACCCTCCCACT+TGG | 0.578521 | 5.1:-6744839 | None:intergenic |
| ATCGGTGCTAGCCAATTTGG+AGG | 0.578618 | 5.1:+6752710 | MS.gene54210:CDS |
| CAATGACTTCCATCCTGTCA+AGG | 0.579001 | 5.1:-6749756 | None:intergenic |
| AGATGCAGCCTCAGCAACCT+GGG | 0.579158 | 5.1:+6747930 | MS.gene54210:CDS |
| CCAAGAGTTCTGGACCAACA+TGG | 0.579915 | 5.1:+6749835 | MS.gene54210:CDS |
| GGAACAGGTGGAGCATGACC+CGG | 0.582137 | 5.1:+6745523 | MS.gene54210:CDS |
| TTTGTGCGCATATCCCTTGG+TGG | 0.582171 | 5.1:+6748318 | MS.gene54210:CDS |
| TTGCATCTTACTGGACAGCT+TGG | 0.582322 | 5.1:+6751176 | MS.gene54210:CDS |
| TCCATCCTGTCAAGGAGAGG+TGG | 0.584298 | 5.1:-6749748 | None:intergenic |
| TGATCTCAAACTGGCTGCTG+CGG | 0.587312 | 5.1:+6751652 | MS.gene54210:CDS |
| CTCATCCTTGACTCCACCAA+GGG | 0.587588 | 5.1:-6748331 | None:intergenic |
| CAAGTAGTTCCACTTAGCAA+AGG | 0.588005 | 5.1:+6750493 | MS.gene54210:CDS |
| ACCTGGGTATAGCAGTTCAC+GGG | 0.592271 | 5.1:+6747946 | MS.gene54210:CDS |
| CTCGAGCATTACACTTATCG+AGG | 0.592554 | 5.1:+6744804 | MS.gene54210:CDS |
| GTGACAACATTATGAAATCC+GGG | 0.593087 | 5.1:-6745541 | None:intergenic |
| ACTGGACTTAAGAGCTGCAC+AGG | 0.593331 | 5.1:+6748024 | MS.gene54210:CDS |
| CAGGTGCAGTACCTAAAGAT+GGG | 0.595150 | 5.1:+6751723 | MS.gene54210:CDS |
| CTTGGTTGAAGTGCCACCAT+CGG | 0.597442 | 5.1:+6752692 | MS.gene54210:CDS |
| GCTATGGTTGAGAAAGTGCT+TGG | 0.600223 | 5.1:+6750658 | MS.gene54210:CDS |
| GTGAGCATTAATCTGTTGGA+GGG | 0.600831 | 5.1:+6751674 | MS.gene54210:CDS |
| GGCTCAAATTGCACTAACAT+GGG | 0.603498 | 5.1:+6751217 | MS.gene54210:CDS |
| ACTTTGCGTGTTGTCTCCAA+GGG | 0.603690 | 5.1:-6753019 | None:intergenic |
| CCTTGGTGGAGTCAAGGATG+AGG | 0.605860 | 5.1:+6748332 | MS.gene54210:CDS |
| GATACTGCTTGCGAAACGAA+TGG | 0.605902 | 5.1:+6752962 | MS.gene54210:intron |
| TGTGGCAAAGAGAAGAGAAA+GGG | 0.607160 | 5.1:+6744500 | MS.gene54210:CDS |
| TCAATTTAAAGCAACTGCCA+TGG | 0.608110 | 5.1:+6745565 | MS.gene54210:CDS |
| AGAAACAAAGTACTGGTGGA+AGG | 0.610104 | 5.1:+6745929 | MS.gene54210:intron |
| CTGGTGTTCGAAGTTTGGAA+AGG | 0.610258 | 5.1:+6750419 | MS.gene54210:CDS |
| GTCCAGGATCTAAACACAAG+AGG | 0.611069 | 5.1:+6744893 | MS.gene54210:CDS |
| TAATCTAGAGATGGAACAGG+TGG | 0.612364 | 5.1:+6745511 | MS.gene54210:intron |
| CCAGCCCGACAGATATCCCA+GGG | 0.616231 | 5.1:-6751088 | None:intergenic |
| AGAGAGTCATCCTACCTGAA+AGG | 0.617338 | 5.1:+6752658 | MS.gene54210:CDS |
| TTGTTATCCAGAGATATACC+AGG | 0.619097 | 5.1:+6750392 | MS.gene54210:CDS |
| TGATGATGAGGAGGATGACC+TGG | 0.619171 | 5.1:+6747038 | MS.gene54210:CDS |
| AGTAGAGAAACCAAGTGGGA+GGG | 0.619415 | 5.1:+6744829 | MS.gene54210:CDS |
| CAGAACAGAAATAAGCTCCA+TGG | 0.620283 | 5.1:-6745582 | None:intergenic |
| GAGTAGAGAAACCAAGTGGG+AGG | 0.620927 | 5.1:+6744828 | MS.gene54210:CDS |
| ACTAAAGTCACACCAGCTGA+AGG | 0.622524 | 5.1:-6751746 | None:intergenic |
| CATATATTGGAAGCATGCCA+GGG | 0.626234 | 5.1:+6748379 | MS.gene54210:CDS |
| GATTTCATCTAGCAACATGA+CGG | 0.626323 | 5.1:-6749105 | None:intergenic |
| GGAAGTATTGCTAAACGACT+CGG | 0.626468 | 5.1:-6744050 | None:intergenic |
| TAAATGTGTTTGAAATGTCA+CGG | 0.626544 | 5.1:-6750606 | None:intergenic |
| GAGGCTTATAGATGGACTGA+AGG | 0.629475 | 5.1:+6748401 | MS.gene54210:CDS |
| TGACAACCTTACGAACGGCT+AGG | 0.630657 | 5.1:-6748105 | None:intergenic |
| TGTTCCATTCGATCTATCCA+AGG | 0.630979 | 5.1:+6749684 | MS.gene54210:CDS |
| GCTTCAACAATGGTAGGGAA+GGG | 0.631208 | 5.1:+6751149 | MS.gene54210:CDS |
| TCCAGGATCTAAACACAAGA+GGG | 0.632631 | 5.1:+6744894 | MS.gene54210:CDS |
| CAGCTTAAGCCAGATGCAAG+AGG | 0.633930 | 5.1:+6748213 | MS.gene54210:intron |
| TGAAGAAGCATCTACCTGGT+AGG | 0.634508 | 5.1:-6744128 | None:intergenic |
| GCCCGTGAACTGCTATACCC+AGG | 0.634567 | 5.1:-6747947 | None:intergenic |
| TTCATCAACAACAAATGGAG+AGG | 0.635794 | 5.1:-6750635 | None:intergenic |
| ACTCGGTGATAATGATGATG+AGG | 0.635863 | 5.1:+6747026 | MS.gene54210:CDS |
| TCGAGCATTACACTTATCGA+GGG | 0.639262 | 5.1:+6744805 | MS.gene54210:CDS |
| TGATCACTATGGTTTAGAGA+AGG | 0.639775 | 5.1:+6748060 | MS.gene54210:CDS |
| GGTCCAACGAAGCACAACAC+AGG | 0.641264 | 5.1:-6748237 | None:intergenic |
| ACCGGTCTTAGTCATCTCAA+GGG | 0.641791 | 5.1:-6744942 | None:intergenic |
| ACTTCCATCCTGTCAAGGAG+AGG | 0.642275 | 5.1:-6749751 | None:intergenic |
| AAATTGGCTAGCACCGATGG+TGG | 0.642671 | 5.1:-6752705 | None:intergenic |
| ACTCAGAACTCAATCCATGT+TGG | 0.642681 | 5.1:-6749849 | None:intergenic |
| AGGATCAAGAACCTCAAGCA+AGG | 0.643676 | 5.1:-6749168 | None:intergenic |
| CTTTAGGTACTGCACCTGCA+GGG | 0.647269 | 5.1:-6751718 | None:intergenic |
| GGTATTGACAACCTTACGAA+CGG | 0.656181 | 5.1:-6748110 | None:intergenic |
| CCTCATCCTTGACTCCACCA+AGG | 0.656248 | 5.1:-6748332 | None:intergenic |
| GAAATGGAAGTGATACCAAT+GGG | 0.656339 | 5.1:+6750574 | MS.gene54210:CDS |
| CGGTGATAATGATGATGAGG+AGG | 0.657644 | 5.1:+6747029 | MS.gene54210:CDS |
| TATGGTTGAGAAAGTGCTTG+GGG | 0.660924 | 5.1:+6750660 | MS.gene54210:CDS |
| CAGAACGTGTTGTAACCCCT+GGG | 0.661803 | 5.1:+6751072 | MS.gene54210:CDS |
| AGGGGAGTAGAGAAACCAAG+TGG | 0.665723 | 5.1:+6744824 | MS.gene54210:CDS |
| AGGCTGATATTAGAGGACAT+AGG | 0.672911 | 5.1:+6748352 | MS.gene54210:CDS |
| ACTGGAGAGATGACTTTGAG+GGG | 0.676799 | 5.1:+6751824 | MS.gene54210:CDS |
| GTTTAGAGAAGGTCAAGCAG+CGG | 0.681370 | 5.1:+6748071 | MS.gene54210:CDS |
| AAGGCTATAAAAGAGGAACT+CGG | 0.682473 | 5.1:+6747009 | MS.gene54210:CDS |
| CAAACTTCCAAAGTTCATGG+TGG | 0.686043 | 5.1:+6744607 | MS.gene54210:intron |
| AAGACAGGTTCTGATGTTCG+CGG | 0.690453 | 5.1:+6749131 | MS.gene54210:CDS |
| GGAAATGGAAGTGATACCAA+TGG | 0.693833 | 5.1:+6750573 | MS.gene54210:CDS |
| ACTGCTTGCGAAACGAATGG+AGG | 0.694617 | 5.1:+6752965 | MS.gene54210:CDS |
| ATTCTGTTGATGCTAAAGTG+AGG | 0.702267 | 5.1:+6746049 | MS.gene54210:CDS |
| GGGGAGTAGAGAAACCAAGT+GGG | 0.705345 | 5.1:+6744825 | MS.gene54210:CDS |
| GCTTCCTGGGTATACACCCG+AGG | 0.706005 | 5.1:+6749780 | MS.gene54210:CDS |
| TGTTATCCAGAGATATACCA+GGG | 0.708280 | 5.1:+6750393 | MS.gene54210:CDS |
| AGTCATCTCTCCAGTCATAG+CGG | 0.711714 | 5.1:-6751816 | None:intergenic |
| CGAGCATTACACTTATCGAG+GGG | 0.714426 | 5.1:+6744806 | MS.gene54210:CDS |
| ATATTGGAAGCATGCCAGGG+AGG | 0.744417 | 5.1:+6748382 | MS.gene54210:CDS |
| AGTTGGTTGAACAAGAACTG+TGG | 0.782154 | 5.1:+6744482 | MS.gene54210:CDS |
| CAGCCCGACAGATATCCCAG+GGG | 0.819859 | 5.1:-6751087 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 6744029 | 6753046 | 6744029 | ID=MS.gene54210 |
| chr5.1 | mRNA | 6744029 | 6753046 | 6744029 | ID=MS.gene54210.t1;Parent=MS.gene54210 |
| chr5.1 | exon | 6744029 | 6744135 | 6744029 | ID=MS.gene54210.t1.exon1;Parent=MS.gene54210.t1 |
| chr5.1 | CDS | 6744029 | 6744135 | 6744029 | ID=cds.MS.gene54210.t1;Parent=MS.gene54210.t1 |
| chr5.1 | exon | 6744477 | 6744580 | 6744477 | ID=MS.gene54210.t1.exon2;Parent=MS.gene54210.t1 |
| chr5.1 | CDS | 6744477 | 6744580 | 6744477 | ID=cds.MS.gene54210.t1;Parent=MS.gene54210.t1 |
| chr5.1 | exon | 6744620 | 6744683 | 6744620 | ID=MS.gene54210.t1.exon3;Parent=MS.gene54210.t1 |
| chr5.1 | CDS | 6744620 | 6744683 | 6744620 | ID=cds.MS.gene54210.t1;Parent=MS.gene54210.t1 |
| chr5.1 | exon | 6744793 | 6744962 | 6744793 | ID=MS.gene54210.t1.exon4;Parent=MS.gene54210.t1 |
| chr5.1 | CDS | 6744793 | 6744962 | 6744793 | ID=cds.MS.gene54210.t1;Parent=MS.gene54210.t1 |
| chr5.1 | exon | 6745519 | 6745610 | 6745519 | ID=MS.gene54210.t1.exon5;Parent=MS.gene54210.t1 |
| chr5.1 | CDS | 6745519 | 6745610 | 6745519 | ID=cds.MS.gene54210.t1;Parent=MS.gene54210.t1 |
| chr5.1 | exon | 6745931 | 6746110 | 6745931 | ID=MS.gene54210.t1.exon6;Parent=MS.gene54210.t1 |
| chr5.1 | CDS | 6745931 | 6746110 | 6745931 | ID=cds.MS.gene54210.t1;Parent=MS.gene54210.t1 |
| chr5.1 | exon | 6746196 | 6746279 | 6746196 | ID=MS.gene54210.t1.exon7;Parent=MS.gene54210.t1 |
| chr5.1 | CDS | 6746196 | 6746279 | 6746196 | ID=cds.MS.gene54210.t1;Parent=MS.gene54210.t1 |
| chr5.1 | exon | 6747006 | 6747133 | 6747006 | ID=MS.gene54210.t1.exon8;Parent=MS.gene54210.t1 |
| chr5.1 | CDS | 6747006 | 6747133 | 6747006 | ID=cds.MS.gene54210.t1;Parent=MS.gene54210.t1 |
| chr5.1 | exon | 6747919 | 6748120 | 6747919 | ID=MS.gene54210.t1.exon9;Parent=MS.gene54210.t1 |
| chr5.1 | CDS | 6747919 | 6748120 | 6747919 | ID=cds.MS.gene54210.t1;Parent=MS.gene54210.t1 |
| chr5.1 | exon | 6748216 | 6748422 | 6748216 | ID=MS.gene54210.t1.exon10;Parent=MS.gene54210.t1 |
| chr5.1 | CDS | 6748216 | 6748422 | 6748216 | ID=cds.MS.gene54210.t1;Parent=MS.gene54210.t1 |
| chr5.1 | exon | 6749086 | 6749216 | 6749086 | ID=MS.gene54210.t1.exon11;Parent=MS.gene54210.t1 |
| chr5.1 | CDS | 6749086 | 6749216 | 6749086 | ID=cds.MS.gene54210.t1;Parent=MS.gene54210.t1 |
| chr5.1 | exon | 6749675 | 6749888 | 6749675 | ID=MS.gene54210.t1.exon12;Parent=MS.gene54210.t1 |
| chr5.1 | CDS | 6749675 | 6749888 | 6749675 | ID=cds.MS.gene54210.t1;Parent=MS.gene54210.t1 |
| chr5.1 | exon | 6750379 | 6750681 | 6750379 | ID=MS.gene54210.t1.exon13;Parent=MS.gene54210.t1 |
| chr5.1 | CDS | 6750379 | 6750681 | 6750379 | ID=cds.MS.gene54210.t1;Parent=MS.gene54210.t1 |
| chr5.1 | exon | 6751044 | 6751238 | 6751044 | ID=MS.gene54210.t1.exon14;Parent=MS.gene54210.t1 |
| chr5.1 | CDS | 6751044 | 6751238 | 6751044 | ID=cds.MS.gene54210.t1;Parent=MS.gene54210.t1 |
| chr5.1 | exon | 6751635 | 6751880 | 6751635 | ID=MS.gene54210.t1.exon15;Parent=MS.gene54210.t1 |
| chr5.1 | CDS | 6751635 | 6751880 | 6751635 | ID=cds.MS.gene54210.t1;Parent=MS.gene54210.t1 |
| chr5.1 | exon | 6752630 | 6752731 | 6752630 | ID=MS.gene54210.t1.exon16;Parent=MS.gene54210.t1 |
| chr5.1 | CDS | 6752630 | 6752731 | 6752630 | ID=cds.MS.gene54210.t1;Parent=MS.gene54210.t1 |
| chr5.1 | exon | 6752963 | 6753046 | 6752963 | ID=MS.gene54210.t1.exon17;Parent=MS.gene54210.t1 |
| chr5.1 | CDS | 6752963 | 6753046 | 6752963 | ID=cds.MS.gene54210.t1;Parent=MS.gene54210.t1 |
| Gene Sequence |
| Protein sequence |
