AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36329

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36329.t1 MTR_2g101620 96.577 555 19 0 1 555 1 555 0.0 1112
MS.gene36329.t1 MTR_2g009800 90.450 555 53 0 1 555 1 555 0.0 1043
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36329.t1 AT5G14050 62.014 566 184 10 1 555 1 546 0.0 668

Find 128 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGAAAATGCTTTGAATTT+TGG 0.078071 2.2:+2030283 None:intergenic
CTCTACTCCCCTCTTGAATT+TGG 0.174548 2.2:-2030941 MS.gene36329:CDS
CTTAACGTCATCCTCTCTTT+TGG 0.244745 2.2:+2031105 None:intergenic
ATGGAACTGAACCGAATTAA+TGG 0.250496 2.2:+2030382 None:intergenic
TGAAATCCACTTCAGTATTC+AGG 0.253259 2.2:+2029733 None:intergenic
TAGCCAAAGTTAACAGATTA+AGG 0.262384 2.2:-2030721 MS.gene36329:CDS
GACTGGGCACAGCTTGATTC+AGG 0.267674 2.2:-2030605 MS.gene36329:CDS
AAGGCTAGAGTTGATAAAAT+TGG 0.310494 2.2:-2030164 MS.gene36329:CDS
CCGAGAAGTCAGAATCTTCT+TGG 0.315985 2.2:+2030822 None:intergenic
TTAACAGATTAAGGAAGTTA+AGG 0.316539 2.2:-2030712 MS.gene36329:CDS
TCCCCTCTTGAATTTGGAAA+TGG 0.323398 2.2:-2030935 MS.gene36329:CDS
CCAAGAAGATTCTGACTTCT+CGG 0.345962 2.2:-2030822 MS.gene36329:CDS
CTTTGCGAAGAAAGCCGGTT+TGG 0.353761 2.2:-2030778 MS.gene36329:CDS
TTCTAATGGTCCCATTAATT+CGG 0.354772 2.2:-2030393 MS.gene36329:CDS
AGGTTATCAATGGTCTTGAT+AGG 0.358287 2.2:+2029753 None:intergenic
AGATGGAAAGGAAGAAGATT+TGG 0.363709 2.2:-2031017 MS.gene36329:CDS
GGTCAGCTGCTTCTTGCTGC+TGG 0.365476 2.2:-2030353 MS.gene36329:CDS
ACTTGTAGATGCAAACATTC+AGG 0.369324 2.2:-2030420 MS.gene36329:CDS
TTTGAAAGAATCTAAGATTC+CGG 0.381602 2.2:+2030324 None:intergenic
GGGTCTCAAGTGATAATATC+TGG 0.385058 2.2:-2030221 MS.gene36329:CDS
TTCGAATGGGGCAATCTTCA+AGG 0.387189 2.2:+2030264 None:intergenic
CCCCTCTTGAATTTGGAAAT+GGG 0.395309 2.2:-2030934 MS.gene36329:CDS
TGGACTAAAATCAATACAAC+GGG 0.404884 2.2:+2029578 None:intergenic
CTTCCTTAATCTGTTAACTT+TGG 0.410710 2.2:+2030718 None:intergenic
TTTGCGAAGAAAGCCGGTTT+GGG 0.414670 2.2:-2030777 MS.gene36329:CDS
GGAAATGGGGATGACGATGA+AGG 0.417176 2.2:-2030920 MS.gene36329:CDS
GAGGACGAGAATGTGATATC+TGG 0.419714 2.2:-2030683 MS.gene36329:CDS
TTATAGTCTTGATTTAGTTA+AGG 0.420893 2.2:-2030183 MS.gene36329:CDS
ACAAAATCAAAGCAATTAGT+TGG 0.426886 2.2:-2030035 MS.gene36329:CDS
ATGGCCGTAGGAAACGCTTC+AGG 0.428219 2.2:-2029543 MS.gene36329:CDS
TGGAACTGAACCGAATTAAT+GGG 0.436701 2.2:+2030383 None:intergenic
CAAAAGAGAGGATGACGTTA+AGG 0.440643 2.2:-2031104 MS.gene36329:CDS
GAATTAATGGGACCATTAGA+AGG 0.443632 2.2:+2030395 None:intergenic
TCGGTTCAGTTCCATCGAAA+TGG 0.445521 2.2:-2030374 MS.gene36329:CDS
TTCAGTATTCAGGTTATCAA+TGG 0.445525 2.2:+2029743 None:intergenic
AAGTAATGTTGTTGCGAGCC+GGG 0.448192 2.2:-2030537 MS.gene36329:CDS
AACATTCAGGATCCTTCTAA+TGG 0.448781 2.2:-2030407 MS.gene36329:CDS
TTCTAAAATGATAGCCTTTG+TGG 0.449352 2.2:-2030087 MS.gene36329:CDS
TCTTCCTCATCCACCCAAAC+CGG 0.450796 2.2:+2030764 None:intergenic
GAAATGGGGATGACGATGAA+GGG 0.451632 2.2:-2030919 MS.gene36329:CDS
TTTGCAGCTGGTTCGGCTAG+TGG 0.463183 2.2:-2029825 MS.gene36329:CDS
AAATATTAGCAATCTGTTCA+AGG 0.463908 2.2:-2029689 MS.gene36329:CDS
CTTAGATTCTTTCAAATCGA+TGG 0.465769 2.2:-2030317 MS.gene36329:CDS
GTAGATGAAGGCTGTTTAAA+CGG 0.466326 2.2:-2029882 MS.gene36329:CDS
GCTGCAAAATGTGTCCCTAC+TGG 0.467974 2.2:+2029840 None:intergenic
CAGATTAAGGAAGTTAAGGA+AGG 0.470846 2.2:-2030708 MS.gene36329:CDS
TACAATAGTGAGGAATTTCT+CGG 0.472639 2.2:-2029789 MS.gene36329:CDS
CAGAGTATGCGTCAAGATTG+AGG 0.476828 2.2:-2030658 MS.gene36329:CDS
ACTGACCGTTCTGCTGATAG+TGG 0.477341 2.2:-2030857 MS.gene36329:CDS
TGTTGCGAGCCGGGGTTATG+AGG 0.478638 2.2:-2030528 MS.gene36329:CDS
AAGCATCTTTCTTGCCCGAT+GGG 0.479466 2.2:-2030241 MS.gene36329:CDS
GATGATGAATTGACAGATGA+TGG 0.480610 2.2:-2030560 MS.gene36329:CDS
AGCTCAACCGAGGAACTGAC+TGG 0.481203 2.2:-2030622 MS.gene36329:CDS
GAAGTAATGTTGTTGCGAGC+CGG 0.483388 2.2:-2030538 MS.gene36329:CDS
GTGATGGCCATGTTTACCAT+TGG 0.483908 2.2:-2029938 MS.gene36329:CDS
AAATTGGTCCGCTGTTGGAT+AGG 0.484483 2.2:-2030148 MS.gene36329:CDS
AATTGGTCCGCTGTTGGATA+GGG 0.491909 2.2:-2030147 MS.gene36329:CDS
ACAATAGTGAGGAATTTCTC+GGG 0.494442 2.2:-2029788 MS.gene36329:CDS
ACGGTCAGTGAAGAACAAAT+TGG 0.494840 2.2:+2030871 None:intergenic
TGATGGCCATGTTTACCATT+GGG 0.497623 2.2:-2029937 MS.gene36329:CDS
TCTTTCAAATCGATGGCAAA+CGG 0.500797 2.2:-2030310 MS.gene36329:CDS
AAGGAAGTTAAGGAAGGAAG+AGG 0.502686 2.2:-2030702 MS.gene36329:CDS
AAAGAGGAAGCTAGATGGAA+AGG 0.505950 2.2:-2031029 MS.gene36329:CDS
TGATAAAATTGGTCCGCTGT+TGG 0.506211 2.2:-2030153 MS.gene36329:CDS
GGAAGCCTTTGCAGCAGTCA+TGG 0.506331 2.2:+2030892 None:intergenic
TGATGCTTTGCGAAGAAAGC+CGG 0.516338 2.2:-2030783 MS.gene36329:CDS
ATAGCCTTTGTGGGTGATGA+AGG 0.525756 2.2:-2030077 MS.gene36329:CDS
CCCTACTGGAGAAGTACAAA+GGG 0.526256 2.2:+2029854 None:intergenic
AGCAGCTCAAAATTGTTGCC+AGG 0.528190 2.2:-2030461 MS.gene36329:CDS
AGAGTATGCGTCAAGATTGA+GGG 0.529037 2.2:-2030657 MS.gene36329:CDS
CCCTCTTGAATTTGGAAATG+GGG 0.537216 2.2:-2030933 MS.gene36329:CDS
AAAGCCGGTTTGGGTGGATG+AGG 0.539602 2.2:-2030768 MS.gene36329:CDS
TCTCAGAACAAATGAAGACT+TGG 0.543934 2.2:-2030492 MS.gene36329:CDS
GAGCCGGGGTTATGAGGATC+TGG 0.545404 2.2:-2030522 MS.gene36329:CDS
AATATTAGCAATCTGTTCAA+GGG 0.545540 2.2:-2029688 MS.gene36329:CDS
ACTGGGCACAGCTTGATTCA+GGG 0.545660 2.2:-2030604 MS.gene36329:CDS
GGAAGCCATGACTGCTGCAA+AGG 0.547123 2.2:-2030897 MS.gene36329:CDS
CAATACAACGGGGATAATGC+AGG 0.553209 2.2:+2029589 None:intergenic
TTCTTGCTGCTGGATTAGAC+CGG 0.554524 2.2:-2030343 MS.gene36329:CDS
TGTGAATATTTACAATAGTG+AGG 0.554925 2.2:-2029799 MS.gene36329:CDS
AAAGCATCTTTCTTGCCCGA+TGG 0.557386 2.2:-2030242 MS.gene36329:CDS
GAAGATTCTGACTTCTCGGA+TGG 0.559324 2.2:-2030818 MS.gene36329:CDS
GGACAAAAGTTGTTGAGCAC+AGG 0.561120 2.2:-2029963 MS.gene36329:CDS
TCTAAAATGATAGCCTTTGT+GGG 0.566464 2.2:-2030086 MS.gene36329:CDS
CCCTTTGTACTTCTCCAGTA+GGG 0.569388 2.2:-2029854 MS.gene36329:CDS
GCGAAGAAAGCCGGTTTGGG+TGG 0.571477 2.2:-2030774 MS.gene36329:CDS
AAATGGGGATGACGATGAAG+GGG 0.571734 2.2:-2030918 MS.gene36329:CDS
GCCCTTTGTACTTCTCCAGT+AGG 0.573251 2.2:-2029855 MS.gene36329:CDS
CCCCATTTCCAAATTCAAGA+GGG 0.577015 2.2:+2030933 None:intergenic
AAGATGAACGGAACAGCCCG+TGG 0.578669 2.2:-2030005 MS.gene36329:CDS
TGATAACCTGAATACTGAAG+TGG 0.580415 2.2:-2029739 MS.gene36329:CDS
ATTATCACTTGAGACCCATC+GGG 0.584332 2.2:+2030227 None:intergenic
TATTATCACTTGAGACCCAT+CGG 0.587218 2.2:+2030226 None:intergenic
TTGTTGAGCACAGGTGGTGA+TGG 0.587267 2.2:-2029954 MS.gene36329:CDS
GCTGTGCCCAGTCAGTTCCT+CGG 0.588930 2.2:+2030615 None:intergenic
AGTAATGTTGTTGCGAGCCG+GGG 0.597573 2.2:-2030536 MS.gene36329:CDS
TCCCCATTTCCAAATTCAAG+AGG 0.600954 2.2:+2030932 None:intergenic
GAAGCAGCTGACCATTTCGA+TGG 0.604108 2.2:+2030363 None:intergenic
TCAGATCCCAATGGTAAACA+TGG 0.606421 2.2:+2029931 None:intergenic
TTCGAGTATTCAATATGACC+TGG 0.611892 2.2:+2030443 None:intergenic
TTTGCCTGAAGCGTTTCCTA+CGG 0.613638 2.2:+2029539 None:intergenic
TTCAGTAAAAGCTAACCCAC+GGG 0.618571 2.2:+2029989 None:intergenic
CTTCAGTAAAAGCTAACCCA+CGG 0.619827 2.2:+2029988 None:intergenic
CCCATTTCCAAATTCAAGAG+GGG 0.620312 2.2:+2030934 None:intergenic
CCAGTTAGAGAAAACAGTGT+AGG 0.620679 2.2:+2029629 None:intergenic
TCCCTACTGGAGAAGTACAA+AGG 0.621550 2.2:+2029853 None:intergenic
CTGGACTAAAATCAATACAA+CGG 0.621707 2.2:+2029577 None:intergenic
ACCATTGGGATCTGAGAACA+AGG 0.624102 2.2:-2029923 MS.gene36329:CDS
TAGAAATGAGTCCAAAAGAG+AGG 0.627482 2.2:-2031116 MS.gene36329:CDS
ACGGCCATAAAACCACCACC+TGG 0.629433 2.2:+2029558 None:intergenic
CAATAGTGAGGAATTTCTCG+GGG 0.630677 2.2:-2029787 MS.gene36329:CDS
CAAAAGTTGTTGAGCACAGG+TGG 0.633001 2.2:-2029960 MS.gene36329:CDS
TGCAGGCTTGCATTTGAACG+AGG 0.633932 2.2:+2029606 None:intergenic
GCTCAACCGAGGAACTGACT+GGG 0.636934 2.2:-2030621 MS.gene36329:CDS
GTTGGTACTCTGAAGATGAA+CGG 0.640176 2.2:-2030017 MS.gene36329:CDS
TTAGAGAAAACAGTGTAGGA+TGG 0.640295 2.2:+2029633 None:intergenic
CATCCAGATCCTCATAACCC+CGG 0.640892 2.2:+2030519 None:intergenic
ATAACCTTCATCACCCACAA+AGG 0.647464 2.2:+2030073 None:intergenic
ATGCACAAAGGTGTAGATGA+AGG 0.661644 2.2:-2029894 MS.gene36329:CDS
TTCTCTTCCCTATCCAACAG+CGG 0.664935 2.2:+2030140 None:intergenic
AATCTTCTTGGTAAACAGTG+AGG 0.688434 2.2:+2030834 None:intergenic
TGAGGCCACTATCAGCAGAA+CGG 0.695939 2.2:+2030852 None:intergenic
CAACATGTGAAGCTCAACCG+AGG 0.705882 2.2:-2030632 MS.gene36329:CDS
ACAAGGACTTGTATGCACAA+AGG 0.714733 2.2:-2029906 MS.gene36329:CDS
AGATGAACGGAACAGCCCGT+GGG 0.717846 2.2:-2030004 MS.gene36329:CDS
TCCTTGTTCTCAGATCCCAA+TGG 0.719029 2.2:+2029922 None:intergenic
AATAGTGAGGAATTTCTCGG+GGG 0.724146 2.2:-2029786 MS.gene36329:CDS
GGACTAAAATCAATACAACG+GGG 0.796660 2.2:+2029579 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAGTCTTGATTTAGTTA+AGG - chr2.2:2030462-2030481 MS.gene36329:CDS 20.0%
! AAATATTAGCAATCTGTTCA+AGG - chr2.2:2030956-2030975 MS.gene36329:CDS 25.0%
! AATATTAGCAATCTGTTCAA+GGG - chr2.2:2030957-2030976 MS.gene36329:CDS 25.0%
! ACAAAATCAAAGCAATTAGT+TGG - chr2.2:2030610-2030629 MS.gene36329:CDS 25.0%
! TGTGAATATTTACAATAGTG+AGG - chr2.2:2030846-2030865 MS.gene36329:CDS 25.0%
! TTAACAGATTAAGGAAGTTA+AGG - chr2.2:2029933-2029952 MS.gene36329:CDS 25.0%
!! AAACTTGAAAGCTTTTTGTT+TGG - chr2.2:2029677-2029696 MS.gene36329:CDS 25.0%
!! TGATGAAGGTTATATTTTAC+TGG - chr2.2:2030582-2030601 MS.gene36329:CDS 25.0%
!! TTTGAAAGAATCTAAGATTC+CGG + chr2.2:2030324-2030343 None:intergenic 25.0%
!!! AACTTGAAAGCTTTTTGTTT+GGG - chr2.2:2029678-2029697 MS.gene36329:CDS 25.0%
!!! AAGGAAAATGCTTTGAATTT+TGG + chr2.2:2030365-2030384 None:intergenic 25.0%
!!! GAAGAGTATTGAAATTTTTG+AGG - chr2.2:2030525-2030544 MS.gene36329:CDS 25.0%
AAGGAAAAAGAAGTTGAAGA+TGG - chr2.2:2029560-2029579 MS.gene36329:CDS 30.0%
CTGGACTAAAATCAATACAA+CGG + chr2.2:2031071-2031090 None:intergenic 30.0%
CTTAGATTCTTTCAAATCGA+TGG - chr2.2:2030328-2030347 MS.gene36329:CDS 30.0%
CTTCCTTAATCTGTTAACTT+TGG + chr2.2:2029930-2029949 None:intergenic 30.0%
TACAATAGTGAGGAATTTCT+CGG - chr2.2:2030856-2030875 MS.gene36329:CDS 30.0%
TAGCCAAAGTTAACAGATTA+AGG - chr2.2:2029924-2029943 MS.gene36329:CDS 30.0%
TGGACTAAAATCAATACAAC+GGG + chr2.2:2031070-2031089 None:intergenic 30.0%
TTCTAATGGTCCCATTAATT+CGG - chr2.2:2030252-2030271 MS.gene36329:CDS 30.0%
! AAGAAAGATGCTTTTCGAAT+GGG + chr2.2:2030397-2030416 None:intergenic 30.0%
! TCTAAAATGATAGCCTTTGT+GGG - chr2.2:2030559-2030578 MS.gene36329:CDS 30.0%
! TTCAGTATTCAGGTTATCAA+TGG + chr2.2:2030905-2030924 None:intergenic 30.0%
!! AAGGCTAGAGTTGATAAAAT+TGG - chr2.2:2030481-2030500 MS.gene36329:CDS 30.0%
!! TTCTAAAATGATAGCCTTTG+TGG - chr2.2:2030558-2030577 MS.gene36329:CDS 30.0%
!!! AAGGCTATCATTTTAGAATC+AGG + chr2.2:2030556-2030575 None:intergenic 30.0%
AACATTCAGGATCCTTCTAA+TGG - chr2.2:2030238-2030257 MS.gene36329:CDS 35.0%
AATCTTCTTGGTAAACAGTG+AGG + chr2.2:2029814-2029833 None:intergenic 35.0%
ACAATAGTGAGGAATTTCTC+GGG - chr2.2:2030857-2030876 MS.gene36329:CDS 35.0%
ACTTGTAGATGCAAACATTC+AGG - chr2.2:2030225-2030244 MS.gene36329:CDS 35.0%
AGATGGAAAGGAAGAAGATT+TGG - chr2.2:2029628-2029647 MS.gene36329:CDS 35.0%
ATACCGTAGAAGTGAAAAAG+AGG - chr2.2:2029600-2029619 MS.gene36329:CDS 35.0%
ATGGAACTGAACCGAATTAA+TGG + chr2.2:2030266-2030285 None:intergenic 35.0%
CAGATTAAGGAAGTTAAGGA+AGG - chr2.2:2029937-2029956 MS.gene36329:CDS 35.0%
GAATTAATGGGACCATTAGA+AGG + chr2.2:2030253-2030272 None:intergenic 35.0%
GATGATGAATTGACAGATGA+TGG - chr2.2:2030085-2030104 MS.gene36329:CDS 35.0%
GGACTAAAATCAATACAACG+GGG + chr2.2:2031069-2031088 None:intergenic 35.0%
GTAGATGAAGGCTGTTTAAA+CGG - chr2.2:2030763-2030782 MS.gene36329:CDS 35.0%
TAGAAATGAGTCCAAAAGAG+AGG - chr2.2:2029529-2029548 MS.gene36329:CDS 35.0%
TATTATCACTTGAGACCCAT+CGG + chr2.2:2030422-2030441 None:intergenic 35.0%
TCTCAGAACAAATGAAGACT+TGG - chr2.2:2030153-2030172 MS.gene36329:CDS 35.0%
TCTTTCAAATCGATGGCAAA+CGG - chr2.2:2030335-2030354 MS.gene36329:CDS 35.0%
TGAAATCCACTTCAGTATTC+AGG + chr2.2:2030915-2030934 None:intergenic 35.0%
TGATAACCTGAATACTGAAG+TGG - chr2.2:2030906-2030925 MS.gene36329:CDS 35.0%
TGGAACTGAACCGAATTAAT+GGG + chr2.2:2030265-2030284 None:intergenic 35.0%
TTAGAGAAAACAGTGTAGGA+TGG + chr2.2:2031015-2031034 None:intergenic 35.0%
TTCGAGTATTCAATATGACC+TGG + chr2.2:2030205-2030224 None:intergenic 35.0%
! AGAAAGATGCTTTTCGAATG+GGG + chr2.2:2030396-2030415 None:intergenic 35.0%
! AGGTTATCAATGGTCTTGAT+AGG + chr2.2:2030895-2030914 None:intergenic 35.0%
! CAAGAAAGATGCTTTTCGAA+TGG + chr2.2:2030398-2030417 None:intergenic 35.0%
!! CTTCCTCTTTTTCACTTCTA+CGG + chr2.2:2029606-2029625 None:intergenic 35.0%
!!! CGTTGTATTGATTTTAGTCC+AGG - chr2.2:2031069-2031088 MS.gene36329:CDS 35.0%
!!! TGTATTGATTTTAGTCCAGG+TGG - chr2.2:2031072-2031091 MS.gene36329:CDS 35.0%
AAAGAGGAAGCTAGATGGAA+AGG - chr2.2:2029616-2029635 MS.gene36329:CDS 40.0%
AAGGAAGTTAAGGAAGGAAG+AGG - chr2.2:2029943-2029962 MS.gene36329:CDS 40.0%
AATAGTGAGGAATTTCTCGG+GGG - chr2.2:2030859-2030878 MS.gene36329:CDS 40.0%
ACAAGGACTTGTATGCACAA+AGG - chr2.2:2030739-2030758 MS.gene36329:CDS 40.0%
ACGGTCAGTGAAGAACAAAT+TGG + chr2.2:2029777-2029796 None:intergenic 40.0%
AGAGTATGCGTCAAGATTGA+GGG - chr2.2:2029988-2030007 MS.gene36329:CDS 40.0%
ATAACCTTCATCACCCACAA+AGG + chr2.2:2030575-2030594 None:intergenic 40.0%
ATTATCACTTGAGACCCATC+GGG + chr2.2:2030421-2030440 None:intergenic 40.0%
CAAAAGAGAGGATGACGTTA+AGG - chr2.2:2029541-2029560 MS.gene36329:CDS 40.0%
CAATAGTGAGGAATTTCTCG+GGG - chr2.2:2030858-2030877 MS.gene36329:CDS 40.0%
CCAAGAAGATTCTGACTTCT+CGG - chr2.2:2029823-2029842 MS.gene36329:CDS 40.0%
CCAGTTAGAGAAAACAGTGT+AGG + chr2.2:2031019-2031038 None:intergenic 40.0%
CCCATTTCCAAATTCAAGAG+GGG + chr2.2:2029714-2029733 None:intergenic 40.0%
CCCCATTTCCAAATTCAAGA+GGG + chr2.2:2029715-2029734 None:intergenic 40.0%
CCCCTCTTGAATTTGGAAAT+GGG - chr2.2:2029711-2029730 MS.gene36329:CDS 40.0%
CCCTCTTGAATTTGGAAATG+GGG - chr2.2:2029712-2029731 MS.gene36329:CDS 40.0%
CTTCAGTAAAAGCTAACCCA+CGG + chr2.2:2030660-2030679 None:intergenic 40.0%
GATTCAGGGTCAAAAATGGA+TGG - chr2.2:2030055-2030074 MS.gene36329:CDS 40.0%
GCTTGATTCAGGGTCAAAAA+TGG - chr2.2:2030051-2030070 MS.gene36329:CDS 40.0%
GGGTCTCAAGTGATAATATC+TGG - chr2.2:2030424-2030443 MS.gene36329:CDS 40.0%
GTGAAAAAGAGGAAGCTAGA+TGG - chr2.2:2029611-2029630 MS.gene36329:CDS 40.0%
TCAGATCCCAATGGTAAACA+TGG + chr2.2:2030717-2030736 None:intergenic 40.0%
TCCCCATTTCCAAATTCAAG+AGG + chr2.2:2029716-2029735 None:intergenic 40.0%
TCCCCTCTTGAATTTGGAAA+TGG - chr2.2:2029710-2029729 MS.gene36329:CDS 40.0%
TGATAAAATTGGTCCGCTGT+TGG - chr2.2:2030492-2030511 MS.gene36329:CDS 40.0%
TGATGGCCATGTTTACCATT+GGG - chr2.2:2030708-2030727 MS.gene36329:CDS 40.0%
TTCAGTAAAAGCTAACCCAC+GGG + chr2.2:2030659-2030678 None:intergenic 40.0%
! ATGCACAAAGGTGTAGATGA+AGG - chr2.2:2030751-2030770 MS.gene36329:CDS 40.0%
! CCTACACTGTTTTCTCTAAC+TGG - chr2.2:2031016-2031035 MS.gene36329:CDS 40.0%
! CTTAACGTCATCCTCTCTTT+TGG + chr2.2:2029543-2029562 None:intergenic 40.0%
! GTTGGTACTCTGAAGATGAA+CGG - chr2.2:2030628-2030647 MS.gene36329:CDS 40.0%
!! ATTGATTTTAGTCCAGGTGG+TGG - chr2.2:2031075-2031094 MS.gene36329:CDS 40.0%
!!! GGGTTAGCTTTTACTGAAGA+TGG - chr2.2:2030661-2030680 MS.gene36329:CDS 40.0%
AAATGGGGATGACGATGAAG+GGG - chr2.2:2029727-2029746 MS.gene36329:CDS 45.0%
AAATTGGTCCGCTGTTGGAT+AGG - chr2.2:2030497-2030516 MS.gene36329:CDS 45.0%
AAGCATCTTTCTTGCCCGAT+GGG - chr2.2:2030404-2030423 MS.gene36329:CDS 45.0%
AAGTAATGTTGTTGCGAGCC+GGG - chr2.2:2030108-2030127 MS.gene36329:CDS 45.0%
AATTGGTCCGCTGTTGGATA+GGG - chr2.2:2030498-2030517 MS.gene36329:CDS 45.0%
ACCATTGGGATCTGAGAACA+AGG - chr2.2:2030722-2030741 MS.gene36329:CDS 45.0%
AGCAGCTCAAAATTGTTGCC+AGG - chr2.2:2030184-2030203 MS.gene36329:CDS 45.0%
ATAGCCTTTGTGGGTGATGA+AGG - chr2.2:2030568-2030587 MS.gene36329:CDS 45.0%
CAAAAGTTGTTGAGCACAGG+TGG - chr2.2:2030685-2030704 MS.gene36329:CDS 45.0%
CAATACAACGGGGATAATGC+AGG + chr2.2:2031059-2031078 None:intergenic 45.0%
CAGAGTATGCGTCAAGATTG+AGG - chr2.2:2029987-2030006 MS.gene36329:CDS 45.0%
CCCTTTGTACTTCTCCAGTA+GGG - chr2.2:2030791-2030810 MS.gene36329:CDS 45.0%
CCGAGAAGTCAGAATCTTCT+TGG + chr2.2:2029826-2029845 None:intergenic 45.0%
CTCTACTCCCCTCTTGAATT+TGG - chr2.2:2029704-2029723 MS.gene36329:CDS 45.0%
GAAATGGGGATGACGATGAA+GGG - chr2.2:2029726-2029745 MS.gene36329:CDS 45.0%
GAAGATTCTGACTTCTCGGA+TGG - chr2.2:2029827-2029846 MS.gene36329:CDS 45.0%
GAAGTAATGTTGTTGCGAGC+CGG - chr2.2:2030107-2030126 MS.gene36329:CDS 45.0%
GAGGACGAGAATGTGATATC+TGG - chr2.2:2029962-2029981 MS.gene36329:CDS 45.0%
GGACAAAAGTTGTTGAGCAC+AGG - chr2.2:2030682-2030701 MS.gene36329:CDS 45.0%
GTGATGGCCATGTTTACCAT+TGG - chr2.2:2030707-2030726 MS.gene36329:CDS 45.0%
TCCTTGTTCTCAGATCCCAA+TGG + chr2.2:2030726-2030745 None:intergenic 45.0%
TCGGTTCAGTTCCATCGAAA+TGG - chr2.2:2030271-2030290 MS.gene36329:CDS 45.0%
TGATGCTTTGCGAAGAAAGC+CGG - chr2.2:2029862-2029881 MS.gene36329:CDS 45.0%
TTCGAATGGGGCAATCTTCA+AGG + chr2.2:2030384-2030403 None:intergenic 45.0%
TTCTCTTCCCTATCCAACAG+CGG + chr2.2:2030508-2030527 None:intergenic 45.0%
! AAAGCATCTTTCTTGCCCGA+TGG - chr2.2:2030403-2030422 MS.gene36329:CDS 45.0%
! CCCTACTGGAGAAGTACAAA+GGG + chr2.2:2030794-2030813 None:intergenic 45.0%
! GACACATTTTGCAGCTGGTT+CGG - chr2.2:2030813-2030832 MS.gene36329:CDS 45.0%
! TCCCTACTGGAGAAGTACAA+AGG + chr2.2:2030795-2030814 None:intergenic 45.0%
! TTCTTGCTGCTGGATTAGAC+CGG - chr2.2:2030302-2030321 MS.gene36329:CDS 45.0%
! TTTGCCTGAAGCGTTTCCTA+CGG + chr2.2:2031109-2031128 None:intergenic 45.0%
! TTTGCGAAGAAAGCCGGTTT+GGG - chr2.2:2029868-2029887 MS.gene36329:CDS 45.0%
!! TAGTCCAGGTGGTGGTTTTA+TGG - chr2.2:2031083-2031102 MS.gene36329:CDS 45.0%
ACTGACCGTTCTGCTGATAG+TGG - chr2.2:2029788-2029807 MS.gene36329:CDS 50.0%
ACTGGGCACAGCTTGATTCA+GGG - chr2.2:2030041-2030060 MS.gene36329:CDS 50.0%
AGTAATGTTGTTGCGAGCCG+GGG - chr2.2:2030109-2030128 MS.gene36329:CDS 50.0%
CAACATGTGAAGCTCAACCG+AGG - chr2.2:2030013-2030032 MS.gene36329:CDS 50.0%
CATCCAGATCCTCATAACCC+CGG + chr2.2:2030129-2030148 None:intergenic 50.0%
CTTTGCGAAGAAAGCCGGTT+TGG - chr2.2:2029867-2029886 MS.gene36329:CDS 50.0%
GAAGCAGCTGACCATTTCGA+TGG + chr2.2:2030285-2030304 None:intergenic 50.0%
GCCCTTTGTACTTCTCCAGT+AGG - chr2.2:2030790-2030809 MS.gene36329:CDS 50.0%
GCTGCAAAATGTGTCCCTAC+TGG + chr2.2:2030808-2030827 None:intergenic 50.0%
GGAAATGGGGATGACGATGA+AGG - chr2.2:2029725-2029744 MS.gene36329:CDS 50.0%
TCTTCCTCATCCACCCAAAC+CGG + chr2.2:2029884-2029903 None:intergenic 50.0%
TGAGGCCACTATCAGCAGAA+CGG + chr2.2:2029796-2029815 None:intergenic 50.0%
TGCAGGCTTGCATTTGAACG+AGG + chr2.2:2031042-2031061 None:intergenic 50.0%
TTGTTGAGCACAGGTGGTGA+TGG - chr2.2:2030691-2030710 MS.gene36329:CDS 50.0%
! GTAGGGACACATTTTGCAGC+TGG - chr2.2:2030808-2030827 MS.gene36329:CDS 50.0%
AAGATGAACGGAACAGCCCG+TGG - chr2.2:2030640-2030659 MS.gene36329:CDS 55.0%
ACGGCCATAAAACCACCACC+TGG + chr2.2:2031090-2031109 None:intergenic 55.0%
AGATGAACGGAACAGCCCGT+GGG - chr2.2:2030641-2030660 MS.gene36329:CDS 55.0%
AGCTCAACCGAGGAACTGAC+TGG - chr2.2:2030023-2030042 MS.gene36329:CDS 55.0%
ATGGCCGTAGGAAACGCTTC+AGG - chr2.2:2031102-2031121 MS.gene36329:CDS 55.0%
GACTGGGCACAGCTTGATTC+AGG - chr2.2:2030040-2030059 MS.gene36329:CDS 55.0%
GCTCAACCGAGGAACTGACT+GGG - chr2.2:2030024-2030043 MS.gene36329:CDS 55.0%
GGAAGCCATGACTGCTGCAA+AGG - chr2.2:2029748-2029767 MS.gene36329:CDS 55.0%
GGAAGCCTTTGCAGCAGTCA+TGG + chr2.2:2029756-2029775 None:intergenic 55.0%
!! AAAGCCGGTTTGGGTGGATG+AGG - chr2.2:2029877-2029896 MS.gene36329:CDS 55.0%
!! TTTGCAGCTGGTTCGGCTAG+TGG - chr2.2:2030820-2030839 MS.gene36329:CDS 55.0%
!!! GGTGGTGGTTTTATGGCCGT+AGG - chr2.2:2031090-2031109 MS.gene36329:CDS 55.0%
GAGCCGGGGTTATGAGGATC+TGG - chr2.2:2030123-2030142 MS.gene36329:CDS 60.0%
GCTGTGCCCAGTCAGTTCCT+CGG + chr2.2:2030033-2030052 None:intergenic 60.0%
GGTCAGCTGCTTCTTGCTGC+TGG - chr2.2:2030292-2030311 MS.gene36329:CDS 60.0%
TGTTGCGAGCCGGGGTTATG+AGG - chr2.2:2030117-2030136 MS.gene36329:CDS 60.0%
!! GCGAAGAAAGCCGGTTTGGG+TGG - chr2.2:2029871-2029890 MS.gene36329:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 2029500 2031167 2029500 ID=MS.gene36329
chr2.2 mRNA 2029500 2031167 2029500 ID=MS.gene36329.t1;Parent=MS.gene36329
chr2.2 exon 2029500 2031167 2029500 ID=MS.gene36329.t1.exon1;Parent=MS.gene36329.t1
chr2.2 CDS 2029500 2031167 2029500 ID=cds.MS.gene36329.t1;Parent=MS.gene36329.t1
Gene Sequence

>MS.gene36329

ATGAGTTTAATATCTCAAAATGCTCGTTCTAGAAATGAGTCCAAAAGAGAGGATGACGTTAAGGAAAAAGAAGTTGAAGATGGTCAAGATAATGATGTTGATACCGTAGAAGTGAAAAAGAGGAAGCTAGATGGAAAGGAAGAAGATTTGGCAAAAGAACAAGTTAAAGAGATGAAAAAACTTGAAAGCTTTTTGTTTGGGTCTCTCTACTCCCCTCTTGAATTTGGAAATGGGGATGACGATGAAGGGGAAGCCATGACTGCTGCAAAGGCTTCCAATTTGTTCTTCACTGACCGTTCTGCTGATAGTGGCCTCACTGTTTACCAAGAAGATTCTGACTTCTCGGATGGAAGTTGTGATGATGATGCTTTGCGAAGAAAGCCGGTTTGGGTGGATGAGGAAGAAGAGAAAGTCACTGTTAACATAGCCAAAGTTAACAGATTAAGGAAGTTAAGGAAGGAAGAGGACGAGAATGTGATATCTGGTTCAGAGTATGCGTCAAGATTGAGGGCTCAACATGTGAAGCTCAACCGAGGAACTGACTGGGCACAGCTTGATTCAGGGTCAAAAATGGATGGATCTTCTGATGATGAATTGACAGATGATGGAAGTAATGTTGTTGCGAGCCGGGGTTATGAGGATCTGGATGATATTCTCAGAACAAATGAAGACTTGGTTGTGAAGAGCAGCTCAAAATTGTTGCCAGGTCATATTGAATACTCGAAACTTGTAGATGCAAACATTCAGGATCCTTCTAATGGTCCCATTAATTCGGTTCAGTTCCATCGAAATGGTCAGCTGCTTCTTGCTGCTGGATTAGACCGGAATCTTAGATTCTTTCAAATCGATGGCAAACGGAACACCAAAATTCAAAGCATTTTCCTTGAAGATTGCCCCATTCGAAAAGCATCTTTCTTGCCCGATGGGTCTCAAGTGATAATATCTGGAAGAAGAAAGTTCTTTTATAGTCTTGATTTAGTTAAGGCTAGAGTTGATAAAATTGGTCCGCTGTTGGATAGGGAAGAGAAGAGTATTGAAATTTTTGAGGTCTCTCCTGATTCTAAAATGATAGCCTTTGTGGGTGATGAAGGTTATATTTTACTGGTTTCAACAAAATCAAAGCAATTAGTTGGTACTCTGAAGATGAACGGAACAGCCCGTGGGTTAGCTTTTACTGAAGATGGACAAAAGTTGTTGAGCACAGGTGGTGATGGCCATGTTTACCATTGGGATCTGAGAACAAGGACTTGTATGCACAAAGGTGTAGATGAAGGCTGTTTAAACGGCACAGCCCTTTGTACTTCTCCAGTAGGGACACATTTTGCAGCTGGTTCGGCTAGTGGAGTTGTGAATATTTACAATAGTGAGGAATTTCTCGGGGGAAAGAGAAAACCTATCAAGACCATTGATAACCTGAATACTGAAGTGGATTTCATGAAATTTAATCATGACTCTCAAATATTAGCAATCTGTTCAAGGGCAAAGAGTAGTAGTTTGAAATTAATACATATACCATCCTACACTGTTTTCTCTAACTGGCCTCGTTCAAATGCAAGCCTGCATTATCCCCGTTGTATTGATTTTAGTCCAGGTGGTGGTTTTATGGCCGTAGGAAACGCTTCAGGCAAAGTGTTACTCTATAAGTTGCATCATTATCACCATGCCTAA
Protein sequence

>MS.gene36329.t1

MSLISQNARSRNESKREDDVKEKEVEDGQDNDVDTVEVKKRKLDGKEEDLAKEQVKEMKKLESFLFGSLYSPLEFGNGDDDEGEAMTAAKASNLFFTDRSADSGLTVYQEDSDFSDGSCDDDALRRKPVWVDEEEEKVTVNIAKVNRLRKLRKEEDENVISGSEYASRLRAQHVKLNRGTDWAQLDSGSKMDGSSDDELTDDGSNVVASRGYEDLDDILRTNEDLVVKSSSKLLPGHIEYSKLVDANIQDPSNGPINSVQFHRNGQLLLAAGLDRNLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVIISGRRKFFYSLDLVKARVDKIGPLLDREEKSIEIFEVSPDSKMIAFVGDEGYILLVSTKSKQLVGTLKMNGTARGLAFTEDGQKLLSTGGDGHVYHWDLRTRTCMHKGVDEGCLNGTALCTSPVGTHFAAGSASGVVNIYNSEEFLGGKRKPIKTIDNLNTEVDFMKFNHDSQILAICSRAKSSSLKLIHIPSYTVFSNWPRSNASLHYPRCIDFSPGGGFMAVGNASGKVLLYKLHHYHHA