Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063568.t1 | RHN78568.1 | 94.6 | 965 | 44 | 4 | 132 | 1096 | 1 | 957 | 0.00E+00 | 1427.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063568.t1 | Q8R3N1 | 35.1 | 932 | 495 | 17 | 175 | 1093 | 26 | 860 | 7.0e-52 | 207.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063568.t1 | A0A396JQQ9 | 94.6 | 965 | 44 | 4 | 132 | 1096 | 1 | 957 | 0.0e+00 | 1427.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene063568 | 0.803205 | 3.90E-49 | -1.69E-46 |
| MS.gene050114 | MS.gene063568 | 0.807802 | 4.23E-50 | -1.69E-46 |
| MS.gene050317 | MS.gene063568 | 0.824602 | 7.38E-54 | -1.69E-46 |
| MS.gene052434 | MS.gene063568 | 0.80802 | 3.80E-50 | -1.69E-46 |
| MS.gene053381 | MS.gene063568 | 0.954056 | 6.96E-112 | -1.69E-46 |
| MS.gene058654 | MS.gene063568 | 0.801238 | 9.90E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene063568 | 0.829339 | 5.44E-55 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063568.t1 | MTR_1g064300 | 94.105 | 967 | 52 | 2 | 132 | 1096 | 1 | 964 | 0.0 | 1647 |
| MS.gene063568.t1 | MTR_1g442830 | 93.057 | 965 | 48 | 5 | 132 | 1096 | 1 | 946 | 0.0 | 1635 |
| MS.gene063568.t1 | MTR_1g064300 | 95.119 | 758 | 35 | 1 | 341 | 1096 | 1 | 758 | 0.0 | 1318 |
| MS.gene063568.t1 | MTR_1g064300 | 91.944 | 720 | 53 | 2 | 132 | 849 | 1 | 717 | 0.0 | 1125 |
| MS.gene063568.t1 | MTR_1g442820 | 95.181 | 581 | 27 | 1 | 341 | 921 | 1 | 580 | 0.0 | 1120 |
| MS.gene063568.t1 | MTR_5g016590 | 85.246 | 61 | 9 | 0 | 1 | 61 | 1 | 61 | 2.19e-24 | 103 |
| MS.gene063568.t1 | MTR_7g070070 | 85.246 | 61 | 9 | 0 | 1 | 61 | 1 | 61 | 3.20e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063568.t1 | AT1G69070 | 51.180 | 932 | 396 | 13 | 161 | 1088 | 18 | 894 | 0.0 | 823 |
| MS.gene063568.t1 | AT1G69070 | 50.966 | 932 | 395 | 14 | 161 | 1088 | 18 | 891 | 0.0 | 815 |
| MS.gene063568.t1 | AT3G22110 | 81.967 | 61 | 11 | 0 | 1 | 61 | 1 | 61 | 1.20e-23 | 102 |
| MS.gene063568.t1 | AT4G15165 | 79.032 | 62 | 13 | 0 | 1 | 62 | 1 | 62 | 4.34e-23 | 99.0 |
Find 208 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCCAATGACTATCTTCT+TGG | 0.180101 | 1.3:-25571352 | None:intergenic |
| TCTTCACCACTGACAGTTTC+AGG | 0.201686 | 1.3:+25575592 | MS.gene063568:CDS |
| TTCATCCATCACTTCCTTCT+TGG | 0.214277 | 1.3:-25569909 | None:intergenic |
| CTGCCAGTTATATCATCTTA+TGG | 0.216501 | 1.3:+25575467 | MS.gene063568:intron |
| TGAAGAAACTATGACTAAAA+AGG | 0.225009 | 1.3:+25570960 | MS.gene063568:CDS |
| TGCTTTCATGGCTACTGCTT+CGG | 0.244088 | 1.3:-25567033 | None:intergenic |
| GTTGTTCTTCTTCTTCTTGC+TGG | 0.262193 | 1.3:-25567000 | None:intergenic |
| TTCAAAGCTTTCATCTTGTT+TGG | 0.273827 | 1.3:-25570155 | None:intergenic |
| GATGAAGGGCTTGATGATTT+TGG | 0.273921 | 1.3:+25567263 | MS.gene063568:CDS |
| GCTTTCATGGCTACTGCTTC+GGG | 0.294884 | 1.3:-25567032 | None:intergenic |
| GGCTCATTCCGAGGCCTTGT+TGG | 0.298038 | 1.3:+25570121 | MS.gene063568:CDS |
| TCAAGTAGTAATCTCAAAAT+TGG | 0.299845 | 1.3:-25575992 | None:intergenic |
| TTCGGAGCTTCAATTATATA+AGG | 0.299927 | 1.3:-25571399 | None:intergenic |
| AGAATACTACTTTGAAAGAT+TGG | 0.304400 | 1.3:+25571124 | MS.gene063568:CDS |
| GTCAAAAGATGGGGTTGTTC+TGG | 0.308866 | 1.3:+25565992 | MS.gene063568:CDS |
| ATATCACGGCCAGATGTTAT+TGG | 0.309858 | 1.3:-25573149 | None:intergenic |
| TACCTTGAAGATATGAGATT+TGG | 0.314591 | 1.3:-25566172 | None:intergenic |
| GCACATATTGCAGCAAAGTA+TGG | 0.315156 | 1.3:-25572823 | None:intergenic |
| CTTTCAGCTCGCTCACGGTC+TGG | 0.326015 | 1.3:-25576323 | None:intergenic |
| AAAGTTTGAATAAATACTAT+TGG | 0.330563 | 1.3:-25574138 | None:intergenic |
| TGAATAAATACTATTGGTTC+AGG | 0.334462 | 1.3:-25574132 | None:intergenic |
| TTGGATGATTTCGCCATTGT+TGG | 0.340307 | 1.3:-25566930 | None:intergenic |
| CAAGAACATGCTTTCAAATC+TGG | 0.340841 | 1.3:+25576506 | MS.gene063568:CDS |
| TTCTTGATGCAGCTATGTTA+AGG | 0.341761 | 1.3:+25576286 | MS.gene063568:intron |
| GGTGTCGTTCATCATTTCTT+GGG | 0.349862 | 1.3:-25566088 | None:intergenic |
| CCTCCATTGCATACTCCATT+TGG | 0.354454 | 1.3:-25565935 | None:intergenic |
| TTCAGTAATTTGATTGGAAC+TGG | 0.357854 | 1.3:-25576142 | None:intergenic |
| AAGCATGTTCTTGCTCTTGA+AGG | 0.361044 | 1.3:-25576496 | None:intergenic |
| TTTAGTCCTTCCATACTTCT+CGG | 0.367067 | 1.3:-25576468 | None:intergenic |
| AAAGCAAGAGCCGAGAAGTA+TGG | 0.375543 | 1.3:+25576458 | MS.gene063568:CDS |
| TTTGAAGATGAGATGCTTGA+TGG | 0.376740 | 1.3:+25569145 | MS.gene063568:CDS |
| TCCATTGGCGATGCTGCGTT+TGG | 0.376795 | 1.3:-25566949 | None:intergenic |
| AATCTTCGGAGTTTATTGAT+AGG | 0.376829 | 1.3:+25567225 | MS.gene063568:CDS |
| GAAAGTGTAAAGGGAGATAA+TGG | 0.377920 | 1.3:+25571318 | MS.gene063568:CDS |
| ACGGTTATACTTTGTTGGTT+TGG | 0.380500 | 1.3:-25566129 | None:intergenic |
| TGATATATGTTTACTTTCAC+TGG | 0.382405 | 1.3:-25574172 | None:intergenic |
| TTAGGATTCAGTAATTTGAT+TGG | 0.384079 | 1.3:-25576148 | None:intergenic |
| AAAATATGCCAAATGCATTA+CGG | 0.387295 | 1.3:+25576029 | MS.gene063568:CDS |
| GACAATGAATAATTCTGTTC+AGG | 0.394333 | 1.3:+25570241 | MS.gene063568:CDS |
| AGGTGAGGCGCGAAGCTAAA+GGG | 0.397180 | 1.3:+25576363 | MS.gene063568:CDS |
| AGTATCACAGGAGTCATAAC+TGG | 0.397195 | 1.3:-25573098 | None:intergenic |
| AAACAAGATGAAAGCTTTGA+AGG | 0.398300 | 1.3:+25570157 | MS.gene063568:CDS |
| ATTACTGAATCCTAAGTTTG+AGG | 0.398976 | 1.3:+25576156 | MS.gene063568:CDS |
| GATTTCGCCATTGTTGGGTT+TGG | 0.400700 | 1.3:-25566924 | None:intergenic |
| GGTTTGGTTATGCAGAAGTT+TGG | 0.401557 | 1.3:-25566036 | None:intergenic |
| GGGTGTCGTTCATCATTTCT+TGG | 0.403008 | 1.3:-25566089 | None:intergenic |
| TTTGCAGATAATTCAGATAT+GGG | 0.403101 | 1.3:+25569568 | MS.gene063568:intron |
| TCTTGATGCAGCTATGTTAA+GGG | 0.406379 | 1.3:+25576287 | MS.gene063568:intron |
| GGTGAAGAATGGAGAGTCTT+CGG | 0.406595 | 1.3:-25575577 | None:intergenic |
| TGACCAACTTGTCAGACAAA+TGG | 0.412014 | 1.3:+25570369 | MS.gene063568:CDS |
| AAATATGCCAAATGCATTAC+GGG | 0.415102 | 1.3:+25576030 | MS.gene063568:CDS |
| TAGAAAAGGGTATTGTGGTT+TGG | 0.415825 | 1.3:-25566052 | None:intergenic |
| TCCGTACTCATCTCTATCAA+TGG | 0.415890 | 1.3:-25572796 | None:intergenic |
| GAGATCGCAGCGTGAACGTC+AGG | 0.416024 | 1.3:+25567298 | MS.gene063568:CDS |
| AACCAAATCTCATATCTTCA+AGG | 0.417427 | 1.3:+25566170 | MS.gene063568:CDS |
| GAAGATGATGATGAGTTTGA+AGG | 0.419285 | 1.3:+25569097 | MS.gene063568:CDS |
| GAATACTACTTTGAAAGATT+GGG | 0.420352 | 1.3:+25571125 | MS.gene063568:CDS |
| TTAATCAATTCAACGTTCAA+TGG | 0.421058 | 1.3:-25572760 | None:intergenic |
| TATCACGGCCAGATGTTATT+GGG | 0.421115 | 1.3:-25573148 | None:intergenic |
| ATCGAAATCTTGTCAAAAGA+TGG | 0.422722 | 1.3:+25565981 | MS.gene063568:CDS |
| TCATCACCAGAGAGAGATCT+TGG | 0.422739 | 1.3:-25570913 | None:intergenic |
| AGACAACGGTTATACTTTGT+TGG | 0.423615 | 1.3:-25566134 | None:intergenic |
| GATTCTGTTGAAAGTGTAAA+GGG | 0.427997 | 1.3:+25571309 | MS.gene063568:CDS |
| GATGAGTTTGAAGGAATTGA+TGG | 0.429378 | 1.3:+25569106 | MS.gene063568:CDS |
| TCCTCATTAATGCGCAATAG+TGG | 0.429661 | 1.3:-25575507 | None:intergenic |
| ACGAGCCAACCCCATTCGTT+TGG | 0.430062 | 1.3:-25567144 | None:intergenic |
| CATAATTCTTCAAAGGTCTT+CGG | 0.431108 | 1.3:-25571417 | None:intergenic |
| AGGCATTGATATATCCTTGT+AGG | 0.432380 | 1.3:-25575934 | None:intergenic |
| CATAACTGGATGTCTAAAAT+CGG | 0.433346 | 1.3:-25573084 | None:intergenic |
| CGTAGGAAATTCGAAGTAAT+GGG | 0.434226 | 1.3:+25567101 | MS.gene063568:CDS |
| TTTGAAGGAATTGATGGTCT+TGG | 0.436407 | 1.3:+25569112 | MS.gene063568:CDS |
| CCAACCCATTCGAGTCAATC+TGG | 0.436609 | 1.3:+25567075 | MS.gene063568:CDS |
| AAATCTGGACAACTAGGAAA+AGG | 0.438682 | 1.3:+25576521 | MS.gene063568:CDS |
| GAAATCCGATTGGAATGAAT+CGG | 0.439224 | 1.3:+25566308 | MS.gene063568:CDS |
| GTGAAGAATGGAGAGTCTTC+GGG | 0.439648 | 1.3:-25575576 | None:intergenic |
| AATGCCAAGAAGATAGTCAT+TGG | 0.441829 | 1.3:+25571348 | MS.gene063568:CDS |
| GAGTATGCAATGGAGGCTAA+TGG | 0.442162 | 1.3:+25565942 | MS.gene063568:CDS |
| AGATAAGGACTTCACTTCTC+TGG | 0.442591 | 1.3:+25570100 | MS.gene063568:CDS |
| TGGTGAAGATGATGATGATT+TGG | 0.442638 | 1.3:+25571047 | MS.gene063568:CDS |
| AAGAGAACATCTAGAGGAGT+TGG | 0.446316 | 1.3:+25570456 | MS.gene063568:CDS |
| TATATCATGCGAAAATTCTC+AGG | 0.447408 | 1.3:+25574188 | MS.gene063568:CDS |
| TGGATGATTTCGCCATTGTT+GGG | 0.447701 | 1.3:-25566929 | None:intergenic |
| GAGGAAGAAGACACTTCTTA+AGG | 0.451715 | 1.3:+25567184 | MS.gene063568:CDS |
| GATGAAAGCTTTGAAGGCTC+TGG | 0.454907 | 1.3:+25570163 | MS.gene063568:CDS |
| ACAAGTTGGTCATATTCATC+AGG | 0.458842 | 1.3:-25570358 | None:intergenic |
| GACCAACTTGTCAGACAAAT+GGG | 0.467069 | 1.3:+25570370 | MS.gene063568:CDS |
| TCTTAATCATCAATCGGATT+CGG | 0.468845 | 1.3:+25571475 | MS.gene063568:CDS |
| GTTGTTGTTGCTGGTTCCAT+TGG | 0.476235 | 1.3:-25566964 | None:intergenic |
| ATCCCATTTGTCTGACAAGT+TGG | 0.477539 | 1.3:-25570372 | None:intergenic |
| GAACGAACTCAAGTTATCAT+AGG | 0.478056 | 1.3:-25575954 | None:intergenic |
| TCGGCTACGCTAGCTTCGCC+TGG | 0.480987 | 1.3:-25569622 | None:intergenic |
| CTACTTCTTGCTTGATGTGA+AGG | 0.483308 | 1.3:+25576412 | MS.gene063568:CDS |
| ACGTAGGAAATTCGAAGTAA+TGG | 0.485316 | 1.3:+25567100 | MS.gene063568:CDS |
| GACTCAGGAAGAGATTGATC+AGG | 0.485715 | 1.3:+25570429 | MS.gene063568:CDS |
| ACACTATCTTAATCATCAAT+CGG | 0.489425 | 1.3:+25571469 | MS.gene063568:CDS |
| ATTTGGTAAAGATGTCCTTC+AGG | 0.490356 | 1.3:-25565918 | None:intergenic |
| GAAGAAGAAGAACAACAAGA+TGG | 0.491758 | 1.3:+25567007 | MS.gene063568:CDS |
| TTCAGATAGGCTGAAGACTC+AGG | 0.492192 | 1.3:+25570414 | MS.gene063568:CDS |
| GGCATTGATATATCCTTGTA+GGG | 0.493842 | 1.3:-25575933 | None:intergenic |
| AGCTGCGGAAGAAGTTGATA+AGG | 0.495706 | 1.3:+25571242 | MS.gene063568:CDS |
| AGGTCTGAAGATTCTGATGA+TGG | 0.496264 | 1.3:+25571072 | MS.gene063568:CDS |
| TGAAGGACATCTTTACCAAA+TGG | 0.499020 | 1.3:+25565920 | MS.gene063568:CDS |
| AGTCAGAGCCAACAAGGCCT+CGG | 0.501493 | 1.3:-25570129 | None:intergenic |
| AAAGGAGATACCAAACGAAT+GGG | 0.501676 | 1.3:+25567134 | MS.gene063568:CDS |
| ATGCGTTGCCCAATAACATC+TGG | 0.502843 | 1.3:+25573140 | MS.gene063568:CDS |
| TGAACAGAGTAACAAATCTT+CGG | 0.505782 | 1.3:+25567211 | MS.gene063568:CDS |
| TTCGTCTTCTGAACCAGCAC+TGG | 0.507317 | 1.3:-25571202 | None:intergenic |
| TCGAAATCTTGTCAAAAGAT+GGG | 0.508922 | 1.3:+25565982 | MS.gene063568:CDS |
| GCCACTATTGCGCATTAATG+AGG | 0.509019 | 1.3:+25575506 | MS.gene063568:CDS |
| GAGTTTATTGATAGGCGAAT+CGG | 0.509318 | 1.3:+25567233 | MS.gene063568:CDS |
| CACTGTGTCTATTGCGATTG+TGG | 0.509709 | 1.3:+25573042 | MS.gene063568:CDS |
| AAGATGGCTTGTCTGCTAAA+CGG | 0.510993 | 1.3:+25570219 | MS.gene063568:CDS |
| GAGAAACCAAGATCTCTCTC+TGG | 0.511990 | 1.3:+25570907 | MS.gene063568:CDS |
| CTGACCCGATTCATTCCAAT+CGG | 0.512564 | 1.3:-25566313 | None:intergenic |
| CGAATCGGTGAGAATGATGA+AGG | 0.515160 | 1.3:+25567248 | MS.gene063568:CDS |
| CACTTCTCTGGCTCATTCCG+AGG | 0.518270 | 1.3:+25570112 | MS.gene063568:CDS |
| GAGGTGAGGCGCGAAGCTAA+AGG | 0.518340 | 1.3:+25576362 | MS.gene063568:CDS |
| TGATTCTGTTGAAAGTGTAA+AGG | 0.522453 | 1.3:+25571308 | MS.gene063568:CDS |
| AAGCTAGCGTAGCCGACGGT+GGG | 0.522840 | 1.3:+25569629 | MS.gene063568:CDS |
| AATCTGGACAACTAGGAAAA+GGG | 0.524082 | 1.3:+25576522 | MS.gene063568:CDS |
| AAGGAATTGATGGTCTTGGA+AGG | 0.527484 | 1.3:+25569116 | MS.gene063568:CDS |
| TGAAGAATTATGTTCACTAG+TGG | 0.527610 | 1.3:+25571428 | MS.gene063568:CDS |
| CACATATTGCAGCAAAGTAT+GGG | 0.528243 | 1.3:-25572822 | None:intergenic |
| TTATATGGTGGAAATCCGAT+TGG | 0.528328 | 1.3:+25566298 | MS.gene063568:CDS |
| GCTTTCAAATCTGGACAACT+AGG | 0.529239 | 1.3:+25576515 | MS.gene063568:CDS |
| AGAACATCTAGAGGAGTTGG+AGG | 0.530134 | 1.3:+25570459 | MS.gene063568:CDS |
| GGAAGTAGAAAAGGGTATTG+TGG | 0.530712 | 1.3:-25566057 | None:intergenic |
| CAGATAATTCAGATATGGGT+CGG | 0.536207 | 1.3:+25569572 | MS.gene063568:intron |
| AGTCATAGTTTCTTCATCGA+CGG | 0.541874 | 1.3:-25570953 | None:intergenic |
| TGTTCTGGTTGGTGAAAAGA+AGG | 0.542861 | 1.3:+25566007 | MS.gene063568:CDS |
| GTGACCAGATTGACTCGAAT+GGG | 0.542975 | 1.3:-25567079 | None:intergenic |
| AGGGAAAATGTCGAAAGAGT+TGG | 0.545065 | 1.3:+25571371 | MS.gene063568:CDS |
| AAACTGTCAGTGGTGAAGAA+TGG | 0.548883 | 1.3:-25575588 | None:intergenic |
| TCGCACATCAATAGTATCAC+AGG | 0.550865 | 1.3:-25573110 | None:intergenic |
| TGGATGAACATCATACTTTG+AGG | 0.551930 | 1.3:+25576092 | MS.gene063568:CDS |
| AGTTTCTTCATCGACGGAGA+AGG | 0.554848 | 1.3:-25570947 | None:intergenic |
| AAGAAGAAGAACAACAAGAT+GGG | 0.558181 | 1.3:+25567008 | MS.gene063568:CDS |
| TCTGGCCGTGATATTGCCGT+TGG | 0.558685 | 1.3:+25573158 | MS.gene063568:CDS |
| TCTCTCTCTGGTGATGACCT+TGG | 0.559106 | 1.3:+25570919 | MS.gene063568:CDS |
| GTGTCGTTCATCATTTCTTG+GGG | 0.559863 | 1.3:-25566087 | None:intergenic |
| TGAGTCTTCAGCCTATCTGA+AGG | 0.560854 | 1.3:-25570412 | None:intergenic |
| TAAAACCAAGAAGGAAGTGA+TGG | 0.562453 | 1.3:+25569904 | MS.gene063568:CDS |
| AGACACAGTGTCTTTGAAGA+AGG | 0.562914 | 1.3:-25573029 | None:intergenic |
| ATGGAGGCTAATGGAAATGC+TGG | 0.565048 | 1.3:+25565951 | MS.gene063568:CDS |
| AAATCCGATTGGAATGAATC+GGG | 0.565568 | 1.3:+25566309 | MS.gene063568:CDS |
| TCTCGAGAGAAGAGATGAAG+AGG | 0.567993 | 1.3:+25570999 | MS.gene063568:CDS |
| CCAAATGGAGTATGCAATGG+AGG | 0.570934 | 1.3:+25565935 | MS.gene063568:CDS |
| CCTGCTGGAAGGATTAGATA+AGG | 0.573153 | 1.3:+25570085 | MS.gene063568:CDS |
| ACCATTGATAGAGATGAGTA+CGG | 0.573361 | 1.3:+25572795 | MS.gene063568:CDS |
| GCTCGTAGTATGCAGAGTCC+AGG | 0.573666 | 1.3:+25569604 | MS.gene063568:CDS |
| CTCAAAACCAAACCCAACAA+TGG | 0.573761 | 1.3:+25566917 | MS.gene063568:CDS |
| TCCAAACGCAGCATCGCCAA+TGG | 0.573826 | 1.3:+25566948 | MS.gene063568:CDS |
| CGTGACCAGATTGACTCGAA+TGG | 0.575204 | 1.3:-25567080 | None:intergenic |
| GAAGACGATGATACCAGTGC+TGG | 0.576087 | 1.3:+25571189 | MS.gene063568:CDS |
| GTTCTCTTGCTATTGAGAAG+AGG | 0.577774 | 1.3:+25567165 | MS.gene063568:CDS |
| GATGATGATGATATCAGTGC+AGG | 0.578213 | 1.3:+25571156 | MS.gene063568:CDS |
| AGATACCAAACGAATGGGGT+TGG | 0.579161 | 1.3:+25567139 | MS.gene063568:CDS |
| GGTGAGGCGCGAAGCTAAAG+GGG | 0.580163 | 1.3:+25576364 | MS.gene063568:CDS |
| AAAGATGGGGTTGTTCTGGT+TGG | 0.580246 | 1.3:+25565996 | MS.gene063568:CDS |
| GAAAGGAGATACCAAACGAA+TGG | 0.581321 | 1.3:+25567133 | MS.gene063568:CDS |
| GCCAAGAAGATAGTCATTGG+AGG | 0.581374 | 1.3:+25571351 | MS.gene063568:CDS |
| TCAGGAAGAGATTGATCAGG+AGG | 0.581593 | 1.3:+25570432 | MS.gene063568:CDS |
| ACGGGATAAAATTAAAGATG+TGG | 0.582762 | 1.3:+25576048 | MS.gene063568:CDS |
| TTCACTCGAATCTTCAGCAG+CGG | 0.584454 | 1.3:-25570851 | None:intergenic |
| TAGTGAACATAATTCTTCAA+AGG | 0.586872 | 1.3:-25571424 | None:intergenic |
| GAAGCTAGCGTAGCCGACGG+TGG | 0.588664 | 1.3:+25569628 | MS.gene063568:CDS |
| TTACCAAATGGAGTATGCAA+TGG | 0.591393 | 1.3:+25565932 | MS.gene063568:CDS |
| CAAGAGCCGAGAAGTATGGA+AGG | 0.592553 | 1.3:+25576462 | MS.gene063568:CDS |
| CCAAGAAGATAGTCATTGGA+GGG | 0.596888 | 1.3:+25571352 | MS.gene063568:CDS |
| CCTTATCTAATCCTTCCAGC+AGG | 0.597560 | 1.3:-25570085 | None:intergenic |
| CGAGAGAAGAGATGAAGAGG+AGG | 0.598120 | 1.3:+25571002 | MS.gene063568:CDS |
| ACAACAATCTTCTCTCCTGA+AGG | 0.598896 | 1.3:+25565903 | MS.gene063568:CDS |
| ATCGGAACATGGAAATACCA+TGG | 0.602060 | 1.3:-25573066 | None:intergenic |
| CTATCACAGAAAGTAGCAGT+TGG | 0.602687 | 1.3:+25573006 | MS.gene063568:intron |
| TCTATTGCGATTGTGGTCCA+TGG | 0.603912 | 1.3:+25573049 | MS.gene063568:CDS |
| TGGTTGTTTGAGTGATACGA+GGG | 0.604013 | 1.3:-25566109 | None:intergenic |
| CGAAATCTTGTCAAAAGATG+GGG | 0.608982 | 1.3:+25565983 | MS.gene063568:CDS |
| GGAGGAAAGAGAACATCTAG+AGG | 0.609657 | 1.3:+25570450 | MS.gene063568:CDS |
| AAGAACCAACGGCAATATCA+CGG | 0.614085 | 1.3:-25573163 | None:intergenic |
| ACAGAGACATAAAACCAAGA+AGG | 0.615445 | 1.3:+25569895 | MS.gene063568:intron |
| TCCTTGTAGGGTTTCAACAG+CGG | 0.615747 | 1.3:-25575921 | None:intergenic |
| AAAGATGAAGACCTGCTGGA+AGG | 0.616144 | 1.3:+25570074 | MS.gene063568:CDS |
| ACCGCTGTTGAAACCCTACA+AGG | 0.620068 | 1.3:+25575920 | MS.gene063568:CDS |
| AGCTAGCGTAGCCGACGGTG+GGG | 0.620173 | 1.3:+25569630 | MS.gene063568:CDS |
| CCAGATTGACTCGAATGGGT+TGG | 0.624693 | 1.3:-25567075 | None:intergenic |
| AGGAATTGATGGTCTTGGAA+GGG | 0.625979 | 1.3:+25569117 | MS.gene063568:CDS |
| TGCGTGCTCGCCCTTCAGAT+AGG | 0.627560 | 1.3:+25570401 | MS.gene063568:CDS |
| TGGTTCAGTCAGAGCCAACA+AGG | 0.630538 | 1.3:-25570135 | None:intergenic |
| TCGAAGTAATGGGTCAGAAG+CGG | 0.631084 | 1.3:+25567111 | MS.gene063568:CDS |
| GGCGAAGCTAGCGTAGCCGA+CGG | 0.632316 | 1.3:+25569625 | MS.gene063568:CDS |
| GAGTCTTCAGCCTATCTGAA+GGG | 0.632652 | 1.3:-25570411 | None:intergenic |
| TGGTTCAGAAGACGAAGATG+AGG | 0.638131 | 1.3:+25571209 | MS.gene063568:CDS |
| GGATGTCTAAAATCGGAACA+TGG | 0.639818 | 1.3:-25573077 | None:intergenic |
| TCTTCTAGTGAAGATGATGA+TGG | 0.645377 | 1.3:+25571027 | MS.gene063568:CDS |
| TGAGCTGATTAAGTTGAAAG+TGG | 0.649315 | 1.3:+25576072 | MS.gene063568:CDS |
| TGAGGCGACCACTTCAAATG+CGG | 0.651913 | 1.3:+25576110 | MS.gene063568:CDS |
| GTAATGGGTCAGAAGCGGAA+AGG | 0.654267 | 1.3:+25567116 | MS.gene063568:CDS |
| TGAGGATGAAGAAAGAGCTG+CGG | 0.655855 | 1.3:+25571227 | MS.gene063568:CDS |
| AGAACATAAGAAAGAACCAA+CGG | 0.656060 | 1.3:-25573174 | None:intergenic |
| TTGGTTGTTTGAGTGATACG+AGG | 0.656391 | 1.3:-25566110 | None:intergenic |
| AAGATGATGATGATTTGGAA+AGG | 0.659962 | 1.3:+25571052 | MS.gene063568:CDS |
| TCGAGTCAATCTGGTCACGT+AGG | 0.664541 | 1.3:+25567084 | MS.gene063568:CDS |
| AGATTCTGATGATGGATCAG+AGG | 0.668735 | 1.3:+25571080 | MS.gene063568:CDS |
| GAATCGGTGAGAATGATGAA+GGG | 0.669136 | 1.3:+25567249 | MS.gene063568:CDS |
| CGACGGAGAAGGAATCGCCA+AGG | 0.679772 | 1.3:-25570936 | None:intergenic |
| TGTTGTATTTGATGAGACAA+CGG | 0.691487 | 1.3:-25566148 | None:intergenic |
| AAGGAGATACCAAACGAATG+GGG | 0.713699 | 1.3:+25567135 | MS.gene063568:CDS |
| GGTTTACCTGAAACTGTCAG+TGG | 0.726495 | 1.3:-25575598 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 25565879 | 25576562 | 25565879 | ID=MS.gene063568 |
| chr1.3 | mRNA | 25565879 | 25576562 | 25565879 | ID=MS.gene063568.t1;Parent=MS.gene063568 |
| chr1.3 | exon | 25565879 | 25566191 | 25565879 | ID=MS.gene063568.t1.exon1;Parent=MS.gene063568.t1 |
| chr1.3 | CDS | 25565879 | 25566191 | 25565879 | ID=cds.MS.gene063568.t1;Parent=MS.gene063568.t1 |
| chr1.3 | exon | 25566281 | 25566330 | 25566281 | ID=MS.gene063568.t1.exon2;Parent=MS.gene063568.t1 |
| chr1.3 | CDS | 25566281 | 25566330 | 25566281 | ID=cds.MS.gene063568.t1;Parent=MS.gene063568.t1 |
| chr1.3 | exon | 25566906 | 25567319 | 25566906 | ID=MS.gene063568.t1.exon3;Parent=MS.gene063568.t1 |
| chr1.3 | CDS | 25566906 | 25567319 | 25566906 | ID=cds.MS.gene063568.t1;Parent=MS.gene063568.t1 |
| chr1.3 | exon | 25569052 | 25569187 | 25569052 | ID=MS.gene063568.t1.exon4;Parent=MS.gene063568.t1 |
| chr1.3 | CDS | 25569052 | 25569187 | 25569052 | ID=cds.MS.gene063568.t1;Parent=MS.gene063568.t1 |
| chr1.3 | exon | 25569575 | 25569657 | 25569575 | ID=MS.gene063568.t1.exon5;Parent=MS.gene063568.t1 |
| chr1.3 | CDS | 25569575 | 25569657 | 25569575 | ID=cds.MS.gene063568.t1;Parent=MS.gene063568.t1 |
| chr1.3 | exon | 25569899 | 25569958 | 25569899 | ID=MS.gene063568.t1.exon6;Parent=MS.gene063568.t1 |
| chr1.3 | CDS | 25569899 | 25569958 | 25569899 | ID=cds.MS.gene063568.t1;Parent=MS.gene063568.t1 |
| chr1.3 | exon | 25570050 | 25570262 | 25570050 | ID=MS.gene063568.t1.exon7;Parent=MS.gene063568.t1 |
| chr1.3 | CDS | 25570050 | 25570262 | 25570050 | ID=cds.MS.gene063568.t1;Parent=MS.gene063568.t1 |
| chr1.3 | exon | 25570352 | 25570480 | 25570352 | ID=MS.gene063568.t1.exon8;Parent=MS.gene063568.t1 |
| chr1.3 | CDS | 25570352 | 25570480 | 25570352 | ID=cds.MS.gene063568.t1;Parent=MS.gene063568.t1 |
| chr1.3 | exon | 25570829 | 25571545 | 25570829 | ID=MS.gene063568.t1.exon9;Parent=MS.gene063568.t1 |
| chr1.3 | CDS | 25570829 | 25571545 | 25570829 | ID=cds.MS.gene063568.t1;Parent=MS.gene063568.t1 |
| chr1.3 | exon | 25572709 | 25572901 | 25572709 | ID=MS.gene063568.t1.exon10;Parent=MS.gene063568.t1 |
| chr1.3 | CDS | 25572709 | 25572901 | 25572709 | ID=cds.MS.gene063568.t1;Parent=MS.gene063568.t1 |
| chr1.3 | exon | 25573015 | 25573208 | 25573015 | ID=MS.gene063568.t1.exon11;Parent=MS.gene063568.t1 |
| chr1.3 | CDS | 25573015 | 25573208 | 25573015 | ID=cds.MS.gene063568.t1;Parent=MS.gene063568.t1 |
| chr1.3 | exon | 25574105 | 25574209 | 25574105 | ID=MS.gene063568.t1.exon12;Parent=MS.gene063568.t1 |
| chr1.3 | CDS | 25574105 | 25574209 | 25574105 | ID=cds.MS.gene063568.t1;Parent=MS.gene063568.t1 |
| chr1.3 | exon | 25575474 | 25575613 | 25575474 | ID=MS.gene063568.t1.exon13;Parent=MS.gene063568.t1 |
| chr1.3 | CDS | 25575474 | 25575613 | 25575474 | ID=cds.MS.gene063568.t1;Parent=MS.gene063568.t1 |
| chr1.3 | exon | 25575904 | 25576182 | 25575904 | ID=MS.gene063568.t1.exon14;Parent=MS.gene063568.t1 |
| chr1.3 | CDS | 25575904 | 25576182 | 25575904 | ID=cds.MS.gene063568.t1;Parent=MS.gene063568.t1 |
| chr1.3 | exon | 25576298 | 25576562 | 25576298 | ID=MS.gene063568.t1.exon15;Parent=MS.gene063568.t1 |
| chr1.3 | CDS | 25576298 | 25576562 | 25576298 | ID=cds.MS.gene063568.t1;Parent=MS.gene063568.t1 |
| Gene Sequence |
| Protein sequence |