Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65479.t1 | RHN78568.1 | 94.8 | 967 | 40 | 5 | 132 | 1098 | 1 | 957 | 0.00E+00 | 1422.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65479.t1 | Q8R3N1 | 35.1 | 934 | 494 | 16 | 175 | 1095 | 26 | 860 | 1.4e-52 | 209.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65479.t1 | A0A396JQQ9 | 94.8 | 967 | 40 | 5 | 132 | 1098 | 1 | 957 | 0.0e+00 | 1422.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene65479 | 0.813449 | 2.55E-51 | -1.69E-46 |
MS.gene049159 | MS.gene65479 | 0.842487 | 2.51E-58 | -1.69E-46 |
MS.gene049254 | MS.gene65479 | 0.812087 | 5.06E-51 | -1.69E-46 |
MS.gene049343 | MS.gene65479 | 0.803401 | 3.55E-49 | -1.69E-46 |
MS.gene049501 | MS.gene65479 | 0.82634 | 2.86E-54 | -1.69E-46 |
MS.gene049983 | MS.gene65479 | 0.805595 | 1.24E-49 | -1.69E-46 |
MS.gene050719 | MS.gene65479 | 0.80161 | 8.30E-49 | -1.69E-46 |
MS.gene050721 | MS.gene65479 | 0.80411 | 2.53E-49 | -1.69E-46 |
MS.gene050737 | MS.gene65479 | 0.816673 | 4.90E-52 | -1.69E-46 |
MS.gene050941 | MS.gene65479 | 0.807729 | 4.38E-50 | -1.69E-46 |
MS.gene051198 | MS.gene65479 | 0.824136 | 9.51E-54 | -1.69E-46 |
MS.gene051210 | MS.gene65479 | 0.81101 | 8.67E-51 | -1.69E-46 |
MS.gene051543 | MS.gene65479 | 0.81843 | 1.97E-52 | -1.69E-46 |
MS.gene052611 | MS.gene65479 | 0.802831 | 4.66E-49 | -1.69E-46 |
MS.gene052863 | MS.gene65479 | 0.825704 | 4.05E-54 | -1.69E-46 |
MS.gene052896 | MS.gene65479 | 0.845225 | 4.64E-59 | -1.69E-46 |
MS.gene053008 | MS.gene65479 | 0.833726 | 4.52E-56 | -1.69E-46 |
MS.gene053226 | MS.gene65479 | 0.807607 | 4.65E-50 | -1.69E-46 |
MS.gene053381 | MS.gene65479 | 0.82722 | 1.76E-54 | -1.69E-46 |
MS.gene05415 | MS.gene65479 | 0.803729 | 3.03E-49 | -1.69E-46 |
MS.gene054472 | MS.gene65479 | 0.809859 | 1.54E-50 | -1.69E-46 |
MS.gene054651 | MS.gene65479 | 0.805366 | 1.38E-49 | -1.69E-46 |
MS.gene055818 | MS.gene65479 | 0.808648 | 2.79E-50 | -1.69E-46 |
MS.gene055926 | MS.gene65479 | 0.801742 | 7.80E-49 | -1.69E-46 |
MS.gene056595 | MS.gene65479 | 0.812773 | 3.58E-51 | -1.69E-46 |
MS.gene057444 | MS.gene65479 | 0.808235 | 3.42E-50 | -1.69E-46 |
MS.gene057855 | MS.gene65479 | 0.805874 | 1.08E-49 | -1.69E-46 |
MS.gene057869 | MS.gene65479 | 0.804576 | 2.02E-49 | -1.69E-46 |
MS.gene057915 | MS.gene65479 | 0.807592 | 4.69E-50 | -1.69E-46 |
MS.gene058010 | MS.gene65479 | 0.801546 | 8.56E-49 | -1.69E-46 |
MS.gene058595 | MS.gene65479 | 0.800073 | 1.71E-48 | -1.69E-46 |
MS.gene058979 | MS.gene65479 | 0.837897 | 3.96E-57 | -1.69E-46 |
MS.gene059570 | MS.gene65479 | 0.801076 | 1.07E-48 | -1.69E-46 |
MS.gene059725 | MS.gene65479 | 0.80058 | 1.35E-48 | -1.69E-46 |
MS.gene059842 | MS.gene65479 | 0.803731 | 3.03E-49 | -1.69E-46 |
MS.gene060296 | MS.gene65479 | 0.80127 | 9.74E-49 | -1.69E-46 |
MS.gene060322 | MS.gene65479 | 0.805894 | 1.07E-49 | -1.69E-46 |
MS.gene06052 | MS.gene65479 | 0.842205 | 2.98E-58 | -1.69E-46 |
MS.gene060683 | MS.gene65479 | 0.809867 | 1.53E-50 | -1.69E-46 |
MS.gene060685 | MS.gene65479 | 0.814013 | 1.91E-51 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65479.t1 | MTR_1g442830 | 94.209 | 967 | 35 | 7 | 132 | 1098 | 1 | 946 | 0.0 | 1811 |
MS.gene65479.t1 | MTR_1g064300 | 93.911 | 969 | 52 | 3 | 132 | 1098 | 1 | 964 | 0.0 | 1642 |
MS.gene65479.t1 | MTR_1g064300 | 96.174 | 758 | 27 | 1 | 343 | 1098 | 1 | 758 | 0.0 | 1469 |
MS.gene65479.t1 | MTR_1g442820 | 95.697 | 581 | 24 | 1 | 343 | 923 | 1 | 580 | 0.0 | 1126 |
MS.gene65479.t1 | MTR_1g064300 | 91.551 | 722 | 54 | 3 | 132 | 851 | 1 | 717 | 0.0 | 1118 |
MS.gene65479.t1 | MTR_5g016590 | 88.525 | 61 | 7 | 0 | 1 | 61 | 1 | 61 | 7.14e-26 | 108 |
MS.gene65479.t1 | MTR_7g070070 | 88.525 | 61 | 7 | 0 | 1 | 61 | 1 | 61 | 1.04e-25 | 107 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65479.t1 | AT1G69070 | 51.180 | 932 | 398 | 13 | 161 | 1090 | 18 | 894 | 0.0 | 818 |
MS.gene65479.t1 | AT1G69070 | 50.966 | 932 | 397 | 14 | 161 | 1090 | 18 | 891 | 0.0 | 809 |
MS.gene65479.t1 | AT3G22110 | 85.246 | 61 | 9 | 0 | 1 | 61 | 1 | 61 | 3.75e-25 | 106 |
MS.gene65479.t1 | AT4G15165 | 82.258 | 62 | 11 | 0 | 1 | 62 | 1 | 62 | 1.33e-24 | 103 |
Find 204 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTCCAATGACTATCTTCT+TGG | 0.180101 | 1.1:-26461484 | None:intergenic |
TTCGTCCATCACTTCCTTCT+TGG | 0.198459 | 1.1:-26460041 | None:intergenic |
TCTTCACCACTGACAGTTTC+AGG | 0.201686 | 1.1:+26465733 | MS.gene65479:CDS |
CTGCCAGTTATATCATCTTA+TGG | 0.216501 | 1.1:+26465608 | MS.gene65479:intron |
TGAAGAAACTATGACTAAAA+AGG | 0.225009 | 1.1:+26461092 | MS.gene65479:CDS |
TGCTTTCATGGCTACTGCTT+CGG | 0.244088 | 1.1:-26457479 | None:intergenic |
GATGAAGCGCTTGATGATTT+TGG | 0.273921 | 1.1:+26457709 | MS.gene65479:CDS |
GCTTTCATGGCTACTGCTTC+GGG | 0.294884 | 1.1:-26457478 | None:intergenic |
GGCTCATTCCGAGGCCTTGT+TGG | 0.298038 | 1.1:+26460253 | MS.gene65479:CDS |
TCAAGTAGTAATCTCAAAAT+TGG | 0.299845 | 1.1:-26466133 | None:intergenic |
TTCGGAGCTTCAATTATATA+AGG | 0.299927 | 1.1:-26461531 | None:intergenic |
AGAATACTACTTTGAAAGAT+TGG | 0.304400 | 1.1:+26461256 | MS.gene65479:CDS |
GTCAAAAGATGGGGTTGTTC+TGG | 0.308866 | 1.1:+26456440 | MS.gene65479:CDS |
ATATCACGGCCAGATGTTAT+TGG | 0.309858 | 1.1:-26463281 | None:intergenic |
TACCTTGAAGATATGAGATT+TGG | 0.314591 | 1.1:-26456620 | None:intergenic |
GCACATATTGCAGCAAAGTA+TGG | 0.315156 | 1.1:-26462955 | None:intergenic |
TTCAAAGCTTTCATCTTGTT+TGG | 0.320962 | 1.1:-26460287 | None:intergenic |
CTTTCAGCTCGCTCACGGTC+TGG | 0.326015 | 1.1:-26466463 | None:intergenic |
TTTGCAGATAATTCAGATTT+GGG | 0.330476 | 1.1:+26459704 | MS.gene65479:intron |
AAAGTTTGAATAAATACTAT+TGG | 0.330563 | 1.1:-26464279 | None:intergenic |
TGAATAAATACTATTGGTTC+AGG | 0.334462 | 1.1:-26464273 | None:intergenic |
TTGGATGATTTCGCCATTGT+TGG | 0.340307 | 1.1:-26457376 | None:intergenic |
CAAGAACATGCTTTCAAATC+TGG | 0.340841 | 1.1:+26466646 | MS.gene65479:CDS |
TTCTTGATGCAGCTATGTTA+AGG | 0.341761 | 1.1:+26466426 | MS.gene65479:intron |
GGTGTCGTTCATCATTTCTT+GGG | 0.349862 | 1.1:-26456536 | None:intergenic |
CGTAGGAAATTCGAAGTAAT+GGG | 0.355347 | 1.1:+26457547 | MS.gene65479:CDS |
TTCAGTAATTTGATTGGAAC+TGG | 0.357854 | 1.1:-26466283 | None:intergenic |
AAGCATGTTCTTGCTCTTGA+AGG | 0.361044 | 1.1:-26466636 | None:intergenic |
AGACAACAGTTATACTTTGT+TGG | 0.365843 | 1.1:-26456582 | None:intergenic |
TTTAGTCCTTCCATACTTCT+CGG | 0.367067 | 1.1:-26466608 | None:intergenic |
ACAGTTATACTTTGTTGGTT+TGG | 0.375456 | 1.1:-26456577 | None:intergenic |
AAAGCAAGAGCCGAGAAGTA+TGG | 0.375543 | 1.1:+26466598 | MS.gene65479:CDS |
TTTGAAGATGAGATGCTTGA+TGG | 0.376740 | 1.1:+26459281 | MS.gene65479:CDS |
AATCTTCGGAGTTTATTGAT+AGG | 0.376829 | 1.1:+26457671 | MS.gene65479:CDS |
GAAAGTGTAAAGGGAGATAA+TGG | 0.377920 | 1.1:+26461450 | MS.gene65479:CDS |
TTAGGATTCAGTAATTTGAT+TGG | 0.384079 | 1.1:-26466289 | None:intergenic |
AAAATATGCCAAATGCATTA+CGG | 0.387295 | 1.1:+26466170 | MS.gene65479:CDS |
TCCATTGGCGATGCTGCGTT+TGG | 0.393857 | 1.1:-26457395 | None:intergenic |
GACAATGAATAATTCTGTTC+AGG | 0.394333 | 1.1:+26460373 | MS.gene65479:CDS |
AGGTGAGGCGCGAAGCTAAA+GGG | 0.397180 | 1.1:+26466503 | MS.gene65479:CDS |
AGTATCACAGGAGTCATAAC+TGG | 0.397195 | 1.1:-26463230 | None:intergenic |
ATTACTGAATCCTAAGTTTG+AGG | 0.398976 | 1.1:+26466297 | MS.gene65479:CDS |
GGTTTGGTTATGCAGAAGTT+TGG | 0.401557 | 1.1:-26456484 | None:intergenic |
GGGTGTCGTTCATCATTTCT+TGG | 0.403008 | 1.1:-26456537 | None:intergenic |
TCTTGATGCAGCTATGTTAA+GGG | 0.406379 | 1.1:+26466427 | MS.gene65479:intron |
GGTGAAGAATGGAGAGTCTT+CGG | 0.406595 | 1.1:-26465718 | None:intergenic |
TCTTAATCATCAATCGAATT+CGG | 0.408303 | 1.1:+26461607 | MS.gene65479:CDS |
TGACCAACTTGTCAGACAAA+TGG | 0.412014 | 1.1:+26460501 | MS.gene65479:CDS |
AAATATGCCAAATGCATTAC+GGG | 0.415102 | 1.1:+26466171 | MS.gene65479:CDS |
TAGAAAAGGGTATTGTGGTT+TGG | 0.415825 | 1.1:-26456500 | None:intergenic |
TCCGTACTCATCTCTATCAA+TGG | 0.415890 | 1.1:-26462928 | None:intergenic |
GAGATCGCAGCGTGAACGTC+AGG | 0.416024 | 1.1:+26457744 | MS.gene65479:CDS |
AACCAAATCTCATATCTTCA+AGG | 0.417427 | 1.1:+26456618 | MS.gene65479:CDS |
GAATACTACTTTGAAAGATT+GGG | 0.420352 | 1.1:+26461257 | MS.gene65479:CDS |
TTAATCAATTCAACGTTCAA+TGG | 0.421058 | 1.1:-26462892 | None:intergenic |
TATCACGGCCAGATGTTATT+GGG | 0.421115 | 1.1:-26463280 | None:intergenic |
GATTTCGCCATTGTTGGGTT+AGG | 0.421634 | 1.1:-26457370 | None:intergenic |
ATCGAAATCTTGTCAAAAGA+TGG | 0.422722 | 1.1:+26456429 | MS.gene65479:CDS |
TCATCACCAGAGAGAGATCT+TGG | 0.422739 | 1.1:-26461045 | None:intergenic |
GATTCTGTTGAAAGTGTAAA+GGG | 0.427997 | 1.1:+26461441 | MS.gene65479:CDS |
TCCTCATTAATGCGCAATAG+TGG | 0.429661 | 1.1:-26465648 | None:intergenic |
ACGAGCCAACCCCATTCGTT+TGG | 0.430062 | 1.1:-26457590 | None:intergenic |
CATAATTCTTCAAAGGTCTT+CGG | 0.431108 | 1.1:-26461549 | None:intergenic |
AGGCATTGATATATCCTTGT+AGG | 0.432380 | 1.1:-26466075 | None:intergenic |
CATAACTGGATGTCTAAAAT+CGG | 0.433346 | 1.1:-26463216 | None:intergenic |
TTTGAAGGAATTGATGGTCT+TGG | 0.436407 | 1.1:+26459248 | MS.gene65479:CDS |
CCAACCCATTCGAGTCAATC+TGG | 0.436609 | 1.1:+26457521 | MS.gene65479:CDS |
AAATCTGGACAACTAGGAAA+AGG | 0.438682 | 1.1:+26466661 | MS.gene65479:CDS |
GAAATCCGATTGGAATGAAT+CGG | 0.439224 | 1.1:+26456756 | MS.gene65479:CDS |
GTGAAGAATGGAGAGTCTTC+GGG | 0.439648 | 1.1:-26465717 | None:intergenic |
TCGGCTACGCCAGCTTCGCC+TGG | 0.440126 | 1.1:-26459758 | None:intergenic |
AATGCCAAGAAGATAGTCAT+TGG | 0.441829 | 1.1:+26461480 | MS.gene65479:CDS |
AGATAAGGACTTCACTTCTC+TGG | 0.442591 | 1.1:+26460232 | MS.gene65479:CDS |
TGGTGAAGATGATGATGATT+TGG | 0.442638 | 1.1:+26461179 | MS.gene65479:CDS |
GATGAGTTTGAAGGAATTGA+TGG | 0.446266 | 1.1:+26459242 | MS.gene65479:CDS |
AAGAGAACATCTAGAGGAGT+TGG | 0.446316 | 1.1:+26460588 | MS.gene65479:CDS |
TATATCATGCGAAAATTCTC+AGG | 0.447408 | 1.1:+26464329 | MS.gene65479:CDS |
GAGGAAGAAGACACTTCTTA+AGG | 0.451715 | 1.1:+26457630 | MS.gene65479:CDS |
ACAAGTTGGTCATATTCATC+AGG | 0.458842 | 1.1:-26460490 | None:intergenic |
TGGATGATTTCGCCATTGTT+GGG | 0.462098 | 1.1:-26457375 | None:intergenic |
TGATATATGTTTACTTTCAG+TGG | 0.466596 | 1.1:-26464313 | None:intergenic |
GACCAACTTGTCAGACAAAT+GGG | 0.467069 | 1.1:+26460502 | MS.gene65479:CDS |
AAAGGAGATACCAAACGAAT+GGG | 0.469066 | 1.1:+26457580 | MS.gene65479:CDS |
GAGTATGCAATGGAGGCTAT+TGG | 0.473751 | 1.1:+26456390 | MS.gene65479:CDS |
CGCTGTGTCTATTGCGATTG+TGG | 0.475563 | 1.1:+26463174 | MS.gene65479:CDS |
ATCCCATTTGTCTGACAAGT+TGG | 0.477539 | 1.1:-26460504 | None:intergenic |
GAACGAACTCAAGTTATCAT+AGG | 0.478056 | 1.1:-26466095 | None:intergenic |
GATGAAAGCTTTGAATGCTC+TGG | 0.481620 | 1.1:+26460295 | MS.gene65479:CDS |
GACTAAGGAAGAGATTGATC+AGG | 0.482117 | 1.1:+26460561 | MS.gene65479:CDS |
CTACTTCTTGCTTGATGTGA+AGG | 0.483308 | 1.1:+26466552 | MS.gene65479:CDS |
ATGCAGAGTCCAGGCGAAGC+TGG | 0.483777 | 1.1:+26459749 | MS.gene65479:CDS |
ACGTAGGAAATTCGAAGTAA+TGG | 0.485316 | 1.1:+26457546 | MS.gene65479:CDS |
TTCAGATAGGCTGAAGACTA+AGG | 0.486803 | 1.1:+26460546 | MS.gene65479:CDS |
GAAGAAGAAGAACAACAAGA+TGG | 0.487656 | 1.1:+26457453 | MS.gene65479:CDS |
GTTGTTGTTGCTAGTTCCAT+TGG | 0.488639 | 1.1:-26457410 | None:intergenic |
GGCATTGATATATCCTTGTA+GGG | 0.493842 | 1.1:-26466074 | None:intergenic |
AGCTGCGGAAGAAGTTGATA+AGG | 0.495706 | 1.1:+26461374 | MS.gene65479:CDS |
AGGTCTGAAGATTCTGATGA+TGG | 0.496264 | 1.1:+26461204 | MS.gene65479:CDS |
CAGATAATTCAGATTTGGGT+CGG | 0.499746 | 1.1:+26459708 | MS.gene65479:intron |
AGTCAGAGCCAACAAGGCCT+CGG | 0.501493 | 1.1:-26460261 | None:intergenic |
ATGCGTTGCCCAATAACATC+TGG | 0.502843 | 1.1:+26463272 | MS.gene65479:CDS |
TGAACAGAGTAACAAATCTT+CGG | 0.505782 | 1.1:+26457657 | MS.gene65479:CDS |
TCGAAATCTTGTCAAAAGAT+GGG | 0.508922 | 1.1:+26456430 | MS.gene65479:CDS |
GCCACTATTGCGCATTAATG+AGG | 0.509019 | 1.1:+26465647 | MS.gene65479:CDS |
GAGTTTATTGATAGGCGAAT+CGG | 0.509318 | 1.1:+26457679 | MS.gene65479:CDS |
AAGATGGCTTGTCTGCTAAA+CGG | 0.510993 | 1.1:+26460351 | MS.gene65479:CDS |
GAGAAACCAAGATCTCTCTC+TGG | 0.511990 | 1.1:+26461039 | MS.gene65479:CDS |
CTGACCCGATTCATTCCAAT+CGG | 0.512564 | 1.1:-26456761 | None:intergenic |
GATGATGCTGATGAGTTTGA+AGG | 0.516841 | 1.1:+26459233 | MS.gene65479:CDS |
CACTTCTCTGGCTCATTCCG+AGG | 0.518270 | 1.1:+26460244 | MS.gene65479:CDS |
GAGGTGAGGCGCGAAGCTAA+AGG | 0.518340 | 1.1:+26466502 | MS.gene65479:CDS |
TGATTCTGTTGAAAGTGTAA+AGG | 0.522453 | 1.1:+26461440 | MS.gene65479:CDS |
AATCTGGACAACTAGGAAAA+GGG | 0.524082 | 1.1:+26466662 | MS.gene65479:CDS |
AAGGAATTGATGGTCTTGGA+AGG | 0.527484 | 1.1:+26459252 | MS.gene65479:CDS |
TGAAGAATTATGTTCACTAG+TGG | 0.527610 | 1.1:+26461560 | MS.gene65479:CDS |
CACATATTGCAGCAAAGTAT+GGG | 0.528243 | 1.1:-26462954 | None:intergenic |
TTATATGGTGGAAATCCGAT+TGG | 0.528328 | 1.1:+26456746 | MS.gene65479:CDS |
GCTTTCAAATCTGGACAACT+AGG | 0.529239 | 1.1:+26466655 | MS.gene65479:CDS |
AGAACATCTAGAGGAGTTGG+AGG | 0.530134 | 1.1:+26460591 | MS.gene65479:CDS |
GGAAGTAGAAAAGGGTATTG+TGG | 0.530712 | 1.1:-26456505 | None:intergenic |
ACTTGGTAAAGATGTCCTTC+AGG | 0.532806 | 1.1:-26456366 | None:intergenic |
TTAGTCTTCAGCCTATCTGA+AGG | 0.535111 | 1.1:-26460544 | None:intergenic |
AGGGAAAATGTCGAAAGAGT+TGG | 0.540454 | 1.1:+26461503 | MS.gene65479:CDS |
AGTCATAGTTTCTTCATCGA+CGG | 0.541874 | 1.1:-26461085 | None:intergenic |
TGTTCTGGTTGGTGAAAAGA+AGG | 0.542861 | 1.1:+26456455 | MS.gene65479:CDS |
GTGACCAGATTGACTCGAAT+GGG | 0.542975 | 1.1:-26457525 | None:intergenic |
AGACACAGCGTCTTTGAAGA+AGG | 0.543316 | 1.1:-26463161 | None:intergenic |
ATGGAGGCTATTGGAAATGC+TGG | 0.543717 | 1.1:+26456399 | MS.gene65479:CDS |
AAACTGTCAGTGGTGAAGAA+TGG | 0.548883 | 1.1:-26465729 | None:intergenic |
TCGCACATCAATAGTATCAC+AGG | 0.550865 | 1.1:-26463242 | None:intergenic |
TGGATGAACATCATACTTTG+AGG | 0.551930 | 1.1:+26466233 | MS.gene65479:CDS |
GGCGAAGCTGGCGTAGCCGA+CGG | 0.553219 | 1.1:+26459761 | MS.gene65479:CDS |
CGAGAGAAGAGATGAAGAGG+AGG | 0.554549 | 1.1:+26461134 | MS.gene65479:CDS |
AGTTTCTTCATCGACGGAGA+AGG | 0.554848 | 1.1:-26461079 | None:intergenic |
AAGAAGAAGAACAACAAGAT+GGG | 0.558181 | 1.1:+26457454 | MS.gene65479:CDS |
TCTGGCCGTGATATTGCCGT+TGG | 0.558685 | 1.1:+26463290 | MS.gene65479:CDS |
TCTCTCTCTGGTGATGACCT+TGG | 0.559106 | 1.1:+26461051 | MS.gene65479:CDS |
GTGTCGTTCATCATTTCTTG+GGG | 0.559863 | 1.1:-26456535 | None:intergenic |
CCTCCATTGCATACTCCACT+TGG | 0.561230 | 1.1:-26456383 | None:intergenic |
TAAAGGAGATACCAAACGAA+TGG | 0.561870 | 1.1:+26457579 | MS.gene65479:CDS |
AAATCCGATTGGAATGAATC+GGG | 0.565568 | 1.1:+26456757 | MS.gene65479:CDS |
GAAGACGATGATATCAGTGC+TGG | 0.566507 | 1.1:+26461321 | MS.gene65479:CDS |
TCTCGAGAGAAGAGATGAAG+AGG | 0.567993 | 1.1:+26461131 | MS.gene65479:CDS |
AAGCTGGCGTAGCCGACGGT+GGG | 0.570154 | 1.1:+26459765 | MS.gene65479:CDS |
CCTGCTGGAAGGATTAGATA+AGG | 0.573153 | 1.1:+26460217 | MS.gene65479:CDS |
ACCATTGATAGAGATGAGTA+CGG | 0.573361 | 1.1:+26462927 | MS.gene65479:CDS |
GCTCGTAGTATGCAGAGTCC+AGG | 0.573666 | 1.1:+26459740 | MS.gene65479:CDS |
TCCAAACGCAGCATCGCCAA+TGG | 0.573826 | 1.1:+26457394 | MS.gene65479:CDS |
TAAGGAAGAGATTGATCAGG+AGG | 0.574977 | 1.1:+26460564 | MS.gene65479:CDS |
CGTGACCAGATTGACTCGAA+TGG | 0.575204 | 1.1:-26457526 | None:intergenic |
GAAGCTGGCGTAGCCGACGG+TGG | 0.575891 | 1.1:+26459764 | MS.gene65479:CDS |
GTTCTCTTGCTATTGAGAAG+AGG | 0.577774 | 1.1:+26457611 | MS.gene65479:CDS |
GATGATGATGATATCAGTGC+AGG | 0.578213 | 1.1:+26461288 | MS.gene65479:CDS |
AGATACCAAACGAATGGGGT+TGG | 0.579161 | 1.1:+26457585 | MS.gene65479:CDS |
GGTGAGGCGCGAAGCTAAAG+GGG | 0.580163 | 1.1:+26466504 | MS.gene65479:CDS |
AAAGATGGGGTTGTTCTGGT+TGG | 0.580246 | 1.1:+26456444 | MS.gene65479:CDS |
GCCAAGAAGATAGTCATTGG+AGG | 0.581374 | 1.1:+26461483 | MS.gene65479:CDS |
ACGGGATAAAATTAAAGATG+TGG | 0.582762 | 1.1:+26466189 | MS.gene65479:CDS |
TTCACTCGAATCTTCAGCAG+CGG | 0.584454 | 1.1:-26460983 | None:intergenic |
CAGGAGAGAAGATTGTTGTA+CGG | 0.584834 | 1.1:-26456347 | None:intergenic |
TAAAACCAAGAAGGAAGTGA+TGG | 0.586650 | 1.1:+26460036 | MS.gene65479:CDS |
CCAAGTGGAGTATGCAATGG+AGG | 0.586753 | 1.1:+26456383 | MS.gene65479:CDS |
TAGTGAACATAATTCTTCAA+AGG | 0.586872 | 1.1:-26461556 | None:intergenic |
TTACCAAGTGGAGTATGCAA+TGG | 0.591393 | 1.1:+26456380 | MS.gene65479:CDS |
CAAGAGCCGAGAAGTATGGA+AGG | 0.592553 | 1.1:+26466602 | MS.gene65479:CDS |
CCAAGAAGATAGTCATTGGA+GGG | 0.596888 | 1.1:+26461484 | MS.gene65479:CDS |
CCTTATCTAATCCTTCCAGC+AGG | 0.597560 | 1.1:-26460217 | None:intergenic |
CTCAAAACCTAACCCAACAA+TGG | 0.598589 | 1.1:+26457363 | MS.gene65479:CDS |
GTAATGGGGCAGAAGCGTAA+AGG | 0.598634 | 1.1:+26457562 | MS.gene65479:CDS |
ACAACAATCTTCTCTCCTGA+AGG | 0.598896 | 1.1:+26456351 | MS.gene65479:CDS |
CTATCACAGAAAGTAGCAGT+TGG | 0.599380 | 1.1:+26463138 | MS.gene65479:intron |
ATCGGAACATGGAAATACCA+TGG | 0.602060 | 1.1:-26463198 | None:intergenic |
TCTATTGCGATTGTGGTCCA+TGG | 0.603912 | 1.1:+26463181 | MS.gene65479:CDS |
TGGTTGTTTGAGTGATACGA+GGG | 0.604013 | 1.1:-26456557 | None:intergenic |
AGCTGGCGTAGCCGACGGTG+GGG | 0.605501 | 1.1:+26459766 | MS.gene65479:CDS |
CGAAATCTTGTCAAAAGATG+GGG | 0.608982 | 1.1:+26456431 | MS.gene65479:CDS |
GGAGGAAAGAGAACATCTAG+AGG | 0.609657 | 1.1:+26460582 | MS.gene65479:CDS |
AAGAACCAACGGCAATATCA+CGG | 0.614085 | 1.1:-26463295 | None:intergenic |
ACAGAGACATAAAACCAAGA+AGG | 0.615445 | 1.1:+26460027 | MS.gene65479:intron |
TCCTTGTAGGGTTTCAACAG+CGG | 0.615747 | 1.1:-26466062 | None:intergenic |
AAAGATGAAGACCTGCTGGA+AGG | 0.616144 | 1.1:+26460206 | MS.gene65479:CDS |
ACCGCTGTTGAAACCCTACA+AGG | 0.620068 | 1.1:+26466061 | MS.gene65479:CDS |
CCAGATTGACTCGAATGGGT+TGG | 0.624693 | 1.1:-26457521 | None:intergenic |
AGGAATTGATGGTCTTGGAA+GGG | 0.625979 | 1.1:+26459253 | MS.gene65479:CDS |
TGCGTGCTCGCCCTTCAGAT+AGG | 0.627560 | 1.1:+26460533 | MS.gene65479:CDS |
TGGTTCAGTCAGAGCCAACA+AGG | 0.630538 | 1.1:-26460267 | None:intergenic |
TAGTCTTCAGCCTATCTGAA+GGG | 0.632652 | 1.1:-26460543 | None:intergenic |
TGGTTCAGAAGACGAAGATG+AGG | 0.638131 | 1.1:+26461341 | MS.gene65479:CDS |
GGATGTCTAAAATCGGAACA+TGG | 0.639818 | 1.1:-26463209 | None:intergenic |
GAGAGAAGAGATGAAGAGGA+GGG | 0.645634 | 1.1:+26461135 | MS.gene65479:CDS |
TGAGCTGATTAAGTTGAAAG+TGG | 0.649315 | 1.1:+26466213 | MS.gene65479:CDS |
TGAGGCGACCACTTCAAATG+CGG | 0.651913 | 1.1:+26466251 | MS.gene65479:CDS |
TCTTCTAGTGAAGATGATGA+TGG | 0.654306 | 1.1:+26461159 | MS.gene65479:CDS |
TGAGGATGAAGAAAGAGCTG+CGG | 0.655855 | 1.1:+26461359 | MS.gene65479:CDS |
AGAACATAAGAAAGAACCAA+CGG | 0.656060 | 1.1:-26463306 | None:intergenic |
TTGGTTGTTTGAGTGATACG+AGG | 0.656391 | 1.1:-26456558 | None:intergenic |
AAGATGATGATGATTTGGAA+AGG | 0.659962 | 1.1:+26461184 | MS.gene65479:CDS |
TCGAGTCAATCTGGTCACGT+AGG | 0.664541 | 1.1:+26457530 | MS.gene65479:CDS |
AGATTCTGATGATGGATCAG+AGG | 0.668735 | 1.1:+26461212 | MS.gene65479:CDS |
TGAAGGACATCTTTACCAAG+TGG | 0.670530 | 1.1:+26456368 | MS.gene65479:CDS |
CGACGGAGAAGGAATCGCCA+AGG | 0.679772 | 1.1:-26461068 | None:intergenic |
AAGGAGATACCAAACGAATG+GGG | 0.694247 | 1.1:+26457581 | MS.gene65479:CDS |
GTAGGAAATTCGAAGTAATG+GGG | 0.698035 | 1.1:+26457548 | MS.gene65479:CDS |
GGTTTACCTGAAACTGTCAG+TGG | 0.726495 | 1.1:-26465739 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 26456327 | 26466702 | 26456327 | ID=MS.gene65479 |
chr1.1 | mRNA | 26456327 | 26466702 | 26456327 | ID=MS.gene65479.t1;Parent=MS.gene65479 |
chr1.1 | exon | 26456327 | 26456639 | 26456327 | ID=MS.gene65479.t1.exon1;Parent=MS.gene65479.t1 |
chr1.1 | CDS | 26456327 | 26456639 | 26456327 | ID=cds.MS.gene65479.t1;Parent=MS.gene65479.t1 |
chr1.1 | exon | 26456729 | 26456778 | 26456729 | ID=MS.gene65479.t1.exon2;Parent=MS.gene65479.t1 |
chr1.1 | CDS | 26456729 | 26456778 | 26456729 | ID=cds.MS.gene65479.t1;Parent=MS.gene65479.t1 |
chr1.1 | exon | 26457352 | 26457765 | 26457352 | ID=MS.gene65479.t1.exon3;Parent=MS.gene65479.t1 |
chr1.1 | CDS | 26457352 | 26457765 | 26457352 | ID=cds.MS.gene65479.t1;Parent=MS.gene65479.t1 |
chr1.1 | exon | 26459182 | 26459323 | 26459182 | ID=MS.gene65479.t1.exon4;Parent=MS.gene65479.t1 |
chr1.1 | CDS | 26459182 | 26459323 | 26459182 | ID=cds.MS.gene65479.t1;Parent=MS.gene65479.t1 |
chr1.1 | exon | 26459711 | 26459793 | 26459711 | ID=MS.gene65479.t1.exon5;Parent=MS.gene65479.t1 |
chr1.1 | CDS | 26459711 | 26459793 | 26459711 | ID=cds.MS.gene65479.t1;Parent=MS.gene65479.t1 |
chr1.1 | exon | 26460031 | 26460090 | 26460031 | ID=MS.gene65479.t1.exon6;Parent=MS.gene65479.t1 |
chr1.1 | CDS | 26460031 | 26460090 | 26460031 | ID=cds.MS.gene65479.t1;Parent=MS.gene65479.t1 |
chr1.1 | exon | 26460182 | 26460394 | 26460182 | ID=MS.gene65479.t1.exon7;Parent=MS.gene65479.t1 |
chr1.1 | CDS | 26460182 | 26460394 | 26460182 | ID=cds.MS.gene65479.t1;Parent=MS.gene65479.t1 |
chr1.1 | exon | 26460484 | 26460612 | 26460484 | ID=MS.gene65479.t1.exon8;Parent=MS.gene65479.t1 |
chr1.1 | CDS | 26460484 | 26460612 | 26460484 | ID=cds.MS.gene65479.t1;Parent=MS.gene65479.t1 |
chr1.1 | exon | 26460961 | 26461677 | 26460961 | ID=MS.gene65479.t1.exon9;Parent=MS.gene65479.t1 |
chr1.1 | CDS | 26460961 | 26461677 | 26460961 | ID=cds.MS.gene65479.t1;Parent=MS.gene65479.t1 |
chr1.1 | exon | 26462841 | 26463033 | 26462841 | ID=MS.gene65479.t1.exon10;Parent=MS.gene65479.t1 |
chr1.1 | CDS | 26462841 | 26463033 | 26462841 | ID=cds.MS.gene65479.t1;Parent=MS.gene65479.t1 |
chr1.1 | exon | 26463147 | 26463340 | 26463147 | ID=MS.gene65479.t1.exon11;Parent=MS.gene65479.t1 |
chr1.1 | CDS | 26463147 | 26463340 | 26463147 | ID=cds.MS.gene65479.t1;Parent=MS.gene65479.t1 |
chr1.1 | exon | 26464246 | 26464350 | 26464246 | ID=MS.gene65479.t1.exon12;Parent=MS.gene65479.t1 |
chr1.1 | CDS | 26464246 | 26464350 | 26464246 | ID=cds.MS.gene65479.t1;Parent=MS.gene65479.t1 |
chr1.1 | exon | 26465615 | 26465754 | 26465615 | ID=MS.gene65479.t1.exon13;Parent=MS.gene65479.t1 |
chr1.1 | CDS | 26465615 | 26465754 | 26465615 | ID=cds.MS.gene65479.t1;Parent=MS.gene65479.t1 |
chr1.1 | exon | 26466045 | 26466323 | 26466045 | ID=MS.gene65479.t1.exon14;Parent=MS.gene65479.t1 |
chr1.1 | CDS | 26466045 | 26466323 | 26466045 | ID=cds.MS.gene65479.t1;Parent=MS.gene65479.t1 |
chr1.1 | exon | 26466438 | 26466702 | 26466438 | ID=MS.gene65479.t1.exon15;Parent=MS.gene65479.t1 |
chr1.1 | CDS | 26466438 | 26466702 | 26466438 | ID=cds.MS.gene65479.t1;Parent=MS.gene65479.t1 |
Gene Sequence |
Protein sequence |