AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76511

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76511.t1 MTR_2g101620 97.117 555 16 0 1 555 1 555 0.0 1115
MS.gene76511.t1 MTR_2g009800 90.631 555 52 0 1 555 1 555 0.0 1043
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76511.t1 AT5G14050 62.014 566 184 10 1 555 1 546 0.0 672

Find 125 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGAAGATGCTTTGAATTT+TGG 0.136326 2.3:+2476350 None:intergenic
CTCTACTCCCCTCTTGAATT+TGG 0.174548 2.3:-2477008 MS.gene76511:CDS
ATGGAACTGAACCGAATTAA+TGG 0.250496 2.3:+2476449 None:intergenic
TGAAATCCACTTCAGTATTC+AGG 0.253259 2.3:+2475800 None:intergenic
TAGCCAAAGTTAACAGATTA+AGG 0.262384 2.3:-2476788 MS.gene76511:CDS
GACTGGGCACAGCTTGATTC+AGG 0.267674 2.3:-2476672 MS.gene76511:CDS
CTTAACGTCATCCTCTCTTT+TGG 0.282888 2.3:+2477172 None:intergenic
AAGGCTAGAGTTGATAAAAT+TGG 0.310494 2.3:-2476231 MS.gene76511:CDS
CCGAGAAGTCAGAATCTTCT+TGG 0.315985 2.3:+2476889 None:intergenic
TTAACAGATTAAGGAAGTTA+AGG 0.316539 2.3:-2476779 MS.gene76511:CDS
TCCCCTCTTGAATTTGGAAA+TGG 0.323398 2.3:-2477002 MS.gene76511:CDS
TACAATAGTGAGGAATTTCT+TGG 0.340204 2.3:-2475856 MS.gene76511:CDS
CCAAGAAGATTCTGACTTCT+CGG 0.345962 2.3:-2476889 MS.gene76511:CDS
CTTTGCGAAGAAAGCCGGTT+TGG 0.353761 2.3:-2476845 MS.gene76511:CDS
TTCTAATGGTCCCATTAATT+CGG 0.354772 2.3:-2476460 MS.gene76511:CDS
AGGTTATCAATGGTCTTGAT+AGG 0.358287 2.3:+2475820 None:intergenic
GGTCAGCTGCTTCTTGCTGC+TGG 0.365476 2.3:-2476420 MS.gene76511:CDS
ACTTGTAGATGCAAACATTC+AGG 0.369324 2.3:-2476487 MS.gene76511:CDS
TTTGAAAGAATCTAAGATTC+CGG 0.381602 2.3:+2476391 None:intergenic
GGGTCTCAAGTGATAATATC+TGG 0.385058 2.3:-2476288 MS.gene76511:CDS
CCCCTCTTGAATTTGGAAAT+GGG 0.395309 2.3:-2477001 MS.gene76511:CDS
TGGACTAAAATCAATACAAC+GGG 0.404884 2.3:+2475645 None:intergenic
CTTCCTTAATCTGTTAACTT+TGG 0.410710 2.3:+2476785 None:intergenic
TTTGCGAAGAAAGCCGGTTT+GGG 0.414670 2.3:-2476844 MS.gene76511:CDS
AGATGGAAAGGAAGAACATT+TGG 0.415307 2.3:-2477084 MS.gene76511:CDS
ATGGCTGTAGGAAACGCTTC+AGG 0.416776 2.3:-2475610 MS.gene76511:CDS
GAGGACGAGAATGTGATATC+TGG 0.419714 2.3:-2476750 MS.gene76511:CDS
TTATAGTCTTGATTTAGTTA+AGG 0.420893 2.3:-2476250 MS.gene76511:CDS
TTCGAATGGGGCAATCTTCA+AGG 0.424695 2.3:+2476331 None:intergenic
ACAAAATCAAAGCAATTAGT+TGG 0.426886 2.3:-2476102 MS.gene76511:CDS
ACAATAGTGAGGAATTTCTT+GGG 0.430835 2.3:-2475855 MS.gene76511:CDS
CAAAAGAGAGGATGACGTTA+AGG 0.431319 2.3:-2477171 MS.gene76511:CDS
TGGAACTGAACCGAATTAAT+GGG 0.436701 2.3:+2476450 None:intergenic
GAATTAATGGGACCATTAGA+AGG 0.443632 2.3:+2476462 None:intergenic
TCGGTTCAGTTCCATCGAAA+TGG 0.445521 2.3:-2476441 MS.gene76511:CDS
TTCAGTATTCAGGTTATCAA+TGG 0.445525 2.3:+2475810 None:intergenic
AAGTAATGTTGTTGCGAGCC+GGG 0.448192 2.3:-2476604 MS.gene76511:CDS
AACATTCAGGATCCTTCTAA+TGG 0.448781 2.3:-2476474 MS.gene76511:CDS
TTCTAAAATGATAGCCTTTG+TGG 0.449352 2.3:-2476154 MS.gene76511:CDS
AAATATTAGCAATCTGTTCA+AGG 0.450551 2.3:-2475756 MS.gene76511:CDS
TCTTCCTCATCCACCCAAAC+CGG 0.450796 2.3:+2476831 None:intergenic
TTTGCAGCTGGTTCGGCTAG+TGG 0.463183 2.3:-2475892 MS.gene76511:CDS
CTTAGATTCTTTCAAATCGA+TGG 0.465769 2.3:-2476384 MS.gene76511:CDS
GTAGATGAAGGCTGTTTAAA+CGG 0.466326 2.3:-2475949 MS.gene76511:CDS
GCTGCAAAATGTGTCCCTAC+TGG 0.467974 2.3:+2475907 None:intergenic
CAGATTAAGGAAGTTAAGGA+AGG 0.470846 2.3:-2476775 MS.gene76511:CDS
ACTGACCGTTCTGCTGATAG+TGG 0.477341 2.3:-2476924 MS.gene76511:CDS
TGTTGCGAGCCGGGGTTATG+AGG 0.478638 2.3:-2476595 MS.gene76511:CDS
AAGCATCTTTCTTGCCCGAT+GGG 0.479466 2.3:-2476308 MS.gene76511:CDS
GATGATGAATTGACAGATGA+TGG 0.480610 2.3:-2476627 MS.gene76511:CDS
AGCTCAACCGAGGAACTGAC+TGG 0.481203 2.3:-2476689 MS.gene76511:CDS
GAAGTAATGTTGTTGCGAGC+CGG 0.483388 2.3:-2476605 MS.gene76511:CDS
GTGATGGCCATGTTTACCAT+TGG 0.483908 2.3:-2476005 MS.gene76511:CDS
AAATTGGTCCGCTGTTGGAT+AGG 0.484483 2.3:-2476215 MS.gene76511:CDS
GGAAATGGGGATAACGATGA+AGG 0.486981 2.3:-2476987 MS.gene76511:CDS
AATTGGTCCGCTGTTGGATA+GGG 0.491909 2.3:-2476214 MS.gene76511:CDS
CAGAGTATGTGTCAAGATTG+AGG 0.492768 2.3:-2476725 MS.gene76511:CDS
ACGGTCAGTGAAGAACAAAT+TGG 0.494840 2.3:+2476938 None:intergenic
TGATGGCCATGTTTACCATT+GGG 0.497623 2.3:-2476004 MS.gene76511:CDS
TCTTTCAAATCGATGGCAAA+CGG 0.500797 2.3:-2476377 MS.gene76511:CDS
AAGGAAGTTAAGGAAGGAAG+AGG 0.502686 2.3:-2476769 MS.gene76511:CDS
AAAGAGGAAGCTAGATGGAA+AGG 0.505950 2.3:-2477096 MS.gene76511:CDS
TGATAAAATTGGTCCGCTGT+TGG 0.506211 2.3:-2476220 MS.gene76511:CDS
GGAAGCCTTTGCAGCAGTCA+TGG 0.506331 2.3:+2476959 None:intergenic
AGAGTATGTGTCAAGATTGA+GGG 0.513752 2.3:-2476724 MS.gene76511:CDS
TGATGCTTTGCGAAGAAAGC+CGG 0.516338 2.3:-2476850 MS.gene76511:CDS
ATAGCCTTTGTGGGTGATGA+AGG 0.525756 2.3:-2476144 MS.gene76511:CDS
CCCTACTGGAGAAGTACAAA+GGG 0.526256 2.3:+2475921 None:intergenic
AAAGCCGGTTTGGGTGGATG+AGG 0.539602 2.3:-2476835 MS.gene76511:CDS
TTTCTAATCTACTTTAGGCA+TGG 0.540589 2.3:+2475554 None:intergenic
TCTCAGAACAAATGAAGACT+TGG 0.543934 2.3:-2476559 MS.gene76511:CDS
CCCTCTTGAATTTGGAAATG+GGG 0.544010 2.3:-2477000 MS.gene76511:CDS
GAGCCGGGGTTATGAGGATC+TGG 0.545404 2.3:-2476589 MS.gene76511:CDS
ACTGGGCACAGCTTGATTCA+GGG 0.545660 2.3:-2476671 MS.gene76511:CDS
GGAAGCCATGACTGCTGCAA+AGG 0.547123 2.3:-2476964 MS.gene76511:CDS
CCCCATTTCCAAATTCAAGA+GGG 0.548968 2.3:+2477000 None:intergenic
GTAAACATGGCCATCACCAC+CGG 0.549474 2.3:+2476011 None:intergenic
CAATACAACGGGGATAATGC+AGG 0.553209 2.3:+2475656 None:intergenic
TTCTTGCTGCTGGATTAGAC+CGG 0.554524 2.3:-2476410 MS.gene76511:CDS
TGTGAATATTTACAATAGTG+AGG 0.554925 2.3:-2475866 MS.gene76511:CDS
CAATAGTGAGGAATTTCTTG+GGG 0.554998 2.3:-2475854 MS.gene76511:CDS
AAAGCATCTTTCTTGCCCGA+TGG 0.557386 2.3:-2476309 MS.gene76511:CDS
GAAGATTCTGACTTCTCGGA+TGG 0.559324 2.3:-2476885 MS.gene76511:CDS
TTGTTGAGCACCGGTGGTGA+TGG 0.564654 2.3:-2476021 MS.gene76511:CDS
TCTAAAATGATAGCCTTTGT+GGG 0.566464 2.3:-2476153 MS.gene76511:CDS
CCCTTTGTACTTCTCCAGTA+GGG 0.569388 2.3:-2475921 MS.gene76511:CDS
GCGAAGAAAGCCGGTTTGGG+TGG 0.571477 2.3:-2476841 MS.gene76511:CDS
GCCCTTTGTACTTCTCCAGT+AGG 0.573251 2.3:-2475922 MS.gene76511:CDS
TGATAACCTGAATACTGAAG+TGG 0.580415 2.3:-2475806 MS.gene76511:CDS
GGACAAAAGTTGTTGAGCAC+CGG 0.580640 2.3:-2476030 MS.gene76511:CDS
ATTATCACTTGAGACCCATC+GGG 0.584332 2.3:+2476294 None:intergenic
TATTATCACTTGAGACCCAT+CGG 0.587218 2.3:+2476293 None:intergenic
GCTGTGCCCAGTCAGTTCCT+CGG 0.588930 2.3:+2476682 None:intergenic
GAAATGGGGATAACGATGAA+GGG 0.589801 2.3:-2476986 MS.gene76511:CDS
CTTCAGTAAAAGCTAACGCA+CGG 0.597212 2.3:+2476055 None:intergenic
AGTAATGTTGTTGCGAGCCG+GGG 0.597573 2.3:-2476603 MS.gene76511:CDS
GAAGCAGCTGACCATTTCGA+TGG 0.604108 2.3:+2476430 None:intergenic
TCCCCATTTCCAAATTCAAG+AGG 0.605102 2.3:+2476999 None:intergenic
TCAGATCCCAATGGTAAACA+TGG 0.606421 2.3:+2475998 None:intergenic
TTCAGTAAAAGCTAACGCAC+GGG 0.612384 2.3:+2476056 None:intergenic
AGCAGCTCAAAATTGTTGCT+AGG 0.618852 2.3:-2476528 MS.gene76511:CDS
TCCCTACTGGAGAAGTACAA+AGG 0.621550 2.3:+2475920 None:intergenic
CTGGACTAAAATCAATACAA+CGG 0.621707 2.3:+2475644 None:intergenic
ACCATTGGGATCTGAGAACA+AGG 0.624102 2.3:-2475990 MS.gene76511:CDS
CCCATTTCCAAATTCAAGAG+GGG 0.625050 2.3:+2477001 None:intergenic
TAGAAATGAGACCAAAAGAG+AGG 0.629102 2.3:-2477183 MS.gene76511:CDS
GCTCAACCGAGGAACTGACT+GGG 0.636934 2.3:-2476688 MS.gene76511:CDS
CCAGTTAGAGAAAACAGTGT+AGG 0.639938 2.3:+2475696 None:intergenic
GTTGGTACTCTGAAGATGAA+CGG 0.640176 2.3:-2476084 MS.gene76511:CDS
TTAGAGAAAACAGTGTAGGA+TGG 0.640295 2.3:+2475700 None:intergenic
CATCCAGATCCTCATAACCC+CGG 0.640892 2.3:+2476586 None:intergenic
TGCAGGCTCGCATTTGAACG+CGG 0.645712 2.3:+2475673 None:intergenic
ACAGCCATAAAACCACCACC+TGG 0.646807 2.3:+2475625 None:intergenic
ATAACCTTCATCACCCACAA+AGG 0.647464 2.3:+2476140 None:intergenic
AAATGGGGATAACGATGAAG+GGG 0.648646 2.3:-2476985 MS.gene76511:CDS
CAAAAGTTGTTGAGCACCGG+TGG 0.649375 2.3:-2476027 MS.gene76511:CDS
AATAGTGAGGAATTTCTTGG+GGG 0.659821 2.3:-2475853 MS.gene76511:CDS
ATGCACAAAGGTGTAGATGA+AGG 0.661644 2.3:-2475961 MS.gene76511:CDS
TTCTCTTCCCTATCCAACAG+CGG 0.664935 2.3:+2476207 None:intergenic
AATCTTCTTGGTAAACAGTG+AGG 0.688434 2.3:+2476901 None:intergenic
TGAGGCCACTATCAGCAGAA+CGG 0.695939 2.3:+2476919 None:intergenic
CAACATGTGAAGCTCAACCG+AGG 0.705882 2.3:-2476699 MS.gene76511:CDS
ACAAGGACTTGTATGCACAA+AGG 0.714733 2.3:-2475973 MS.gene76511:CDS
TCCTTGTTCTCAGATCCCAA+TGG 0.719029 2.3:+2475989 None:intergenic
GGACTAAAATCAATACAACG+GGG 0.796660 2.3:+2475646 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAGTCTTGATTTAGTTA+AGG - chr2.3:2476529-2476548 MS.gene76511:CDS 20.0%
! AAATATTAGCAATCTGTTCA+AGG - chr2.3:2477023-2477042 MS.gene76511:CDS 25.0%
! ACAAAATCAAAGCAATTAGT+TGG - chr2.3:2476677-2476696 MS.gene76511:CDS 25.0%
! TGTGAATATTTACAATAGTG+AGG - chr2.3:2476913-2476932 MS.gene76511:CDS 25.0%
! TTAACAGATTAAGGAAGTTA+AGG - chr2.3:2476000-2476019 MS.gene76511:CDS 25.0%
!! AAACTTGAAAGCTTTTTGTT+TGG - chr2.3:2475744-2475763 MS.gene76511:CDS 25.0%
!! TGATGAAGGTTATATTTTAC+TGG - chr2.3:2476649-2476668 MS.gene76511:CDS 25.0%
!! TTTGAAAGAATCTAAGATTC+CGG + chr2.3:2476391-2476410 None:intergenic 25.0%
!!! AACTTGAAAGCTTTTTGTTT+GGG - chr2.3:2475745-2475764 MS.gene76511:CDS 25.0%
AAGGAAAAAGAAGTTGAAGA+TGG - chr2.3:2475627-2475646 MS.gene76511:CDS 30.0%
ACAATAGTGAGGAATTTCTT+GGG - chr2.3:2476924-2476943 MS.gene76511:CDS 30.0%
CTGGACTAAAATCAATACAA+CGG + chr2.3:2477138-2477157 None:intergenic 30.0%
CTTAGATTCTTTCAAATCGA+TGG - chr2.3:2476395-2476414 MS.gene76511:CDS 30.0%
CTTCCTTAATCTGTTAACTT+TGG + chr2.3:2475997-2476016 None:intergenic 30.0%
TACAATAGTGAGGAATTTCT+TGG - chr2.3:2476923-2476942 MS.gene76511:CDS 30.0%
TAGCCAAAGTTAACAGATTA+AGG - chr2.3:2475991-2476010 MS.gene76511:CDS 30.0%
TGGACTAAAATCAATACAAC+GGG + chr2.3:2477137-2477156 None:intergenic 30.0%
TTCTAATGGTCCCATTAATT+CGG - chr2.3:2476319-2476338 MS.gene76511:CDS 30.0%
! AAGAAAGATGCTTTTCGAAT+GGG + chr2.3:2476464-2476483 None:intergenic 30.0%
! TCTAAAATGATAGCCTTTGT+GGG - chr2.3:2476626-2476645 MS.gene76511:CDS 30.0%
! TTCAGTATTCAGGTTATCAA+TGG + chr2.3:2476972-2476991 None:intergenic 30.0%
!! AAGGAAGATGCTTTGAATTT+TGG + chr2.3:2476432-2476451 None:intergenic 30.0%
!! AAGGCTAGAGTTGATAAAAT+TGG - chr2.3:2476548-2476567 MS.gene76511:CDS 30.0%
!! TTCTAAAATGATAGCCTTTG+TGG - chr2.3:2476625-2476644 MS.gene76511:CDS 30.0%
!!! AAGGCTATCATTTTAGAATC+AGG + chr2.3:2476623-2476642 None:intergenic 30.0%
!!! GAAGAGTATTGAAGTTTTTG+AGG - chr2.3:2476592-2476611 MS.gene76511:CDS 30.0%
AACATTCAGGATCCTTCTAA+TGG - chr2.3:2476305-2476324 MS.gene76511:CDS 35.0%
AATAGTGAGGAATTTCTTGG+GGG - chr2.3:2476926-2476945 MS.gene76511:CDS 35.0%
AATCTTCTTGGTAAACAGTG+AGG + chr2.3:2475881-2475900 None:intergenic 35.0%
ACTTGTAGATGCAAACATTC+AGG - chr2.3:2476292-2476311 MS.gene76511:CDS 35.0%
AGAGTATGTGTCAAGATTGA+GGG - chr2.3:2476055-2476074 MS.gene76511:CDS 35.0%
AGATGGAAAGGAAGAACATT+TGG - chr2.3:2475695-2475714 MS.gene76511:CDS 35.0%
ATACCGTAGAAGTGAAAAAG+AGG - chr2.3:2475667-2475686 MS.gene76511:CDS 35.0%
ATGGAACTGAACCGAATTAA+TGG + chr2.3:2476333-2476352 None:intergenic 35.0%
CAATAGTGAGGAATTTCTTG+GGG - chr2.3:2476925-2476944 MS.gene76511:CDS 35.0%
CAGATTAAGGAAGTTAAGGA+AGG - chr2.3:2476004-2476023 MS.gene76511:CDS 35.0%
GAATTAATGGGACCATTAGA+AGG + chr2.3:2476320-2476339 None:intergenic 35.0%
GATGATGAATTGACAGATGA+TGG - chr2.3:2476152-2476171 MS.gene76511:CDS 35.0%
GGACTAAAATCAATACAACG+GGG + chr2.3:2477136-2477155 None:intergenic 35.0%
GTAGATGAAGGCTGTTTAAA+CGG - chr2.3:2476830-2476849 MS.gene76511:CDS 35.0%
TAGAAATGAGACCAAAAGAG+AGG - chr2.3:2475596-2475615 MS.gene76511:CDS 35.0%
TATTATCACTTGAGACCCAT+CGG + chr2.3:2476489-2476508 None:intergenic 35.0%
TCTCAGAACAAATGAAGACT+TGG - chr2.3:2476220-2476239 MS.gene76511:CDS 35.0%
TCTTTCAAATCGATGGCAAA+CGG - chr2.3:2476402-2476421 MS.gene76511:CDS 35.0%
TGAAATCCACTTCAGTATTC+AGG + chr2.3:2476982-2477001 None:intergenic 35.0%
TGATAACCTGAATACTGAAG+TGG - chr2.3:2476973-2476992 MS.gene76511:CDS 35.0%
TGGAACTGAACCGAATTAAT+GGG + chr2.3:2476332-2476351 None:intergenic 35.0%
TTAGAGAAAACAGTGTAGGA+TGG + chr2.3:2477082-2477101 None:intergenic 35.0%
! AGAAAGATGCTTTTCGAATG+GGG + chr2.3:2476463-2476482 None:intergenic 35.0%
! AGGTTATCAATGGTCTTGAT+AGG + chr2.3:2476962-2476981 None:intergenic 35.0%
! CAAGAAAGATGCTTTTCGAA+TGG + chr2.3:2476465-2476484 None:intergenic 35.0%
!! CTTCCTCTTTTTCACTTCTA+CGG + chr2.3:2475673-2475692 None:intergenic 35.0%
!!! CGTTGTATTGATTTTAGTCC+AGG - chr2.3:2477136-2477155 MS.gene76511:CDS 35.0%
!!! TGTATTGATTTTAGTCCAGG+TGG - chr2.3:2477139-2477158 MS.gene76511:CDS 35.0%
AAAGAGGAAGCTAGATGGAA+AGG - chr2.3:2475683-2475702 MS.gene76511:CDS 40.0%
AAATGGGGATAACGATGAAG+GGG - chr2.3:2475794-2475813 MS.gene76511:CDS 40.0%
AAGGAAGTTAAGGAAGGAAG+AGG - chr2.3:2476010-2476029 MS.gene76511:CDS 40.0%
ACAAGGACTTGTATGCACAA+AGG - chr2.3:2476806-2476825 MS.gene76511:CDS 40.0%
ACGGTCAGTGAAGAACAAAT+TGG + chr2.3:2475844-2475863 None:intergenic 40.0%
AGCAGCTCAAAATTGTTGCT+AGG - chr2.3:2476251-2476270 MS.gene76511:CDS 40.0%
ATAACCTTCATCACCCACAA+AGG + chr2.3:2476642-2476661 None:intergenic 40.0%
ATTATCACTTGAGACCCATC+GGG + chr2.3:2476488-2476507 None:intergenic 40.0%
CAAAAGAGAGGATGACGTTA+AGG - chr2.3:2475608-2475627 MS.gene76511:CDS 40.0%
CAGAGTATGTGTCAAGATTG+AGG - chr2.3:2476054-2476073 MS.gene76511:CDS 40.0%
CCAAGAAGATTCTGACTTCT+CGG - chr2.3:2475890-2475909 MS.gene76511:CDS 40.0%
CCAGTTAGAGAAAACAGTGT+AGG + chr2.3:2477086-2477105 None:intergenic 40.0%
CCCATTTCCAAATTCAAGAG+GGG + chr2.3:2475781-2475800 None:intergenic 40.0%
CCCCATTTCCAAATTCAAGA+GGG + chr2.3:2475782-2475801 None:intergenic 40.0%
CCCCTCTTGAATTTGGAAAT+GGG - chr2.3:2475778-2475797 MS.gene76511:CDS 40.0%
CCCTCTTGAATTTGGAAATG+GGG - chr2.3:2475779-2475798 MS.gene76511:CDS 40.0%
CTTCAGTAAAAGCTAACGCA+CGG + chr2.3:2476727-2476746 None:intergenic 40.0%
GAAATGGGGATAACGATGAA+GGG - chr2.3:2475793-2475812 MS.gene76511:CDS 40.0%
GATTCAGGGTCAAAAATGGA+TGG - chr2.3:2476122-2476141 MS.gene76511:CDS 40.0%
GCTTGATTCAGGGTCAAAAA+TGG - chr2.3:2476118-2476137 MS.gene76511:CDS 40.0%
GGGTCTCAAGTGATAATATC+TGG - chr2.3:2476491-2476510 MS.gene76511:CDS 40.0%
GTGAAAAAGAGGAAGCTAGA+TGG - chr2.3:2475678-2475697 MS.gene76511:CDS 40.0%
TCAGATCCCAATGGTAAACA+TGG + chr2.3:2476784-2476803 None:intergenic 40.0%
TCCCCATTTCCAAATTCAAG+AGG + chr2.3:2475783-2475802 None:intergenic 40.0%
TCCCCTCTTGAATTTGGAAA+TGG - chr2.3:2475777-2475796 MS.gene76511:CDS 40.0%
TGATAAAATTGGTCCGCTGT+TGG - chr2.3:2476559-2476578 MS.gene76511:CDS 40.0%
TGATGGCCATGTTTACCATT+GGG - chr2.3:2476775-2476794 MS.gene76511:CDS 40.0%
TTCAGTAAAAGCTAACGCAC+GGG + chr2.3:2476726-2476745 None:intergenic 40.0%
! ATGCACAAAGGTGTAGATGA+AGG - chr2.3:2476818-2476837 MS.gene76511:CDS 40.0%
! CCTACACTGTTTTCTCTAAC+TGG - chr2.3:2477083-2477102 MS.gene76511:CDS 40.0%
! CTTAACGTCATCCTCTCTTT+TGG + chr2.3:2475610-2475629 None:intergenic 40.0%
! GTTGGTACTCTGAAGATGAA+CGG - chr2.3:2476695-2476714 MS.gene76511:CDS 40.0%
!! ATTGATTTTAGTCCAGGTGG+TGG - chr2.3:2477142-2477161 MS.gene76511:CDS 40.0%
!!! GCGTTAGCTTTTACTGAAGA+TGG - chr2.3:2476728-2476747 MS.gene76511:CDS 40.0%
AAATTGGTCCGCTGTTGGAT+AGG - chr2.3:2476564-2476583 MS.gene76511:CDS 45.0%
AAGCATCTTTCTTGCCCGAT+GGG - chr2.3:2476471-2476490 MS.gene76511:CDS 45.0%
AAGTAATGTTGTTGCGAGCC+GGG - chr2.3:2476175-2476194 MS.gene76511:CDS 45.0%
AATTGGTCCGCTGTTGGATA+GGG - chr2.3:2476565-2476584 MS.gene76511:CDS 45.0%
ACCATTGGGATCTGAGAACA+AGG - chr2.3:2476789-2476808 MS.gene76511:CDS 45.0%
ATAGCCTTTGTGGGTGATGA+AGG - chr2.3:2476635-2476654 MS.gene76511:CDS 45.0%
CAATACAACGGGGATAATGC+AGG + chr2.3:2477126-2477145 None:intergenic 45.0%
CCCTTTGTACTTCTCCAGTA+GGG - chr2.3:2476858-2476877 MS.gene76511:CDS 45.0%
CCGAGAAGTCAGAATCTTCT+TGG + chr2.3:2475893-2475912 None:intergenic 45.0%
CTCTACTCCCCTCTTGAATT+TGG - chr2.3:2475771-2475790 MS.gene76511:CDS 45.0%
GAAGATTCTGACTTCTCGGA+TGG - chr2.3:2475894-2475913 MS.gene76511:CDS 45.0%
GAAGTAATGTTGTTGCGAGC+CGG - chr2.3:2476174-2476193 MS.gene76511:CDS 45.0%
GAGGACGAGAATGTGATATC+TGG - chr2.3:2476029-2476048 MS.gene76511:CDS 45.0%
GGAAATGGGGATAACGATGA+AGG - chr2.3:2475792-2475811 MS.gene76511:CDS 45.0%
GGACAAAAGTTGTTGAGCAC+CGG - chr2.3:2476749-2476768 MS.gene76511:CDS 45.0%
GTGATGGCCATGTTTACCAT+TGG - chr2.3:2476774-2476793 MS.gene76511:CDS 45.0%
TCCTTGTTCTCAGATCCCAA+TGG + chr2.3:2476793-2476812 None:intergenic 45.0%
TCGGTTCAGTTCCATCGAAA+TGG - chr2.3:2476338-2476357 MS.gene76511:CDS 45.0%
TGATGCTTTGCGAAGAAAGC+CGG - chr2.3:2475929-2475948 MS.gene76511:CDS 45.0%
TTCGAATGGGGCAATCTTCA+AGG + chr2.3:2476451-2476470 None:intergenic 45.0%
TTCTCTTCCCTATCCAACAG+CGG + chr2.3:2476575-2476594 None:intergenic 45.0%
! AAAGCATCTTTCTTGCCCGA+TGG - chr2.3:2476470-2476489 MS.gene76511:CDS 45.0%
! CCCTACTGGAGAAGTACAAA+GGG + chr2.3:2476861-2476880 None:intergenic 45.0%
! GACACATTTTGCAGCTGGTT+CGG - chr2.3:2476880-2476899 MS.gene76511:CDS 45.0%
! TCCCTACTGGAGAAGTACAA+AGG + chr2.3:2476862-2476881 None:intergenic 45.0%
! TTCTTGCTGCTGGATTAGAC+CGG - chr2.3:2476369-2476388 MS.gene76511:CDS 45.0%
! TTTGCGAAGAAAGCCGGTTT+GGG - chr2.3:2475935-2475954 MS.gene76511:CDS 45.0%
!! TAGTCCAGGTGGTGGTTTTA+TGG - chr2.3:2477150-2477169 MS.gene76511:CDS 45.0%
ACAGCCATAAAACCACCACC+TGG + chr2.3:2477157-2477176 None:intergenic 50.0%
ACTGACCGTTCTGCTGATAG+TGG - chr2.3:2475855-2475874 MS.gene76511:CDS 50.0%
ACTGGGCACAGCTTGATTCA+GGG - chr2.3:2476108-2476127 MS.gene76511:CDS 50.0%
AGTAATGTTGTTGCGAGCCG+GGG - chr2.3:2476176-2476195 MS.gene76511:CDS 50.0%
ATGGCTGTAGGAAACGCTTC+AGG - chr2.3:2477169-2477188 MS.gene76511:CDS 50.0%
CAACATGTGAAGCTCAACCG+AGG - chr2.3:2476080-2476099 MS.gene76511:CDS 50.0%
CATCCAGATCCTCATAACCC+CGG + chr2.3:2476196-2476215 None:intergenic 50.0%
CTTTGCGAAGAAAGCCGGTT+TGG - chr2.3:2475934-2475953 MS.gene76511:CDS 50.0%
GAAGCAGCTGACCATTTCGA+TGG + chr2.3:2476352-2476371 None:intergenic 50.0%
GCCCTTTGTACTTCTCCAGT+AGG - chr2.3:2476857-2476876 MS.gene76511:CDS 50.0%
GCTGCAAAATGTGTCCCTAC+TGG + chr2.3:2476875-2476894 None:intergenic 50.0%
GTAAACATGGCCATCACCAC+CGG + chr2.3:2476771-2476790 None:intergenic 50.0%
TCTTCCTCATCCACCCAAAC+CGG + chr2.3:2475951-2475970 None:intergenic 50.0%
TGAGGCCACTATCAGCAGAA+CGG + chr2.3:2475863-2475882 None:intergenic 50.0%
! GTAGGGACACATTTTGCAGC+TGG - chr2.3:2476875-2476894 MS.gene76511:CDS 50.0%
!! CAAAAGTTGTTGAGCACCGG+TGG - chr2.3:2476752-2476771 MS.gene76511:CDS 50.0%
!!! GGTGGTGGTTTTATGGCTGT+AGG - chr2.3:2477157-2477176 MS.gene76511:CDS 50.0%
AGCTCAACCGAGGAACTGAC+TGG - chr2.3:2476090-2476109 MS.gene76511:CDS 55.0%
GACTGGGCACAGCTTGATTC+AGG - chr2.3:2476107-2476126 MS.gene76511:CDS 55.0%
GCTCAACCGAGGAACTGACT+GGG - chr2.3:2476091-2476110 MS.gene76511:CDS 55.0%
GGAAGCCATGACTGCTGCAA+AGG - chr2.3:2475815-2475834 MS.gene76511:CDS 55.0%
GGAAGCCTTTGCAGCAGTCA+TGG + chr2.3:2475823-2475842 None:intergenic 55.0%
TGCAGGCTCGCATTTGAACG+CGG + chr2.3:2477109-2477128 None:intergenic 55.0%
!! AAAGCCGGTTTGGGTGGATG+AGG - chr2.3:2475944-2475963 MS.gene76511:CDS 55.0%
!! TTGTTGAGCACCGGTGGTGA+TGG - chr2.3:2476758-2476777 MS.gene76511:CDS 55.0%
!! TTTGCAGCTGGTTCGGCTAG+TGG - chr2.3:2476887-2476906 MS.gene76511:CDS 55.0%
GAGCCGGGGTTATGAGGATC+TGG - chr2.3:2476190-2476209 MS.gene76511:CDS 60.0%
GCTGTGCCCAGTCAGTTCCT+CGG + chr2.3:2476100-2476119 None:intergenic 60.0%
GGTCAGCTGCTTCTTGCTGC+TGG - chr2.3:2476359-2476378 MS.gene76511:CDS 60.0%
TGTTGCGAGCCGGGGTTATG+AGG - chr2.3:2476184-2476203 MS.gene76511:CDS 60.0%
!! GCGAAGAAAGCCGGTTTGGG+TGG - chr2.3:2475938-2475957 MS.gene76511:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 2475567 2477234 2475567 ID=MS.gene76511
chr2.3 mRNA 2475567 2477234 2475567 ID=MS.gene76511.t1;Parent=MS.gene76511
chr2.3 exon 2475567 2477234 2475567 ID=MS.gene76511.t1.exon1;Parent=MS.gene76511.t1
chr2.3 CDS 2475567 2477234 2475567 ID=cds.MS.gene76511.t1;Parent=MS.gene76511.t1
Gene Sequence

>MS.gene76511

ATGAGTTTAATATCTCAAAATGCTCGCTCTAGAAATGAGACCAAAAGAGAGGATGACGTTAAGGAAAAAGAAGTTGAAGATGGTCAAGATAATGATGTTGATACCGTAGAAGTGAAAAAGAGGAAGCTAGATGGAAAGGAAGAACATTTGGCAAAAGAACAAGTTAAAGAGATGAAAAAACTTGAAAGCTTTTTGTTTGGGTCTCTCTACTCCCCTCTTGAATTTGGAAATGGGGATAACGATGAAGGGGAAGCCATGACTGCTGCAAAGGCTTCCAATTTGTTCTTCACTGACCGTTCTGCTGATAGTGGCCTCACTGTTTACCAAGAAGATTCTGACTTCTCGGATGGAAGTTGTGATGATGATGCTTTGCGAAGAAAGCCGGTTTGGGTGGATGAGGAAGAAGAGAAAGTCACTGTTAACATAGCCAAAGTTAACAGATTAAGGAAGTTAAGGAAGGAAGAGGACGAGAATGTGATATCTGGTTCAGAGTATGTGTCAAGATTGAGGGCTCAACATGTGAAGCTCAACCGAGGAACTGACTGGGCACAGCTTGATTCAGGGTCAAAAATGGATGGATCTTCTGATGATGAATTGACAGATGATGGAAGTAATGTTGTTGCGAGCCGGGGTTATGAGGATCTGGATGATATTCTCAGAACAAATGAAGACTTGGTTGTGAAGAGCAGCTCAAAATTGTTGCTAGGTCATATTGAATACTCGAAACTTGTAGATGCAAACATTCAGGATCCTTCTAATGGTCCCATTAATTCGGTTCAGTTCCATCGAAATGGTCAGCTGCTTCTTGCTGCTGGATTAGACCGGAATCTTAGATTCTTTCAAATCGATGGCAAACGGAACACCAAAATTCAAAGCATCTTCCTTGAAGATTGCCCCATTCGAAAAGCATCTTTCTTGCCCGATGGGTCTCAAGTGATAATATCTGGAAGAAGAAAGTTCTTTTATAGTCTTGATTTAGTTAAGGCTAGAGTTGATAAAATTGGTCCGCTGTTGGATAGGGAAGAGAAGAGTATTGAAGTTTTTGAGGTCTCTCCTGATTCTAAAATGATAGCCTTTGTGGGTGATGAAGGTTATATTTTACTGGTTTCAACAAAATCAAAGCAATTAGTTGGTACTCTGAAGATGAACGGAACAGCCCGTGCGTTAGCTTTTACTGAAGATGGACAAAAGTTGTTGAGCACCGGTGGTGATGGCCATGTTTACCATTGGGATCTGAGAACAAGGACTTGTATGCACAAAGGTGTAGATGAAGGCTGTTTAAACGGCACAGCCCTTTGTACTTCTCCAGTAGGGACACATTTTGCAGCTGGTTCGGCTAGTGGAGTTGTGAATATTTACAATAGTGAGGAATTTCTTGGGGGAAAGAGAAAACCTATCAAGACCATTGATAACCTGAATACTGAAGTGGATTTCATGAAATTTAATCATGACTCTCAAATATTAGCAATCTGTTCAAGGTCAAAGAATAGTAGTTTGAAATTAATACATATACCATCCTACACTGTTTTCTCTAACTGGCCGCGTTCAAATGCGAGCCTGCATTATCCCCGTTGTATTGATTTTAGTCCAGGTGGTGGTTTTATGGCTGTAGGAAACGCTTCAGGCAAAGTGTTACTATATAAGTTGCATCATTATCACCATGCCTAA
Protein sequence

>MS.gene76511.t1

MSLISQNARSRNETKREDDVKEKEVEDGQDNDVDTVEVKKRKLDGKEEHLAKEQVKEMKKLESFLFGSLYSPLEFGNGDNDEGEAMTAAKASNLFFTDRSADSGLTVYQEDSDFSDGSCDDDALRRKPVWVDEEEEKVTVNIAKVNRLRKLRKEEDENVISGSEYVSRLRAQHVKLNRGTDWAQLDSGSKMDGSSDDELTDDGSNVVASRGYEDLDDILRTNEDLVVKSSSKLLLGHIEYSKLVDANIQDPSNGPINSVQFHRNGQLLLAAGLDRNLRFFQIDGKRNTKIQSIFLEDCPIRKASFLPDGSQVIISGRRKFFYSLDLVKARVDKIGPLLDREEKSIEVFEVSPDSKMIAFVGDEGYILLVSTKSKQLVGTLKMNGTARALAFTEDGQKLLSTGGDGHVYHWDLRTRTCMHKGVDEGCLNGTALCTSPVGTHFAAGSASGVVNIYNSEEFLGGKRKPIKTIDNLNTEVDFMKFNHDSQILAICSRSKNSSLKLIHIPSYTVFSNWPRSNASLHYPRCIDFSPGGGFMAVGNASGKVLLYKLHHYHHA