Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54696.t1 | KEH36234.1 | 80.9 | 868 | 54 | 9 | 1 | 791 | 1 | 833 | 0.00E+00 | 1246.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54696.t1 | P87137 | 27.3 | 750 | 449 | 20 | 54 | 772 | 242 | 926 | 5.6e-43 | 177.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54696.t1 | A0A072V2H0 | 80.9 | 868 | 54 | 9 | 1 | 791 | 1 | 833 | 0.0e+00 | 1246.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene54696 | MS.gene39202 | PPI |
MS.gene54696 | MS.gene47800 | PPI |
MS.gene54696 | MS.gene46486 | PPI |
MS.gene75013 | MS.gene54696 | PPI |
MS.gene54696 | MS.gene48368 | PPI |
MS.gene003693 | MS.gene54696 | PPI |
MS.gene54696 | MS.gene50744 | PPI |
MS.gene54696 | MS.gene072782 | PPI |
MS.gene029825 | MS.gene54696 | PPI |
MS.gene54696 | MS.gene002256 | PPI |
MS.gene76511 | MS.gene54696 | PPI |
MS.gene36329 | MS.gene54696 | PPI |
MS.gene54696 | MS.gene053381 | PPI |
MS.gene54696 | MS.gene56868 | PPI |
MS.gene54696 | MS.gene65479 | PPI |
MS.gene54696 | MS.gene85127 | PPI |
MS.gene54696 | MS.gene23314 | PPI |
MS.gene02213 | MS.gene54696 | PPI |
MS.gene54696 | MS.gene034624 | PPI |
MS.gene063209 | MS.gene54696 | PPI |
MS.gene060830 | MS.gene54696 | PPI |
MS.gene54696 | MS.gene01229 | PPI |
MS.gene54696 | MS.gene015586 | PPI |
MS.gene54696 | MS.gene019309 | PPI |
MS.gene54696 | MS.gene033253 | PPI |
MS.gene54696 | MS.gene063568 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54696.t1 | MTR_3g113240 | 82.719 | 868 | 38 | 10 | 1 | 791 | 1 | 833 | 0.0 | 1342 |
MS.gene54696.t1 | MTR_7g108730 | 83.333 | 720 | 98 | 6 | 94 | 792 | 153 | 871 | 0.0 | 1146 |
MS.gene54696.t1 | MTR_7g108730 | 78.000 | 100 | 21 | 1 | 1 | 100 | 1 | 99 | 1.29e-21 | 101 |
MS.gene54696.t1 | MTR_8g058740 | 76.454 | 361 | 69 | 6 | 79 | 424 | 11 | 370 | 2.02e-168 | 491 |
MS.gene54696.t1 | MTR_7g091790 | 47.081 | 531 | 191 | 15 | 1 | 479 | 1 | 493 | 5.89e-101 | 327 |
MS.gene54696.t1 | MTR_7g091790 | 67.539 | 191 | 49 | 3 | 589 | 771 | 493 | 678 | 4.16e-76 | 260 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54696.t1 | AT4G02400 | 46.609 | 693 | 331 | 12 | 104 | 778 | 146 | 817 | 8.15e-179 | 535 |
MS.gene54696.t1 | AT5G08600 | 40.767 | 834 | 384 | 22 | 19 | 778 | 6 | 803 | 1.32e-164 | 497 |
MS.gene54696.t1 | AT5G08600 | 43.123 | 698 | 339 | 15 | 104 | 778 | 154 | 816 | 3.43e-163 | 494 |
MS.gene54696.t1 | AT5G08600 | 35.127 | 632 | 313 | 20 | 19 | 589 | 6 | 601 | 4.12e-82 | 275 |
Find 157 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCGTAACGTTTATTCTTTC+TGG | 0.065096 | 6.1:+3865287 | None:intergenic |
AATCCATTATTCAGAGAAAT+AGG | 0.194787 | 6.1:-3864957 | MS.gene54696:CDS |
ATGAAAATGCCCGGAGAAAA+AGG | 0.207576 | 6.1:-3862211 | MS.gene54696:CDS |
CCTCTGGCATTCTTGTTTCA+TGG | 0.226912 | 6.1:+3864149 | None:intergenic |
CCATGTATCTGAGGCAAATA+TGG | 0.232475 | 6.1:+3862787 | None:intergenic |
TATTATCAGCATCAATTGTT+TGG | 0.238103 | 6.1:+3863127 | None:intergenic |
ACCAGTGGCAGAAGAGTATT+TGG | 0.264337 | 6.1:-3863162 | MS.gene54696:CDS |
AACAATTGATGCTGATAATA+AGG | 0.265245 | 6.1:-3863124 | MS.gene54696:CDS |
GCCTCTATTACTTCCTGGTT+GGG | 0.275808 | 6.1:-3862267 | MS.gene54696:CDS |
AACTGAATTTGAGGGGAAAA+TGG | 0.284499 | 6.1:-3864851 | MS.gene54696:CDS |
ACCTTTACATTGTGCCTAAC+AGG | 0.290720 | 6.1:+3862581 | None:intergenic |
TAATAAATAATTACCATAAA+AGG | 0.293996 | 6.1:+3863725 | None:intergenic |
CTCCCTATTTCTCTGAATAA+TGG | 0.295816 | 6.1:+3864954 | None:intergenic |
CTTCCATGCAGTTGTCGTTT+TGG | 0.302586 | 6.1:+3865242 | None:intergenic |
TTCCCCTCAAATTCAGTTAT+GGG | 0.307626 | 6.1:+3864856 | None:intergenic |
CAAAGTTTCCTAGGCCTGTT+AGG | 0.313121 | 6.1:-3862595 | MS.gene54696:CDS |
CTTTAACAAACGATATGTTT+TGG | 0.315476 | 6.1:+3864236 | None:intergenic |
GATAAGGCACCGTTCTTGTT+AGG | 0.322177 | 6.1:+3861189 | None:intergenic |
TCTAACCCGGCGACCTCATT+TGG | 0.324171 | 6.1:-3861110 | MS.gene54696:CDS |
TTTGATGAAAAGACAGATCT+AGG | 0.330885 | 6.1:-3864916 | MS.gene54696:CDS |
TGCCTCAGATACATGGAAAA+AGG | 0.332114 | 6.1:-3862780 | MS.gene54696:intron |
CGTTCTTGTTAGGAGTTTCT+CGG | 0.336293 | 6.1:+3861199 | None:intergenic |
GCATATTCATTAGCAGCTTC+AGG | 0.339373 | 6.1:+3864171 | None:intergenic |
ACCTTTGCATGATCTGCCTT+TGG | 0.351781 | 6.1:+3865030 | None:intergenic |
ATTATCAGCATCAATTGTTT+GGG | 0.354675 | 6.1:+3863128 | None:intergenic |
GTATTATCATTGACAGATAC+AGG | 0.356249 | 6.1:+3865264 | None:intergenic |
AAGACATCTTTGGAAGTATA+AGG | 0.356256 | 6.1:+3861167 | None:intergenic |
TACTTCCTGGTTGGGGCCAA+TGG | 0.359381 | 6.1:-3862259 | MS.gene54696:CDS |
TTTCCCCTCAAATTCAGTTA+TGG | 0.362536 | 6.1:+3864855 | None:intergenic |
GAGCGTCTTGAAGAGTATTA+AGG | 0.363299 | 6.1:+3865124 | None:intergenic |
GAAAGCAAAGTCTTCTCAAT+TGG | 0.372428 | 6.1:-3864202 | MS.gene54696:CDS |
AACCGAAGTCTTGAATGTTC+AGG | 0.382729 | 6.1:+3865102 | None:intergenic |
GAAAAGCCTCTATTACTTCC+TGG | 0.384381 | 6.1:-3862272 | MS.gene54696:CDS |
ATTCTTTCTGGACTCTTCCT+CGG | 0.385313 | 6.1:+3865299 | None:intergenic |
CTTACTTCAGGTTGAGTAAG+AGG | 0.400133 | 6.1:+3861086 | None:intergenic |
AGAATCCTCCAGCTTCTTCA+TGG | 0.403400 | 6.1:+3863215 | None:intergenic |
ATGAAGAAGCTGGAGGATTC+TGG | 0.409963 | 6.1:-3863213 | MS.gene54696:CDS |
TCGATTTCATTTACATCGAC+AGG | 0.410551 | 6.1:+3865354 | None:intergenic |
TATAAAACCGATAGAATTTG+AGG | 0.410968 | 6.1:-3860674 | MS.gene54696:CDS |
CCATATTTGCCTCAGATACA+TGG | 0.414348 | 6.1:-3862787 | MS.gene54696:CDS |
GCATGATCTGCCTTTGGAAG+TGG | 0.425148 | 6.1:+3865036 | None:intergenic |
CGCTGATTCTGATCTGGATA+AGG | 0.425923 | 6.1:-3863837 | MS.gene54696:CDS |
GAGGTCGCCGGGTTAGATTC+AGG | 0.426269 | 6.1:+3861116 | None:intergenic |
AGAGAGGCGACGCCAACAAC+CGG | 0.431744 | 6.1:-3865485 | MS.gene54696:CDS |
AAAGTCTTCTCAATTGGAAA+TGG | 0.431883 | 6.1:-3864196 | MS.gene54696:CDS |
ATAAGAAGGATATGCAAAAC+CGG | 0.432634 | 6.1:-3864326 | MS.gene54696:CDS |
TAACGCTCCGATGCCCTTGA+GGG | 0.437631 | 6.1:+3860644 | None:intergenic |
AGAAGTCTTCAAAGTTTCCT+AGG | 0.438743 | 6.1:-3862604 | MS.gene54696:CDS |
TTCTTTCTGGACTCTTCCTC+GGG | 0.461414 | 6.1:+3865300 | None:intergenic |
ACTCTGATGAAAGACATCTT+TGG | 0.462745 | 6.1:+3861157 | None:intergenic |
CAGATCATGCAAAGGTAGAA+AGG | 0.463747 | 6.1:-3865023 | MS.gene54696:CDS |
ACAAAAGACGCAAGAAGTGC+TGG | 0.467509 | 6.1:-3863789 | MS.gene54696:CDS |
ATCCATTATTCAGAGAAATA+GGG | 0.469009 | 6.1:-3864956 | MS.gene54696:CDS |
TGAACCCATAACTGAATTTG+AGG | 0.473421 | 6.1:-3864860 | MS.gene54696:CDS |
ACATTGTGCCTAACAGGCCT+AGG | 0.473930 | 6.1:+3862587 | None:intergenic |
GAATACCGCTGATTCTGATC+TGG | 0.476904 | 6.1:-3863843 | MS.gene54696:CDS |
CGAAGATTCCATGAAGAAGC+TGG | 0.481750 | 6.1:-3863223 | MS.gene54696:CDS |
AATAATTACCATAAAAGGTA+AGG | 0.486941 | 6.1:+3863730 | None:intergenic |
TTCACTTCCTCAAATTCTAT+CGG | 0.487647 | 6.1:+3860667 | None:intergenic |
AGCCTCTATTACTTCCTGGT+TGG | 0.491394 | 6.1:-3862268 | MS.gene54696:CDS |
CAGAGTATGCGTATGCCCAT+TGG | 0.493073 | 6.1:-3861140 | MS.gene54696:CDS |
TGAGATGGAAGTTCATAAGA+TGG | 0.495179 | 6.1:+3862392 | None:intergenic |
TCCAAATACTCTTCTGCCAC+TGG | 0.496738 | 6.1:+3863161 | None:intergenic |
GATGATAAAATGCCTAAGTC+GGG | 0.497123 | 6.1:-3863761 | MS.gene54696:CDS |
CCATTTGTATATCAGTCCAT+TGG | 0.497470 | 6.1:+3862243 | None:intergenic |
GAATTATTATATTCAGACTC+TGG | 0.500495 | 6.1:+3865195 | None:intergenic |
TCATTTACATCGACAGGGGT+AGG | 0.501041 | 6.1:+3865360 | None:intergenic |
CCCCAACCAGGAAGTAATAG+AGG | 0.502588 | 6.1:+3862266 | None:intergenic |
ATCACTGCTGTTACTGTCCA+TGG | 0.508967 | 6.1:+3863892 | None:intergenic |
TTAACGCTCCGATGCCCTTG+AGG | 0.508976 | 6.1:+3860643 | None:intergenic |
CGGGTTAGATTCAGGTCCAA+TGG | 0.510095 | 6.1:+3861124 | None:intergenic |
AAGTGGCAACATTGAGAATG+AGG | 0.513026 | 6.1:-3863043 | MS.gene54696:CDS |
ACATATATACCTCCGCCCTC+TGG | 0.515874 | 6.1:+3864133 | None:intergenic |
GGCTCTGCAATTTAGCAGCC+CGG | 0.517705 | 6.1:+3864307 | None:intergenic |
TGGTGGCGAGGATGACTTTG+AGG | 0.517794 | 6.1:-3863073 | MS.gene54696:CDS |
GGTTACTATAGAAGATAAGA+AGG | 0.519918 | 6.1:-3864340 | MS.gene54696:CDS |
CATTTACATCGACAGGGGTA+GGG | 0.523149 | 6.1:+3865361 | None:intergenic |
AAGAAGTTGAATAGAACCTA+AGG | 0.526680 | 6.1:-3860616 | None:intergenic |
TTGATGAAAAGACAGATCTA+GGG | 0.527190 | 6.1:-3864915 | MS.gene54696:CDS |
CCAATGGACTGATATACAAA+TGG | 0.528564 | 6.1:-3862243 | MS.gene54696:CDS |
GAGGTCCAAATGAGGTCGCC+GGG | 0.530846 | 6.1:+3861105 | None:intergenic |
TCTTTGGAAGTATAAGGATA+AGG | 0.530900 | 6.1:+3861173 | None:intergenic |
GCAACGTGGTTTAGATAAGC+AGG | 0.535280 | 6.1:-3863984 | MS.gene54696:CDS |
CGATGAAGGCAATCGAGGAC+AGG | 0.535786 | 6.1:+3865410 | None:intergenic |
CCTCTATTACTTCCTGGTTG+GGG | 0.538597 | 6.1:-3862266 | MS.gene54696:CDS |
GCCTGTTAGGCACAATGTAA+AGG | 0.539141 | 6.1:-3862582 | MS.gene54696:intron |
AGAAGACTTCCGACAATCAA+CGG | 0.539952 | 6.1:-3865440 | MS.gene54696:CDS |
AGATGATAAAATGCCTAAGT+CGG | 0.540444 | 6.1:-3863762 | MS.gene54696:CDS |
AAGGATAGCAATCCCGACTT+AGG | 0.541626 | 6.1:+3863749 | None:intergenic |
GACTTTGAGGCCAAGAAAAG+TGG | 0.542359 | 6.1:-3863060 | MS.gene54696:CDS |
GAACCCATAACTGAATTTGA+GGG | 0.544307 | 6.1:-3864859 | MS.gene54696:CDS |
CGATTTCATTTACATCGACA+GGG | 0.544598 | 6.1:+3865355 | None:intergenic |
CGAATGAGCTCCTCTTGAGA+TGG | 0.547007 | 6.1:+3862377 | None:intergenic |
GGGTTAGATTCAGGTCCAAT+GGG | 0.550457 | 6.1:+3861125 | None:intergenic |
AGAAGCTCTCAAGAAGAGAA+AGG | 0.552133 | 6.1:-3862186 | MS.gene54696:CDS |
AGAGGTCCAAATGAGGTCGC+CGG | 0.553221 | 6.1:+3861104 | None:intergenic |
TGTTGTATAGATGCGTGGAT+TGG | 0.554770 | 6.1:-3863298 | MS.gene54696:intron |
AAGTGAACCCTCAAGGGCAT+CGG | 0.554780 | 6.1:-3860651 | MS.gene54696:CDS |
TGATGGACATATTAGTATTG+AGG | 0.557901 | 6.1:-3865151 | MS.gene54696:CDS |
TGTTCATGCACCACTTCCAA+AGG | 0.560412 | 6.1:-3865046 | MS.gene54696:CDS |
CTTCGTATTCTTGTACAGCA+AGG | 0.561676 | 6.1:+3863241 | None:intergenic |
CATGATGTTGTGGAAGGTGA+TGG | 0.563306 | 6.1:-3865168 | MS.gene54696:CDS |
CTCTGAGAAATCAAGCAAGA+AGG | 0.565144 | 6.1:-3862138 | MS.gene54696:intron |
ACAAGAATGCCAGAGGGCGG+AGG | 0.568314 | 6.1:-3864142 | MS.gene54696:intron |
GATGAAGGACTGATGGTGGA+TGG | 0.571626 | 6.1:-3862437 | MS.gene54696:CDS |
CTCCTGAACATTCAAGACTT+CGG | 0.573966 | 6.1:-3865104 | MS.gene54696:CDS |
TCAAAGAACATGAAAATGCC+CGG | 0.574137 | 6.1:-3862220 | MS.gene54696:CDS |
AACCCATAACTGAATTTGAG+GGG | 0.576762 | 6.1:-3864858 | MS.gene54696:CDS |
TTTGAGGAAGTGAACCCTCA+AGG | 0.578897 | 6.1:-3860658 | MS.gene54696:CDS |
TAATTCTAGTCATGATGTTG+TGG | 0.584821 | 6.1:-3865178 | MS.gene54696:CDS |
TTATGAACTTCCATCTCAAG+AGG | 0.584960 | 6.1:-3862387 | MS.gene54696:CDS |
GAGAAGAAGCGAAAGGAGAG+AGG | 0.585833 | 6.1:-3865501 | MS.gene54696:CDS |
AAATACTCTTCTGCCACTGG+TGG | 0.587137 | 6.1:+3863164 | None:intergenic |
TTCAACGATGAAGGCAATCG+AGG | 0.587673 | 6.1:+3865405 | None:intergenic |
TTGAGGAAGTGAACCCTCAA+GGG | 0.590084 | 6.1:-3860657 | MS.gene54696:CDS |
GATAGCGATACAGATGATGA+AGG | 0.593448 | 6.1:-3862452 | MS.gene54696:CDS |
TCAGTCCATTGGCCCCAACC+AGG | 0.596201 | 6.1:+3862254 | None:intergenic |
TGATGATAGCACTTATGAAG+AGG | 0.598360 | 6.1:-3863873 | MS.gene54696:CDS |
TTGCAATAACAGTGGTGGCG+AGG | 0.598885 | 6.1:-3863085 | MS.gene54696:CDS |
CATTGGACCTGAATCTAACC+CGG | 0.599340 | 6.1:-3861123 | MS.gene54696:CDS |
TCAGACTCTGGATATAGAGT+CGG | 0.604014 | 6.1:+3865207 | None:intergenic |
CATGGCAGAGAAGAAGCGAA+AGG | 0.604170 | 6.1:-3865508 | MS.gene54696:CDS |
CGAGAAACTCCTAACAAGAA+CGG | 0.604958 | 6.1:-3861198 | MS.gene54696:CDS |
TCATGCAAAGGTAGAAAGGA+AGG | 0.607147 | 6.1:-3865019 | MS.gene54696:CDS |
ATACCAAAACGACAACTGCA+TGG | 0.611027 | 6.1:-3865245 | MS.gene54696:CDS |
TCTTTGAAAATGTTCACTCA+CGG | 0.617431 | 6.1:+3863943 | None:intergenic |
GTGCAGGTGGTGAAGAAACC+AGG | 0.621465 | 6.1:-3860703 | MS.gene54696:intron |
AATTGATGCTGATAATAAGG+TGG | 0.623054 | 6.1:-3863121 | MS.gene54696:CDS |
GGGAAGTGATCATCTGCAGA+AGG | 0.630064 | 6.1:-3863022 | MS.gene54696:CDS |
TTGAGTAAGAGGTCCAAATG+AGG | 0.635106 | 6.1:+3861097 | None:intergenic |
AGATGATGAAGGACTGATGG+TGG | 0.637774 | 6.1:-3862441 | MS.gene54696:CDS |
TTTGTTGTTGTATAGATGCG+TGG | 0.641713 | 6.1:-3863303 | MS.gene54696:intron |
TGGCAGAAGAGTATTTGGAA+TGG | 0.644354 | 6.1:-3863157 | MS.gene54696:CDS |
TACAGATGATGAAGGACTGA+TGG | 0.645648 | 6.1:-3862444 | MS.gene54696:CDS |
TAAGAAGGATATGCAAAACC+GGG | 0.648433 | 6.1:-3864325 | MS.gene54696:CDS |
ATTCAAGCTCATAATAACGA+TGG | 0.652015 | 6.1:-3864802 | MS.gene54696:CDS |
AGTGGCAACATTGAGAATGA+GGG | 0.656546 | 6.1:-3863042 | MS.gene54696:CDS |
TCCAAAGGCAGATCATGCAA+AGG | 0.660636 | 6.1:-3865031 | MS.gene54696:CDS |
GAAACAAGAATGCCAGAGGG+CGG | 0.662476 | 6.1:-3864145 | MS.gene54696:CDS |
CCATGAAACAAGAATGCCAG+AGG | 0.671419 | 6.1:-3864149 | MS.gene54696:CDS |
TCTAGTCATGATGTTGTGGA+AGG | 0.674139 | 6.1:-3865174 | MS.gene54696:CDS |
GGTTTAGATAAGCAGGACGT+AGG | 0.675317 | 6.1:-3863977 | MS.gene54696:CDS |
AAGAAGCTGGAGGATTCTGG+TGG | 0.675800 | 6.1:-3863210 | MS.gene54696:CDS |
TATTATCATTGACAGATACA+GGG | 0.675816 | 6.1:+3865265 | None:intergenic |
AGATTCCATGAAGAAGCTGG+AGG | 0.681890 | 6.1:-3863220 | MS.gene54696:CDS |
CATGAAACAAGAATGCCAGA+GGG | 0.683284 | 6.1:-3864148 | MS.gene54696:CDS |
CATTATTCAGAGAAATAGGG+AGG | 0.684009 | 6.1:-3864953 | MS.gene54696:CDS |
CAAAGAAACAAGTCACAAGG+TGG | 0.684255 | 6.1:-3864981 | MS.gene54696:CDS |
AAAGACGCAAGAAGTGCTGG+AGG | 0.685982 | 6.1:-3863786 | MS.gene54696:CDS |
ATACGAAGAAGAACTACCCG+AGG | 0.689446 | 6.1:-3865316 | MS.gene54696:CDS |
GACGCCAACAACCGGCACAG+CGG | 0.689932 | 6.1:-3865477 | MS.gene54696:CDS |
TATCAAAGAAACAAGTCACA+AGG | 0.695225 | 6.1:-3864984 | MS.gene54696:CDS |
CTTATCCAGATCAGAATCAG+CGG | 0.697066 | 6.1:+3863838 | None:intergenic |
TGCAAAGGTAGAAAGGAAGG+TGG | 0.702266 | 6.1:-3865016 | MS.gene54696:CDS |
TCAAAAGTAGCATCCACCAG+TGG | 0.708282 | 6.1:-3863177 | MS.gene54696:CDS |
GATTTCATTTACATCGACAG+GGG | 0.715496 | 6.1:+3865356 | None:intergenic |
CTTCAGCGTAAAATGCAACG+TGG | 0.719561 | 6.1:-3863998 | MS.gene54696:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATAAATAATTACCATAAA+AGG | + | chr6.1:3862403-3862422 | None:intergenic | 10.0% |
!! | AAAAAAAAAAAGCTCTTAAT+TGG | - | chr6.1:3865285-3865304 | MS.gene54696:CDS | 15.0% |
!! | AGAACATATATTACTTAAAA+AGG | + | chr6.1:3862552-3862571 | None:intergenic | 15.0% |
!! | ATGATAAACACAAAAATAAA+AGG | + | chr6.1:3865098-3865117 | None:intergenic | 15.0% |
!! | TATATAATTTAGTGTATGTT+CGG | - | chr6.1:3864487-3864506 | MS.gene54696:intron | 15.0% |
!!! | ATTACAAACAGATAAATTTT+CGG | + | chr6.1:3862670-3862689 | None:intergenic | 15.0% |
!!! | TATTTACTGATAATGATAAT+GGG | - | chr6.1:3863461-3863480 | MS.gene54696:intron | 15.0% |
!!! | TTATTTACTGATAATGATAA+TGG | - | chr6.1:3863460-3863479 | MS.gene54696:intron | 15.0% |
!! | AAAACAATAAAAATACTGAG+AGG | + | chr6.1:3861658-3861677 | None:intergenic | 20.0% |
!! | AATAATTACCATAAAAGGTA+AGG | + | chr6.1:3862398-3862417 | None:intergenic | 20.0% |
!! | ATGAGATTGTAAAAAATCTT+GGG | - | chr6.1:3863293-3863312 | MS.gene54696:intron | 20.0% |
!! | CATAATATATGCAATGTTTA+GGG | - | chr6.1:3865240-3865259 | MS.gene54696:CDS | 20.0% |
!! | GATAGAGATTACATTTAAAT+AGG | - | chr6.1:3861477-3861496 | MS.gene54696:intron | 20.0% |
!! | TATAACATTACAAAGATTTG+TGG | - | chr6.1:3864175-3864194 | MS.gene54696:CDS | 20.0% |
!! | TATATAAAGTCCAAAATCAA+AGG | - | chr6.1:3864395-3864414 | MS.gene54696:intron | 20.0% |
!! | TCATATACAACAAAAAACAA+TGG | + | chr6.1:3861756-3861775 | None:intergenic | 20.0% |
!!! | AGAGCTTTTTTTTTTTTTTG+TGG | + | chr6.1:3865281-3865300 | None:intergenic | 20.0% |
!!! | AGATGTTTGTTTTACTTAAT+GGG | - | chr6.1:3863222-3863241 | MS.gene54696:CDS | 20.0% |
!!! | ATAATTGATTTTGACATGTT+TGG | - | chr6.1:3864549-3864568 | MS.gene54696:intron | 20.0% |
!!! | TATAGAAGATGATTTTGAAA+AGG | - | chr6.1:3863792-3863811 | MS.gene54696:CDS | 20.0% |
!!! | TGATTAATTTCCTTTTTTCT+TGG | - | chr6.1:3863192-3863211 | MS.gene54696:CDS | 20.0% |
!!! | TGATTGATGTTTTTTAACAT+CGG | - | chr6.1:3864136-3864155 | MS.gene54696:intron | 20.0% |
!!! | TGGTTTTGATTTTATTCTTT+TGG | - | chr6.1:3864893-3864912 | MS.gene54696:CDS | 20.0% |
!!! | TTTGTTTTTATATCTGTGAT+CGG | - | chr6.1:3863381-3863400 | MS.gene54696:intron | 20.0% |
! | AAAGTAAAGTGGTTTATGTT+TGG | + | chr6.1:3864704-3864723 | None:intergenic | 25.0% |
! | AAAGTGAATTGAAAGTAAAG+TGG | + | chr6.1:3864715-3864734 | None:intergenic | 25.0% |
! | AAATATATTCTTGTATGTGC+AGG | - | chr6.1:3865406-3865425 | MS.gene54696:CDS | 25.0% |
! | AACAATTGATGCTGATAATA+AGG | - | chr6.1:3863001-3863020 | MS.gene54696:CDS | 25.0% |
! | AAGTAGGTAAGAGTAATATT+TGG | - | chr6.1:3865143-3865162 | MS.gene54696:CDS | 25.0% |
! | AATAAAAATACTGAGAGGAA+AGG | + | chr6.1:3861653-3861672 | None:intergenic | 25.0% |
! | AATATATGTTCTATTGACAC+TGG | - | chr6.1:3862560-3862579 | MS.gene54696:intron | 25.0% |
! | AATCCATTATTCAGAGAAAT+AGG | - | chr6.1:3861168-3861187 | MS.gene54696:CDS | 25.0% |
! | AATTAAGAGCTTTACTACAA+AGG | + | chr6.1:3865177-3865196 | None:intergenic | 25.0% |
! | ATATATGTCTTCATCATAGT+TGG | + | chr6.1:3862598-3862617 | None:intergenic | 25.0% |
! | ATCCATTATTCAGAGAAATA+GGG | - | chr6.1:3861169-3861188 | MS.gene54696:CDS | 25.0% |
! | ATTATCAGCATCAATTGTTT+GGG | + | chr6.1:3863000-3863019 | None:intergenic | 25.0% |
! | ATTGTATCTTTCTACATAGT+TGG | + | chr6.1:3861690-3861709 | None:intergenic | 25.0% |
! | CTCTTACCTACTTTAAATAA+AGG | + | chr6.1:3865136-3865155 | None:intergenic | 25.0% |
! | GAATAGAAAAATGTATACCA+TGG | - | chr6.1:3862216-3862235 | MS.gene54696:CDS | 25.0% |
! | GAATTATTATATTCAGACTC+TGG | + | chr6.1:3860933-3860952 | None:intergenic | 25.0% |
! | GATGAGATTGTAAAAAATCT+TGG | - | chr6.1:3863292-3863311 | MS.gene54696:intron | 25.0% |
! | GCATAATATATGCAATGTTT+AGG | - | chr6.1:3865239-3865258 | MS.gene54696:CDS | 25.0% |
! | TATAAAACCGATAGAATTTG+AGG | - | chr6.1:3865451-3865470 | MS.gene54696:CDS | 25.0% |
! | TATTATCAGCATCAATTGTT+TGG | + | chr6.1:3863001-3863020 | None:intergenic | 25.0% |
! | TATTATCATTGACAGATACA+GGG | + | chr6.1:3860863-3860882 | None:intergenic | 25.0% |
! | TCATTTCATTACGAAAAAGA+AGG | + | chr6.1:3861842-3861861 | None:intergenic | 25.0% |
! | TTAACATCACTAAAGATTTG+TGG | - | chr6.1:3864241-3864260 | MS.gene54696:CDS | 25.0% |
! | TTTGTAGTAAAGCTCTTAAT+TGG | - | chr6.1:3865176-3865195 | MS.gene54696:CDS | 25.0% |
!! | ATATATCTTTTGCACATGTT+TGG | - | chr6.1:3862612-3862631 | MS.gene54696:CDS | 25.0% |
!! | ATTTTCTGCTATTCCAAATA+TGG | - | chr6.1:3862688-3862707 | MS.gene54696:intron | 25.0% |
!! | CTTTAACAAACGATATGTTT+TGG | + | chr6.1:3861892-3861911 | None:intergenic | 25.0% |
!! | GAAACTTCATATGTAGTTTT+TGG | + | chr6.1:3863319-3863338 | None:intergenic | 25.0% |
!! | TTGCAAATCAATAATTTGCA+AGG | + | chr6.1:3861611-3861630 | None:intergenic | 25.0% |
!! | TTTATTCTTTTGGATATGAC+AGG | - | chr6.1:3864903-3864922 | MS.gene54696:CDS | 25.0% |
!!! | AGGTTTTTTCCAATCATAAA+AGG | + | chr6.1:3861518-3861537 | None:intergenic | 25.0% |
!!! | ATAATTCTGAAGTATACGAA+AGG | + | chr6.1:3864043-3864062 | None:intergenic | 25.0% |
!!! | CAGATGTTTGTTTTACTTAA+TGG | - | chr6.1:3863221-3863240 | MS.gene54696:CDS | 25.0% |
!!! | TCTTTTTCGTAATGAAATGA+AGG | - | chr6.1:3861842-3861861 | MS.gene54696:intron | 25.0% |
!!! | TGTTTTGAAAAACTTACTTC+AGG | + | chr6.1:3865054-3865073 | None:intergenic | 25.0% |
!!! | TTTTTTTTTTTGTGGTGTTC+AGG | + | chr6.1:3865273-3865292 | None:intergenic | 25.0% |
AAAGTCTTCTCAATTGGAAA+TGG | - | chr6.1:3861929-3861948 | MS.gene54696:intron | 30.0% | |
AAGTACATAAACTGAATCGT+TGG | - | chr6.1:3863587-3863606 | MS.gene54696:intron | 30.0% | |
AATTGATGCTGATAATAAGG+TGG | - | chr6.1:3863004-3863023 | MS.gene54696:CDS | 30.0% | |
AGAGGAAAGGAGATTAAATA+GGG | + | chr6.1:3861640-3861659 | None:intergenic | 30.0% | |
AGATGATAAAATGCCTAAGT+CGG | - | chr6.1:3862363-3862382 | MS.gene54696:CDS | 30.0% | |
ATAACTAGTACACAAGACAA+TGG | + | chr6.1:3864847-3864866 | None:intergenic | 30.0% | |
ATAAGAAGGATATGCAAAAC+CGG | - | chr6.1:3861799-3861818 | MS.gene54696:intron | 30.0% | |
ATGCGTTCCTAAAATAAGTT+GGG | + | chr6.1:3862076-3862095 | None:intergenic | 30.0% | |
ATTCAAGCTCATAATAACGA+TGG | - | chr6.1:3861323-3861342 | MS.gene54696:intron | 30.0% | |
CTATACAACAACAAATCAGA+TGG | + | chr6.1:3862817-3862836 | None:intergenic | 30.0% | |
GGGTAACTAGTATTTATTTC+AGG | + | chr6.1:3862447-3862466 | None:intergenic | 30.0% | |
GGTTACTATAGAAGATAAGA+AGG | - | chr6.1:3861785-3861804 | MS.gene54696:intron | 30.0% | |
GTATTATCATTGACAGATAC+AGG | + | chr6.1:3860864-3860883 | None:intergenic | 30.0% | |
GTGATGTTAACAGAAATAGA+TGG | + | chr6.1:3864231-3864250 | None:intergenic | 30.0% | |
TAATTCTAGTCATGATGTTG+TGG | - | chr6.1:3860947-3860966 | MS.gene54696:intron | 30.0% | |
TATCAAAGAAACAAGTCACA+AGG | - | chr6.1:3861141-3861160 | MS.gene54696:CDS | 30.0% | |
TGTGTGTTTGTATGTTTGTT+TGG | + | chr6.1:3864781-3864800 | None:intergenic | 30.0% | |
TGTTGTATATGATGCTTGAT+AGG | - | chr6.1:3861764-3861783 | MS.gene54696:intron | 30.0% | |
TTCACTTCCTCAAATTCTAT+CGG | + | chr6.1:3865461-3865480 | None:intergenic | 30.0% | |
TTGATGAAAAGACAGATCTA+GGG | - | chr6.1:3861210-3861229 | MS.gene54696:intron | 30.0% | |
TTTCATCTCAGTCAAGTTAT+TGG | - | chr6.1:3864868-3864887 | MS.gene54696:CDS | 30.0% | |
TTTCTACATAGTTGGTTAAG+AGG | + | chr6.1:3861682-3861701 | None:intergenic | 30.0% | |
TTTGATGAAAAGACAGATCT+AGG | - | chr6.1:3861209-3861228 | MS.gene54696:intron | 30.0% | |
! | AACTCTGAAAAAGATCAATG+GGG | - | chr6.1:3863646-3863665 | MS.gene54696:intron | 30.0% |
! | AAGACATCTTTGGAAGTATA+AGG | + | chr6.1:3864961-3864980 | None:intergenic | 30.0% |
! | AGAACTCTGAAAAAGATCAA+TGG | - | chr6.1:3863644-3863663 | MS.gene54696:intron | 30.0% |
! | ATTGCTATCCTTACCTTTTA+TGG | - | chr6.1:3862387-3862406 | MS.gene54696:CDS | 30.0% |
! | CTGTAGCCTTTATTTAAAGT+AGG | - | chr6.1:3865127-3865146 | MS.gene54696:CDS | 30.0% |
! | GAACTCTGAAAAAGATCAAT+GGG | - | chr6.1:3863645-3863664 | MS.gene54696:intron | 30.0% |
! | GATAAGTTTTGCAATAACAG+TGG | - | chr6.1:3863032-3863051 | MS.gene54696:CDS | 30.0% |
! | GTTGTTCTACCTTTTATGAT+TGG | - | chr6.1:3861506-3861525 | MS.gene54696:intron | 30.0% |
! | TCTTTGAAAATGTTCACTCA+CGG | + | chr6.1:3862185-3862204 | None:intergenic | 30.0% |
! | TCTTTGGAAGTATAAGGATA+AGG | + | chr6.1:3864955-3864974 | None:intergenic | 30.0% |
! | TGAACATTTTCAAAGACATG+AGG | - | chr6.1:3862189-3862208 | MS.gene54696:CDS | 30.0% |
! | TGATGGACATATTAGTATTG+AGG | - | chr6.1:3860974-3860993 | MS.gene54696:intron | 30.0% |
! | TTATAACCCTATCTGAAATC+AGG | + | chr6.1:3864311-3864330 | None:intergenic | 30.0% |
!! | AAGTTTTTCAAAACAGTTCC+TGG | - | chr6.1:3865059-3865078 | MS.gene54696:CDS | 30.0% |
!! | AGTTTTTCAAAACAGTTCCT+GGG | - | chr6.1:3865060-3865079 | MS.gene54696:CDS | 30.0% |
!! | ATCGGTTTTATAATAACACC+TGG | + | chr6.1:3865443-3865462 | None:intergenic | 30.0% |
!! | ATTCACTCACTTTTACGTTA+AGG | - | chr6.1:3864675-3864694 | MS.gene54696:intron | 30.0% |
!! | TGATTTTGAAAAGGATAAGC+AGG | - | chr6.1:3863801-3863820 | MS.gene54696:CDS | 30.0% |
!!! | ATCTCTTTTTTCAACGATGA+AGG | + | chr6.1:3860732-3860751 | None:intergenic | 30.0% |
!!! | TGTATGTTTGTTTGGTTTTG+CGG | + | chr6.1:3864773-3864792 | None:intergenic | 30.0% |
AACCCATAACTGAATTTGAG+GGG | - | chr6.1:3861267-3861286 | MS.gene54696:intron | 35.0% | |
AACTGAATTTGAGGGGAAAA+TGG | - | chr6.1:3861274-3861293 | MS.gene54696:intron | 35.0% | |
ACTCTGATGAAAGACATCTT+TGG | + | chr6.1:3864971-3864990 | None:intergenic | 35.0% | |
AGAAGTCTTCAAAGTTTCCT+AGG | - | chr6.1:3863521-3863540 | MS.gene54696:intron | 35.0% | |
ATGTTCTATTGACACTGGAA+AGG | - | chr6.1:3862565-3862584 | MS.gene54696:intron | 35.0% | |
ATTGGAAAAAACCTTGACTG+TGG | - | chr6.1:3861524-3861543 | MS.gene54696:intron | 35.0% | |
ATTTAAGCCATAGTCTCTGT+GGG | + | chr6.1:3862503-3862522 | None:intergenic | 35.0% | |
CATGCGTTCCTAAAATAAGT+TGG | + | chr6.1:3862077-3862096 | None:intergenic | 35.0% | |
CATTATTCAGAGAAATAGGG+AGG | - | chr6.1:3861172-3861191 | MS.gene54696:CDS | 35.0% | |
CCATTTGTATATCAGTCCAT+TGG | + | chr6.1:3863885-3863904 | None:intergenic | 35.0% | |
CGATTTCATTTACATCGACA+GGG | + | chr6.1:3860773-3860792 | None:intergenic | 35.0% | |
CTCTTAATTGGATACACCTA+CGG | - | chr6.1:3865297-3865316 | MS.gene54696:CDS | 35.0% | |
GAAAGCAAAGTCTTCTCAAT+TGG | - | chr6.1:3861923-3861942 | MS.gene54696:intron | 35.0% | |
GAACATCAACATACATGCAA+TGG | - | chr6.1:3864063-3864082 | MS.gene54696:intron | 35.0% | |
GAACCCATAACTGAATTTGA+GGG | - | chr6.1:3861266-3861285 | MS.gene54696:intron | 35.0% | |
GACACAAACAAAAAAGTCCA+TGG | - | chr6.1:3862104-3862123 | MS.gene54696:intron | 35.0% | |
GAGAGGAAAGGAGATTAAAT+AGG | + | chr6.1:3861641-3861660 | None:intergenic | 35.0% | |
GATGATAAAATGCCTAAGTC+GGG | - | chr6.1:3862364-3862383 | MS.gene54696:CDS | 35.0% | |
GATTTCATTTACATCGACAG+GGG | + | chr6.1:3860772-3860791 | None:intergenic | 35.0% | |
GTCGTAACGTTTATTCTTTC+TGG | + | chr6.1:3860841-3860860 | None:intergenic | 35.0% | |
GTTCTGTCGTAAACCATATT+TGG | + | chr6.1:3862704-3862723 | None:intergenic | 35.0% | |
TAAGAAGGATATGCAAAACC+GGG | - | chr6.1:3861800-3861819 | MS.gene54696:intron | 35.0% | |
TAAGAGCTTTACTACAAAGG+AGG | + | chr6.1:3865174-3865193 | None:intergenic | 35.0% | |
TACAACAACAAATCAGATGG+AGG | + | chr6.1:3862814-3862833 | None:intergenic | 35.0% | |
TATATTCTTGTATGTGCAGG+TGG | - | chr6.1:3865409-3865428 | MS.gene54696:CDS | 35.0% | |
TATTTAAGCCATAGTCTCTG+TGG | + | chr6.1:3862504-3862523 | None:intergenic | 35.0% | |
TCAAAGAACATGAAAATGCC+CGG | - | chr6.1:3863905-3863924 | MS.gene54696:CDS | 35.0% | |
TCACTTCAAGTACTAGGTTT+AGG | - | chr6.1:3864014-3864033 | MS.gene54696:CDS | 35.0% | |
TCCAAACCTGATTTCAGATA+GGG | - | chr6.1:3864302-3864321 | MS.gene54696:CDS | 35.0% | |
TCGATTTCATTTACATCGAC+AGG | + | chr6.1:3860774-3860793 | None:intergenic | 35.0% | |
TCTGAGAAGTCCAAGAAAAA+AGG | + | chr6.1:3863205-3863224 | None:intergenic | 35.0% | |
TCTTAATTGGATACACCTAC+GGG | - | chr6.1:3865298-3865317 | MS.gene54696:CDS | 35.0% | |
TGAACCCATAACTGAATTTG+AGG | - | chr6.1:3861265-3861284 | MS.gene54696:intron | 35.0% | |
TGAGATGGAAGTTCATAAGA+TGG | + | chr6.1:3863736-3863755 | None:intergenic | 35.0% | |
TGATGATAGCACTTATGAAG+AGG | - | chr6.1:3862252-3862271 | MS.gene54696:CDS | 35.0% | |
TGGTTTACGACAGAACATTA+TGG | - | chr6.1:3862708-3862727 | MS.gene54696:intron | 35.0% | |
TGTGTCTCAAAATCTAACGT+TGG | + | chr6.1:3864277-3864296 | None:intergenic | 35.0% | |
TGTTCTATTGACACTGGAAA+GGG | - | chr6.1:3862566-3862585 | MS.gene54696:intron | 35.0% | |
TTATGAACTTCCATCTCAAG+AGG | - | chr6.1:3863738-3863757 | MS.gene54696:intron | 35.0% | |
TTCCAAACCTGATTTCAGAT+AGG | - | chr6.1:3864301-3864320 | MS.gene54696:CDS | 35.0% | |
TTCCCCTCAAATTCAGTTAT+GGG | + | chr6.1:3861272-3861291 | None:intergenic | 35.0% | |
TTTCCCCTCAAATTCAGTTA+TGG | + | chr6.1:3861273-3861292 | None:intergenic | 35.0% | |
! | AAGTTTTGCAATAACAGTGG+TGG | - | chr6.1:3863035-3863054 | MS.gene54696:CDS | 35.0% |
! | ATAAGTTGGGAAGTGAGAAA+AGG | + | chr6.1:3862063-3862082 | None:intergenic | 35.0% |
! | CTCCCTATTTCTCTGAATAA+TGG | + | chr6.1:3861174-3861193 | None:intergenic | 35.0% |
! | CTGTATTTTCGCAAAGTAGT+TGG | + | chr6.1:3865351-3865370 | None:intergenic | 35.0% |
! | GGAGTCAAAATTGATTCTAG+AGG | - | chr6.1:3864523-3864542 | MS.gene54696:intron | 35.0% |
! | TACCTTTTTCCATGTATCTG+AGG | + | chr6.1:3863350-3863369 | None:intergenic | 35.0% |
!! | CCAATGGACTGATATACAAA+TGG | - | chr6.1:3863882-3863901 | MS.gene54696:CDS | 35.0% |
!! | CTCACTTCCCAACTTATTTT+AGG | - | chr6.1:3862066-3862085 | MS.gene54696:intron | 35.0% |
!! | GATCTAGGGTTTTCAACTAT+AGG | - | chr6.1:3861224-3861243 | MS.gene54696:intron | 35.0% |
!! | GGTGTTAGTCTTCTTGATAT+TGG | - | chr6.1:3861344-3861363 | MS.gene54696:intron | 35.0% |
!! | GTATTGTCGACCTTTGATTT+TGG | + | chr6.1:3864408-3864427 | None:intergenic | 35.0% |
!! | TACTGATAATGATAATGGGC+AGG | - | chr6.1:3863465-3863484 | MS.gene54696:intron | 35.0% |
!! | TTTGTTGTTGTATAGATGCG+TGG | - | chr6.1:3862822-3862841 | MS.gene54696:CDS | 35.0% |
!!! | AATTTTGACTCCTCCAAAAG+TGG | + | chr6.1:3864515-3864534 | None:intergenic | 35.0% |
AAAGGATAAACAGTTTGCCC+AGG | + | chr6.1:3865080-3865099 | None:intergenic | 40.0% | |
AACCGAAGTCTTGAATGTTC+AGG | + | chr6.1:3861026-3861045 | None:intergenic | 40.0% | |
AAGTGGCAACATTGAGAATG+AGG | - | chr6.1:3863082-3863101 | MS.gene54696:CDS | 40.0% | |
ACCTTTACATTGTGCCTAAC+AGG | + | chr6.1:3863547-3863566 | None:intergenic | 40.0% | |
ACTAGTACACAAGACAATGG+TGG | + | chr6.1:3864844-3864863 | None:intergenic | 40.0% | |
AGAAGACTTCCGACAATCAA+CGG | - | chr6.1:3860685-3860704 | MS.gene54696:CDS | 40.0% | |
AGAAGCTCTCAAGAAGAGAA+AGG | - | chr6.1:3863939-3863958 | MS.gene54696:CDS | 40.0% | |
AGATATACACACACCATCAG+AGG | + | chr6.1:3862472-3862491 | None:intergenic | 40.0% | |
AGTGGCAACATTGAGAATGA+GGG | - | chr6.1:3863083-3863102 | MS.gene54696:CDS | 40.0% | |
ATACCAAAACGACAACTGCA+TGG | - | chr6.1:3860880-3860899 | MS.gene54696:intron | 40.0% | |
ATGAAAATGCCCGGAGAAAA+AGG | - | chr6.1:3863914-3863933 | MS.gene54696:CDS | 40.0% | |
ATTCTTTCTGGACTCTTCCT+CGG | + | chr6.1:3860829-3860848 | None:intergenic | 40.0% | |
CAAAGAAACAAGTCACAAGG+TGG | - | chr6.1:3861144-3861163 | MS.gene54696:CDS | 40.0% | |
CAGATCATGCAAAGGTAGAA+AGG | - | chr6.1:3861102-3861121 | MS.gene54696:CDS | 40.0% | |
CATGAAACAAGAATGCCAGA+GGG | - | chr6.1:3861977-3861996 | MS.gene54696:intron | 40.0% | |
CCATATTTGCCTCAGATACA+TGG | - | chr6.1:3863338-3863357 | MS.gene54696:intron | 40.0% | |
CGAGAAACTCCTAACAAGAA+CGG | - | chr6.1:3864927-3864946 | MS.gene54696:CDS | 40.0% | |
CGTTCTTGTTAGGAGTTTCT+CGG | + | chr6.1:3864929-3864948 | None:intergenic | 40.0% | |
CTCCTGAACATTCAAGACTT+CGG | - | chr6.1:3861021-3861040 | MS.gene54696:intron | 40.0% | |
CTTATCCAGATCAGAATCAG+CGG | + | chr6.1:3862290-3862309 | None:intergenic | 40.0% | |
CTTCGTATTCTTGTACAGCA+AGG | + | chr6.1:3862887-3862906 | None:intergenic | 40.0% | |
GAAAAGCCTCTATTACTTCC+TGG | - | chr6.1:3863853-3863872 | MS.gene54696:CDS | 40.0% | |
GATAGCGATACAGATGATGA+AGG | - | chr6.1:3863673-3863692 | MS.gene54696:intron | 40.0% | |
GCATATTCATTAGCAGCTTC+AGG | + | chr6.1:3861957-3861976 | None:intergenic | 40.0% | |
GGAAAGGAGATTAAATAGGG+AGG | + | chr6.1:3861637-3861656 | None:intergenic | 40.0% | |
GGTCGACAATACTTTAGTGT+TGG | - | chr6.1:3864416-3864435 | MS.gene54696:intron | 40.0% | |
TACAGATGATGAAGGACTGA+TGG | - | chr6.1:3863681-3863700 | MS.gene54696:intron | 40.0% | |
TCAGACTCTGGATATAGAGT+CGG | + | chr6.1:3860921-3860940 | None:intergenic | 40.0% | |
TCATGCAAAGGTAGAAAGGA+AGG | - | chr6.1:3861106-3861125 | MS.gene54696:CDS | 40.0% | |
TCCATAAATGCTAAACGCAG+AGG | + | chr6.1:3861419-3861438 | None:intergenic | 40.0% | |
TCCTCTGCGTTTAGCATTTA+TGG | - | chr6.1:3861415-3861434 | MS.gene54696:intron | 40.0% | |
TCTAGTCATGATGTTGTGGA+AGG | - | chr6.1:3860951-3860970 | MS.gene54696:intron | 40.0% | |
TCTCAGTCAAGTTATTGGAC+TGG | - | chr6.1:3864873-3864892 | MS.gene54696:CDS | 40.0% | |
TGAAAAAGATCAATGGGGAG+AGG | - | chr6.1:3863651-3863670 | MS.gene54696:intron | 40.0% | |
TGAAAATGCCCGGAGAAAAA+GGG | - | chr6.1:3863915-3863934 | MS.gene54696:CDS | 40.0% | |
TGCCTCAGATACATGGAAAA+AGG | - | chr6.1:3863345-3863364 | MS.gene54696:intron | 40.0% | |
TGTTGTATAGATGCGTGGAT+TGG | - | chr6.1:3862827-3862846 | MS.gene54696:CDS | 40.0% | |
TTGAGTAAGAGGTCCAAATG+AGG | + | chr6.1:3865031-3865050 | None:intergenic | 40.0% | |
TTTGATATCTTCCATACGCG+TGG | - | chr6.1:3863424-3863443 | MS.gene54696:intron | 40.0% | |
! | ACCCTATCTGAAATCAGGTT+TGG | + | chr6.1:3864306-3864325 | None:intergenic | 40.0% |
! | CCATGTATCTGAGGCAAATA+TGG | + | chr6.1:3863341-3863360 | None:intergenic | 40.0% |
! | CTCTGAGAAATCAAGCAAGA+AGG | - | chr6.1:3863987-3864006 | MS.gene54696:CDS | 40.0% |
! | GCACAGGATTTTCTTCATTG+AGG | + | chr6.1:3863831-3863850 | None:intergenic | 40.0% |
! | GGAAGTAATAGAGGCTTTTC+TGG | + | chr6.1:3863853-3863872 | None:intergenic | 40.0% |
! | GGTTAGTCACTTCAAGTACT+AGG | - | chr6.1:3864008-3864027 | MS.gene54696:CDS | 40.0% |
! | GTAGTTGGTTCACTTGATAC+AGG | + | chr6.1:3865336-3865355 | None:intergenic | 40.0% |
! | TCATTCGACAAGCTTTTGCT+GGG | - | chr6.1:3863764-3863783 | MS.gene54696:CDS | 40.0% |
! | TGTATGTTCGGTTCCACTTT+TGG | - | chr6.1:3864499-3864518 | MS.gene54696:intron | 40.0% |
!! | CTTACTTCAGGTTGAGTAAG+AGG | + | chr6.1:3865042-3865061 | None:intergenic | 40.0% |
!! | GAGCGTCTTGAAGAGTATTA+AGG | + | chr6.1:3861004-3861023 | None:intergenic | 40.0% |
!! | GGTTTTCTTCCGTTGATTGT+CGG | + | chr6.1:3860697-3860716 | None:intergenic | 40.0% |
!! | TAGTGTTGGTGTATGCCATT+TGG | - | chr6.1:3864430-3864449 | MS.gene54696:intron | 40.0% |
!! | TGGCAGAAGAGTATTTGGAA+TGG | - | chr6.1:3862968-3862987 | MS.gene54696:CDS | 40.0% |
!!! | CTCAATGTTGCCACTTTTCT+TGG | + | chr6.1:3863078-3863097 | None:intergenic | 40.0% |
AAATACTCTTCTGCCACTGG+TGG | + | chr6.1:3862964-3862983 | None:intergenic | 45.0% | |
AAGGATAGCAATCCCGACTT+AGG | + | chr6.1:3862379-3862398 | None:intergenic | 45.0% | |
ACCTTTGCATGATCTGCCTT+TGG | + | chr6.1:3861098-3861117 | None:intergenic | 45.0% | |
ACTAGTTACCCAACCTCTGA+TGG | - | chr6.1:3862456-3862475 | MS.gene54696:CDS | 45.0% | |
AGAATCCTCCAGCTTCTTCA+TGG | + | chr6.1:3862913-3862932 | None:intergenic | 45.0% | |
AGATGATGAAGGACTGATGG+TGG | - | chr6.1:3863684-3863703 | MS.gene54696:intron | 45.0% | |
AGATTCCATGAAGAAGCTGG+AGG | - | chr6.1:3862905-3862924 | MS.gene54696:intron | 45.0% | |
AGCCTCTATTACTTCCTGGT+TGG | - | chr6.1:3863857-3863876 | MS.gene54696:CDS | 45.0% | |
ATACACACACCATCAGAGGT+TGG | + | chr6.1:3862468-3862487 | None:intergenic | 45.0% | |
ATACGAAGAAGAACTACCCG+AGG | - | chr6.1:3860809-3860828 | MS.gene54696:intron | 45.0% | |
ATCACTGCTGTTACTGTCCA+TGG | + | chr6.1:3862236-3862255 | None:intergenic | 45.0% | |
ATGAAGAAGCTGGAGGATTC+TGG | - | chr6.1:3862912-3862931 | MS.gene54696:intron | 45.0% | |
ATTCAGTTCCTCCAGCCAAA+TGG | + | chr6.1:3864448-3864467 | None:intergenic | 45.0% | |
CAAAGTTTCCTAGGCCTGTT+AGG | - | chr6.1:3863530-3863549 | MS.gene54696:intron | 45.0% | |
CATGATGTTGTGGAAGGTGA+TGG | - | chr6.1:3860957-3860976 | MS.gene54696:intron | 45.0% | |
CATTGGACCTGAATCTAACC+CGG | - | chr6.1:3865002-3865021 | MS.gene54696:CDS | 45.0% | |
CATTTACATCGACAGGGGTA+GGG | + | chr6.1:3860767-3860786 | None:intergenic | 45.0% | |
CCATGAAACAAGAATGCCAG+AGG | - | chr6.1:3861976-3861995 | MS.gene54696:intron | 45.0% | |
CCTCTATTACTTCCTGGTTG+GGG | - | chr6.1:3863859-3863878 | MS.gene54696:CDS | 45.0% | |
CGAAGATTCCATGAAGAAGC+TGG | - | chr6.1:3862902-3862921 | MS.gene54696:intron | 45.0% | |
CTTCAGCGTAAAATGCAACG+TGG | - | chr6.1:3862127-3862146 | MS.gene54696:intron | 45.0% | |
CTTGATATTGGACGACGACA+AGG | - | chr6.1:3861356-3861375 | MS.gene54696:intron | 45.0% | |
GACGACAAGGTACAAATGCT+TGG | - | chr6.1:3861369-3861388 | MS.gene54696:intron | 45.0% | |
GCAACGTGGTTTAGATAAGC+AGG | - | chr6.1:3862141-3862160 | MS.gene54696:CDS | 45.0% | |
GCCTCTATTACTTCCTGGTT+GGG | - | chr6.1:3863858-3863877 | MS.gene54696:CDS | 45.0% | |
GCCTGTTAGGCACAATGTAA+AGG | - | chr6.1:3863543-3863562 | MS.gene54696:intron | 45.0% | |
GGAAAAAACCTTGACTGTGG+AGG | - | chr6.1:3861527-3861546 | MS.gene54696:intron | 45.0% | |
GGGTTAGATTCAGGTCCAAT+GGG | + | chr6.1:3865003-3865022 | None:intergenic | 45.0% | |
GGTTTAGATAAGCAGGACGT+AGG | - | chr6.1:3862148-3862167 | MS.gene54696:CDS | 45.0% | |
TACACACACCATCAGAGGTT+GGG | + | chr6.1:3862467-3862486 | None:intergenic | 45.0% | |
TCAAAAGTAGCATCCACCAG+TGG | - | chr6.1:3862948-3862967 | MS.gene54696:intron | 45.0% | |
TCATAGTTCCTCCACAGTCA+AGG | + | chr6.1:3861538-3861557 | None:intergenic | 45.0% | |
TCATTTACATCGACAGGGGT+AGG | + | chr6.1:3860768-3860787 | None:intergenic | 45.0% | |
TCCAAAGGCAGATCATGCAA+AGG | - | chr6.1:3861094-3861113 | MS.gene54696:CDS | 45.0% | |
TCCAAATACTCTTCTGCCAC+TGG | + | chr6.1:3862967-3862986 | None:intergenic | 45.0% | |
TCTAATGCCCACAGAGACTA+TGG | - | chr6.1:3862493-3862512 | MS.gene54696:intron | 45.0% | |
TGACTGTGGAGGAACTATGA+TGG | - | chr6.1:3861538-3861557 | MS.gene54696:intron | 45.0% | |
TGCAAAGGTAGAAAGGAAGG+TGG | - | chr6.1:3861109-3861128 | MS.gene54696:CDS | 45.0% | |
TGTTCATGCACCACTTCCAA+AGG | - | chr6.1:3861079-3861098 | MS.gene54696:intron | 45.0% | |
TTCAACGATGAAGGCAATCG+AGG | + | chr6.1:3860723-3860742 | None:intergenic | 45.0% | |
TTCTTTCTGGACTCTTCCTC+GGG | + | chr6.1:3860828-3860847 | None:intergenic | 45.0% | |
TTGAGGAAGTGAACCCTCAA+GGG | - | chr6.1:3865468-3865487 | MS.gene54696:CDS | 45.0% | |
TTTGAGGAAGTGAACCCTCA+AGG | - | chr6.1:3865467-3865486 | MS.gene54696:CDS | 45.0% | |
! | AAGCCTTATCCCACTAAGTG+GGG | + | chr6.1:3862757-3862776 | None:intergenic | 45.0% |
! | ACAAAAGACGCAAGAAGTGC+TGG | - | chr6.1:3862336-3862355 | MS.gene54696:CDS | 45.0% |
! | AGCTTCTTCCCTTTTTCTCC+GGG | + | chr6.1:3863926-3863945 | None:intergenic | 45.0% |
! | CAAGCCTTATCCCACTAAGT+GGG | + | chr6.1:3862758-3862777 | None:intergenic | 45.0% |
! | CATTCGACAAGCTTTTGCTG+GGG | - | chr6.1:3863765-3863784 | MS.gene54696:CDS | 45.0% |
! | CCTCTGGCATTCTTGTTTCA+TGG | + | chr6.1:3861979-3861998 | None:intergenic | 45.0% |
! | CTCATTCGACAAGCTTTTGC+TGG | - | chr6.1:3863763-3863782 | MS.gene54696:CDS | 45.0% |
! | GAGCTTCTTCCCTTTTTCTC+CGG | + | chr6.1:3863927-3863946 | None:intergenic | 45.0% |
! | TGAGCTTAGCTCAGTTGGTA+GGG | - | chr6.1:3865211-3865230 | MS.gene54696:CDS | 45.0% |
! | TGCATTTTACGCTGAAGCCA+TGG | + | chr6.1:3862124-3862143 | None:intergenic | 45.0% |
! | TTGGATACACCTACGGGTTT+TGG | - | chr6.1:3865304-3865323 | MS.gene54696:CDS | 45.0% |
!! | AATAGAGGCTTTTCTGGCAC+AGG | + | chr6.1:3863847-3863866 | None:intergenic | 45.0% |
!! | ACCAGTGGCAGAAGAGTATT+TGG | - | chr6.1:3862963-3862982 | MS.gene54696:CDS | 45.0% |
!! | ATGTTCGGTTCCACTTTTGG+AGG | - | chr6.1:3864502-3864521 | MS.gene54696:intron | 45.0% |
!! | CGCTGATTCTGATCTGGATA+AGG | - | chr6.1:3862288-3862307 | MS.gene54696:CDS | 45.0% |
!! | CTTCCATGCAGTTGTCGTTT+TGG | + | chr6.1:3860886-3860905 | None:intergenic | 45.0% |
!! | GAATACCGCTGATTCTGATC+TGG | - | chr6.1:3862282-3862301 | MS.gene54696:CDS | 45.0% |
!! | GACTTTGAGGCCAAGAAAAG+TGG | - | chr6.1:3863065-3863084 | MS.gene54696:CDS | 45.0% |
!! | GATAAGGCACCGTTCTTGTT+AGG | + | chr6.1:3864939-3864958 | None:intergenic | 45.0% |
!!! | ACTTCTTTTTTCCGCTGTGC+CGG | + | chr6.1:3860662-3860681 | None:intergenic | 45.0% |
!!! | ATACACCTACGGGTTTTGGA+GGG | - | chr6.1:3865308-3865327 | MS.gene54696:CDS | 45.0% |
!! | TCAAAAAAAAAAATTATAAA+AGG | + | chr6.1:3863409-3863428 | None:intergenic | 5.0% |
AAGAAGCTGGAGGATTCTGG+TGG | - | chr6.1:3862915-3862934 | MS.gene54696:intron | 50.0% | |
ACACACACACACACACTTGG+TGG | - | chr6.1:3864800-3864819 | MS.gene54696:intron | 50.0% | |
ACATATATACCTCCGCCCTC+TGG | + | chr6.1:3861995-3862014 | None:intergenic | 50.0% | |
ACATTGTGCCTAACAGGCCT+AGG | + | chr6.1:3863541-3863560 | None:intergenic | 50.0% | |
ACTCGTGAGCTTAGCTCAGT+TGG | - | chr6.1:3865206-3865225 | MS.gene54696:CDS | 50.0% | |
CACACACACACACACACACT+TGG | - | chr6.1:3864797-3864816 | MS.gene54696:intron | 50.0% | |
CAGAGTATGCGTATGCCCAT+TGG | - | chr6.1:3864985-3865004 | MS.gene54696:CDS | 50.0% | |
CCAACAAAATGCCACGCGTA+TGG | + | chr6.1:3863438-3863457 | None:intergenic | 50.0% | |
CCACTTAGTGGGATAAGGCT+TGG | - | chr6.1:3862756-3862775 | MS.gene54696:intron | 50.0% | |
CCCCAACCAGGAAGTAATAG+AGG | + | chr6.1:3863862-3863881 | None:intergenic | 50.0% | |
CGAATGAGCTCCTCTTGAGA+TGG | + | chr6.1:3863751-3863770 | None:intergenic | 50.0% | |
CTTATCCCACTAAGTGGGGT+CGG | + | chr6.1:3862753-3862772 | None:intergenic | 50.0% | |
GAAACAAGAATGCCAGAGGG+CGG | - | chr6.1:3861980-3861999 | MS.gene54696:intron | 50.0% | |
GAGAAGAAGCGAAAGGAGAG+AGG | - | chr6.1:3860624-3860643 | MS.gene54696:CDS | 50.0% | |
GGGAAGTGATCATCTGCAGA+AGG | - | chr6.1:3863103-3863122 | MS.gene54696:CDS | 50.0% | |
GTGAGCTTAGCTCAGTTGGT+AGG | - | chr6.1:3865210-3865229 | MS.gene54696:CDS | 50.0% | |
! | AAGTGAACCCTCAAGGGCAT+CGG | - | chr6.1:3865474-3865493 | MS.gene54696:CDS | 50.0% |
! | CCAAGCCTTATCCCACTAAG+TGG | + | chr6.1:3862759-3862778 | None:intergenic | 50.0% |
! | CCATACGCGTGGCATTTTGT+TGG | - | chr6.1:3863435-3863454 | MS.gene54696:intron | 50.0% |
! | CGGGTTAGATTCAGGTCCAA+TGG | + | chr6.1:3865004-3865023 | None:intergenic | 50.0% |
! | GCATGATCTGCCTTTGGAAG+TGG | + | chr6.1:3861092-3861111 | None:intergenic | 50.0% |
! | GTTGGTGTATGCCATTTGGC+TGG | - | chr6.1:3864434-3864453 | MS.gene54696:intron | 50.0% |
! | TTGCAATAACAGTGGTGGCG+AGG | - | chr6.1:3863040-3863059 | MS.gene54696:CDS | 50.0% |
!! | AAAGACGCAAGAAGTGCTGG+AGG | - | chr6.1:3862339-3862358 | MS.gene54696:CDS | 50.0% |
!! | GATACACCTACGGGTTTTGG+AGG | - | chr6.1:3865307-3865326 | MS.gene54696:CDS | 50.0% |
!! | GATGAAGGACTGATGGTGGA+TGG | - | chr6.1:3863688-3863707 | MS.gene54696:intron | 50.0% |
AGAGGTCCAAATGAGGTCGC+CGG | + | chr6.1:3865024-3865043 | None:intergenic | 55.0% | |
AGGAACCCTCCAAAACCCGT+AGG | + | chr6.1:3865316-3865335 | None:intergenic | 55.0% | |
ATGTAGCCGACCCCACTTAG+TGG | - | chr6.1:3862744-3862763 | MS.gene54696:intron | 55.0% | |
CGACCCCACTTAGTGGGATA+AGG | - | chr6.1:3862751-3862770 | MS.gene54696:intron | 55.0% | |
CGATGAAGGCAATCGAGGAC+AGG | + | chr6.1:3860718-3860737 | None:intergenic | 55.0% | |
GGCTCTGCAATTTAGCAGCC+CGG | + | chr6.1:3861821-3861840 | None:intergenic | 55.0% | |
GTGCAGGTGGTGAAGAAACC+AGG | - | chr6.1:3865422-3865441 | MS.gene54696:CDS | 55.0% | |
TAACGCTCCGATGCCCTTGA+GGG | + | chr6.1:3865484-3865503 | None:intergenic | 55.0% | |
TACTTCCTGGTTGGGGCCAA+TGG | - | chr6.1:3863866-3863885 | MS.gene54696:CDS | 55.0% | |
TCTAACCCGGCGACCTCATT+TGG | - | chr6.1:3865015-3865034 | MS.gene54696:CDS | 55.0% | |
TGTAGCCGACCCCACTTAGT+GGG | - | chr6.1:3862745-3862764 | MS.gene54696:intron | 55.0% | |
TTAACGCTCCGATGCCCTTG+AGG | + | chr6.1:3865485-3865504 | None:intergenic | 55.0% | |
! | GGTGTATGCCATTTGGCTGG+AGG | - | chr6.1:3864437-3864456 | MS.gene54696:intron | 55.0% |
! | TGGTGGCGAGGATGACTTTG+AGG | - | chr6.1:3863052-3863071 | MS.gene54696:CDS | 55.0% |
!!! | TTTTCCGCTGTGCCGGTTGT+TGG | + | chr6.1:3860655-3860674 | None:intergenic | 55.0% |
ACAAGAATGCCAGAGGGCGG+AGG | - | chr6.1:3861983-3862002 | MS.gene54696:intron | 60.0% | |
AGAGAGGCGACGCCAACAAC+CGG | - | chr6.1:3860640-3860659 | MS.gene54696:CDS | 60.0% | |
GAGGTCCAAATGAGGTCGCC+GGG | + | chr6.1:3865023-3865042 | None:intergenic | 60.0% | |
TCAGTCCATTGGCCCCAACC+AGG | + | chr6.1:3863874-3863893 | None:intergenic | 60.0% | |
! | GAGGTCGCCGGGTTAGATTC+AGG | + | chr6.1:3865012-3865031 | None:intergenic | 60.0% |
GACGCCAACAACCGGCACAG+CGG | - | chr6.1:3860648-3860667 | MS.gene54696:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 3860618 | 3865529 | 3860618 | ID=MS.gene54696 |
chr6.1 | mRNA | 3860618 | 3865529 | 3860618 | ID=MS.gene54696.t1;Parent=MS.gene54696 |
chr6.1 | exon | 3864801 | 3865529 | 3864801 | ID=MS.gene54696.t1.exon1;Parent=MS.gene54696.t1 |
chr6.1 | CDS | 3864801 | 3865529 | 3864801 | ID=cds.MS.gene54696.t1;Parent=MS.gene54696.t1 |
chr6.1 | exon | 3864143 | 3864361 | 3864143 | ID=MS.gene54696.t1.exon2;Parent=MS.gene54696.t1 |
chr6.1 | CDS | 3864143 | 3864361 | 3864143 | ID=cds.MS.gene54696.t1;Parent=MS.gene54696.t1 |
chr6.1 | exon | 3863739 | 3864059 | 3863739 | ID=MS.gene54696.t1.exon3;Parent=MS.gene54696.t1 |
chr6.1 | CDS | 3863739 | 3864059 | 3863739 | ID=cds.MS.gene54696.t1;Parent=MS.gene54696.t1 |
chr6.1 | exon | 3862957 | 3863310 | 3862957 | ID=MS.gene54696.t1.exon4;Parent=MS.gene54696.t1 |
chr6.1 | CDS | 3862957 | 3863310 | 3862957 | ID=cds.MS.gene54696.t1;Parent=MS.gene54696.t1 |
chr6.1 | exon | 3862781 | 3862861 | 3862781 | ID=MS.gene54696.t1.exon5;Parent=MS.gene54696.t1 |
chr6.1 | CDS | 3862781 | 3862861 | 3862781 | ID=cds.MS.gene54696.t1;Parent=MS.gene54696.t1 |
chr6.1 | exon | 3862583 | 3862660 | 3862583 | ID=MS.gene54696.t1.exon6;Parent=MS.gene54696.t1 |
chr6.1 | CDS | 3862583 | 3862660 | 3862583 | ID=cds.MS.gene54696.t1;Parent=MS.gene54696.t1 |
chr6.1 | exon | 3862139 | 3862501 | 3862139 | ID=MS.gene54696.t1.exon7;Parent=MS.gene54696.t1 |
chr6.1 | CDS | 3862139 | 3862501 | 3862139 | ID=cds.MS.gene54696.t1;Parent=MS.gene54696.t1 |
chr6.1 | exon | 3861091 | 3861222 | 3861091 | ID=MS.gene54696.t1.exon8;Parent=MS.gene54696.t1 |
chr6.1 | CDS | 3861091 | 3861222 | 3861091 | ID=cds.MS.gene54696.t1;Parent=MS.gene54696.t1 |
chr6.1 | exon | 3860618 | 3860719 | 3860618 | ID=MS.gene54696.t1.exon9;Parent=MS.gene54696.t1 |
chr6.1 | CDS | 3860618 | 3860719 | 3860618 | ID=cds.MS.gene54696.t1;Parent=MS.gene54696.t1 |
Gene Sequence |
Protein sequence |