Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56402.t1 | XP_003607905.1 | 97.3 | 623 | 15 | 1 | 1 | 623 | 1 | 621 | 0.00E+00 | 1213.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56402.t1 | Q88BD4 | 28.3 | 434 | 277 | 13 | 93 | 521 | 17 | 421 | 7.3e-38 | 160.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56402.t1 | G7JJZ2 | 97.3 | 623 | 15 | 1 | 1 | 623 | 1 | 621 | 0.0e+00 | 1213.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050133 | MS.gene56402 | -0.813273 | 2.78E-51 | -1.69E-46 |
| MS.gene050426 | MS.gene56402 | -0.821146 | 4.71E-53 | -1.69E-46 |
| MS.gene050811 | MS.gene56402 | -0.826816 | 2.20E-54 | -1.69E-46 |
| MS.gene05081 | MS.gene56402 | 0.825679 | 4.11E-54 | -1.69E-46 |
| MS.gene051208 | MS.gene56402 | 0.809434 | 1.90E-50 | -1.69E-46 |
| MS.gene051244 | MS.gene56402 | 0.820355 | 7.17E-53 | -1.69E-46 |
| MS.gene051525 | MS.gene56402 | 0.837981 | 3.77E-57 | -1.69E-46 |
| MS.gene051552 | MS.gene56402 | -0.840295 | 9.48E-58 | -1.69E-46 |
| MS.gene051838 | MS.gene56402 | 0.80196 | 7.03E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene56402 | -0.807664 | 4.53E-50 | -1.69E-46 |
| MS.gene052134 | MS.gene56402 | 0.815402 | 9.42E-52 | -1.69E-46 |
| MS.gene052469 | MS.gene56402 | 0.805998 | 1.02E-49 | -1.69E-46 |
| MS.gene052501 | MS.gene56402 | 0.803071 | 4.15E-49 | -1.69E-46 |
| MS.gene052589 | MS.gene56402 | 0.841465 | 4.68E-58 | -1.69E-46 |
| MS.gene053330 | MS.gene56402 | 0.87046 | 1.43E-66 | -1.69E-46 |
| MS.gene054107 | MS.gene56402 | 0.826216 | 3.06E-54 | -1.69E-46 |
| MS.gene054110 | MS.gene56402 | 0.812108 | 5.01E-51 | -1.69E-46 |
| MS.gene054343 | MS.gene56402 | 0.844786 | 6.09E-59 | -1.69E-46 |
| MS.gene054344 | MS.gene56402 | 0.843802 | 1.12E-58 | -1.69E-46 |
| MS.gene054884 | MS.gene56402 | -0.827619 | 1.42E-54 | -1.69E-46 |
| MS.gene055370 | MS.gene56402 | 0.852736 | 3.80E-61 | -1.69E-46 |
| MS.gene056351 | MS.gene56402 | 0.881659 | 2.00E-70 | -1.69E-46 |
| MS.gene056633 | MS.gene56402 | 0.888658 | 4.86E-73 | -1.69E-46 |
| MS.gene056664 | MS.gene56402 | 0.801617 | 8.27E-49 | -1.69E-46 |
| MS.gene056877 | MS.gene56402 | 0.845905 | 3.03E-59 | -1.69E-46 |
| MS.gene057196 | MS.gene56402 | 0.859976 | 2.85E-63 | -1.69E-46 |
| MS.gene057332 | MS.gene56402 | 0.848006 | 8.07E-60 | -1.69E-46 |
| MS.gene058418 | MS.gene56402 | -0.825847 | 3.75E-54 | -1.69E-46 |
| MS.gene058444 | MS.gene56402 | 0.834175 | 3.49E-56 | -1.69E-46 |
| MS.gene058746 | MS.gene56402 | 0.873407 | 1.51E-67 | -1.69E-46 |
| MS.gene059061 | MS.gene56402 | -0.813621 | 2.33E-51 | -1.69E-46 |
| MS.gene059303 | MS.gene56402 | 0.820582 | 6.36E-53 | -1.69E-46 |
| MS.gene059512 | MS.gene56402 | 0.957412 | 2.89E-115 | -1.69E-46 |
| MS.gene061231 | MS.gene56402 | 0.827445 | 1.56E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene56402 | MS.gene49437 | PPI |
| MS.gene56402 | MS.gene005970 | PPI |
| MS.gene34039 | MS.gene56402 | PPI |
| MS.gene56402 | MS.gene54796 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56402.t1 | MTR_4g084270 | 97.271 | 623 | 15 | 1 | 1 | 623 | 1 | 621 | 0.0 | 1255 |
| MS.gene56402.t1 | MTR_1g094980 | 42.908 | 557 | 273 | 12 | 73 | 617 | 18 | 541 | 1.81e-136 | 409 |
| MS.gene56402.t1 | MTR_1g094980 | 40.640 | 625 | 315 | 16 | 15 | 617 | 23 | 613 | 3.15e-135 | 409 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56402.t1 | AT1G70820 | 73.710 | 620 | 151 | 6 | 1 | 617 | 1 | 611 | 0.0 | 946 |
| MS.gene56402.t1 | AT1G70820 | 74.457 | 599 | 141 | 6 | 1 | 596 | 1 | 590 | 0.0 | 923 |
| MS.gene56402.t1 | AT5G17530 | 43.643 | 527 | 256 | 10 | 75 | 590 | 20 | 516 | 6.03e-134 | 403 |
| MS.gene56402.t1 | AT5G17530 | 43.633 | 534 | 258 | 11 | 70 | 590 | 52 | 555 | 2.10e-133 | 403 |
| MS.gene56402.t1 | AT5G17530 | 43.633 | 534 | 258 | 11 | 70 | 590 | 52 | 555 | 2.10e-133 | 403 |
| MS.gene56402.t1 | AT5G17530 | 43.633 | 534 | 258 | 11 | 70 | 590 | 52 | 555 | 2.10e-133 | 403 |
| MS.gene56402.t1 | AT5G17530 | 43.633 | 534 | 258 | 11 | 70 | 590 | 52 | 555 | 2.10e-133 | 403 |
| MS.gene56402.t1 | AT5G17530 | 43.633 | 534 | 258 | 11 | 70 | 590 | 85 | 588 | 6.18e-133 | 403 |
| MS.gene56402.t1 | AT5G17530 | 44.466 | 524 | 248 | 11 | 70 | 580 | 85 | 578 | 4.28e-132 | 402 |
Find 142 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGATAAGTTTGTTGAAAA+TGG | 0.159254 | 4.3:-27334551 | MS.gene56402:CDS |
| AACTCCACTTAAGGGATTTC+AGG | 0.200454 | 4.3:-27337014 | MS.gene56402:intron |
| TCTCCTTGATGATTTCTCTT+AGG | 0.241263 | 4.3:+27337062 | None:intergenic |
| GTACAGGAAGGGAGGCTTAA+AGG | 0.243975 | 4.3:-27335175 | MS.gene56402:intron |
| ATGAGTTTGTCACCGTTTAT+TGG | 0.279165 | 4.3:+27335991 | None:intergenic |
| GATATCCTCTTGAGAATGTT+AGG | 0.280295 | 4.3:-27337533 | MS.gene56402:CDS |
| GAGGCAATATCAGAGAGTTT+TGG | 0.300966 | 4.3:-27337591 | MS.gene56402:CDS |
| CTCCTTTGTCAATGACATTT+CGG | 0.316509 | 4.3:+27335836 | None:intergenic |
| TGCAAGTTCACAGCAATGTT+TGG | 0.318198 | 4.3:+27334772 | None:intergenic |
| TGGTTGTATGGTGTTTGATA+TGG | 0.318441 | 4.3:-27337436 | MS.gene56402:CDS |
| AATGGTTTAGAGAAGGAAAA+AGG | 0.330346 | 4.3:-27337555 | MS.gene56402:CDS |
| GCATTATGAAACTCCACTTA+AGG | 0.337071 | 4.3:-27337023 | MS.gene56402:CDS |
| TGCTTTAGCATTTCGAGGTT+CGG | 0.347623 | 4.3:+27335468 | None:intergenic |
| TTAGAAAATTCAGCTGATCT+TGG | 0.348367 | 4.3:-27336069 | MS.gene56402:CDS |
| CATTATGAAACTCCACTTAA+GGG | 0.365922 | 4.3:-27337022 | MS.gene56402:CDS |
| TGTCTATGATGCTTCAATAA+TGG | 0.374026 | 4.3:-27337364 | MS.gene56402:intron |
| CTTATTACAGATTTATTGAA+TGG | 0.379212 | 4.3:+27337765 | None:intergenic |
| TTCAAACCATTGCGTGTGTA+AGG | 0.384986 | 4.3:+27337238 | None:intergenic |
| GTGAATGCTGGAAACGGTTC+AGG | 0.385357 | 4.3:-27336234 | MS.gene56402:CDS |
| ATGAAGAATTGGACAAGATT+AGG | 0.394518 | 4.3:-27337698 | MS.gene56402:CDS |
| AGAAGATGAGAAACCAAGTT+TGG | 0.394739 | 4.3:+27337791 | None:intergenic |
| GTAATAAGTGTGAAATGTTA+TGG | 0.397911 | 4.3:-27337750 | MS.gene56402:CDS |
| GCAAGTTCACAGCAATGTTT+GGG | 0.402997 | 4.3:+27334773 | None:intergenic |
| GAAAACCATTTCCTTGATGA+TGG | 0.403160 | 4.3:-27335745 | MS.gene56402:intron |
| TGTACGAGCATCGGTTACTA+TGG | 0.406310 | 4.3:+27335924 | None:intergenic |
| TAGACTCATGTGGTGATTGT+TGG | 0.408525 | 4.3:-27335144 | MS.gene56402:CDS |
| TTTGGGGAGTGGGTTATCAA+TGG | 0.408829 | 4.3:-27337573 | MS.gene56402:CDS |
| GGTTGTATGGTGTTTGATAT+GGG | 0.413997 | 4.3:-27337435 | MS.gene56402:CDS |
| TACAGGAAGGGAGGCTTAAA+GGG | 0.417177 | 4.3:-27335174 | MS.gene56402:intron |
| CATGGCTGCCATTGTATTGA+AGG | 0.421469 | 4.3:-27335962 | MS.gene56402:CDS |
| TTGAGTGTTGCAGTGTTTGC+CGG | 0.424973 | 4.3:-27337471 | MS.gene56402:CDS |
| ATATCTTTGCAAACCAAACT+TGG | 0.425190 | 4.3:-27337804 | MS.gene56402:CDS |
| TCTTGCTCGTGCTGGTTGTA+TGG | 0.433556 | 4.3:-27337448 | MS.gene56402:CDS |
| TCGGGATTGGGAATGTGATT+AGG | 0.440559 | 4.3:+27336129 | None:intergenic |
| CAGAATGGTTCGGATGTTAG+AGG | 0.441225 | 4.3:-27337669 | MS.gene56402:CDS |
| AAGCTTGGTGCAGATACCTT+TGG | 0.445592 | 4.3:-27336183 | MS.gene56402:CDS |
| ACTAACCATCATCAAGGAAA+TGG | 0.455559 | 4.3:+27335740 | None:intergenic |
| CTAAGTTCTACTGATTCATA+AGG | 0.458468 | 4.3:+27335505 | None:intergenic |
| AGTAGTGGTGGATGAAGAAT+TGG | 0.460522 | 4.3:-27337709 | MS.gene56402:CDS |
| TCGGTTACTATGGTTGATCC+TGG | 0.462108 | 4.3:+27335934 | None:intergenic |
| TGTTACTATCATTCTTTGCT+AGG | 0.462385 | 4.3:-27337834 | MS.gene56402:CDS |
| CAAACCTGAAATCCCTTAAG+TGG | 0.467227 | 4.3:+27337010 | None:intergenic |
| TTTGCCGGTCTTGCTCGTGC+TGG | 0.468617 | 4.3:-27337456 | MS.gene56402:CDS |
| GGACGCGACCCTCGAGTCAC+AGG | 0.474920 | 4.3:-27337501 | MS.gene56402:CDS |
| GTTGCATTGGAAGGCGAGAA+AGG | 0.478585 | 4.3:-27337645 | MS.gene56402:CDS |
| AACAAAGGGAATCCAATAAA+CGG | 0.482733 | 4.3:-27336003 | MS.gene56402:CDS |
| TGATTAGGAAACATGCCATC+AGG | 0.483044 | 4.3:+27336144 | None:intergenic |
| AGACTCATGTGGTGATTGTT+GGG | 0.486205 | 4.3:-27335143 | MS.gene56402:CDS |
| CATCTTATGATTGAAACATC+TGG | 0.487363 | 4.3:-27335784 | MS.gene56402:CDS |
| CCTCGAAATGCTAAAGCAAA+AGG | 0.489207 | 4.3:-27335463 | MS.gene56402:CDS |
| CCTCCACGGCAGGAGGAGTA+AGG | 0.491033 | 4.3:+27337610 | None:intergenic |
| GGTGAAAATTATAATTGAAA+TGG | 0.492081 | 4.3:-27335590 | MS.gene56402:CDS |
| TCTGATATTGCCTCCACGGC+AGG | 0.494254 | 4.3:+27337600 | None:intergenic |
| ACTAAGTTTATAACTGATAG+AGG | 0.494389 | 4.3:-27335889 | MS.gene56402:CDS |
| CTTATGAATCAGTAGAACTT+AGG | 0.496088 | 4.3:-27335504 | MS.gene56402:CDS |
| TATCAATTTGAGCAATGTCT+AGG | 0.498567 | 4.3:+27334567 | None:intergenic |
| TAGGAGGCTTCAGAATGGTT+CGG | 0.500282 | 4.3:-27337679 | MS.gene56402:CDS |
| GTGATTGTTGGGTGAGTGAA+GGG | 0.507653 | 4.3:-27335132 | MS.gene56402:CDS |
| TCAAGGAGGTTGCTTGTCAA+TGG | 0.508461 | 4.3:-27334740 | MS.gene56402:CDS |
| TGAACATGGACAACATGGTT+GGG | 0.514106 | 4.3:-27334821 | MS.gene56402:CDS |
| ATGAACATGGACAACATGGT+TGG | 0.518204 | 4.3:-27334822 | MS.gene56402:CDS |
| GAGAATGTTAGGGTGTCTCT+TGG | 0.518716 | 4.3:-27337522 | MS.gene56402:CDS |
| AAGCTTGGTGGATCAGATGA+AGG | 0.519389 | 4.3:-27335559 | MS.gene56402:CDS |
| ATTGAAGCATCATAGACAAA+TGG | 0.520839 | 4.3:+27337369 | None:intergenic |
| CTACAGATAATAGTGAATGC+TGG | 0.522007 | 4.3:-27336246 | MS.gene56402:intron |
| TCGTAAATATGCAAATAGAT+TGG | 0.522642 | 4.3:-27337152 | MS.gene56402:CDS |
| ATATTGATGCTCAAATGTAC+AGG | 0.524473 | 4.3:-27335078 | MS.gene56402:intron |
| TGACAAACTCATTGCTCTCA+TGG | 0.524707 | 4.3:-27335980 | MS.gene56402:CDS |
| ATATAATGAAGGGGCCTACA+TGG | 0.525333 | 4.3:-27335614 | MS.gene56402:intron |
| TTTGAGCATCAATATGAGCC+GGG | 0.527926 | 4.3:+27335086 | None:intergenic |
| CATATTGTAAATCAGGCTGA+TGG | 0.528700 | 4.3:+27334527 | None:intergenic |
| GGTGATTGTTGGGTGAGTGA+AGG | 0.531696 | 4.3:-27335133 | MS.gene56402:CDS |
| ATTTGAGCATCAATATGAGC+CGG | 0.540769 | 4.3:+27335085 | None:intergenic |
| ATATCCTCTTGAGAATGTTA+GGG | 0.543188 | 4.3:-27337532 | MS.gene56402:CDS |
| ACAACCAGCACGAGCAAGAC+CGG | 0.545469 | 4.3:+27337452 | None:intergenic |
| ATAATAGTGAATGCTGGAAA+CGG | 0.546802 | 4.3:-27336240 | MS.gene56402:CDS |
| TTTGAGATGCAGAGAGCCAA+AGG | 0.548288 | 4.3:+27336167 | None:intergenic |
| ATTGTATTGAAGGAAAATCC+AGG | 0.558299 | 4.3:-27335952 | MS.gene56402:CDS |
| CACCATTGTTTATACCGCGT+TGG | 0.558868 | 4.3:-27335862 | MS.gene56402:CDS |
| AACAATGAACATGGACAACA+TGG | 0.562336 | 4.3:-27334826 | MS.gene56402:CDS |
| TAACTAACTAACCATCATCA+AGG | 0.564044 | 4.3:+27335734 | None:intergenic |
| GGTGGATCAGATGAAGGGAT+TGG | 0.566186 | 4.3:-27335553 | MS.gene56402:CDS |
| CGACCTTACTCCTCCTGCCG+TGG | 0.566388 | 4.3:-27337613 | MS.gene56402:CDS |
| GGTTATCAATGGTTTAGAGA+AGG | 0.568136 | 4.3:-27337562 | MS.gene56402:CDS |
| TACGATGTCTTAGACAAGCT+TGG | 0.568721 | 4.3:-27336198 | MS.gene56402:CDS |
| CATTTGCCTTACACACGCAA+TGG | 0.572460 | 4.3:-27337244 | MS.gene56402:CDS |
| GGATGTTAGAGGAGTTGCAT+TGG | 0.576031 | 4.3:-27337658 | MS.gene56402:CDS |
| GCGGCGTGGTTGATAACAAA+GGG | 0.576808 | 4.3:-27336017 | MS.gene56402:CDS |
| ATTTAGACCCTGTGACTCGA+GGG | 0.578792 | 4.3:+27337493 | None:intergenic |
| CAAAGGAGTTCAGCTTAACA+AGG | 0.582640 | 4.3:-27335821 | MS.gene56402:CDS |
| CCTTACTCCTCCTGCCGTGG+AGG | 0.582653 | 4.3:-27337610 | MS.gene56402:CDS |
| AACTTGCAATCATCTGCTCA+AGG | 0.583771 | 4.3:-27334757 | MS.gene56402:CDS |
| GTTAGAGGAGTTGCATTGGA+AGG | 0.585950 | 4.3:-27337654 | MS.gene56402:CDS |
| TCTCTGCATCTCAAACCTGA+TGG | 0.591260 | 4.3:-27336159 | MS.gene56402:CDS |
| AGTGGAGTTTCATAATGCAA+AGG | 0.592830 | 4.3:+27337028 | None:intergenic |
| ATATTGTAAATCAGGCTGAT+GGG | 0.593285 | 4.3:+27334528 | None:intergenic |
| ATGTTGCTGTACAGGAAGGG+AGG | 0.593434 | 4.3:-27335183 | MS.gene56402:intron |
| AAGAATTGGACAAGATTAGG+AGG | 0.597154 | 4.3:-27337695 | MS.gene56402:CDS |
| GATATTGCCTCCACGGCAGG+AGG | 0.597822 | 4.3:+27337603 | None:intergenic |
| AAGATTAGGAGGCTTCAGAA+TGG | 0.602089 | 4.3:-27337684 | MS.gene56402:CDS |
| ATGGTAAGAATGAAGCTTGG+TGG | 0.602153 | 4.3:-27335571 | MS.gene56402:CDS |
| GAAATGGTAAGAATGAAGCT+TGG | 0.602393 | 4.3:-27335574 | MS.gene56402:CDS |
| ACTCTCTGATATTGCCTCCA+CGG | 0.605057 | 4.3:+27337596 | None:intergenic |
| TCCCGAGGACAAAATTGCCA+TGG | 0.605099 | 4.3:-27336112 | MS.gene56402:CDS |
| GGAAGGGAGGCTTAAAGGGT+GGG | 0.606977 | 4.3:-27335170 | MS.gene56402:CDS |
| GACGCGACCCTCGAGTCACA+GGG | 0.611240 | 4.3:-27337500 | MS.gene56402:CDS |
| GATACCGATGTTGACAGAAG+CGG | 0.611913 | 4.3:-27336036 | MS.gene56402:CDS |
| AATTTAGACCCTGTGACTCG+AGG | 0.613432 | 4.3:+27337492 | None:intergenic |
| AATGTGCTCATGAAACAAGC+GGG | 0.613902 | 4.3:+27337399 | None:intergenic |
| AAATGCTAAAGCAAAAGGAT+CGG | 0.620165 | 4.3:-27335458 | MS.gene56402:CDS |
| GAAGCATCATAGACAAATGG+AGG | 0.622415 | 4.3:+27337372 | None:intergenic |
| TGCTAAAGCAAAAGGATCGG+AGG | 0.622933 | 4.3:-27335455 | MS.gene56402:CDS |
| GGAGTTCAGCTTAACAAGGA+GGG | 0.622995 | 4.3:-27335817 | MS.gene56402:CDS |
| CAATGTGCTCATGAAACAAG+CGG | 0.623267 | 4.3:+27337398 | None:intergenic |
| GACACCCTAACATTCTCAAG+AGG | 0.625174 | 4.3:+27337528 | None:intergenic |
| CGACATGCTTGTACGAGCAT+CGG | 0.627032 | 4.3:+27335915 | None:intergenic |
| AGGAAGGGAGGCTTAAAGGG+TGG | 0.627499 | 4.3:-27335171 | MS.gene56402:CDS |
| AGCGGCGTGGTTGATAACAA+AGG | 0.627508 | 4.3:-27336018 | MS.gene56402:CDS |
| AGCTTGGTGGATCAGATGAA+GGG | 0.629122 | 4.3:-27335558 | MS.gene56402:CDS |
| AATGCTGGAAACGGTTCAGG+AGG | 0.629528 | 4.3:-27336231 | MS.gene56402:CDS |
| TACCGAAATGTCATTGACAA+AGG | 0.633169 | 4.3:-27335838 | MS.gene56402:CDS |
| ATGATTGAAACATCTGGTCA+CGG | 0.638606 | 4.3:-27335778 | MS.gene56402:CDS |
| TGCAAAGTATGATGAAGTAG+TGG | 0.641435 | 4.3:-27337724 | MS.gene56402:CDS |
| AACATGGTTGGGTACACATG+AGG | 0.643450 | 4.3:-27334810 | MS.gene56402:CDS |
| AAAGTATCAAACAATGAACA+TGG | 0.643511 | 4.3:-27334835 | MS.gene56402:CDS |
| GCACCTAAGAGAAATCATCA+AGG | 0.645515 | 4.3:-27337065 | MS.gene56402:CDS |
| AACCAACGCGGTATAAACAA+TGG | 0.648208 | 4.3:+27335860 | None:intergenic |
| TTTAAGCAGAGTAGACACTC+TGG | 0.648407 | 4.3:+27337129 | None:intergenic |
| GGGTGGGAGTTAGACTCATG+TGG | 0.663424 | 4.3:-27335154 | MS.gene56402:CDS |
| GGGTGTCATTTGTATCAACA+AGG | 0.663565 | 4.3:+27335107 | None:intergenic |
| AGGAGTTCAGCTTAACAAGG+AGG | 0.668823 | 4.3:-27335818 | MS.gene56402:CDS |
| CGATGTTGACAGAAGCGGCG+TGG | 0.670101 | 4.3:-27336031 | MS.gene56402:CDS |
| TTGAGCATCAATATGAGCCG+GGG | 0.674597 | 4.3:+27335087 | None:intergenic |
| TAATGAAGGGGCCTACATGG+TGG | 0.680927 | 4.3:-27335611 | MS.gene56402:intron |
| TGTTGATACAAATGACACCC+CGG | 0.681662 | 4.3:-27335104 | MS.gene56402:CDS |
| AAAGTATGATGAAGTAGTGG+TGG | 0.692926 | 4.3:-27337721 | MS.gene56402:CDS |
| TAATCACATTCCCAATCCCG+AGG | 0.693986 | 4.3:-27336127 | MS.gene56402:CDS |
| AAGTTTATAACTGATAGAGG+AGG | 0.701127 | 4.3:-27335886 | MS.gene56402:CDS |
| TTGCAATCATCTGCTCAAGG+AGG | 0.704569 | 4.3:-27334754 | MS.gene56402:CDS |
| TGACATTTCGGTAACCAACG+CGG | 0.705467 | 4.3:+27335848 | None:intergenic |
| CACGCCGCTTCTGTCAACAT+CGG | 0.714678 | 4.3:+27336032 | None:intergenic |
| AACATTTCGAAACTACATCG+AGG | 0.755001 | 4.3:-27335425 | MS.gene56402:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATTTATTTTTTACAAAAA+AGG | - | chr4.3:27337484-27337503 | MS.gene56402:CDS | 10.0% |
| !! | AAGATCTTAATATATTGAAT+AGG | + | chr4.3:27335530-27335549 | None:intergenic | 15.0% |
| !! | AGATCTTAATATATTGAATA+GGG | + | chr4.3:27335529-27335548 | None:intergenic | 15.0% |
| !! | ATTCAATATATTAAGATCTT+AGG | - | chr4.3:27335530-27335549 | MS.gene56402:CDS | 15.0% |
| !! | TGAAAAAATCCTTATATTTA+AGG | + | chr4.3:27337453-27337472 | None:intergenic | 15.0% |
| !! | TGCAATAATAATTGAATAAA+AGG | + | chr4.3:27337817-27337836 | None:intergenic | 15.0% |
| !! | TTCTGTATATATATAATGAA+GGG | - | chr4.3:27336811-27336830 | MS.gene56402:intron | 15.0% |
| !! | TTTCTGTATATATATAATGA+AGG | - | chr4.3:27336810-27336829 | MS.gene56402:intron | 15.0% |
| !!! | AAATTTTCAAAGAAAATAGA+GGG | + | chr4.3:27336136-27336155 | None:intergenic | 15.0% |
| !!! | TAAATTTTCAAAGAAAATAG+AGG | + | chr4.3:27336137-27336156 | None:intergenic | 15.0% |
| !!! | TTATTTTTTACAAAAAAGGA+CGG | - | chr4.3:27337488-27337507 | MS.gene56402:CDS | 15.0% |
| !! | CTTATTACAGATTTATTGAA+TGG | + | chr4.3:27334673-27334692 | None:intergenic | 20.0% |
| !! | GAAATTTCTCCTTAAATATA+AGG | - | chr4.3:27337441-27337460 | MS.gene56402:CDS | 20.0% |
| !! | GGTGAAAATTATAATTGAAA+TGG | - | chr4.3:27336845-27336864 | MS.gene56402:intron | 20.0% |
| !! | TACACGTATATAAAAAATTG+TGG | + | chr4.3:27337122-27337141 | None:intergenic | 20.0% |
| !! | TCTGTATATATATAATGAAG+GGG | - | chr4.3:27336812-27336831 | MS.gene56402:intron | 20.0% |
| !!! | ATTATGTATAGTACTTTTGA+AGG | + | chr4.3:27335117-27335136 | None:intergenic | 20.0% |
| !!! | ATTGATAAGTTTGTTGAAAA+TGG | - | chr4.3:27337884-27337903 | MS.gene56402:CDS | 20.0% |
| !!! | TTTAGAATAATAAATCTGAG+TGG | + | chr4.3:27337756-27337775 | None:intergenic | 20.0% |
| ! | AATATATTGAATAGGGCATA+AGG | + | chr4.3:27335522-27335541 | None:intergenic | 25.0% |
| ! | AATTGCATTTAGACTTAGTT+TGG | + | chr4.3:27336057-27336076 | None:intergenic | 25.0% |
| ! | ACTAAGTTTATAACTGATAG+AGG | - | chr4.3:27336546-27336565 | MS.gene56402:intron | 25.0% |
| ! | ACTAGTTAAACTGTTCAATT+CGG | + | chr4.3:27335588-27335607 | None:intergenic | 25.0% |
| ! | ATTAGTTAAACTCATGTTCA+TGG | - | chr4.3:27336724-27336743 | MS.gene56402:intron | 25.0% |
| ! | ATTTAGAAGATACCAAATAC+AGG | + | chr4.3:27335491-27335510 | None:intergenic | 25.0% |
| ! | CAAAATGTGCTTATAAATAG+AGG | + | chr4.3:27337416-27337435 | None:intergenic | 25.0% |
| ! | GTAATAAGTGTGAAATGTTA+TGG | - | chr4.3:27334685-27334704 | MS.gene56402:intron | 25.0% |
| ! | GTTATTTATTCAACAGATGA+CGG | - | chr4.3:27335163-27335182 | MS.gene56402:CDS | 25.0% |
| ! | TAAATCAGATAACCAAATCA+TGG | + | chr4.3:27337793-27337812 | None:intergenic | 25.0% |
| ! | TATTAAGATCTTAGGAACTA+CGG | - | chr4.3:27335538-27335557 | MS.gene56402:CDS | 25.0% |
| ! | TATTTATTAGAGCCATGATT+TGG | - | chr4.3:27337778-27337797 | MS.gene56402:CDS | 25.0% |
| ! | TCGTAAATATGCAAATAGAT+TGG | - | chr4.3:27335283-27335302 | MS.gene56402:intron | 25.0% |
| ! | TTAATTTAAACATGACCTAG+AGG | - | chr4.3:27335793-27335812 | MS.gene56402:CDS | 25.0% |
| !! | AAAGTATCAAACAATGAACA+TGG | - | chr4.3:27337600-27337619 | MS.gene56402:CDS | 25.0% |
| !! | ATTGATTTCATCGATATTTG+AGG | - | chr4.3:27337155-27337174 | MS.gene56402:CDS | 25.0% |
| !! | ATTTAGACTTAGTTTGGATT+AGG | + | chr4.3:27336051-27336070 | None:intergenic | 25.0% |
| !! | CATAAAAACTGACTTTATTG+AGG | - | chr4.3:27337564-27337583 | MS.gene56402:CDS | 25.0% |
| !! | CTCTATTTATAAGCACATTT+TGG | - | chr4.3:27337414-27337433 | MS.gene56402:CDS | 25.0% |
| !!! | CATTGTGGTTATTTTAAAAG+TGG | - | chr4.3:27337220-27337239 | MS.gene56402:CDS | 25.0% |
| !!! | TGAAATTTTTTACGAAGAGA+GGG | - | chr4.3:27335216-27335235 | MS.gene56402:intron | 25.0% |
| !!! | TTGAAATTTTTTACGAAGAG+AGG | - | chr4.3:27335215-27335234 | MS.gene56402:intron | 25.0% |
| AAAGCTAGTTGAAGTTTAGT+TGG | + | chr4.3:27337048-27337067 | None:intergenic | 30.0% | |
| AAATAACTGAACCGTAAACA+GGG | + | chr4.3:27335740-27335759 | None:intergenic | 30.0% | |
| AAATGCTAAAGCAAAAGGAT+CGG | - | chr4.3:27336977-27336996 | MS.gene56402:intron | 30.0% | |
| AACAAAGGGAATCCAATAAA+CGG | - | chr4.3:27336432-27336451 | MS.gene56402:intron | 30.0% | |
| AAGTTTATAACTGATAGAGG+AGG | - | chr4.3:27336549-27336568 | MS.gene56402:intron | 30.0% | |
| AATGGTTTAGAGAAGGAAAA+AGG | - | chr4.3:27334880-27334899 | MS.gene56402:intron | 30.0% | |
| AATGTGCTTATAAATAGAGG+CGG | + | chr4.3:27337413-27337432 | None:intergenic | 30.0% | |
| ACTTTATTGAGGCAAATCAA+GGG | - | chr4.3:27337575-27337594 | MS.gene56402:CDS | 30.0% | |
| ATAATAGTGAATGCTGGAAA+CGG | - | chr4.3:27336195-27336214 | MS.gene56402:CDS | 30.0% | |
| ATATCCTCTTGAGAATGTTA+GGG | - | chr4.3:27334903-27334922 | MS.gene56402:intron | 30.0% | |
| ATATCTTTGCAAACCAAACT+TGG | - | chr4.3:27334631-27334650 | MS.gene56402:intron | 30.0% | |
| ATATTGATGCTCAAATGTAC+AGG | - | chr4.3:27337357-27337376 | MS.gene56402:intron | 30.0% | |
| ATGAAGAATTGGACAAGATT+AGG | - | chr4.3:27334737-27334756 | MS.gene56402:CDS | 30.0% | |
| ATTGTATTGAAGGAAAATCC+AGG | - | chr4.3:27336483-27336502 | MS.gene56402:intron | 30.0% | |
| CACAATGTGTCAAAATATGT+AGG | + | chr4.3:27337207-27337226 | None:intergenic | 30.0% | |
| CATCTATAAAACATTCAACG+TGG | + | chr4.3:27336775-27336794 | None:intergenic | 30.0% | |
| CATCTTATGATTGAAACATC+TGG | - | chr4.3:27336651-27336670 | MS.gene56402:intron | 30.0% | |
| CATTATGAAACTCCACTTAA+GGG | - | chr4.3:27335413-27335432 | MS.gene56402:intron | 30.0% | |
| CTTATGAATCAGTAGAACTT+AGG | - | chr4.3:27336931-27336950 | MS.gene56402:intron | 30.0% | |
| TAACTAACTAACCATCATCA+AGG | + | chr4.3:27336704-27336723 | None:intergenic | 30.0% | |
| TATCAATTTGAGCAATGTCT+AGG | + | chr4.3:27337871-27337890 | None:intergenic | 30.0% | |
| TATGATGCTTCAATAATGGT+CGG | - | chr4.3:27335075-27335094 | MS.gene56402:intron | 30.0% | |
| TGTCTATGATGCTTCAATAA+TGG | - | chr4.3:27335071-27335090 | MS.gene56402:intron | 30.0% | |
| TGTTACTATCATTCTTTGCT+AGG | - | chr4.3:27334601-27334620 | MS.gene56402:intron | 30.0% | |
| TTAGAAAATTCAGCTGATCT+TGG | - | chr4.3:27336366-27336385 | MS.gene56402:intron | 30.0% | |
| TTGTTACATATGCCTGTATT+TGG | - | chr4.3:27335476-27335495 | MS.gene56402:CDS | 30.0% | |
| ! | AACTAAACTTCAACTAGCTT+TGG | - | chr4.3:27337047-27337066 | MS.gene56402:CDS | 30.0% |
| ! | ATTGAAGCATCATAGACAAA+TGG | + | chr4.3:27335069-27335088 | None:intergenic | 30.0% |
| ! | CAAAGATGTTGAGAATTTTG+CGG | + | chr4.3:27334557-27334576 | None:intergenic | 30.0% |
| ! | CTCATGAAATCAACTTTTGT+TGG | + | chr4.3:27335338-27335357 | None:intergenic | 30.0% |
| ! | TATAATTTTCACCACCATGT+AGG | + | chr4.3:27336838-27336857 | None:intergenic | 30.0% |
| ! | TGGATTTTCCTTCAATACAA+TGG | + | chr4.3:27336484-27336503 | None:intergenic | 30.0% |
| ! | TTTTTACAAAAAAGGACGGA+GGG | - | chr4.3:27337492-27337511 | MS.gene56402:CDS | 30.0% |
| !! | CTAAATGCAATTTTGAAGAG+AGG | - | chr4.3:27336065-27336084 | MS.gene56402:CDS | 30.0% |
| !! | CTAAGTTCTACTGATTCATA+AGG | + | chr4.3:27336933-27336952 | None:intergenic | 30.0% |
| !! | TTTATAAGCACATTTTGGAG+AGG | - | chr4.3:27337419-27337438 | MS.gene56402:CDS | 30.0% |
| !!! | AAATTTTTTACGAAGAGAGG+GGG | - | chr4.3:27335218-27335237 | MS.gene56402:intron | 30.0% |
| !!! | CTACATATTTTGACACATTG+TGG | - | chr4.3:27337205-27337224 | MS.gene56402:CDS | 30.0% |
| !!! | GAAATTTTTTACGAAGAGAG+GGG | - | chr4.3:27335217-27335236 | MS.gene56402:intron | 30.0% |
| !!! | TTTTTTACAAAAAAGGACGG+AGG | - | chr4.3:27337491-27337510 | MS.gene56402:CDS | 30.0% |
| AAAGTATGATGAAGTAGTGG+TGG | - | chr4.3:27334714-27334733 | MS.gene56402:intron | 35.0% | |
| AACAATGAACATGGACAACA+TGG | - | chr4.3:27337609-27337628 | MS.gene56402:CDS | 35.0% | |
| AACATTTCGAAACTACATCG+AGG | - | chr4.3:27337010-27337029 | MS.gene56402:intron | 35.0% | |
| AAGAATTGGACAAGATTAGG+AGG | - | chr4.3:27334740-27334759 | MS.gene56402:CDS | 35.0% | |
| ACATGAATTGACCCTGTTTA+CGG | - | chr4.3:27335726-27335745 | MS.gene56402:intron | 35.0% | |
| ACTAACCATCATCAAGGAAA+TGG | + | chr4.3:27336698-27336717 | None:intergenic | 35.0% | |
| AGAAGATGAGAAACCAAGTT+TGG | + | chr4.3:27334647-27334666 | None:intergenic | 35.0% | |
| AGTGGAGTTTCATAATGCAA+AGG | + | chr4.3:27335410-27335429 | None:intergenic | 35.0% | |
| ATGAGTTTGTCACCGTTTAT+TGG | + | chr4.3:27336447-27336466 | None:intergenic | 35.0% | |
| ATGATTGAAACATCTGGTCA+CGG | - | chr4.3:27336657-27336676 | MS.gene56402:intron | 35.0% | |
| ATGCCAGCTTATGAGTTAAA+AGG | + | chr4.3:27336012-27336031 | None:intergenic | 35.0% | |
| ATGGTCGGTTACATAAAACT+TGG | - | chr4.3:27335090-27335109 | MS.gene56402:CDS | 35.0% | |
| ATTTGAATACAGCGCATTAC+AGG | + | chr4.3:27336102-27336121 | None:intergenic | 35.0% | |
| ATTTGAGCATCAATATGAGC+CGG | + | chr4.3:27337353-27337372 | None:intergenic | 35.0% | |
| CAAATAACTGAACCGTAAAC+AGG | + | chr4.3:27335741-27335760 | None:intergenic | 35.0% | |
| CTACAGATAATAGTGAATGC+TGG | - | chr4.3:27336189-27336208 | MS.gene56402:CDS | 35.0% | |
| CTATGGTTATTTGAGTGGTT+CGG | - | chr4.3:27335634-27335653 | MS.gene56402:intron | 35.0% | |
| CTCCTTTGTCAATGACATTT+CGG | + | chr4.3:27336602-27336621 | None:intergenic | 35.0% | |
| GAAAACCATTTCCTTGATGA+TGG | - | chr4.3:27336690-27336709 | MS.gene56402:intron | 35.0% | |
| GAAATGGTAAGAATGAAGCT+TGG | - | chr4.3:27336861-27336880 | MS.gene56402:intron | 35.0% | |
| GACTTTATTGAGGCAAATCA+AGG | - | chr4.3:27337574-27337593 | MS.gene56402:CDS | 35.0% | |
| GATATCCTCTTGAGAATGTT+AGG | - | chr4.3:27334902-27334921 | MS.gene56402:intron | 35.0% | |
| GCATTATGAAACTCCACTTA+AGG | - | chr4.3:27335412-27335431 | MS.gene56402:intron | 35.0% | |
| GGTTATCAATGGTTTAGAGA+AGG | - | chr4.3:27334873-27334892 | MS.gene56402:intron | 35.0% | |
| GGTTGTATGGTGTTTGATAT+GGG | - | chr4.3:27335000-27335019 | MS.gene56402:intron | 35.0% | |
| TAAATGAGAGAGCTTCTCAA+AGG | + | chr4.3:27335985-27336004 | None:intergenic | 35.0% | |
| TACCGAAATGTCATTGACAA+AGG | - | chr4.3:27336597-27336616 | MS.gene56402:intron | 35.0% | |
| TGCAAAGTATGATGAAGTAG+TGG | - | chr4.3:27334711-27334730 | MS.gene56402:intron | 35.0% | |
| TGGTTGTATGGTGTTTGATA+TGG | - | chr4.3:27334999-27335018 | MS.gene56402:intron | 35.0% | |
| TTTATGTTGCTGTACAGGAA+GGG | - | chr4.3:27337249-27337268 | MS.gene56402:CDS | 35.0% | |
| ! | AGGCAATATCAGAGAGTTTT+GGG | - | chr4.3:27334845-27334864 | MS.gene56402:intron | 35.0% |
| ! | TCTCCTTGATGATTTCTCTT+AGG | + | chr4.3:27335376-27335395 | None:intergenic | 35.0% |
| ! | TTTTATGTTGCTGTACAGGA+AGG | - | chr4.3:27337248-27337267 | MS.gene56402:CDS | 35.0% |
| !! | CTTCCTTTTAACTCATAAGC+TGG | - | chr4.3:27336006-27336025 | MS.gene56402:CDS | 35.0% |
| !! | GTGTTTTTATGTTGCTGTAC+AGG | - | chr4.3:27337244-27337263 | MS.gene56402:CDS | 35.0% |
| !!! | AATTTTTTACGAAGAGAGGG+GGG | - | chr4.3:27335219-27335238 | MS.gene56402:intron | 35.0% |
| AACCAACGCGGTATAAACAA+TGG | + | chr4.3:27336578-27336597 | None:intergenic | 40.0% | |
| AACTCCACTTAAGGGATTTC+AGG | - | chr4.3:27335421-27335440 | MS.gene56402:intron | 40.0% | |
| AACTTGCAATCATCTGCTCA+AGG | - | chr4.3:27337678-27337697 | MS.gene56402:CDS | 40.0% | |
| AAGATTAGGAGGCTTCAGAA+TGG | - | chr4.3:27334751-27334770 | MS.gene56402:CDS | 40.0% | |
| AATGTGCTCATGAAACAAGC+GGG | + | chr4.3:27335039-27335058 | None:intergenic | 40.0% | |
| AATTAGCAATGCCTGCACTA+TGG | - | chr4.3:27335617-27335636 | MS.gene56402:intron | 40.0% | |
| AGACTCATGTGGTGATTGTT+GGG | - | chr4.3:27337292-27337311 | MS.gene56402:intron | 40.0% | |
| ATATAATGAAGGGGCCTACA+TGG | - | chr4.3:27336821-27336840 | MS.gene56402:intron | 40.0% | |
| ATGAACATGGACAACATGGT+TGG | - | chr4.3:27337613-27337632 | MS.gene56402:CDS | 40.0% | |
| ATGGTAAGAATGAAGCTTGG+TGG | - | chr4.3:27336864-27336883 | MS.gene56402:intron | 40.0% | |
| ATTGAATAGGGCATAAGGCA+AGG | + | chr4.3:27335517-27335536 | None:intergenic | 40.0% | |
| CAAACCTGAAATCCCTTAAG+TGG | + | chr4.3:27335428-27335447 | None:intergenic | 40.0% | |
| CAAAGGAGTTCAGCTTAACA+AGG | - | chr4.3:27336614-27336633 | MS.gene56402:intron | 40.0% | |
| CAATGTGCTCATGAAACAAG+CGG | + | chr4.3:27335040-27335059 | None:intergenic | 40.0% | |
| CACTCAAATAACCATAGTGC+AGG | + | chr4.3:27335631-27335650 | None:intergenic | 40.0% | |
| CAGTTTAACCATGACTCAGA+CGG | - | chr4.3:27335690-27335709 | MS.gene56402:intron | 40.0% | |
| CATAAGCTGGCATAAAGCAT+AGG | - | chr4.3:27336019-27336038 | MS.gene56402:CDS | 40.0% | |
| CCTCGAAATGCTAAAGCAAA+AGG | - | chr4.3:27336972-27336991 | MS.gene56402:intron | 40.0% | |
| CTGCACTATGGTTATTTGAG+TGG | - | chr4.3:27335629-27335648 | MS.gene56402:intron | 40.0% | |
| GCAAGTTCACAGCAATGTTT+GGG | + | chr4.3:27337665-27337684 | None:intergenic | 40.0% | |
| GCACCTAAGAGAAATCATCA+AGG | - | chr4.3:27335370-27335389 | MS.gene56402:intron | 40.0% | |
| GGAACTACGGCATTTATGAT+AGG | - | chr4.3:27335551-27335570 | MS.gene56402:CDS | 40.0% | |
| TACGATGTCTTAGACAAGCT+TGG | - | chr4.3:27336237-27336256 | MS.gene56402:CDS | 40.0% | |
| TAGACTCATGTGGTGATTGT+TGG | - | chr4.3:27337291-27337310 | MS.gene56402:intron | 40.0% | |
| TGAACATGGACAACATGGTT+GGG | - | chr4.3:27337614-27337633 | MS.gene56402:CDS | 40.0% | |
| TGACAAACTCATTGCTCTCA+TGG | - | chr4.3:27336455-27336474 | MS.gene56402:intron | 40.0% | |
| TGATTAGGAAACATGCCATC+AGG | + | chr4.3:27336294-27336313 | None:intergenic | 40.0% | |
| TGCAAGTTCACAGCAATGTT+TGG | + | chr4.3:27337666-27337685 | None:intergenic | 40.0% | |
| TGCTTATAAATAGAGGCGGA+GGG | + | chr4.3:27337409-27337428 | None:intergenic | 40.0% | |
| TGCTTTAGCATTTCGAGGTT+CGG | + | chr4.3:27336970-27336989 | None:intergenic | 40.0% | |
| TGTTGATACAAATGACACCC+CGG | - | chr4.3:27337331-27337350 | MS.gene56402:intron | 40.0% | |
| TTCAAACCATTGCGTGTGTA+AGG | + | chr4.3:27335200-27335219 | None:intergenic | 40.0% | |
| TTGAATAGGGCATAAGGCAA+GGG | + | chr4.3:27335516-27335535 | None:intergenic | 40.0% | |
| TTTAAGCAGAGTAGACACTC+TGG | + | chr4.3:27335309-27335328 | None:intergenic | 40.0% | |
| TTTCCTTCTCTATGAGTCAG+TGG | + | chr4.3:27335881-27335900 | None:intergenic | 40.0% | |
| TTTGAGCATCAATATGAGCC+GGG | + | chr4.3:27337352-27337371 | None:intergenic | 40.0% | |
| ! | CCTTTTGCTTTAGCATTTCG+AGG | + | chr4.3:27336975-27336994 | None:intergenic | 40.0% |
| ! | CTGCTTTAAACCACTAGAAC+CGG | + | chr4.3:27335673-27335692 | None:intergenic | 40.0% |
| ! | GAAGCATCATAGACAAATGG+AGG | + | chr4.3:27335066-27335085 | None:intergenic | 40.0% |
| ! | GAGGCAATATCAGAGAGTTT+TGG | - | chr4.3:27334844-27334863 | MS.gene56402:intron | 40.0% |
| ! | GGCAATATCAGAGAGTTTTG+GGG | - | chr4.3:27334846-27334865 | MS.gene56402:intron | 40.0% |
| ! | TGAGAATTTTGCGGAAGTAG+AGG | + | chr4.3:27334548-27334567 | None:intergenic | 40.0% |
| ! | TGCAGTTTTCTCAAAGCAAG+TGG | - | chr4.3:27337833-27337852 | MS.gene56402:CDS | 40.0% |
| ! | TGCTTTTCTTGTCATTGCCA+TGG | + | chr4.3:27336343-27336362 | None:intergenic | 40.0% |
| !! | AGTAGTGGTGGATGAAGAAT+TGG | - | chr4.3:27334726-27334745 | MS.gene56402:CDS | 40.0% |
| !! | GGGTGTCATTTGTATCAACA+AGG | + | chr4.3:27337331-27337350 | None:intergenic | 40.0% |
| AACATGGTTGGGTACACATG+AGG | - | chr4.3:27337625-27337644 | MS.gene56402:CDS | 45.0% | |
| AATTTAGACCCTGTGACTCG+AGG | + | chr4.3:27334946-27334965 | None:intergenic | 45.0% | |
| ACATGACCTAGAGGTCTCAT+TGG | - | chr4.3:27335802-27335821 | MS.gene56402:CDS | 45.0% | |
| ACTCTCTGATATTGCCTCCA+CGG | + | chr4.3:27334842-27334861 | None:intergenic | 45.0% | |
| AGGAGTTCAGCTTAACAAGG+AGG | - | chr4.3:27336617-27336636 | MS.gene56402:intron | 45.0% | |
| ATCCAACCAATGAGACCTCT+AGG | + | chr4.3:27335811-27335830 | None:intergenic | 45.0% | |
| ATTTAGACCCTGTGACTCGA+GGG | + | chr4.3:27334945-27334964 | None:intergenic | 45.0% | |
| CACCATTGTTTATACCGCGT+TGG | - | chr4.3:27336573-27336592 | MS.gene56402:intron | 45.0% | |
| CATGACTCAGACGGTTCAAT+CGG | - | chr4.3:27335699-27335718 | MS.gene56402:intron | 45.0% | |
| CATGGCTGCCATTGTATTGA+AGG | - | chr4.3:27336473-27336492 | MS.gene56402:intron | 45.0% | |
| CATTTGCCTTACACACGCAA+TGG | - | chr4.3:27335191-27335210 | MS.gene56402:intron | 45.0% | |
| GACACCCTAACATTCTCAAG+AGG | + | chr4.3:27334910-27334929 | None:intergenic | 45.0% | |
| GATACCGATGTTGACAGAAG+CGG | - | chr4.3:27336399-27336418 | MS.gene56402:intron | 45.0% | |
| GGAGTTCAGCTTAACAAGGA+GGG | - | chr4.3:27336618-27336637 | MS.gene56402:intron | 45.0% | |
| GGATGTTAGAGGAGTTGCAT+TGG | - | chr4.3:27334777-27334796 | MS.gene56402:CDS | 45.0% | |
| GTGATTGTTGGGTGAGTGAA+GGG | - | chr4.3:27337303-27337322 | MS.gene56402:intron | 45.0% | |
| GTGCTTATAAATAGAGGCGG+AGG | + | chr4.3:27337410-27337429 | None:intergenic | 45.0% | |
| GTTAGAGGAGTTGCATTGGA+AGG | - | chr4.3:27334781-27334800 | MS.gene56402:CDS | 45.0% | |
| TAATCACATTCCCAATCCCG+AGG | - | chr4.3:27336308-27336327 | MS.gene56402:intron | 45.0% | |
| TACAGGAAGGGAGGCTTAAA+GGG | - | chr4.3:27337261-27337280 | MS.gene56402:intron | 45.0% | |
| TAGGAGGCTTCAGAATGGTT+CGG | - | chr4.3:27334756-27334775 | MS.gene56402:CDS | 45.0% | |
| TCAAGGAGGTTGCTTGTCAA+TGG | - | chr4.3:27337695-27337714 | MS.gene56402:CDS | 45.0% | |
| TCGGGATTGGGAATGTGATT+AGG | + | chr4.3:27336309-27336328 | None:intergenic | 45.0% | |
| TCGGTTACTATGGTTGATCC+TGG | + | chr4.3:27336504-27336523 | None:intergenic | 45.0% | |
| TCTCTGCATCTCAAACCTGA+TGG | - | chr4.3:27336276-27336295 | MS.gene56402:intron | 45.0% | |
| TGACATTTCGGTAACCAACG+CGG | + | chr4.3:27336590-27336609 | None:intergenic | 45.0% | |
| TGCTAAAGCAAAAGGATCGG+AGG | - | chr4.3:27336980-27336999 | MS.gene56402:intron | 45.0% | |
| TTGAGCATCAATATGAGCCG+GGG | + | chr4.3:27337351-27337370 | None:intergenic | 45.0% | |
| TTGCAATCATCTGCTCAAGG+AGG | - | chr4.3:27337681-27337700 | MS.gene56402:CDS | 45.0% | |
| ! | AAGCTTGGTGGATCAGATGA+AGG | - | chr4.3:27336876-27336895 | MS.gene56402:intron | 45.0% |
| ! | AGCTTGGTGGATCAGATGAA+GGG | - | chr4.3:27336877-27336896 | MS.gene56402:intron | 45.0% |
| ! | CAGAATGGTTCGGATGTTAG+AGG | - | chr4.3:27334766-27334785 | MS.gene56402:CDS | 45.0% |
| ! | GAGAATGTTAGGGTGTCTCT+TGG | - | chr4.3:27334913-27334932 | MS.gene56402:intron | 45.0% |
| ! | GAGCGATCACAGTTTCGTTT+TGG | - | chr4.3:27335760-27335779 | MS.gene56402:CDS | 45.0% |
| ! | GCAATTTTGTCCTCGGGATT+GGG | + | chr4.3:27336321-27336340 | None:intergenic | 45.0% |
| ! | GGTCTCATTGGTTGGATGTT+CGG | - | chr4.3:27335814-27335833 | MS.gene56402:CDS | 45.0% |
| ! | GTGCAGGCATTGCTAATTCA+TGG | + | chr4.3:27335615-27335634 | None:intergenic | 45.0% |
| ! | TGCCATGGCAATTTTGTCCT+CGG | + | chr4.3:27336328-27336347 | None:intergenic | 45.0% |
| ! | TTGAGTGTTGCAGTGTTTGC+CGG | - | chr4.3:27334964-27334983 | MS.gene56402:intron | 45.0% |
| ! | TTTGAGATGCAGAGAGCCAA+AGG | + | chr4.3:27336271-27336290 | None:intergenic | 45.0% |
| !! | AAGCTTGGTGCAGATACCTT+TGG | - | chr4.3:27336252-27336271 | MS.gene56402:intron | 45.0% |
| !! | TCTCCACTGACTCATAGAGA+AGG | - | chr4.3:27335875-27335894 | MS.gene56402:CDS | 45.0% |
| !! | TGTACGAGCATCGGTTACTA+TGG | + | chr4.3:27336514-27336533 | None:intergenic | 45.0% |
| !! | TTTGGGGAGTGGGTTATCAA+TGG | - | chr4.3:27334862-27334881 | MS.gene56402:intron | 45.0% |
| !!! | ATCAGAGAGTTTTGGGGAGT+GGG | - | chr4.3:27334852-27334871 | MS.gene56402:intron | 45.0% |
| !!! | TATCAGAGAGTTTTGGGGAG+TGG | - | chr4.3:27334851-27334870 | MS.gene56402:intron | 45.0% |
| AATGCTGGAAACGGTTCAGG+AGG | - | chr4.3:27336204-27336223 | MS.gene56402:CDS | 50.0% | |
| ATGTTGCTGTACAGGAAGGG+AGG | - | chr4.3:27337252-27337271 | MS.gene56402:CDS | 50.0% | |
| CGACATGCTTGTACGAGCAT+CGG | + | chr4.3:27336523-27336542 | None:intergenic | 50.0% | |
| CGATTGAACCGTCTGAGTCA+TGG | + | chr4.3:27335701-27335720 | None:intergenic | 50.0% | |
| GACCTAGAGGTCTCATTGGT+TGG | - | chr4.3:27335806-27335825 | MS.gene56402:CDS | 50.0% | |
| GGTGATTGTTGGGTGAGTGA+AGG | - | chr4.3:27337302-27337321 | MS.gene56402:intron | 50.0% | |
| GGTGGATCAGATGAAGGGAT+TGG | - | chr4.3:27336882-27336901 | MS.gene56402:intron | 50.0% | |
| GTACAGGAAGGGAGGCTTAA+AGG | - | chr4.3:27337260-27337279 | MS.gene56402:intron | 50.0% | |
| GTGAATGCTGGAAACGGTTC+AGG | - | chr4.3:27336201-27336220 | MS.gene56402:CDS | 50.0% | |
| GTTGCATTGGAAGGCGAGAA+AGG | - | chr4.3:27334790-27334809 | MS.gene56402:CDS | 50.0% | |
| TAATGAAGGGGCCTACATGG+TGG | - | chr4.3:27336824-27336843 | MS.gene56402:intron | 50.0% | |
| TCCCGAGGACAAAATTGCCA+TGG | - | chr4.3:27336323-27336342 | MS.gene56402:intron | 50.0% | |
| ! | CACTTTCGTTCCGGTTCTAG+TGG | - | chr4.3:27335660-27335679 | MS.gene56402:intron | 50.0% |
| ! | GCCATGGCAATTTTGTCCTC+GGG | + | chr4.3:27336327-27336346 | None:intergenic | 50.0% |
| ! | GGCAATTTTGTCCTCGGGAT+TGG | + | chr4.3:27336322-27336341 | None:intergenic | 50.0% |
| !! | AGCGGCGTGGTTGATAACAA+AGG | - | chr4.3:27336417-27336436 | MS.gene56402:intron | 50.0% |
| !! | GCGGCGTGGTTGATAACAAA+GGG | - | chr4.3:27336418-27336437 | MS.gene56402:intron | 50.0% |
| !! | TCTTGCTCGTGCTGGTTGTA+TGG | - | chr4.3:27334987-27335006 | MS.gene56402:intron | 50.0% |
| ACAACCAGCACGAGCAAGAC+CGG | + | chr4.3:27334986-27335005 | None:intergenic | 55.0% | |
| AGGAAGGGAGGCTTAAAGGG+TGG | - | chr4.3:27337264-27337283 | MS.gene56402:intron | 55.0% | |
| CACGCCGCTTCTGTCAACAT+CGG | + | chr4.3:27336406-27336425 | None:intergenic | 55.0% | |
| GGAAGGGAGGCTTAAAGGGT+GGG | - | chr4.3:27337265-27337284 | MS.gene56402:intron | 55.0% | |
| GGGTGGGAGTTAGACTCATG+TGG | - | chr4.3:27337281-27337300 | MS.gene56402:intron | 55.0% | |
| GTTCGGTCGCACTTTCGTTC+CGG | - | chr4.3:27335651-27335670 | MS.gene56402:intron | 55.0% | |
| TCTGATATTGCCTCCACGGC+AGG | + | chr4.3:27334838-27334857 | None:intergenic | 55.0% | |
| CGATGTTGACAGAAGCGGCG+TGG | - | chr4.3:27336404-27336423 | MS.gene56402:intron | 60.0% | |
| GATATTGCCTCCACGGCAGG+AGG | + | chr4.3:27334835-27334854 | None:intergenic | 60.0% | |
| TTTGCCGGTCTTGCTCGTGC+TGG | - | chr4.3:27334979-27334998 | MS.gene56402:intron | 60.0% | |
| CCTCCACGGCAGGAGGAGTA+AGG | + | chr4.3:27334828-27334847 | None:intergenic | 65.0% | |
| CCTTACTCCTCCTGCCGTGG+AGG | - | chr4.3:27334825-27334844 | MS.gene56402:CDS | 65.0% | |
| CGACCTTACTCCTCCTGCCG+TGG | - | chr4.3:27334822-27334841 | MS.gene56402:CDS | 65.0% | |
| GACGCGACCCTCGAGTCACA+GGG | - | chr4.3:27334935-27334954 | MS.gene56402:intron | 65.0% | |
| ! | AGGGGGGCTGACTTCACTGG+AGG | - | chr4.3:27335235-27335254 | MS.gene56402:intron | 65.0% |
| ! | GAGAGGGGGGCTGACTTCAC+TGG | - | chr4.3:27335232-27335251 | MS.gene56402:intron | 65.0% |
| GGACGCGACCCTCGAGTCAC+AGG | - | chr4.3:27334934-27334953 | MS.gene56402:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 27334538 | 27337919 | 27334538 | ID=MS.gene56402 |
| chr4.3 | mRNA | 27334538 | 27337919 | 27334538 | ID=MS.gene56402.t1;Parent=MS.gene56402 |
| chr4.3 | exon | 27337365 | 27337919 | 27337365 | ID=MS.gene56402.t1.exon1;Parent=MS.gene56402.t1 |
| chr4.3 | CDS | 27337365 | 27337919 | 27337365 | ID=cds.MS.gene56402.t1;Parent=MS.gene56402.t1 |
| chr4.3 | exon | 27337015 | 27337278 | 27337015 | ID=MS.gene56402.t1.exon2;Parent=MS.gene56402.t1 |
| chr4.3 | CDS | 27337015 | 27337278 | 27337015 | ID=cds.MS.gene56402.t1;Parent=MS.gene56402.t1 |
| chr4.3 | exon | 27335746 | 27336262 | 27335746 | ID=MS.gene56402.t1.exon3;Parent=MS.gene56402.t1 |
| chr4.3 | CDS | 27335746 | 27336262 | 27335746 | ID=cds.MS.gene56402.t1;Parent=MS.gene56402.t1 |
| chr4.3 | exon | 27335426 | 27335625 | 27335426 | ID=MS.gene56402.t1.exon4;Parent=MS.gene56402.t1 |
| chr4.3 | CDS | 27335426 | 27335625 | 27335426 | ID=cds.MS.gene56402.t1;Parent=MS.gene56402.t1 |
| chr4.3 | exon | 27335079 | 27335191 | 27335079 | ID=MS.gene56402.t1.exon5;Parent=MS.gene56402.t1 |
| chr4.3 | CDS | 27335079 | 27335191 | 27335079 | ID=cds.MS.gene56402.t1;Parent=MS.gene56402.t1 |
| chr4.3 | exon | 27334721 | 27334861 | 27334721 | ID=MS.gene56402.t1.exon6;Parent=MS.gene56402.t1 |
| chr4.3 | CDS | 27334721 | 27334861 | 27334721 | ID=cds.MS.gene56402.t1;Parent=MS.gene56402.t1 |
| chr4.3 | exon | 27334538 | 27334619 | 27334538 | ID=MS.gene56402.t1.exon7;Parent=MS.gene56402.t1 |
| chr4.3 | CDS | 27334538 | 27334619 | 27334538 | ID=cds.MS.gene56402.t1;Parent=MS.gene56402.t1 |
| Gene Sequence |
| Protein sequence |
