Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54921.t1 | PNX72174.1 | 76.3 | 422 | 44 | 1 | 1 | 366 | 1 | 422 | 1.20E-182 | 649.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54921.t1 | Q9SY66 | 42.5 | 478 | 197 | 3 | 13 | 413 | 140 | 616 | 2.9e-105 | 383.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54921.t1 | A0A2K3L0W0 | 76.3 | 422 | 44 | 1 | 1 | 366 | 1 | 422 | 8.5e-183 | 649.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene54921 | 0.840614 | 7.82E-58 | -1.69E-46 |
| MS.gene049853 | MS.gene54921 | 0.860554 | 1.90E-63 | -1.69E-46 |
| MS.gene051575 | MS.gene54921 | 0.811823 | 5.77E-51 | -1.69E-46 |
| MS.gene052447 | MS.gene54921 | 0.817512 | 3.17E-52 | -1.69E-46 |
| MS.gene053974 | MS.gene54921 | 0.816476 | 5.42E-52 | -1.69E-46 |
| MS.gene054484 | MS.gene54921 | 0.803689 | 3.09E-49 | -1.69E-46 |
| MS.gene055017 | MS.gene54921 | 0.821628 | 3.65E-53 | -1.69E-46 |
| MS.gene055056 | MS.gene54921 | 0.839073 | 1.97E-57 | -1.69E-46 |
| MS.gene055058 | MS.gene54921 | 0.829619 | 4.65E-55 | -1.69E-46 |
| MS.gene05531 | MS.gene54921 | 0.833073 | 6.58E-56 | -1.69E-46 |
| MS.gene05762 | MS.gene54921 | 0.818891 | 1.55E-52 | -1.69E-46 |
| MS.gene058515 | MS.gene54921 | 0.82124 | 4.48E-53 | -1.69E-46 |
| MS.gene058580 | MS.gene54921 | 0.810329 | 1.22E-50 | -1.69E-46 |
| MS.gene05925 | MS.gene54921 | 0.814389 | 1.58E-51 | -1.69E-46 |
| MS.gene059276 | MS.gene54921 | 0.853485 | 2.32E-61 | -1.69E-46 |
| MS.gene059458 | MS.gene54921 | 0.818547 | 1.85E-52 | -1.69E-46 |
| MS.gene059459 | MS.gene54921 | 0.816291 | 5.96E-52 | -1.69E-46 |
| MS.gene059460 | MS.gene54921 | 0.801432 | 9.03E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene54921 | 0.802008 | 6.88E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54921.t1 | MTR_3g095940 | 90.741 | 54 | 5 | 0 | 313 | 366 | 90 | 143 | 2.61e-27 | 106 |
| MS.gene54921.t1 | MTR_3g450850 | 42.581 | 155 | 33 | 4 | 1 | 99 | 132 | 286 | 5.18e-24 | 102 |
| MS.gene54921.t1 | MTR_3g012160 | 84.211 | 57 | 7 | 1 | 46 | 100 | 37 | 93 | 9.51e-24 | 95.1 |
| MS.gene54921.t1 | MTR_4g035820 | 47.917 | 96 | 50 | 0 | 248 | 343 | 326 | 421 | 2.12e-20 | 94.4 |
| MS.gene54921.t1 | MTR_4g035820 | 32.099 | 162 | 54 | 3 | 10 | 115 | 163 | 324 | 2.41e-16 | 82.0 |
| MS.gene54921.t1 | MTR_6g051425 | 43.158 | 95 | 53 | 1 | 47 | 140 | 197 | 291 | 2.51e-15 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54921.t1 | AT1G10240 | 42.887 | 478 | 195 | 4 | 13 | 413 | 140 | 616 | 6.58e-131 | 393 |
| MS.gene54921.t1 | AT1G10240 | 42.887 | 478 | 195 | 4 | 13 | 413 | 140 | 616 | 6.58e-131 | 393 |
| MS.gene54921.t1 | AT5G28530 | 40.793 | 353 | 180 | 3 | 53 | 384 | 253 | 597 | 4.45e-91 | 290 |
| MS.gene54921.t1 | AT5G28530 | 40.793 | 353 | 180 | 3 | 53 | 384 | 253 | 597 | 4.45e-91 | 290 |
| MS.gene54921.t1 | AT5G28530 | 40.510 | 353 | 185 | 3 | 53 | 384 | 253 | 601 | 2.41e-90 | 288 |
| MS.gene54921.t1 | AT5G28530 | 36.524 | 397 | 218 | 4 | 14 | 384 | 146 | 534 | 8.61e-80 | 259 |
| MS.gene54921.t1 | AT5G28530 | 36.272 | 397 | 223 | 4 | 14 | 384 | 146 | 538 | 5.15e-79 | 257 |
| MS.gene54921.t1 | AT4G38180 | 29.484 | 407 | 246 | 5 | 4 | 384 | 223 | 614 | 8.18e-52 | 186 |
| MS.gene54921.t1 | AT4G15090 | 28.256 | 453 | 243 | 9 | 13 | 384 | 138 | 589 | 3.33e-51 | 185 |
| MS.gene54921.t1 | AT4G15090 | 28.256 | 453 | 243 | 9 | 13 | 384 | 138 | 589 | 3.33e-51 | 185 |
| MS.gene54921.t1 | AT4G15090 | 28.256 | 453 | 243 | 9 | 13 | 384 | 138 | 589 | 3.33e-51 | 185 |
| MS.gene54921.t1 | AT4G15090 | 28.256 | 453 | 243 | 9 | 13 | 384 | 138 | 589 | 3.33e-51 | 185 |
| MS.gene54921.t1 | AT4G15090 | 28.256 | 453 | 243 | 9 | 13 | 384 | 138 | 589 | 3.33e-51 | 185 |
| MS.gene54921.t1 | AT3G22170 | 27.378 | 431 | 248 | 11 | 13 | 382 | 170 | 596 | 3.06e-46 | 171 |
| MS.gene54921.t1 | AT3G22170 | 27.378 | 431 | 248 | 11 | 13 | 382 | 170 | 596 | 3.06e-46 | 171 |
| MS.gene54921.t1 | AT1G76320 | 26.292 | 445 | 256 | 7 | 13 | 385 | 81 | 525 | 3.98e-44 | 164 |
| MS.gene54921.t1 | AT1G76320 | 26.292 | 445 | 256 | 7 | 13 | 385 | 81 | 525 | 9.19e-44 | 163 |
| MS.gene54921.t1 | AT1G76320 | 26.292 | 445 | 256 | 7 | 13 | 385 | 81 | 525 | 9.77e-44 | 163 |
| MS.gene54921.t1 | AT1G76320 | 26.292 | 445 | 256 | 7 | 13 | 385 | 81 | 525 | 9.77e-44 | 163 |
| MS.gene54921.t1 | AT2G27110 | 28.045 | 353 | 223 | 6 | 59 | 384 | 66 | 414 | 4.76e-39 | 150 |
| MS.gene54921.t1 | AT2G27110 | 28.045 | 353 | 223 | 6 | 59 | 384 | 211 | 559 | 1.34e-38 | 149 |
| MS.gene54921.t1 | AT2G27110 | 28.045 | 353 | 223 | 6 | 59 | 384 | 211 | 559 | 1.34e-38 | 149 |
| MS.gene54921.t1 | AT2G32250 | 25.429 | 350 | 243 | 4 | 11 | 343 | 120 | 468 | 1.26e-37 | 146 |
| MS.gene54921.t1 | AT2G32250 | 25.429 | 350 | 243 | 4 | 11 | 343 | 79 | 427 | 1.40e-37 | 145 |
| MS.gene54921.t1 | AT2G32250 | 25.429 | 350 | 243 | 4 | 11 | 343 | 79 | 427 | 1.42e-37 | 145 |
| MS.gene54921.t1 | AT2G32250 | 25.429 | 350 | 243 | 4 | 11 | 343 | 120 | 468 | 1.82e-37 | 145 |
| MS.gene54921.t1 | AT2G32250 | 25.429 | 350 | 243 | 4 | 11 | 343 | 120 | 468 | 1.82e-37 | 145 |
| MS.gene54921.t1 | AT2G32250 | 25.429 | 350 | 243 | 4 | 11 | 343 | 120 | 468 | 1.82e-37 | 145 |
| MS.gene54921.t1 | AT2G32250 | 25.429 | 350 | 243 | 4 | 11 | 343 | 120 | 468 | 1.82e-37 | 145 |
| MS.gene54921.t1 | AT2G32250 | 25.429 | 350 | 243 | 4 | 11 | 343 | 120 | 468 | 1.82e-37 | 145 |
| MS.gene54921.t1 | AT3G06250 | 26.479 | 355 | 228 | 5 | 54 | 382 | 335 | 682 | 6.06e-36 | 141 |
| MS.gene54921.t1 | AT3G06250 | 26.479 | 355 | 228 | 5 | 54 | 382 | 335 | 682 | 6.06e-36 | 141 |
| MS.gene54921.t1 | AT3G06250 | 26.479 | 355 | 228 | 5 | 54 | 382 | 335 | 682 | 6.06e-36 | 141 |
| MS.gene54921.t1 | AT1G80010 | 27.500 | 320 | 199 | 8 | 62 | 362 | 289 | 594 | 2.20e-34 | 136 |
| MS.gene54921.t1 | AT5G18960 | 26.933 | 375 | 223 | 10 | 14 | 349 | 286 | 648 | 1.57e-33 | 134 |
| MS.gene54921.t1 | AT5G18960 | 26.933 | 375 | 223 | 10 | 14 | 349 | 286 | 648 | 1.57e-33 | 134 |
| MS.gene54921.t1 | AT4G19990 | 25.568 | 352 | 241 | 3 | 13 | 343 | 64 | 415 | 4.38e-32 | 129 |
| MS.gene54921.t1 | AT4G19990 | 25.568 | 352 | 241 | 3 | 13 | 343 | 121 | 472 | 5.29e-32 | 129 |
| MS.gene54921.t1 | AT4G19990 | 25.568 | 352 | 241 | 3 | 13 | 343 | 121 | 472 | 5.29e-32 | 129 |
| MS.gene54921.t1 | AT1G52520 | 26.797 | 306 | 213 | 7 | 62 | 361 | 265 | 565 | 5.41e-32 | 129 |
| MS.gene54921.t1 | AT4G19990 | 25.568 | 352 | 241 | 3 | 13 | 343 | 135 | 486 | 5.78e-32 | 129 |
| MS.gene54921.t1 | AT4G19990 | 25.568 | 352 | 241 | 3 | 13 | 343 | 121 | 472 | 6.31e-32 | 129 |
| MS.gene54921.t1 | AT4G19990 | 25.568 | 352 | 241 | 3 | 13 | 343 | 121 | 472 | 7.89e-32 | 129 |
| MS.gene54921.t1 | AT4G19990 | 25.568 | 352 | 241 | 3 | 13 | 343 | 121 | 472 | 7.89e-32 | 129 |
| MS.gene54921.t1 | AT4G38170 | 26.647 | 334 | 217 | 6 | 76 | 382 | 45 | 377 | 1.24e-31 | 127 |
Find 63 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATATGCCACTTGGAATA+TGG | 0.191467 | 4.4:-66701286 | MS.gene54921:CDS |
| GCAATCCAAACTTACTTATT+AGG | 0.216308 | 4.4:+66699800 | None:intergenic |
| TTCCTTTGCGTGGGCTTTAA+AGG | 0.228847 | 4.4:-66701195 | MS.gene54921:intron |
| TACTTTGATAGGATCATAAA+AGG | 0.274738 | 4.4:-66699711 | MS.gene54921:intron |
| ATTCGAGCATACGAATCTTT+TGG | 0.279666 | 4.4:-66701350 | MS.gene54921:CDS |
| CTCATGTTGGAGCAACTTAA+AGG | 0.285515 | 4.4:+66700414 | None:intergenic |
| TCATCACAATCATGAGTTAT+TGG | 0.289585 | 4.4:-66701707 | MS.gene54921:CDS |
| TATTGATGAACGTAACAAAT+TGG | 0.310406 | 4.4:-66701402 | MS.gene54921:CDS |
| GCAACTTCAACTCCTTCTTT+TGG | 0.311198 | 4.4:+66699930 | None:intergenic |
| ACAAAAGTTGACAATGGTTC+TGG | 0.349265 | 4.4:-66700325 | MS.gene54921:CDS |
| TTGGTGTTGCTGTCAAAATT+AGG | 0.355142 | 4.4:-66700543 | MS.gene54921:CDS |
| ACTTAAGGAAGCCATTAAAA+TGG | 0.358796 | 4.4:-66701017 | MS.gene54921:CDS |
| AAAATCTATCAAACTTGTAT+TGG | 0.374948 | 4.4:+66700667 | None:intergenic |
| AGATCAAGATCCCGCACTTA+AGG | 0.392664 | 4.4:-66701032 | MS.gene54921:CDS |
| AATAGTGAATTCATATTTGA+AGG | 0.396961 | 4.4:+66701421 | None:intergenic |
| GATGCAGCATGTTCCTCAAT+AGG | 0.398909 | 4.4:+66700454 | None:intergenic |
| TTTGCTGGGATGACAACAAC+AGG | 0.410820 | 4.4:-66700734 | MS.gene54921:CDS |
| TGGAAAAGAGCAAGTCAATA+TGG | 0.415923 | 4.4:+66700798 | None:intergenic |
| GAGCATATTATGTGGGCATT+TGG | 0.419517 | 4.4:-66701380 | MS.gene54921:CDS |
| CAAAATGCATGCTGTGTGTT+TGG | 0.421330 | 4.4:+66700989 | None:intergenic |
| TGATATGCCACTTGGAATAT+GGG | 0.434301 | 4.4:-66701285 | MS.gene54921:CDS |
| AACCAGCTTTCGACAACAAT+AGG | 0.437905 | 4.4:+66701620 | None:intergenic |
| GGAAAACATGTTCTGATATG+AGG | 0.442250 | 4.4:+66700475 | None:intergenic |
| TTGGGCATTAGCTTATTTGA+AGG | 0.451954 | 4.4:-66700765 | MS.gene54921:CDS |
| ATCCTATTGTTGTCGAAAGC+TGG | 0.455314 | 4.4:-66701622 | MS.gene54921:intron |
| ACATGCTATTCGTGTGCTAA+TGG | 0.455837 | 4.4:-66700290 | MS.gene54921:intron |
| CGAAAGAGAGTGGAAATCAA+TGG | 0.466880 | 4.4:-66700849 | MS.gene54921:CDS |
| TTGATAGGATCATAAAAGGT+TGG | 0.470332 | 4.4:-66699707 | MS.gene54921:intron |
| GTTGGAATGTTGCGATAAGC+AGG | 0.492886 | 4.4:+66701661 | None:intergenic |
| GATTTAGTTCCACCACAACT+TGG | 0.498513 | 4.4:+66699882 | None:intergenic |
| CGCTGTCATGTTCCAAGTTG+TGG | 0.511566 | 4.4:-66699894 | MS.gene54921:CDS |
| TGGAGCAACTTAAAGGCATA+TGG | 0.514224 | 4.4:+66700421 | None:intergenic |
| TAGATAACTCAATCTCATGT+TGG | 0.522807 | 4.4:+66700401 | None:intergenic |
| TTGTGGCAAAGTTGTCAAGT+TGG | 0.535071 | 4.4:-66700955 | MS.gene54921:CDS |
| ACAAATTGGAGCATATTATG+TGG | 0.539309 | 4.4:-66701388 | MS.gene54921:CDS |
| GTCAAAATTAGGAATCAAGC+AGG | 0.550621 | 4.4:-66700532 | MS.gene54921:CDS |
| AGAAGATTTCTTCCTTTGCG+TGG | 0.551128 | 4.4:-66701205 | MS.gene54921:CDS |
| GAAGATTTCTTCCTTTGCGT+GGG | 0.554338 | 4.4:-66701204 | MS.gene54921:CDS |
| ATACGACTTTGATCAGCAGT+TGG | 0.558928 | 4.4:+66701643 | None:intergenic |
| TAGGAATCAAGCAGGAGAAG+AGG | 0.559938 | 4.4:-66700524 | MS.gene54921:CDS |
| AATCGTTATGATATGCCACT+TGG | 0.563602 | 4.4:-66701293 | MS.gene54921:CDS |
| TTAATGGCTTCCTTAAGTGC+GGG | 0.567307 | 4.4:+66701022 | None:intergenic |
| TTTAATGGCTTCCTTAAGTG+CGG | 0.575636 | 4.4:+66701021 | None:intergenic |
| AGAGGATCAAGACCAAAAGA+AGG | 0.579538 | 4.4:-66699942 | MS.gene54921:CDS |
| TAATGCCCAAAATTCACGAT+TGG | 0.579684 | 4.4:+66700778 | None:intergenic |
| CGGATGATTTCGAAAGAGAG+TGG | 0.582752 | 4.4:-66700859 | MS.gene54921:CDS |
| CAAATTGGAGCATATTATGT+GGG | 0.593912 | 4.4:-66701387 | MS.gene54921:CDS |
| TGGGTTGGTGTTGATAATCA+CGG | 0.609843 | 4.4:-66701266 | MS.gene54921:CDS |
| TGCACAATTTGATTTGTGCA+AGG | 0.611924 | 4.4:-66700825 | MS.gene54921:CDS |
| TACCTTTAAAGCCCACGCAA+AGG | 0.613106 | 4.4:+66701193 | None:intergenic |
| GGTGTATCATTTAGAATGTG+CGG | 0.618416 | 4.4:-66700879 | MS.gene54921:CDS |
| CTTTAAACAAGAGTTTCACA+AGG | 0.629391 | 4.4:-66700900 | MS.gene54921:CDS |
| TACTTATTAGGAGATTGAGA+AGG | 0.635742 | 4.4:+66699812 | None:intergenic |
| AAATCCAAAGGTCGGCCAAG+AGG | 0.639624 | 4.4:-66699960 | MS.gene54921:intron |
| AAGGAGTTGAAGTTGCAAAG+AGG | 0.645725 | 4.4:-66699923 | MS.gene54921:CDS |
| ATGCCACTTGGAATATGGGT+TGG | 0.648688 | 4.4:-66701281 | MS.gene54921:CDS |
| CATCATACAAAAGTTGACAA+TGG | 0.656549 | 4.4:-66700331 | MS.gene54921:CDS |
| GCAGCAACTGAAATTGACAA+TGG | 0.666988 | 4.4:-66700370 | MS.gene54921:CDS |
| ACACCAACCCATATTCCAAG+TGG | 0.679959 | 4.4:+66701278 | None:intergenic |
| TGTCATGTTCCAAGTTGTGG+TGG | 0.684261 | 4.4:-66699891 | MS.gene54921:CDS |
| ATAACGATTTATTCTATACG+TGG | 0.695494 | 4.4:+66701307 | None:intergenic |
| CTTGGAACATGACAGCGACG+AGG | 0.719993 | 4.4:+66699900 | None:intergenic |
| TTGCTGGGATGACAACAACA+GGG | 0.723918 | 4.4:-66700733 | MS.gene54921:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATTATCTTATAATTGA+GGG | - | chr4.4:66700880-66700899 | MS.gene54921:CDS | 15.0% |
| !! | TAATTATTATATCTTTCTGT+AGG | - | chr4.4:66700904-66700923 | MS.gene54921:CDS | 15.0% |
| !!! | TCAATTTTTTTCTTTTTGTT+TGG | + | chr4.4:66701631-66701650 | None:intergenic | 15.0% |
| !! | AAAATCTATCAAACTTGTAT+TGG | + | chr4.4:66700806-66700825 | None:intergenic | 20.0% |
| !! | AATAGTGAATTCATATTTGA+AGG | + | chr4.4:66700052-66700071 | None:intergenic | 20.0% |
| !! | ACATCACAAATATCATTATT+TGG | + | chr4.4:66701471-66701490 | None:intergenic | 20.0% |
| !! | GAATCATTATCTTATAATTG+AGG | - | chr4.4:66700879-66700898 | MS.gene54921:CDS | 20.0% |
| !! | GCATATATAAAAAGATTCTT+AGG | - | chr4.4:66700778-66700797 | MS.gene54921:CDS | 20.0% |
| !!! | TCAAATATCTTTTCTAGAAA+AGG | + | chr4.4:66699938-66699957 | None:intergenic | 20.0% |
| ! | AATCTCCTAATAAGTAAGTT+TGG | - | chr4.4:66701665-66701684 | MS.gene54921:CDS | 25.0% |
| ! | ATAACGATTTATTCTATACG+TGG | + | chr4.4:66700166-66700185 | None:intergenic | 25.0% |
| ! | TACTTTGATAGGATCATAAA+AGG | - | chr4.4:66701759-66701778 | MS.gene54921:CDS | 25.0% |
| ! | TATTATATCTTTCTGTAGGT+TGG | - | chr4.4:66700908-66700927 | MS.gene54921:CDS | 25.0% |
| ! | TATTGATGAACGTAACAAAT+TGG | - | chr4.4:66700068-66700087 | MS.gene54921:intron | 25.0% |
| ! | TCAAGAATATGTGATTGATT+TGG | - | chr4.4:66701434-66701453 | MS.gene54921:CDS | 25.0% |
| ! | TCAGAGAAAAAAATAGTTAC+AGG | - | chr4.4:66699905-66699924 | MS.gene54921:CDS | 25.0% |
| ! | TTGGTTGCTATAAAAACAAT+TGG | - | chr4.4:66699704-66699723 | MS.gene54921:intron | 25.0% |
| !! | TGATCTGTAAGAATAGTTTT+TGG | + | chr4.4:66700424-66700443 | None:intergenic | 25.0% |
| !!! | AAAAAGGGAGATATTTTGAA+TGG | + | chr4.4:66701225-66701244 | None:intergenic | 25.0% |
| !!! | TAGTTTTTGGATATTTTCCT+TGG | + | chr4.4:66700411-66700430 | None:intergenic | 25.0% |
| !!! | TATAAAAACAATTGGCTTTG+AGG | - | chr4.4:66699712-66699731 | MS.gene54921:intron | 25.0% |
| ACAAATTGGAGCATATTATG+TGG | - | chr4.4:66700082-66700101 | MS.gene54921:intron | 30.0% | |
| ACTTAAGGAAGCCATTAAAA+TGG | - | chr4.4:66700453-66700472 | MS.gene54921:CDS | 30.0% | |
| ATCACATATTCTTGAGTTTC+TGG | + | chr4.4:66701429-66701448 | None:intergenic | 30.0% | |
| CAAATTGGAGCATATTATGT+GGG | - | chr4.4:66700083-66700102 | MS.gene54921:intron | 30.0% | |
| CATCATACAAAAGTTGACAA+TGG | - | chr4.4:66701139-66701158 | MS.gene54921:intron | 30.0% | |
| CTTTAAACAAGAGTTTCACA+AGG | - | chr4.4:66700570-66700589 | MS.gene54921:intron | 30.0% | |
| GCAATCCAAACTTACTTATT+AGG | + | chr4.4:66701673-66701692 | None:intergenic | 30.0% | |
| GGAAAACAAGAAGTCAATAT+TGG | + | chr4.4:66701733-66701752 | None:intergenic | 30.0% | |
| TACTTATTAGGAGATTGAGA+AGG | + | chr4.4:66701661-66701680 | None:intergenic | 30.0% | |
| TAGAGATTGAAACTTAGTAG+AGG | + | chr4.4:66701311-66701330 | None:intergenic | 30.0% | |
| TAGATAACTCAATCTCATGT+TGG | + | chr4.4:66701072-66701091 | None:intergenic | 30.0% | |
| TCAATCTCTAATTCGATGTT+TGG | - | chr4.4:66701321-66701340 | MS.gene54921:CDS | 30.0% | |
| TCATCACAATCATGAGTTAT+TGG | - | chr4.4:66699763-66699782 | MS.gene54921:intron | 30.0% | |
| TGAGTTATTGGATGAAAAAG+AGG | - | chr4.4:66699775-66699794 | MS.gene54921:intron | 30.0% | |
| TTCTTTACCAATACAACTCT+CGG | + | chr4.4:66699974-66699993 | None:intergenic | 30.0% | |
| TTGATAGGATCATAAAAGGT+TGG | - | chr4.4:66701763-66701782 | MS.gene54921:CDS | 30.0% | |
| TTGTTACAAAATCCAAAGGT+CGG | - | chr4.4:66701502-66701521 | MS.gene54921:intron | 30.0% | |
| TTTCCTTCTTGTACTTTGAT+AGG | - | chr4.4:66701748-66701767 | MS.gene54921:CDS | 30.0% | |
| TTTCTTGTCTCCATCAAAAA+GGG | + | chr4.4:66701240-66701259 | None:intergenic | 30.0% | |
| ! | ACCTTTGGATTTTGTAACAA+TGG | + | chr4.4:66701502-66701521 | None:intergenic | 30.0% |
| ! | ATTTTGCATATGGCATATTG+TGG | - | chr4.4:66700498-66700517 | MS.gene54921:CDS | 30.0% |
| ! | CAAAATATCTCCCTTTTTGA+TGG | - | chr4.4:66701227-66701246 | MS.gene54921:CDS | 30.0% |
| ! | CCTTTGGATTTTGTAACAAT+GGG | + | chr4.4:66701501-66701520 | None:intergenic | 30.0% |
| ! | CTTTTCCAATCGTGAATTTT+GGG | - | chr4.4:66700687-66700706 | MS.gene54921:CDS | 30.0% |
| ! | GTTTGGCAATTCCATTTTAA+TGG | + | chr4.4:66700467-66700486 | None:intergenic | 30.0% |
| ! | TCTTTTCCAATCGTGAATTT+TGG | - | chr4.4:66700686-66700705 | MS.gene54921:CDS | 30.0% |
| !! | AATTGGCTTTGAGGAAAAAT+GGG | - | chr4.4:66699721-66699740 | MS.gene54921:intron | 30.0% |
| !!! | AAGTTGGTTTTCTTTTGCAT+TGG | - | chr4.4:66700531-66700550 | MS.gene54921:CDS | 30.0% |
| !!! | AGTTGGTTTTCTTTTGCATT+GGG | - | chr4.4:66700532-66700551 | MS.gene54921:CDS | 30.0% |
| AATCGTTATGATATGCCACT+TGG | - | chr4.4:66700177-66700196 | MS.gene54921:intron | 35.0% | |
| ACAAAAGTTGACAATGGTTC+TGG | - | chr4.4:66701145-66701164 | MS.gene54921:intron | 35.0% | |
| ATTCAATCCGAGAGTTGTAT+TGG | - | chr4.4:66699964-66699983 | MS.gene54921:intron | 35.0% | |
| CCCATTGTTACAAAATCCAA+AGG | - | chr4.4:66701498-66701517 | MS.gene54921:intron | 35.0% | |
| CTTTCTTGTCTCCATCAAAA+AGG | + | chr4.4:66701241-66701260 | None:intergenic | 35.0% | |
| GATCCTATCAAAGTACAAGA+AGG | + | chr4.4:66701754-66701773 | None:intergenic | 35.0% | |
| GGAAAACATGTTCTGATATG+AGG | + | chr4.4:66700998-66701017 | None:intergenic | 35.0% | |
| GTCAAAATTAGGAATCAAGC+AGG | - | chr4.4:66700938-66700957 | MS.gene54921:CDS | 35.0% | |
| TAATGCCCAAAATTCACGAT+TGG | + | chr4.4:66700695-66700714 | None:intergenic | 35.0% | |
| TGGAAAAGAGCAAGTCAATA+TGG | + | chr4.4:66700675-66700694 | None:intergenic | 35.0% | |
| TTGACAACATGGCTAGATTT+GGG | + | chr4.4:66701274-66701293 | None:intergenic | 35.0% | |
| TTTAATGGCTTCCTTAAGTG+CGG | + | chr4.4:66700452-66700471 | None:intergenic | 35.0% | |
| ! | ATGATATGCCACTTGGAATA+TGG | - | chr4.4:66700184-66700203 | MS.gene54921:intron | 35.0% |
| ! | ATTCGAGCATACGAATCTTT+TGG | - | chr4.4:66700120-66700139 | MS.gene54921:intron | 35.0% |
| ! | ATTTTCCTTGGACAAAAGCT+AGG | + | chr4.4:66700399-66700418 | None:intergenic | 35.0% |
| ! | CACGGAAATTCGATTTTCTT+TGG | - | chr4.4:66700222-66700241 | MS.gene54921:intron | 35.0% |
| ! | CAGAACATGTTTTCCTATTG+AGG | - | chr4.4:66701003-66701022 | MS.gene54921:CDS | 35.0% |
| ! | GGTGTATCATTTAGAATGTG+CGG | - | chr4.4:66700591-66700610 | MS.gene54921:intron | 35.0% |
| ! | TGATATGCCACTTGGAATAT+GGG | - | chr4.4:66700185-66700204 | MS.gene54921:intron | 35.0% |
| ! | TTGGGCATTAGCTTATTTGA+AGG | - | chr4.4:66700705-66700724 | MS.gene54921:CDS | 35.0% |
| !! | AAGGGAGATATTTTGAATGG+AGG | + | chr4.4:66701222-66701241 | None:intergenic | 35.0% |
| !! | CAATTGGCTTTGAGGAAAAA+TGG | - | chr4.4:66699720-66699739 | MS.gene54921:intron | 35.0% |
| !! | TGAAGGACTTTTTCTTTGCT+GGG | - | chr4.4:66700722-66700741 | MS.gene54921:CDS | 35.0% |
| !! | TGCACAATTTGATTTGTGCA+AGG | - | chr4.4:66700645-66700664 | MS.gene54921:intron | 35.0% |
| !! | TTGAAGGACTTTTTCTTTGC+TGG | - | chr4.4:66700721-66700740 | MS.gene54921:CDS | 35.0% |
| !! | TTGGTGTTGCTGTCAAAATT+AGG | - | chr4.4:66700927-66700946 | MS.gene54921:CDS | 35.0% |
| AACCAGCTTTCGACAACAAT+AGG | + | chr4.4:66699853-66699872 | None:intergenic | 40.0% | |
| AAGGAGTTGAAGTTGCAAAG+AGG | - | chr4.4:66701547-66701566 | MS.gene54921:intron | 40.0% | |
| ACATGCTATTCGTGTGCTAA+TGG | - | chr4.4:66701180-66701199 | MS.gene54921:intron | 40.0% | |
| AGAAGATTTCTTCCTTTGCG+TGG | - | chr4.4:66700265-66700284 | MS.gene54921:intron | 40.0% | |
| AGAGAACAAGTTGCTACTAG+AGG | - | chr4.4:66701369-66701388 | MS.gene54921:CDS | 40.0% | |
| AGAGGATCAAGACCAAAAGA+AGG | - | chr4.4:66701528-66701547 | MS.gene54921:intron | 40.0% | |
| ATACGACTTTGATCAGCAGT+TGG | + | chr4.4:66699830-66699849 | None:intergenic | 40.0% | |
| ATCCTATTGTTGTCGAAAGC+TGG | - | chr4.4:66699848-66699867 | MS.gene54921:CDS | 40.0% | |
| CAAAATGCATGCTGTGTGTT+TGG | + | chr4.4:66700484-66700503 | None:intergenic | 40.0% | |
| CGAAAGAGAGTGGAAATCAA+TGG | - | chr4.4:66700621-66700640 | MS.gene54921:intron | 40.0% | |
| CTCATGTTGGAGCAACTTAA+AGG | + | chr4.4:66701059-66701078 | None:intergenic | 40.0% | |
| GAAGATTTCTTCCTTTGCGT+GGG | - | chr4.4:66700266-66700285 | MS.gene54921:intron | 40.0% | |
| GAGCATATTATGTGGGCATT+TGG | - | chr4.4:66700090-66700109 | MS.gene54921:intron | 40.0% | |
| GCAGCAACTGAAATTGACAA+TGG | - | chr4.4:66701100-66701119 | MS.gene54921:intron | 40.0% | |
| GTTGACAACATGGCTAGATT+TGG | + | chr4.4:66701275-66701294 | None:intergenic | 40.0% | |
| TGACAACATGGCTAGATTTG+GGG | + | chr4.4:66701273-66701292 | None:intergenic | 40.0% | |
| TTAATGGCTTCCTTAAGTGC+GGG | + | chr4.4:66700451-66700470 | None:intergenic | 40.0% | |
| TTGTGGCAAAGTTGTCAAGT+TGG | - | chr4.4:66700515-66700534 | MS.gene54921:CDS | 40.0% | |
| ! | CACAGCATGCATTTTGCATA+TGG | - | chr4.4:66700488-66700507 | MS.gene54921:CDS | 40.0% |
| ! | GATTTAGTTCCACCACAACT+TGG | + | chr4.4:66701591-66701610 | None:intergenic | 40.0% |
| ! | GCAACTTCAACTCCTTCTTT+TGG | + | chr4.4:66701543-66701562 | None:intergenic | 40.0% |
| ! | TGGAGCAACTTAAAGGCATA+TGG | + | chr4.4:66701052-66701071 | None:intergenic | 40.0% |
| !! | AACTTCCTAGCTTTTGTCCA+AGG | - | chr4.4:66700391-66700410 | MS.gene54921:CDS | 40.0% |
| !! | TGGGTTGGTGTTGATAATCA+CGG | - | chr4.4:66700204-66700223 | MS.gene54921:intron | 40.0% |
| !!! | TCTTTTGGTCTTGATCCTCT+TGG | + | chr4.4:66701528-66701547 | None:intergenic | 40.0% |
| ACACCAACCCATATTCCAAG+TGG | + | chr4.4:66700195-66700214 | None:intergenic | 45.0% | |
| AGATCAAGATCCCGCACTTA+AGG | - | chr4.4:66700438-66700457 | MS.gene54921:CDS | 45.0% | |
| CAGCATTGCAGTTGACAACA+TGG | + | chr4.4:66701285-66701304 | None:intergenic | 45.0% | |
| CGGATGATTTCGAAAGAGAG+TGG | - | chr4.4:66700611-66700630 | MS.gene54921:intron | 45.0% | |
| GATGCAGCATGTTCCTCAAT+AGG | + | chr4.4:66701019-66701038 | None:intergenic | 45.0% | |
| GTTGGAATGTTGCGATAAGC+AGG | + | chr4.4:66699812-66699831 | None:intergenic | 45.0% | |
| TAGGAATCAAGCAGGAGAAG+AGG | - | chr4.4:66700946-66700965 | MS.gene54921:CDS | 45.0% | |
| TGTCATGTTCCAAGTTGTGG+TGG | - | chr4.4:66701579-66701598 | MS.gene54921:intron | 45.0% | |
| TTGCTGGGATGACAACAACA+GGG | - | chr4.4:66700737-66700756 | MS.gene54921:CDS | 45.0% | |
| TTTGCTGGGATGACAACAAC+AGG | - | chr4.4:66700736-66700755 | MS.gene54921:CDS | 45.0% | |
| ! | ATGCCACTTGGAATATGGGT+TGG | - | chr4.4:66700189-66700208 | MS.gene54921:intron | 45.0% |
| ! | TTCCTTTGCGTGGGCTTTAA+AGG | - | chr4.4:66700275-66700294 | MS.gene54921:intron | 45.0% |
| !! | TACCTTTAAAGCCCACGCAA+AGG | + | chr4.4:66700280-66700299 | None:intergenic | 45.0% |
| !! | TGGCTTTGAGGAAAAATGGG+TGG | - | chr4.4:66699724-66699743 | MS.gene54921:intron | 45.0% |
| !! | AATAATAACATAAATATAAA+AGG | + | chr4.4:66700365-66700384 | None:intergenic | 5.0% |
| AAATCCAAAGGTCGGCCAAG+AGG | - | chr4.4:66701510-66701529 | MS.gene54921:intron | 50.0% | |
| CGCTGTCATGTTCCAAGTTG+TGG | - | chr4.4:66701576-66701595 | MS.gene54921:intron | 50.0% | |
| CTTGGAACATGACAGCGACG+AGG | + | chr4.4:66701573-66701592 | None:intergenic | 55.0% | |
| TGATCCTCTTGGCCGACCTT+TGG | + | chr4.4:66701517-66701536 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 66699701 | 66701791 | 66699701 | ID=MS.gene54921 |
| chr4.4 | mRNA | 66699701 | 66701791 | 66699701 | ID=MS.gene54921.t1;Parent=MS.gene54921 |
| chr4.4 | exon | 66701623 | 66701791 | 66701623 | ID=MS.gene54921.t1.exon1;Parent=MS.gene54921.t1 |
| chr4.4 | CDS | 66701623 | 66701791 | 66701623 | ID=cds.MS.gene54921.t1;Parent=MS.gene54921.t1 |
| chr4.4 | exon | 66701196 | 66701455 | 66701196 | ID=MS.gene54921.t1.exon2;Parent=MS.gene54921.t1 |
| chr4.4 | CDS | 66701196 | 66701455 | 66701196 | ID=cds.MS.gene54921.t1;Parent=MS.gene54921.t1 |
| chr4.4 | exon | 66700658 | 66701101 | 66700658 | ID=MS.gene54921.t1.exon3;Parent=MS.gene54921.t1 |
| chr4.4 | CDS | 66700658 | 66701101 | 66700658 | ID=cds.MS.gene54921.t1;Parent=MS.gene54921.t1 |
| chr4.4 | exon | 66700291 | 66700566 | 66700291 | ID=MS.gene54921.t1.exon4;Parent=MS.gene54921.t1 |
| chr4.4 | CDS | 66700291 | 66700566 | 66700291 | ID=cds.MS.gene54921.t1;Parent=MS.gene54921.t1 |
| chr4.4 | exon | 66699815 | 66699972 | 66699815 | ID=MS.gene54921.t1.exon5;Parent=MS.gene54921.t1 |
| chr4.4 | CDS | 66699815 | 66699972 | 66699815 | ID=cds.MS.gene54921.t1;Parent=MS.gene54921.t1 |
| chr4.4 | exon | 66699701 | 66699722 | 66699701 | ID=MS.gene54921.t1.exon6;Parent=MS.gene54921.t1 |
| chr4.4 | CDS | 66699701 | 66699722 | 66699701 | ID=cds.MS.gene54921.t1;Parent=MS.gene54921.t1 |
| Gene Sequence |
| Protein sequence |
