AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47800.t1 MTR_2g101620 96.937 555 17 0 1 555 1 555 0.0 1114
MS.gene47800.t1 MTR_2g009800 90.631 555 52 0 1 555 1 555 0.0 1045
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47800.t1 AT5G14050 62.014 566 184 10 1 555 1 546 0.0 671

Find 126 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGAAGATGCTTTGAATTT+TGG 0.136326 2.1:+3524671 None:intergenic
CTCTACTCCCCTCTTGAATT+TGG 0.174548 2.1:-3525329 MS.gene47800:CDS
TACAATAGTGAGGAATTTAT+TGG 0.250482 2.1:-3524177 MS.gene47800:CDS
ATGGAACTGAACCGAATTAA+TGG 0.250496 2.1:+3524770 None:intergenic
TGAAATCCACTTCAGTATTC+AGG 0.253259 2.1:+3524121 None:intergenic
TAGCCAAAGTTAACAGATTA+AGG 0.262384 2.1:-3525109 MS.gene47800:CDS
GACTGGGCACAGCTTGATTC+AGG 0.267674 2.1:-3524993 MS.gene47800:CDS
CTTAACGTCATCCTCTCTTT+TGG 0.282888 2.1:+3525493 None:intergenic
AAGGCTAGAGTTGATAAAAT+TGG 0.310494 2.1:-3524552 MS.gene47800:CDS
TTAACAGATTAAGGAAGTTA+AGG 0.316539 2.1:-3525100 MS.gene47800:CDS
TCCCCTCTTGAATTTGGAAA+TGG 0.323398 2.1:-3525323 MS.gene47800:CDS
ACAATAGTGAGGAATTTATT+GGG 0.335670 2.1:-3524176 MS.gene47800:CDS
CCGAGAAGTCGGAATCTTCT+TGG 0.338975 2.1:+3525210 None:intergenic
AAATTGGTCCGCTGTTGTAT+AGG 0.350963 2.1:-3524536 MS.gene47800:CDS
CTTTGCGAAGAAAGCCGGTT+TGG 0.353761 2.1:-3525166 MS.gene47800:CDS
TTCTAATGGTCCCATTAATT+CGG 0.354772 2.1:-3524781 MS.gene47800:CDS
AGGTTATCAATGGTCTTGAT+AGG 0.358287 2.1:+3524141 None:intergenic
CCAAGAAGATTCCGACTTCT+CGG 0.363915 2.1:-3525210 MS.gene47800:CDS
GGTCAGCTGCTTCTTGCTGC+TGG 0.365476 2.1:-3524741 MS.gene47800:CDS
ACTTGTAGATGCAAACATTC+AGG 0.369324 2.1:-3524808 MS.gene47800:CDS
AATTGGTCCGCTGTTGTATA+GGG 0.377936 2.1:-3524535 MS.gene47800:CDS
TTTGAAAGAATCTAAGATTC+CGG 0.381602 2.1:+3524712 None:intergenic
GGGTCTCAAGTGATAATATC+TGG 0.385058 2.1:-3524609 MS.gene47800:CDS
CCCCTCTTGAATTTGGAAAT+GGG 0.395309 2.1:-3525322 MS.gene47800:CDS
TGGACTAAAATCAATACAAC+GGG 0.404884 2.1:+3523966 None:intergenic
CTTCCTTAATCTGTTAACTT+TGG 0.410710 2.1:+3525106 None:intergenic
TTTGCGAAGAAAGCCGGTTT+GGG 0.414670 2.1:-3525165 MS.gene47800:CDS
AGATGGAAAGGAAGAACATT+TGG 0.415307 2.1:-3525405 MS.gene47800:CDS
ATGGCTGTAGGAAACGCTTC+AGG 0.416776 2.1:-3523931 MS.gene47800:CDS
GAGGACGAGAATGTGATATC+TGG 0.419714 2.1:-3525071 MS.gene47800:CDS
TTATAGTCTTGATTTAGTTA+AGG 0.420893 2.1:-3524571 MS.gene47800:CDS
TTCGAATGGGGCAATCTTCA+AGG 0.424695 2.1:+3524652 None:intergenic
ACAAAATCAAAGCAATTAGT+TGG 0.426886 2.1:-3524423 MS.gene47800:CDS
CAAAAGAGAGGATGACGTTA+AGG 0.431319 2.1:-3525492 MS.gene47800:CDS
TGGAACTGAACCGAATTAAT+GGG 0.436701 2.1:+3524771 None:intergenic
GAATTAATGGGACCATTAGA+AGG 0.443632 2.1:+3524783 None:intergenic
TCGGTTCAGTTCCATCGAAA+TGG 0.445521 2.1:-3524762 MS.gene47800:CDS
TTCAGTATTCAGGTTATCAA+TGG 0.445525 2.1:+3524131 None:intergenic
AAGTAATGTTGTTGCAAGCC+GGG 0.446747 2.1:-3524925 MS.gene47800:CDS
AACATTCAGGATCCTTCTAA+TGG 0.448781 2.1:-3524795 MS.gene47800:CDS
TTCTAAAATGATAGCCTTTG+TGG 0.449352 2.1:-3524475 MS.gene47800:CDS
AAATATTAGCAATCTGTTCA+AGG 0.450551 2.1:-3524077 MS.gene47800:CDS
TCTTCCTCATCCACCCAAAC+CGG 0.450796 2.1:+3525152 None:intergenic
TTTGCAGCTGGTTCGGCTAG+TGG 0.463183 2.1:-3524213 MS.gene47800:CDS
CTTAGATTCTTTCAAATCGA+TGG 0.465769 2.1:-3524705 MS.gene47800:CDS
GTAGATGAAGGCTGTTTAAA+CGG 0.466326 2.1:-3524270 MS.gene47800:CDS
GCTGCAAAATGTGTCCCTAC+TGG 0.467974 2.1:+3524228 None:intergenic
CAGATTAAGGAAGTTAAGGA+AGG 0.470846 2.1:-3525096 MS.gene47800:CDS
ACTGACCGTTCTGCTGATAG+TGG 0.477341 2.1:-3525245 MS.gene47800:CDS
AAGCATCTTTCTTGCCCGAT+GGG 0.479466 2.1:-3524629 MS.gene47800:CDS
GATGATGAATTGACAGATGA+TGG 0.480610 2.1:-3524948 MS.gene47800:CDS
AGCTCAACCGAGGAACTGAC+TGG 0.481203 2.1:-3525010 MS.gene47800:CDS
GTGATGGCCATGTTTACCAT+TGG 0.483908 2.1:-3524326 MS.gene47800:CDS
GGAAATGGGGATAACGATGA+AGG 0.486981 2.1:-3525308 MS.gene47800:CDS
GAAGTAATGTTGTTGCAAGC+CGG 0.488853 2.1:-3524926 MS.gene47800:CDS
TGTTGCAAGCCGGGGTTATG+AGG 0.491992 2.1:-3524916 MS.gene47800:CDS
CAGAGTATGTGTCAAGATTG+AGG 0.492768 2.1:-3525046 MS.gene47800:CDS
ACGGTCAGTGAAGAACAAAT+TGG 0.494840 2.1:+3525259 None:intergenic
TGATGGCCATGTTTACCATT+GGG 0.497623 2.1:-3524325 MS.gene47800:CDS
TCTTTCAAATCGATGGCAAA+CGG 0.500797 2.1:-3524698 MS.gene47800:CDS
AAGGAAGTTAAGGAAGGAAG+AGG 0.502686 2.1:-3525090 MS.gene47800:CDS
AAAGAGGAAGCTAGATGGAA+AGG 0.505950 2.1:-3525417 MS.gene47800:CDS
GGAAGCCTTTGCAGCAGTCA+TGG 0.506331 2.1:+3525280 None:intergenic
AGAGTATGTGTCAAGATTGA+GGG 0.513752 2.1:-3525045 MS.gene47800:CDS
TGATGCTTTGCGAAGAAAGC+CGG 0.516338 2.1:-3525171 MS.gene47800:CDS
ATAGCCTTTGTGGGTGATGA+AGG 0.525756 2.1:-3524465 MS.gene47800:CDS
CAATAGTGAGGAATTTATTG+GGG 0.526195 2.1:-3524175 MS.gene47800:CDS
CCCTACTGGAGAAGTACAAA+GGG 0.526256 2.1:+3524242 None:intergenic
AGCAGCTCAAAATTGTTGCC+AGG 0.528190 2.1:-3524849 MS.gene47800:CDS
AAGCCGGGGTTATGAGGATC+TGG 0.531707 2.1:-3524910 MS.gene47800:CDS
AAAGCCGGTTTGGGTGGATG+AGG 0.539602 2.1:-3525156 MS.gene47800:CDS
TTTCTAATCTACTTTAGGCA+TGG 0.540589 2.1:+3523875 None:intergenic
TCTCAGAACAAATGAAGACT+TGG 0.543934 2.1:-3524880 MS.gene47800:CDS
CCCTCTTGAATTTGGAAATG+GGG 0.544010 2.1:-3525321 MS.gene47800:CDS
ACTGGGCACAGCTTGATTCA+GGG 0.545660 2.1:-3524992 MS.gene47800:CDS
GGAAGCCATGACTGCTGCAA+AGG 0.547123 2.1:-3525285 MS.gene47800:CDS
CCCCATTTCCAAATTCAAGA+GGG 0.548968 2.1:+3525321 None:intergenic
GTAAACATGGCCATCACCAC+CGG 0.549474 2.1:+3524332 None:intergenic
CAATACAACGGGGATAATGC+AGG 0.553209 2.1:+3523977 None:intergenic
TTCTTGCTGCTGGATTAGAC+CGG 0.554524 2.1:-3524731 MS.gene47800:CDS
TGTGAATATTTACAATAGTG+AGG 0.554925 2.1:-3524187 MS.gene47800:CDS
AAAGCATCTTTCTTGCCCGA+TGG 0.557386 2.1:-3524630 MS.gene47800:CDS
GAAGATTCCGACTTCTCGGA+TGG 0.562358 2.1:-3525206 MS.gene47800:CDS
TTGTTGAGCACCGGTGGTGA+TGG 0.564654 2.1:-3524342 MS.gene47800:CDS
TCTAAAATGATAGCCTTTGT+GGG 0.566464 2.1:-3524474 MS.gene47800:CDS
CCCTTTGTACTTCTCCAGTA+GGG 0.569388 2.1:-3524242 MS.gene47800:CDS
GCGAAGAAAGCCGGTTTGGG+TGG 0.571477 2.1:-3525162 MS.gene47800:CDS
GCCCTTTGTACTTCTCCAGT+AGG 0.573251 2.1:-3524243 MS.gene47800:CDS
TGATAACCTGAATACTGAAG+TGG 0.580415 2.1:-3524127 MS.gene47800:CDS
GGACAAAAGTTGTTGAGCAC+CGG 0.580640 2.1:-3524351 MS.gene47800:CDS
ATTATCACTTGAGACCCATC+GGG 0.584332 2.1:+3524615 None:intergenic
TATTATCACTTGAGACCCAT+CGG 0.587218 2.1:+3524614 None:intergenic
GCTGTGCCCAGTCAGTTCCT+CGG 0.588930 2.1:+3525003 None:intergenic
GAAATGGGGATAACGATGAA+GGG 0.589801 2.1:-3525307 MS.gene47800:CDS
CTTCAGTAAAAGCTAACGCA+CGG 0.597212 2.1:+3524376 None:intergenic
AGTAATGTTGTTGCAAGCCG+GGG 0.599593 2.1:-3524924 MS.gene47800:CDS
GAAGCAGCTGACCATTTCGA+TGG 0.604108 2.1:+3524751 None:intergenic
TCCCCATTTCCAAATTCAAG+AGG 0.605102 2.1:+3525320 None:intergenic
ACAACTTCCATCCGAGAAGT+CGG 0.605132 2.1:+3525199 None:intergenic
TCAGATCCCAATGGTAAACA+TGG 0.606421 2.1:+3524319 None:intergenic
TTCGAGTATTCAATATGACC+TGG 0.611892 2.1:+3524831 None:intergenic
TTCAGTAAAAGCTAACGCAC+GGG 0.612384 2.1:+3524377 None:intergenic
TCCCTACTGGAGAAGTACAA+AGG 0.621550 2.1:+3524241 None:intergenic
CTGGACTAAAATCAATACAA+CGG 0.621707 2.1:+3523965 None:intergenic
ACCATTGGGATCTGAGAACA+AGG 0.624102 2.1:-3524311 MS.gene47800:CDS
CCCATTTCCAAATTCAAGAG+GGG 0.625050 2.1:+3525322 None:intergenic
TAGAAATGAGACCAAAAGAG+AGG 0.629102 2.1:-3525504 MS.gene47800:CDS
GCTCAACCGAGGAACTGACT+GGG 0.636934 2.1:-3525009 MS.gene47800:CDS
CCAGTTAGAGAAAACAGTGT+AGG 0.639938 2.1:+3524017 None:intergenic
GTTGGTACTCTGAAGATGAA+CGG 0.640176 2.1:-3524405 MS.gene47800:CDS
TTAGAGAAAACAGTGTAGGA+TGG 0.640295 2.1:+3524021 None:intergenic
CATCCAGATCCTCATAACCC+CGG 0.640892 2.1:+3524907 None:intergenic
AATAGTGAGGAATTTATTGG+GGG 0.641952 2.1:-3524174 MS.gene47800:CDS
TGCAGGCTCGCATTTGAACG+CGG 0.645712 2.1:+3523994 None:intergenic
ACAGCCATAAAACCACCACC+TGG 0.646807 2.1:+3523946 None:intergenic
ATAACCTTCATCACCCACAA+AGG 0.647464 2.1:+3524461 None:intergenic
AAATGGGGATAACGATGAAG+GGG 0.648646 2.1:-3525306 MS.gene47800:CDS
CAAAAGTTGTTGAGCACCGG+TGG 0.649375 2.1:-3524348 MS.gene47800:CDS
ATGCACAAAGGTGTAGATGA+AGG 0.661644 2.1:-3524282 MS.gene47800:CDS
TTCTCTTCCCTATACAACAG+CGG 0.666954 2.1:+3524528 None:intergenic
TGAGGCCACTATCAGCAGAA+CGG 0.695939 2.1:+3525240 None:intergenic
AATCTTCTTGGTAAACAGTG+AGG 0.698018 2.1:+3525222 None:intergenic
CAACATGTGAAGCTCAACCG+AGG 0.705882 2.1:-3525020 MS.gene47800:CDS
ACAAGGACTTGTATGCACAA+AGG 0.714733 2.1:-3524294 MS.gene47800:CDS
TCCTTGTTCTCAGATCCCAA+TGG 0.719029 2.1:+3524310 None:intergenic
GGACTAAAATCAATACAACG+GGG 0.796660 2.1:+3523967 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAGTCTTGATTTAGTTA+AGG - chr2.1:3524850-3524869 MS.gene47800:CDS 20.0%
! AAATATTAGCAATCTGTTCA+AGG - chr2.1:3525344-3525363 MS.gene47800:CDS 25.0%
! ACAAAATCAAAGCAATTAGT+TGG - chr2.1:3524998-3525017 MS.gene47800:CDS 25.0%
! ACAATAGTGAGGAATTTATT+GGG - chr2.1:3525245-3525264 MS.gene47800:CDS 25.0%
! TACAATAGTGAGGAATTTAT+TGG - chr2.1:3525244-3525263 MS.gene47800:CDS 25.0%
! TGTGAATATTTACAATAGTG+AGG - chr2.1:3525234-3525253 MS.gene47800:CDS 25.0%
! TTAACAGATTAAGGAAGTTA+AGG - chr2.1:3524321-3524340 MS.gene47800:CDS 25.0%
!! AAACTTGAAAGCTTTTTGTT+TGG - chr2.1:3524065-3524084 MS.gene47800:CDS 25.0%
!! TGATGAAGGTTATATTTTAC+TGG - chr2.1:3524970-3524989 MS.gene47800:CDS 25.0%
!! TTTGAAAGAATCTAAGATTC+CGG + chr2.1:3524712-3524731 None:intergenic 25.0%
!!! AACTTGAAAGCTTTTTGTTT+GGG - chr2.1:3524066-3524085 MS.gene47800:CDS 25.0%
AAGGAAAAAGAAGTTGAAGA+TGG - chr2.1:3523948-3523967 MS.gene47800:CDS 30.0%
AATAGTGAGGAATTTATTGG+GGG - chr2.1:3525247-3525266 MS.gene47800:CDS 30.0%
CAATAGTGAGGAATTTATTG+GGG - chr2.1:3525246-3525265 MS.gene47800:CDS 30.0%
CTGGACTAAAATCAATACAA+CGG + chr2.1:3525459-3525478 None:intergenic 30.0%
CTTAGATTCTTTCAAATCGA+TGG - chr2.1:3524716-3524735 MS.gene47800:CDS 30.0%
CTTCCTTAATCTGTTAACTT+TGG + chr2.1:3524318-3524337 None:intergenic 30.0%
TAGCCAAAGTTAACAGATTA+AGG - chr2.1:3524312-3524331 MS.gene47800:CDS 30.0%
TGGACTAAAATCAATACAAC+GGG + chr2.1:3525458-3525477 None:intergenic 30.0%
TTCTAATGGTCCCATTAATT+CGG - chr2.1:3524640-3524659 MS.gene47800:CDS 30.0%
! AAGAAAGATGCTTTTCGAAT+GGG + chr2.1:3524785-3524804 None:intergenic 30.0%
! TCTAAAATGATAGCCTTTGT+GGG - chr2.1:3524947-3524966 MS.gene47800:CDS 30.0%
! TTCAGTATTCAGGTTATCAA+TGG + chr2.1:3525293-3525312 None:intergenic 30.0%
!! AAGGAAGATGCTTTGAATTT+TGG + chr2.1:3524753-3524772 None:intergenic 30.0%
!! AAGGCTAGAGTTGATAAAAT+TGG - chr2.1:3524869-3524888 MS.gene47800:CDS 30.0%
!! TTCTAAAATGATAGCCTTTG+TGG - chr2.1:3524946-3524965 MS.gene47800:CDS 30.0%
!!! AAGGCTATCATTTTAGAATC+AGG + chr2.1:3524944-3524963 None:intergenic 30.0%
!!! GAAGAGTATTGAAGTTTTTG+AGG - chr2.1:3524913-3524932 MS.gene47800:CDS 30.0%
AACATTCAGGATCCTTCTAA+TGG - chr2.1:3524626-3524645 MS.gene47800:CDS 35.0%
AATCTTCTTGGTAAACAGTG+AGG + chr2.1:3524202-3524221 None:intergenic 35.0%
ACTTGTAGATGCAAACATTC+AGG - chr2.1:3524613-3524632 MS.gene47800:CDS 35.0%
AGAGTATGTGTCAAGATTGA+GGG - chr2.1:3524376-3524395 MS.gene47800:CDS 35.0%
AGATGGAAAGGAAGAACATT+TGG - chr2.1:3524016-3524035 MS.gene47800:CDS 35.0%
ATACCGTAGAAGTGAAAAAG+AGG - chr2.1:3523988-3524007 MS.gene47800:CDS 35.0%
ATGGAACTGAACCGAATTAA+TGG + chr2.1:3524654-3524673 None:intergenic 35.0%
CAGATTAAGGAAGTTAAGGA+AGG - chr2.1:3524325-3524344 MS.gene47800:CDS 35.0%
GAATTAATGGGACCATTAGA+AGG + chr2.1:3524641-3524660 None:intergenic 35.0%
GATGATGAATTGACAGATGA+TGG - chr2.1:3524473-3524492 MS.gene47800:CDS 35.0%
GGACTAAAATCAATACAACG+GGG + chr2.1:3525457-3525476 None:intergenic 35.0%
GTAGATGAAGGCTGTTTAAA+CGG - chr2.1:3525151-3525170 MS.gene47800:CDS 35.0%
TAGAAATGAGACCAAAAGAG+AGG - chr2.1:3523917-3523936 MS.gene47800:CDS 35.0%
TATTATCACTTGAGACCCAT+CGG + chr2.1:3524810-3524829 None:intergenic 35.0%
TCTCAGAACAAATGAAGACT+TGG - chr2.1:3524541-3524560 MS.gene47800:CDS 35.0%
TCTTTCAAATCGATGGCAAA+CGG - chr2.1:3524723-3524742 MS.gene47800:CDS 35.0%
TGAAATCCACTTCAGTATTC+AGG + chr2.1:3525303-3525322 None:intergenic 35.0%
TGATAACCTGAATACTGAAG+TGG - chr2.1:3525294-3525313 MS.gene47800:CDS 35.0%
TGGAACTGAACCGAATTAAT+GGG + chr2.1:3524653-3524672 None:intergenic 35.0%
TTAGAGAAAACAGTGTAGGA+TGG + chr2.1:3525403-3525422 None:intergenic 35.0%
TTCGAGTATTCAATATGACC+TGG + chr2.1:3524593-3524612 None:intergenic 35.0%
! AGAAAGATGCTTTTCGAATG+GGG + chr2.1:3524784-3524803 None:intergenic 35.0%
! AGGTTATCAATGGTCTTGAT+AGG + chr2.1:3525283-3525302 None:intergenic 35.0%
! CAAGAAAGATGCTTTTCGAA+TGG + chr2.1:3524786-3524805 None:intergenic 35.0%
!! CTTCCTCTTTTTCACTTCTA+CGG + chr2.1:3523994-3524013 None:intergenic 35.0%
!!! CGTTGTATTGATTTTAGTCC+AGG - chr2.1:3525457-3525476 MS.gene47800:CDS 35.0%
!!! TGTATTGATTTTAGTCCAGG+TGG - chr2.1:3525460-3525479 MS.gene47800:CDS 35.0%
AAAGAGGAAGCTAGATGGAA+AGG - chr2.1:3524004-3524023 MS.gene47800:CDS 40.0%
AAATGGGGATAACGATGAAG+GGG - chr2.1:3524115-3524134 MS.gene47800:CDS 40.0%
AAATTGGTCCGCTGTTGTAT+AGG - chr2.1:3524885-3524904 MS.gene47800:CDS 40.0%
AAGGAAGTTAAGGAAGGAAG+AGG - chr2.1:3524331-3524350 MS.gene47800:CDS 40.0%
AAGTAATGTTGTTGCAAGCC+GGG - chr2.1:3524496-3524515 MS.gene47800:CDS 40.0%
AATTGGTCCGCTGTTGTATA+GGG - chr2.1:3524886-3524905 MS.gene47800:CDS 40.0%
ACAAGGACTTGTATGCACAA+AGG - chr2.1:3525127-3525146 MS.gene47800:CDS 40.0%
ACGGTCAGTGAAGAACAAAT+TGG + chr2.1:3524165-3524184 None:intergenic 40.0%
ATAACCTTCATCACCCACAA+AGG + chr2.1:3524963-3524982 None:intergenic 40.0%
ATTATCACTTGAGACCCATC+GGG + chr2.1:3524809-3524828 None:intergenic 40.0%
CAAAAGAGAGGATGACGTTA+AGG - chr2.1:3523929-3523948 MS.gene47800:CDS 40.0%
CAGAGTATGTGTCAAGATTG+AGG - chr2.1:3524375-3524394 MS.gene47800:CDS 40.0%
CCAGTTAGAGAAAACAGTGT+AGG + chr2.1:3525407-3525426 None:intergenic 40.0%
CCCATTTCCAAATTCAAGAG+GGG + chr2.1:3524102-3524121 None:intergenic 40.0%
CCCCATTTCCAAATTCAAGA+GGG + chr2.1:3524103-3524122 None:intergenic 40.0%
CCCCTCTTGAATTTGGAAAT+GGG - chr2.1:3524099-3524118 MS.gene47800:CDS 40.0%
CCCTCTTGAATTTGGAAATG+GGG - chr2.1:3524100-3524119 MS.gene47800:CDS 40.0%
CTTCAGTAAAAGCTAACGCA+CGG + chr2.1:3525048-3525067 None:intergenic 40.0%
GAAATGGGGATAACGATGAA+GGG - chr2.1:3524114-3524133 MS.gene47800:CDS 40.0%
GAAGTAATGTTGTTGCAAGC+CGG - chr2.1:3524495-3524514 MS.gene47800:CDS 40.0%
GATTCAGGGTCAAAAATGGA+TGG - chr2.1:3524443-3524462 MS.gene47800:CDS 40.0%
GCTTGATTCAGGGTCAAAAA+TGG - chr2.1:3524439-3524458 MS.gene47800:CDS 40.0%
GGGTCTCAAGTGATAATATC+TGG - chr2.1:3524812-3524831 MS.gene47800:CDS 40.0%
GTGAAAAAGAGGAAGCTAGA+TGG - chr2.1:3523999-3524018 MS.gene47800:CDS 40.0%
TCAGATCCCAATGGTAAACA+TGG + chr2.1:3525105-3525124 None:intergenic 40.0%
TCCCCATTTCCAAATTCAAG+AGG + chr2.1:3524104-3524123 None:intergenic 40.0%
TCCCCTCTTGAATTTGGAAA+TGG - chr2.1:3524098-3524117 MS.gene47800:CDS 40.0%
TGATGGCCATGTTTACCATT+GGG - chr2.1:3525096-3525115 MS.gene47800:CDS 40.0%
TTCAGTAAAAGCTAACGCAC+GGG + chr2.1:3525047-3525066 None:intergenic 40.0%
TTCTCTTCCCTATACAACAG+CGG + chr2.1:3524896-3524915 None:intergenic 40.0%
! ATGCACAAAGGTGTAGATGA+AGG - chr2.1:3525139-3525158 MS.gene47800:CDS 40.0%
! CCTACACTGTTTTCTCTAAC+TGG - chr2.1:3525404-3525423 MS.gene47800:CDS 40.0%
! CTTAACGTCATCCTCTCTTT+TGG + chr2.1:3523931-3523950 None:intergenic 40.0%
! GTTGGTACTCTGAAGATGAA+CGG - chr2.1:3525016-3525035 MS.gene47800:CDS 40.0%
!! ATTGATTTTAGTCCAGGTGG+TGG - chr2.1:3525463-3525482 MS.gene47800:CDS 40.0%
!!! GCGTTAGCTTTTACTGAAGA+TGG - chr2.1:3525049-3525068 MS.gene47800:CDS 40.0%
AAGCATCTTTCTTGCCCGAT+GGG - chr2.1:3524792-3524811 MS.gene47800:CDS 45.0%
ACAACTTCCATCCGAGAAGT+CGG + chr2.1:3524225-3524244 None:intergenic 45.0%
ACCATTGGGATCTGAGAACA+AGG - chr2.1:3525110-3525129 MS.gene47800:CDS 45.0%
AGCAGCTCAAAATTGTTGCC+AGG - chr2.1:3524572-3524591 MS.gene47800:CDS 45.0%
AGTAATGTTGTTGCAAGCCG+GGG - chr2.1:3524497-3524516 MS.gene47800:CDS 45.0%
ATAGCCTTTGTGGGTGATGA+AGG - chr2.1:3524956-3524975 MS.gene47800:CDS 45.0%
CAATACAACGGGGATAATGC+AGG + chr2.1:3525447-3525466 None:intergenic 45.0%
CCAAGAAGATTCCGACTTCT+CGG - chr2.1:3524211-3524230 MS.gene47800:CDS 45.0%
CCCTTTGTACTTCTCCAGTA+GGG - chr2.1:3525179-3525198 MS.gene47800:CDS 45.0%
CTCTACTCCCCTCTTGAATT+TGG - chr2.1:3524092-3524111 MS.gene47800:CDS 45.0%
GAGGACGAGAATGTGATATC+TGG - chr2.1:3524350-3524369 MS.gene47800:CDS 45.0%
GGAAATGGGGATAACGATGA+AGG - chr2.1:3524113-3524132 MS.gene47800:CDS 45.0%
GGACAAAAGTTGTTGAGCAC+CGG - chr2.1:3525070-3525089 MS.gene47800:CDS 45.0%
GTGATGGCCATGTTTACCAT+TGG - chr2.1:3525095-3525114 MS.gene47800:CDS 45.0%
TCCTTGTTCTCAGATCCCAA+TGG + chr2.1:3525114-3525133 None:intergenic 45.0%
TCGGTTCAGTTCCATCGAAA+TGG - chr2.1:3524659-3524678 MS.gene47800:CDS 45.0%
TGATGCTTTGCGAAGAAAGC+CGG - chr2.1:3524250-3524269 MS.gene47800:CDS 45.0%
TTCGAATGGGGCAATCTTCA+AGG + chr2.1:3524772-3524791 None:intergenic 45.0%
! AAAGCATCTTTCTTGCCCGA+TGG - chr2.1:3524791-3524810 MS.gene47800:CDS 45.0%
! CCCTACTGGAGAAGTACAAA+GGG + chr2.1:3525182-3525201 None:intergenic 45.0%
! GACACATTTTGCAGCTGGTT+CGG - chr2.1:3525201-3525220 MS.gene47800:CDS 45.0%
! TCCCTACTGGAGAAGTACAA+AGG + chr2.1:3525183-3525202 None:intergenic 45.0%
! TTCTTGCTGCTGGATTAGAC+CGG - chr2.1:3524690-3524709 MS.gene47800:CDS 45.0%
! TTTGCGAAGAAAGCCGGTTT+GGG - chr2.1:3524256-3524275 MS.gene47800:CDS 45.0%
!! TAGTCCAGGTGGTGGTTTTA+TGG - chr2.1:3525471-3525490 MS.gene47800:CDS 45.0%
ACAGCCATAAAACCACCACC+TGG + chr2.1:3525478-3525497 None:intergenic 50.0%
ACTGACCGTTCTGCTGATAG+TGG - chr2.1:3524176-3524195 MS.gene47800:CDS 50.0%
ACTGGGCACAGCTTGATTCA+GGG - chr2.1:3524429-3524448 MS.gene47800:CDS 50.0%
ATGGCTGTAGGAAACGCTTC+AGG - chr2.1:3525490-3525509 MS.gene47800:CDS 50.0%
CAACATGTGAAGCTCAACCG+AGG - chr2.1:3524401-3524420 MS.gene47800:CDS 50.0%
CATCCAGATCCTCATAACCC+CGG + chr2.1:3524517-3524536 None:intergenic 50.0%
CCGAGAAGTCGGAATCTTCT+TGG + chr2.1:3524214-3524233 None:intergenic 50.0%
CTTTGCGAAGAAAGCCGGTT+TGG - chr2.1:3524255-3524274 MS.gene47800:CDS 50.0%
GAAGATTCCGACTTCTCGGA+TGG - chr2.1:3524215-3524234 MS.gene47800:CDS 50.0%
GAAGCAGCTGACCATTTCGA+TGG + chr2.1:3524673-3524692 None:intergenic 50.0%
GCCCTTTGTACTTCTCCAGT+AGG - chr2.1:3525178-3525197 MS.gene47800:CDS 50.0%
GCTGCAAAATGTGTCCCTAC+TGG + chr2.1:3525196-3525215 None:intergenic 50.0%
GTAAACATGGCCATCACCAC+CGG + chr2.1:3525092-3525111 None:intergenic 50.0%
TCTTCCTCATCCACCCAAAC+CGG + chr2.1:3524272-3524291 None:intergenic 50.0%
TGAGGCCACTATCAGCAGAA+CGG + chr2.1:3524184-3524203 None:intergenic 50.0%
! GTAGGGACACATTTTGCAGC+TGG - chr2.1:3525196-3525215 MS.gene47800:CDS 50.0%
!! CAAAAGTTGTTGAGCACCGG+TGG - chr2.1:3525073-3525092 MS.gene47800:CDS 50.0%
!!! GGTGGTGGTTTTATGGCTGT+AGG - chr2.1:3525478-3525497 MS.gene47800:CDS 50.0%
AAGCCGGGGTTATGAGGATC+TGG - chr2.1:3524511-3524530 MS.gene47800:CDS 55.0%
AGCTCAACCGAGGAACTGAC+TGG - chr2.1:3524411-3524430 MS.gene47800:CDS 55.0%
GACTGGGCACAGCTTGATTC+AGG - chr2.1:3524428-3524447 MS.gene47800:CDS 55.0%
GCTCAACCGAGGAACTGACT+GGG - chr2.1:3524412-3524431 MS.gene47800:CDS 55.0%
GGAAGCCATGACTGCTGCAA+AGG - chr2.1:3524136-3524155 MS.gene47800:CDS 55.0%
GGAAGCCTTTGCAGCAGTCA+TGG + chr2.1:3524144-3524163 None:intergenic 55.0%
TGCAGGCTCGCATTTGAACG+CGG + chr2.1:3525430-3525449 None:intergenic 55.0%
TGTTGCAAGCCGGGGTTATG+AGG - chr2.1:3524505-3524524 MS.gene47800:CDS 55.0%
!! AAAGCCGGTTTGGGTGGATG+AGG - chr2.1:3524265-3524284 MS.gene47800:CDS 55.0%
!! TTGTTGAGCACCGGTGGTGA+TGG - chr2.1:3525079-3525098 MS.gene47800:CDS 55.0%
!! TTTGCAGCTGGTTCGGCTAG+TGG - chr2.1:3525208-3525227 MS.gene47800:CDS 55.0%
GCTGTGCCCAGTCAGTTCCT+CGG + chr2.1:3524421-3524440 None:intergenic 60.0%
GGTCAGCTGCTTCTTGCTGC+TGG - chr2.1:3524680-3524699 MS.gene47800:CDS 60.0%
!! GCGAAGAAAGCCGGTTTGGG+TGG - chr2.1:3524259-3524278 MS.gene47800:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 3523888 3525555 3523888 ID=MS.gene47800
chr2.1 mRNA 3523888 3525555 3523888 ID=MS.gene47800.t1;Parent=MS.gene47800
chr2.1 exon 3523888 3525555 3523888 ID=MS.gene47800.t1.exon1;Parent=MS.gene47800.t1
chr2.1 CDS 3523888 3525555 3523888 ID=cds.MS.gene47800.t1;Parent=MS.gene47800.t1
Gene Sequence

>MS.gene47800

ATGAGTTTAATATCTCAAAATGCTCGCTCTAGAAATGAGACCAAAAGAGAGGATGACGTTAAGGAAAAAGAAGTTGAAGATGGTCAAGATAATGATGTTGATACCGTAGAAGTGAAAAAGAGGAAGCTAGATGGAAAGGAAGAACATTTGGCAAAAGAACAAGTTAAAGAGATGAAAAAACTTGAAAGCTTTTTGTTTGGGTCTCTCTACTCCCCTCTTGAATTTGGAAATGGGGATAACGATGAAGGGGAAGCCATGACTGCTGCAAAGGCTTCCAATTTGTTCTTCACTGACCGTTCTGCTGATAGTGGCCTCACTGTTTACCAAGAAGATTCCGACTTCTCGGATGGAAGTTGTGATGATGATGCTTTGCGAAGAAAGCCGGTTTGGGTGGATGAGGAAGAAGAGAAAGTCACTGTTAACATAGCCAAAGTTAACAGATTAAGGAAGTTAAGGAAGGAAGAGGACGAGAATGTGATATCTGGTTCAGAGTATGTGTCAAGATTGAGGGCTCAACATGTGAAGCTCAACCGAGGAACTGACTGGGCACAGCTTGATTCAGGGTCAAAAATGGATGGATCTTCTGATGATGAATTGACAGATGATGGAAGTAATGTTGTTGCAAGCCGGGGTTATGAGGATCTGGATGATATTCTCAGAACAAATGAAGACTTGGTTGTGAAGAGCAGCTCAAAATTGTTGCCAGGTCATATTGAATACTCGAAACTTGTAGATGCAAACATTCAGGATCCTTCTAATGGTCCCATTAATTCGGTTCAGTTCCATCGAAATGGTCAGCTGCTTCTTGCTGCTGGATTAGACCGGAATCTTAGATTCTTTCAAATCGATGGCAAACGGAACACCAAAATTCAAAGCATCTTCCTTGAAGATTGCCCCATTCGAAAAGCATCTTTCTTGCCCGATGGGTCTCAAGTGATAATATCTGGAAGAAGAAAGTTCTTTTATAGTCTTGATTTAGTTAAGGCTAGAGTTGATAAAATTGGTCCGCTGTTGTATAGGGAAGAGAAGAGTATTGAAGTTTTTGAGGTCTCTCCTGATTCTAAAATGATAGCCTTTGTGGGTGATGAAGGTTATATTTTACTGGTTTCAACAAAATCAAAGCAATTAGTTGGTACTCTGAAGATGAACGGAACAGCCCGTGCGTTAGCTTTTACTGAAGATGGACAAAAGTTGTTGAGCACCGGTGGTGATGGCCATGTTTACCATTGGGATCTGAGAACAAGGACTTGTATGCACAAAGGTGTAGATGAAGGCTGTTTAAACGGCACAGCCCTTTGTACTTCTCCAGTAGGGACACATTTTGCAGCTGGTTCGGCTAGTGGAGTTGTGAATATTTACAATAGTGAGGAATTTATTGGGGGAAAGAGAAAACCTATCAAGACCATTGATAACCTGAATACTGAAGTGGATTTCATGAAATTTAATCATGACTCTCAAATATTAGCAATCTGTTCAAGGTCAAAGAATAGTAGTTTGAAATTAATACATATACCATCCTACACTGTTTTCTCTAACTGGCCGCGTTCAAATGCGAGCCTGCATTATCCCCGTTGTATTGATTTTAGTCCAGGTGGTGGTTTTATGGCTGTAGGAAACGCTTCAGGCAAAGTGTTACTATATAAGTTGCATCATTATCACCATGCCTAA
Protein sequence

>MS.gene47800.t1

MSLISQNARSRNETKREDDVKEKEVEDGQDNDVDTVEVKKRKLDGKEEHLAKEQVKEMKKLESFLFGSLYSPLEFGNGDNDEGEAMTAAKASNLFFTDRSADSGLTVYQEDSDFSDGSCDDDALRRKPVWVDEEEEKVTVNIAKVNRLRKLRKEEDENVISGSEYVSRLRAQHVKLNRGTDWAQLDSGSKMDGSSDDELTDDGSNVVASRGYEDLDDILRTNEDLVVKSSSKLLPGHIEYSKLVDANIQDPSNGPINSVQFHRNGQLLLAAGLDRNLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVIISGRRKFFYSLDLVKARVDKIGPLLYREEKSIEVFEVSPDSKMIAFVGDEGYILLVSTKSKQLVGTLKMNGTARALAFTEDGQKLLSTGGDGHVYHWDLRTRTCMHKGVDEGCLNGTALCTSPVGTHFAAGSASGVVNIYNSEEFIGGKRKPIKTIDNLNTEVDFMKFNHDSQILAICSRSKNSSLKLIHIPSYTVFSNWPRSNASLHYPRCIDFSPGGGFMAVGNASGKVLLYKLHHYHHA