Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57665.t1 | XP_003610042.1 | 84.6 | 735 | 14 | 1 | 1 | 636 | 1 | 735 | 0.00E+00 | 1112.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57665.t1 | Q9SZR3 | 27.9 | 946 | 347 | 24 | 1 | 635 | 1 | 922 | 1.3e-61 | 239.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57665.t1 | G7JU94 | 84.6 | 735 | 14 | 1 | 1 | 636 | 1 | 735 | 0.0e+00 | 1112.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene57665 | 0.855769 | 5.05E-62 | -1.69E-46 |
| MS.gene049660 | MS.gene57665 | 0.803302 | 3.72E-49 | -1.69E-46 |
| MS.gene050310 | MS.gene57665 | 0.803932 | 2.75E-49 | -1.69E-46 |
| MS.gene05054 | MS.gene57665 | 0.803799 | 2.93E-49 | -1.69E-46 |
| MS.gene051018 | MS.gene57665 | 0.807447 | 5.03E-50 | -1.69E-46 |
| MS.gene051067 | MS.gene57665 | 0.823525 | 1.32E-53 | -1.69E-46 |
| MS.gene051648 | MS.gene57665 | 0.842018 | 3.34E-58 | -1.69E-46 |
| MS.gene051664 | MS.gene57665 | 0.822293 | 2.56E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene57665 | 0.805658 | 1.20E-49 | -1.69E-46 |
| MS.gene052150 | MS.gene57665 | 0.837501 | 5.01E-57 | -1.69E-46 |
| MS.gene052151 | MS.gene57665 | 0.844409 | 7.70E-59 | -1.69E-46 |
| MS.gene053144 | MS.gene57665 | 0.804729 | 1.88E-49 | -1.69E-46 |
| MS.gene053536 | MS.gene57665 | 0.849092 | 4.04E-60 | -1.69E-46 |
| MS.gene053538 | MS.gene57665 | 0.844773 | 6.14E-59 | -1.69E-46 |
| MS.gene054584 | MS.gene57665 | 0.812181 | 4.82E-51 | -1.69E-46 |
| MS.gene054999 | MS.gene57665 | 0.826533 | 2.57E-54 | -1.69E-46 |
| MS.gene055537 | MS.gene57665 | 0.869522 | 2.91E-66 | -1.69E-46 |
| MS.gene055653 | MS.gene57665 | 0.822597 | 2.18E-53 | -1.69E-46 |
| MS.gene055764 | MS.gene57665 | 0.814074 | 1.85E-51 | -1.69E-46 |
| MS.gene056169 | MS.gene57665 | 0.850312 | 1.84E-60 | -1.69E-46 |
| MS.gene056228 | MS.gene57665 | 0.825263 | 5.16E-54 | -1.69E-46 |
| MS.gene057004 | MS.gene57665 | 0.820577 | 6.37E-53 | -1.69E-46 |
| MS.gene057082 | MS.gene57665 | 0.863533 | 2.33E-64 | -1.69E-46 |
| MS.gene058197 | MS.gene57665 | 0.8305 | 2.84E-55 | -1.69E-46 |
| MS.gene058198 | MS.gene57665 | 0.825134 | 5.53E-54 | -1.69E-46 |
| MS.gene058668 | MS.gene57665 | 0.815941 | 7.14E-52 | -1.69E-46 |
| MS.gene058823 | MS.gene57665 | 0.826508 | 2.61E-54 | -1.69E-46 |
| MS.gene058909 | MS.gene57665 | 0.80317 | 3.96E-49 | -1.69E-46 |
| MS.gene058912 | MS.gene57665 | 0.801446 | 8.97E-49 | -1.69E-46 |
| MS.gene05894 | MS.gene57665 | 0.868658 | 5.54E-66 | -1.69E-46 |
| MS.gene059300 | MS.gene57665 | 0.84288 | 1.97E-58 | -1.69E-46 |
| MS.gene059424 | MS.gene57665 | 0.841264 | 5.28E-58 | -1.69E-46 |
| MS.gene06057 | MS.gene57665 | 0.811746 | 6.00E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57665.t1 | MTR_4g127290 | 97.283 | 552 | 15 | 0 | 85 | 636 | 184 | 735 | 0.0 | 1093 |
| MS.gene57665.t1 | MTR_4g127290 | 100.000 | 85 | 0 | 0 | 1 | 85 | 1 | 85 | 3.60e-48 | 181 |
| MS.gene57665.t1 | MTR_2g038200 | 51.184 | 549 | 183 | 16 | 148 | 635 | 399 | 923 | 1.41e-146 | 451 |
| MS.gene57665.t1 | MTR_2g038200 | 71.765 | 85 | 20 | 1 | 1 | 85 | 1 | 81 | 3.32e-25 | 111 |
| MS.gene57665.t1 | MTR_1g057150 | 53.684 | 95 | 37 | 1 | 1 | 95 | 1 | 88 | 7.93e-24 | 107 |
| MS.gene57665.t1 | MTR_4g129230 | 59.524 | 84 | 30 | 1 | 1 | 84 | 1 | 80 | 3.57e-20 | 95.9 |
| MS.gene57665.t1 | MTR_4g129230 | 20.120 | 502 | 280 | 13 | 192 | 610 | 454 | 917 | 1.57e-11 | 68.2 |
| MS.gene57665.t1 | MTR_1g090640 | 54.651 | 86 | 31 | 2 | 1 | 85 | 1 | 79 | 1.53e-19 | 93.6 |
| MS.gene57665.t1 | MTR_3g464150 | 27.832 | 309 | 159 | 13 | 350 | 610 | 682 | 974 | 2.26e-13 | 73.9 |
| MS.gene57665.t1 | MTR_5g071060 | 26.117 | 291 | 139 | 9 | 350 | 582 | 650 | 922 | 6.69e-13 | 72.4 |
| MS.gene57665.t1 | MTR_5g071060 | 26.117 | 291 | 139 | 9 | 350 | 582 | 683 | 955 | 7.50e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57665.t1 | AT4G29920 | 37.718 | 517 | 271 | 18 | 148 | 635 | 431 | 925 | 1.37e-74 | 258 |
| MS.gene57665.t1 | AT4G29920 | 65.169 | 89 | 27 | 3 | 1 | 85 | 1 | 89 | 1.26e-21 | 100 |
| MS.gene57665.t1 | AT4G29920 | 37.524 | 517 | 269 | 18 | 148 | 635 | 431 | 922 | 6.72e-74 | 256 |
| MS.gene57665.t1 | AT4G29920 | 65.169 | 89 | 27 | 3 | 1 | 85 | 1 | 89 | 1.23e-21 | 100 |
| MS.gene57665.t1 | AT5G57130 | 34.211 | 494 | 261 | 21 | 147 | 615 | 468 | 922 | 4.58e-54 | 200 |
| MS.gene57665.t1 | AT5G57130 | 61.386 | 101 | 22 | 2 | 1 | 85 | 1 | 100 | 2.20e-26 | 115 |
| MS.gene57665.t1 | AT3G52490 | 54.902 | 102 | 35 | 2 | 1 | 98 | 1 | 95 | 1.49e-25 | 112 |
| MS.gene57665.t1 | AT3G52490 | 24.688 | 401 | 223 | 10 | 144 | 488 | 365 | 742 | 1.17e-19 | 94.0 |
| MS.gene57665.t1 | AT5G57710 | 57.143 | 84 | 32 | 1 | 1 | 84 | 1 | 80 | 3.32e-19 | 92.8 |
| MS.gene57665.t1 | AT4G30350 | 23.325 | 403 | 214 | 13 | 165 | 518 | 409 | 765 | 6.11e-18 | 88.6 |
| MS.gene57665.t1 | AT4G30350 | 54.762 | 84 | 34 | 1 | 1 | 84 | 1 | 80 | 1.23e-17 | 87.8 |
| MS.gene57665.t1 | AT1G07200 | 22.874 | 341 | 201 | 12 | 190 | 490 | 453 | 771 | 4.90e-11 | 66.6 |
Find 102 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCAATTCTAGGGTTCT+TGG | 0.166740 | 8.4:-7406829 | None:intergenic |
| CCTAATAGCATTTCAGAAAA+TGG | 0.180008 | 8.4:-7406516 | None:intergenic |
| AGAAGAAAACATTGCCTTTC+TGG | 0.197917 | 8.4:+7405671 | MS.gene57665:CDS |
| AGTTTAATTTCAATGATAAA+AGG | 0.216333 | 8.4:+7406118 | MS.gene57665:CDS |
| AATTCTAGGGTTCTTGGTTT+TGG | 0.217523 | 8.4:-7406823 | None:intergenic |
| TGCCCCTATTCCAGTGATTT+TGG | 0.219820 | 8.4:-7405993 | None:intergenic |
| CTGAGAGAAATTTCATGAAT+TGG | 0.260874 | 8.4:-7406599 | None:intergenic |
| CTCTTGGGGCTCAAGAAATT+AGG | 0.268217 | 8.4:-7406777 | None:intergenic |
| GTTTCAATGTAGCTCTTAAT+AGG | 0.268715 | 8.4:+7404349 | MS.gene57665:CDS |
| AGTAACAAAGAGGGGAATTT+AGG | 0.272164 | 8.4:+7406654 | MS.gene57665:CDS |
| GCTTGACCCTTCATTCTTCC+AGG | 0.278647 | 8.4:+7404865 | MS.gene57665:CDS |
| CTCTCAGATGGATATGAAAA+AGG | 0.296673 | 8.4:+7406615 | MS.gene57665:CDS |
| TAACCGAGTTGAAAAGAAAA+TGG | 0.298255 | 8.4:+7405932 | MS.gene57665:CDS |
| AGAAACACATTTGAATTCAA+TGG | 0.324155 | 8.4:-7407014 | None:intergenic |
| GATTCCATTGCAAGCATAGA+AGG | 0.340258 | 8.4:+7406162 | MS.gene57665:CDS |
| GGGTTGTTGATTTCTGAAAA+AGG | 0.340530 | 8.4:+7406861 | MS.gene57665:CDS |
| AGCTGATTTGGTCCTTCAAT+TGG | 0.342833 | 8.4:+7406464 | MS.gene57665:CDS |
| CTAATAGCATTTCAGAAAAT+GGG | 0.352190 | 8.4:-7406515 | None:intergenic |
| ATTCTCTTGTGTTGGCTAGA+AGG | 0.358333 | 8.4:+7404178 | MS.gene57665:CDS |
| TTTGAAGGAACTTAGTCTTA+AGG | 0.360363 | 8.4:-7404250 | None:intergenic |
| TTTCAGACAGAACAATTTCA+TGG | 0.360555 | 8.4:+7404746 | MS.gene57665:CDS |
| AAAGCCCTTTAGCAGTAATA+AGG | 0.361117 | 8.4:+7405567 | MS.gene57665:CDS |
| TGGCACAGAAGAACAAAATA+AGG | 0.368675 | 8.4:+7405705 | MS.gene57665:CDS |
| GCACCAAAATCACTGGAATA+GGG | 0.370902 | 8.4:+7405990 | MS.gene57665:CDS |
| AGCACCAAAATCACTGGAAT+AGG | 0.372688 | 8.4:+7405989 | MS.gene57665:CDS |
| TAAGACTAAGTTCCTTCAAA+AGG | 0.375696 | 8.4:+7404253 | MS.gene57665:CDS |
| ATCATTGAAATTAAACTCAA+TGG | 0.376365 | 8.4:-7406112 | None:intergenic |
| TGAGAGAAATTTCATGAATT+GGG | 0.385237 | 8.4:-7406598 | None:intergenic |
| CCTTTCTGGCTTCAGTCTCA+TGG | 0.390835 | 8.4:+7405685 | MS.gene57665:CDS |
| TTGTTTCCAGCATATGAGAT+AGG | 0.393515 | 8.4:-7405546 | None:intergenic |
| GTTCTTCTCTTCAATGCTTG+TGG | 0.404826 | 8.4:-7406709 | None:intergenic |
| TTTCATTCTCTTCAATTCTA+GGG | 0.410585 | 8.4:-7406836 | None:intergenic |
| CTGTGATTCTCACTAGTTGA+AGG | 0.411339 | 8.4:-7404702 | None:intergenic |
| CAGCTTTCATGTTCAGATCA+AGG | 0.421676 | 8.4:-7406932 | None:intergenic |
| GTTTAATTTCAATGATAAAA+GGG | 0.427762 | 8.4:+7406119 | MS.gene57665:CDS |
| TGCACCTTATTACTGCTAAA+GGG | 0.429521 | 8.4:-7405571 | None:intergenic |
| GTGGATGTTGTGAAGTTTGA+TGG | 0.431778 | 8.4:-7404302 | None:intergenic |
| AGAATTGAAGAGAATGAAAA+GGG | 0.443195 | 8.4:+7406840 | MS.gene57665:CDS |
| TAGAATTGAAGAGAATGAAA+AGG | 0.451533 | 8.4:+7406839 | MS.gene57665:CDS |
| TTCATGAAATTTCTCTCAGA+TGG | 0.451801 | 8.4:+7406603 | MS.gene57665:CDS |
| TTTGAAGCATTCTCTTGTGT+TGG | 0.454108 | 8.4:+7404170 | MS.gene57665:CDS |
| AATATTACCTGGAAGAATGA+AGG | 0.464963 | 8.4:-7404872 | None:intergenic |
| ATGCACCTTATTACTGCTAA+AGG | 0.466662 | 8.4:-7405572 | None:intergenic |
| GGGTCATTTGAAGATGTTTG+TGG | 0.467210 | 8.4:+7407122 | MS.gene57665:CDS |
| AAGACTAAGTTCCTTCAAAA+GGG | 0.480191 | 8.4:+7404254 | MS.gene57665:CDS |
| AAAATGAAATTTCATTTACA+TGG | 0.483113 | 8.4:+7406367 | MS.gene57665:CDS |
| TGAAACTTTAAGTAACAAAG+AGG | 0.484462 | 8.4:+7406644 | MS.gene57665:CDS |
| ACTGAGTTGACGAGTACATC+AGG | 0.485948 | 8.4:+7404834 | MS.gene57665:CDS |
| TTTACCTTCTATGCTTGCAA+TGG | 0.488616 | 8.4:-7406166 | None:intergenic |
| GTAATATTCATCTTAACAAA+AGG | 0.492526 | 8.4:+7406681 | MS.gene57665:CDS |
| ACGGAATCGAGGTGTAAGAT+TGG | 0.504184 | 8.4:-7406070 | None:intergenic |
| AGATGCTCATCTTGGAATCA+AGG | 0.504959 | 8.4:-7405516 | None:intergenic |
| GTTCTGAGAGATGCTCATCT+TGG | 0.505466 | 8.4:-7405524 | None:intergenic |
| CAATGGTGCTGCATGATTGT+TGG | 0.507077 | 8.4:-7406095 | None:intergenic |
| GAACATGAAAGCTGATGAAG+AGG | 0.511062 | 8.4:+7406941 | MS.gene57665:CDS |
| TGTTGTGAAGTTTGATGGTG+TGG | 0.518229 | 8.4:-7404297 | None:intergenic |
| ACAAACAGCACCAAAATCAC+TGG | 0.519494 | 8.4:+7405983 | MS.gene57665:CDS |
| TCAGAACCTATCTCATATGC+TGG | 0.523908 | 8.4:+7405540 | MS.gene57665:CDS |
| CCATGAGACTGAAGCCAGAA+AGG | 0.527419 | 8.4:-7405685 | None:intergenic |
| AGCTTTCATGTTCAGATCAA+GGG | 0.528546 | 8.4:-7406931 | None:intergenic |
| GAGAAAACATCAACAGCTTG+TGG | 0.530991 | 8.4:+7406545 | MS.gene57665:CDS |
| ACACAAGTTCAGATAAAGAC+AGG | 0.536618 | 8.4:+7407066 | MS.gene57665:CDS |
| GAAACTTTAAGTAACAAAGA+GGG | 0.538982 | 8.4:+7406645 | MS.gene57665:CDS |
| CACCAAAATCACTGGAATAG+GGG | 0.539949 | 8.4:+7405991 | MS.gene57665:CDS |
| ACGAGTACATCAGGTGGACT+TGG | 0.541210 | 8.4:+7404843 | MS.gene57665:CDS |
| TGATGATTCAAGTGAAAAGG+TGG | 0.542844 | 8.4:+7406218 | MS.gene57665:CDS |
| ATATATCAAGTGATGCGCTC+AGG | 0.544488 | 8.4:+7404102 | None:intergenic |
| TGTTGATTTGGTATCAAACA+AGG | 0.544854 | 8.4:-7406340 | None:intergenic |
| TGAAGCAGCCTCTGCTGTGA+GGG | 0.545563 | 8.4:-7404145 | None:intergenic |
| TGATGCTTGATGAATTATTG+AGG | 0.548945 | 8.4:-7406035 | None:intergenic |
| GCTCAATTTCTCAGACCTGC+AGG | 0.549147 | 8.4:+7405646 | MS.gene57665:CDS |
| AAATGTTATAATAGTTCTGG+TGG | 0.549816 | 8.4:+7404654 | MS.gene57665:intron |
| CAATGATGATTCAAGTGAAA+AGG | 0.551243 | 8.4:+7406215 | MS.gene57665:CDS |
| AAACTGTTATCAATTTGTTG+TGG | 0.554067 | 8.4:+7406736 | MS.gene57665:CDS |
| CTTGCAATGGAATCAAAGAC+TGG | 0.557776 | 8.4:-7406153 | None:intergenic |
| ATATTACCTGGAAGAATGAA+GGG | 0.561317 | 8.4:-7404871 | None:intergenic |
| TGTTCTGTCTGAAACTGCTA+AGG | 0.561994 | 8.4:-7404737 | None:intergenic |
| TCACTAGTTGAAGGTGAACA+TGG | 0.565455 | 8.4:-7404693 | None:intergenic |
| GAATCGAGGTGTAAGATTGG+AGG | 0.571539 | 8.4:-7406067 | None:intergenic |
| AAACTTTAAGTAACAAAGAG+GGG | 0.574195 | 8.4:+7406646 | MS.gene57665:CDS |
| ATATTCATCTTAACAAAAGG+TGG | 0.591782 | 8.4:+7406684 | MS.gene57665:CDS |
| GTAAAGATTAGTCTTGCACT+TGG | 0.591838 | 8.4:+7406192 | MS.gene57665:CDS |
| AAAGTGATGGCTACATGTAG+AGG | 0.593224 | 8.4:-7404222 | None:intergenic |
| TCAAGAGCTCTAGATTGAAG+TGG | 0.600534 | 8.4:-7404321 | None:intergenic |
| TCTTAAGGTAAGTAAAGTGA+TGG | 0.602666 | 8.4:-7404235 | None:intergenic |
| CTTGTGTTGGCTAGAAGGAG+AGG | 0.606431 | 8.4:+7404183 | MS.gene57665:CDS |
| CTGAAGCAGCCTCTGCTGTG+AGG | 0.607118 | 8.4:-7404146 | None:intergenic |
| GGAATAGTTTCAGATTGCCA+TGG | 0.614508 | 8.4:-7406303 | None:intergenic |
| GATTGTTGGCGACGGAATCG+AGG | 0.618402 | 8.4:-7406081 | None:intergenic |
| TGCTGCATGATTGTTGGCGA+CGG | 0.618752 | 8.4:-7406089 | None:intergenic |
| TAGCAGTAATAAGGTGCATG+AGG | 0.621940 | 8.4:+7405576 | MS.gene57665:CDS |
| TAATAGCATTTCAGAAAATG+GGG | 0.629233 | 8.4:-7406514 | None:intergenic |
| GATGATTCAAGTGAAAAGGT+GGG | 0.632079 | 8.4:+7406219 | MS.gene57665:CDS |
| TATCAAGTGATGCGCTCAGG+AGG | 0.632949 | 8.4:+7404105 | None:intergenic |
| TGTTATAATAGTTCTGGTGG+TGG | 0.635592 | 8.4:+7404657 | MS.gene57665:intron |
| AAAGCTGATGAAGAGGAAGA+TGG | 0.637095 | 8.4:+7406948 | MS.gene57665:CDS |
| GCAGCAGACCCTCACAGCAG+AGG | 0.647393 | 8.4:+7404137 | MS.gene57665:CDS |
| TAGAAGGAGAGGTCATCCAC+AGG | 0.649362 | 8.4:+7404194 | MS.gene57665:CDS |
| ACATGTAGAGGAGTGACCTG+TGG | 0.684775 | 8.4:-7404210 | None:intergenic |
| TATTGCAAGAGAATGTGCCA+TGG | 0.693666 | 8.4:+7406286 | MS.gene57665:CDS |
| GAGTTGACGAGTACATCAGG+TGG | 0.710146 | 8.4:+7404837 | MS.gene57665:CDS |
| GAATTGAAGAGAATGAAAAG+GGG | 0.732384 | 8.4:+7406841 | MS.gene57665:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAATTTCATTTACA+TGG | + | chr8.4:7406367-7406386 | MS.gene57665:CDS | 15.0% |
| !! | TTTAAATGTTATAATAGTTC+TGG | + | chr8.4:7404651-7404670 | MS.gene57665:intron | 15.0% |
| !!! | AGTTTAATTTCAATGATAAA+AGG | + | chr8.4:7406118-7406137 | MS.gene57665:CDS | 15.0% |
| !!! | GTTTAATTTCAATGATAAAA+GGG | + | chr8.4:7406119-7406138 | MS.gene57665:CDS | 15.0% |
| !!! | TTCTTAATTTGTTTGATTTA+AGG | + | chr8.4:7405016-7405035 | MS.gene57665:intron | 15.0% |
| !!! | TTTTTCTGTTTAAGATTAAA+GGG | + | chr8.4:7407102-7407121 | MS.gene57665:CDS | 15.0% |
| !!! | TTTTTTCTGTTTAAGATTAA+AGG | + | chr8.4:7407101-7407120 | MS.gene57665:CDS | 15.0% |
| !! | AAGCAAAATAAAATATTACC+TGG | - | chr8.4:7404886-7404905 | None:intergenic | 20.0% |
| !! | ATCATTGAAATTAAACTCAA+TGG | - | chr8.4:7406115-7406134 | None:intergenic | 20.0% |
| !! | CATTTAAAAACAGAATTAGA+AGG | - | chr8.4:7404639-7404658 | None:intergenic | 20.0% |
| !! | CCATAATTAAGCAAATAAAT+AGG | - | chr8.4:7405463-7405482 | None:intergenic | 20.0% |
| !! | CCTATTTATTTGCTTAATTA+TGG | + | chr8.4:7405460-7405479 | MS.gene57665:intron | 20.0% |
| !! | GTAATATTCATCTTAACAAA+AGG | + | chr8.4:7406681-7406700 | MS.gene57665:CDS | 20.0% |
| !!! | ATGAATAATTCAACATTTTC+AGG | + | chr8.4:7405903-7405922 | MS.gene57665:intron | 20.0% |
| !!! | TGTTTGATTTAAGGTATAAA+AGG | + | chr8.4:7405025-7405044 | MS.gene57665:intron | 20.0% |
| !!! | TTATGTTTACCTTTCTTTTT+TGG | - | chr8.4:7405076-7405095 | None:intergenic | 20.0% |
| !!! | TTCATTTTGTTTTGTTGATT+TGG | - | chr8.4:7406355-7406374 | None:intergenic | 20.0% |
| !!! | TTTACATGGTTATTTTTACA+AGG | + | chr8.4:7406381-7406400 | MS.gene57665:CDS | 20.0% |
| ! | AAACTTTAAGTAACAAAGAG+GGG | + | chr8.4:7406646-7406665 | MS.gene57665:CDS | 25.0% |
| ! | AAAGACTACACTTTATCTAA+AGG | + | chr8.4:7405345-7405364 | MS.gene57665:intron | 25.0% |
| ! | ACACATGTTATGTTACTAAA+AGG | - | chr8.4:7404997-7405016 | None:intergenic | 25.0% |
| ! | AGAAACACATTTGAATTCAA+TGG | - | chr8.4:7407017-7407036 | None:intergenic | 25.0% |
| ! | AGAATTGAAGAGAATGAAAA+GGG | + | chr8.4:7406840-7406859 | MS.gene57665:CDS | 25.0% |
| ! | ATATTCATCTTAACAAAAGG+TGG | + | chr8.4:7406684-7406703 | MS.gene57665:CDS | 25.0% |
| ! | CTAATAGCATTTCAGAAAAT+GGG | - | chr8.4:7406518-7406537 | None:intergenic | 25.0% |
| ! | GAAACTTTAAGTAACAAAGA+GGG | + | chr8.4:7406645-7406664 | MS.gene57665:CDS | 25.0% |
| ! | TAAATGCAACCAAAAAAGAA+AGG | + | chr8.4:7405064-7405083 | MS.gene57665:intron | 25.0% |
| ! | TAATAGCATTTCAGAAAATG+GGG | - | chr8.4:7406517-7406536 | None:intergenic | 25.0% |
| ! | TAGAATTGAAGAGAATGAAA+AGG | + | chr8.4:7406839-7406858 | MS.gene57665:CDS | 25.0% |
| ! | TATAACACTTAGTACATGTT+TGG | + | chr8.4:7404916-7404935 | MS.gene57665:intron | 25.0% |
| ! | TCAATTGGATATGCTAAAAA+AGG | + | chr8.4:7406479-7406498 | MS.gene57665:CDS | 25.0% |
| ! | TGAAACTTTAAGTAACAAAG+AGG | + | chr8.4:7406644-7406663 | MS.gene57665:CDS | 25.0% |
| ! | TGAGAGAAATTTCATGAATT+GGG | - | chr8.4:7406601-7406620 | None:intergenic | 25.0% |
| ! | TTTCATTCTCTTCAATTCTA+GGG | - | chr8.4:7406839-7406858 | None:intergenic | 25.0% |
| !! | ATTCCATTTTCTTTTCAACT+CGG | - | chr8.4:7405938-7405957 | None:intergenic | 25.0% |
| !! | TTTTCATTCTCTTCAATTCT+AGG | - | chr8.4:7406840-7406859 | None:intergenic | 25.0% |
| !!! | AAACTGTTATCAATTTGTTG+TGG | + | chr8.4:7406736-7406755 | MS.gene57665:CDS | 25.0% |
| !!! | AAATGTTATAATAGTTCTGG+TGG | + | chr8.4:7404654-7404673 | MS.gene57665:intron | 25.0% |
| !!! | TCAGTCAAATTATTTTGAGT+TGG | + | chr8.4:7405314-7405333 | MS.gene57665:intron | 25.0% |
| !!! | TTGAGCTTCTTTTTCATAAT+TGG | - | chr8.4:7405632-7405651 | None:intergenic | 25.0% |
| !!! | TTTTTAGCATATCCAATTGA+AGG | - | chr8.4:7406479-7406498 | None:intergenic | 25.0% |
| AAGACTAAGTTCCTTCAAAA+GGG | + | chr8.4:7404254-7404273 | MS.gene57665:CDS | 30.0% | |
| AATATTACCTGGAAGAATGA+AGG | - | chr8.4:7404875-7404894 | None:intergenic | 30.0% | |
| ATAATGCAATCATCGTGTAT+TGG | - | chr8.4:7405787-7405806 | None:intergenic | 30.0% | |
| ATATTACCTGGAAGAATGAA+GGG | - | chr8.4:7404874-7404893 | None:intergenic | 30.0% | |
| CAATGATGATTCAAGTGAAA+AGG | + | chr8.4:7406215-7406234 | MS.gene57665:CDS | 30.0% | |
| CACATCTATGATAGTACTAT+TGG | + | chr8.4:7405877-7405896 | MS.gene57665:intron | 30.0% | |
| CCTAATAGCATTTCAGAAAA+TGG | - | chr8.4:7406519-7406538 | None:intergenic | 30.0% | |
| CTGAGAGAAATTTCATGAAT+TGG | - | chr8.4:7406602-7406621 | None:intergenic | 30.0% | |
| GAATTGAAGAGAATGAAAAG+GGG | + | chr8.4:7406841-7406860 | MS.gene57665:CDS | 30.0% | |
| GTTTCAATGTAGCTCTTAAT+AGG | + | chr8.4:7404349-7404368 | MS.gene57665:CDS | 30.0% | |
| TAAGACTAAGTTCCTTCAAA+AGG | + | chr8.4:7404253-7404272 | MS.gene57665:CDS | 30.0% | |
| TCTTAAGGTAAGTAAAGTGA+TGG | - | chr8.4:7404238-7404257 | None:intergenic | 30.0% | |
| TGATGCTTGATGAATTATTG+AGG | - | chr8.4:7406038-7406057 | None:intergenic | 30.0% | |
| TTCATGAAATTTCTCTCAGA+TGG | + | chr8.4:7406603-7406622 | MS.gene57665:CDS | 30.0% | |
| TTTCAGACAGAACAATTTCA+TGG | + | chr8.4:7404746-7404765 | MS.gene57665:CDS | 30.0% | |
| ! | AACAAGGCTTTTGATATTGA+AGG | - | chr8.4:7406327-7406346 | None:intergenic | 30.0% |
| ! | ATCAAATTCAGCTTTTCTCT+TGG | - | chr8.4:7406796-7406815 | None:intergenic | 30.0% |
| ! | TAACCGAGTTGAAAAGAAAA+TGG | + | chr8.4:7405932-7405951 | MS.gene57665:CDS | 30.0% |
| ! | TCAAATTCAGCTTTTCTCTT+GGG | - | chr8.4:7406795-7406814 | None:intergenic | 30.0% |
| ! | TTCTGAAAAAGGAAGCAAAA+AGG | + | chr8.4:7406872-7406891 | MS.gene57665:CDS | 30.0% |
| !! | ACACATGTTAAAAGCATTGT+TGG | + | chr8.4:7405203-7405222 | MS.gene57665:intron | 30.0% |
| !! | ATGTTAAAAGCATTGTTGGT+TGG | + | chr8.4:7405207-7405226 | MS.gene57665:intron | 30.0% |
| !! | TGTTGATTTGGTATCAAACA+AGG | - | chr8.4:7406343-7406362 | None:intergenic | 30.0% |
| !! | TTTGAAGGAACTTAGTCTTA+AGG | - | chr8.4:7404253-7404272 | None:intergenic | 30.0% |
| !!! | CCATTTTCTGAAATGCTATT+AGG | + | chr8.4:7406516-7406535 | MS.gene57665:CDS | 30.0% |
| AAAGCCCTTTAGCAGTAATA+AGG | + | chr8.4:7405567-7405586 | MS.gene57665:CDS | 35.0% | |
| ACACAAGTTCAGATAAAGAC+AGG | + | chr8.4:7407066-7407085 | MS.gene57665:CDS | 35.0% | |
| AGAAGAAAACATTGCCTTTC+TGG | + | chr8.4:7405671-7405690 | MS.gene57665:CDS | 35.0% | |
| AGCTTTCATGTTCAGATCAA+GGG | - | chr8.4:7406934-7406953 | None:intergenic | 35.0% | |
| AGTAACAAAGAGGGGAATTT+AGG | + | chr8.4:7406654-7406673 | MS.gene57665:CDS | 35.0% | |
| ATGCACCTTATTACTGCTAA+AGG | - | chr8.4:7405575-7405594 | None:intergenic | 35.0% | |
| CTAAAAGGTTAGTGCATGTT+TGG | - | chr8.4:7404982-7405001 | None:intergenic | 35.0% | |
| CTCTCAGATGGATATGAAAA+AGG | + | chr8.4:7406615-7406634 | MS.gene57665:CDS | 35.0% | |
| GATGATTCAAGTGAAAAGGT+GGG | + | chr8.4:7406219-7406238 | MS.gene57665:CDS | 35.0% | |
| TGATGATCCTAGTGTTAGTA+GGG | + | chr8.4:7404551-7404570 | MS.gene57665:intron | 35.0% | |
| TGATGATTCAAGTGAAAAGG+TGG | + | chr8.4:7406218-7406237 | MS.gene57665:CDS | 35.0% | |
| TGCACCTTATTACTGCTAAA+GGG | - | chr8.4:7405574-7405593 | None:intergenic | 35.0% | |
| TGGCACAGAAGAACAAAATA+AGG | + | chr8.4:7405705-7405724 | MS.gene57665:CDS | 35.0% | |
| TTGACTGATTAACGTGTAAG+AGG | - | chr8.4:7405302-7405321 | None:intergenic | 35.0% | |
| TTGTTTCCAGCATATGAGAT+AGG | - | chr8.4:7405549-7405568 | None:intergenic | 35.0% | |
| TTTACCTTCTATGCTTGCAA+TGG | - | chr8.4:7406169-7406188 | None:intergenic | 35.0% | |
| ! | AATGTGTTGAGGAGTATGTA+CGG | + | chr8.4:7405162-7405181 | MS.gene57665:intron | 35.0% |
| ! | CAAATTCAGCTTTTCTCTTG+GGG | - | chr8.4:7406794-7406813 | None:intergenic | 35.0% |
| ! | GCTATTGCAGAATCAGTTTT+TGG | + | chr8.4:7406438-7406457 | MS.gene57665:CDS | 35.0% |
| ! | TTGATGATCCTAGTGTTAGT+AGG | + | chr8.4:7404550-7404569 | MS.gene57665:intron | 35.0% |
| ! | TTTGAAGCATTCTCTTGTGT+TGG | + | chr8.4:7404170-7404189 | MS.gene57665:CDS | 35.0% |
| !! | AAAGTGTTGTCTAGTTCTGA+TGG | + | chr8.4:7405109-7405128 | MS.gene57665:intron | 35.0% |
| !! | ATTTGTTGTGCAATGTGTTG+AGG | + | chr8.4:7405151-7405170 | MS.gene57665:intron | 35.0% |
| !! | GGGTTGTTGATTTCTGAAAA+AGG | + | chr8.4:7406861-7406880 | MS.gene57665:CDS | 35.0% |
| !! | GTAAAGATTAGTCTTGCACT+TGG | + | chr8.4:7406192-7406211 | MS.gene57665:CDS | 35.0% |
| !! | TGTTATAATAGTTCTGGTGG+TGG | + | chr8.4:7404657-7404676 | MS.gene57665:intron | 35.0% |
| !!! | AATTCTAGGGTTCTTGGTTT+TGG | - | chr8.4:7406826-7406845 | None:intergenic | 35.0% |
| !!! | AGTTTTTGGTTCAGCTGATT+TGG | + | chr8.4:7406452-7406471 | MS.gene57665:CDS | 35.0% |
| !!! | GATTTTGGTGCTGTTTGTTT+TGG | - | chr8.4:7405981-7406000 | None:intergenic | 35.0% |
| AAAGCTGATGAAGAGGAAGA+TGG | + | chr8.4:7406948-7406967 | MS.gene57665:CDS | 40.0% | |
| AAAGTGATGGCTACATGTAG+AGG | - | chr8.4:7404225-7404244 | None:intergenic | 40.0% | |
| ACAAACAGCACCAAAATCAC+TGG | + | chr8.4:7405983-7406002 | MS.gene57665:CDS | 40.0% | |
| AGATGCTCATCTTGGAATCA+AGG | - | chr8.4:7405519-7405538 | None:intergenic | 40.0% | |
| AGCACCAAAATCACTGGAAT+AGG | + | chr8.4:7405989-7406008 | MS.gene57665:CDS | 40.0% | |
| CACCAAAATCACTGGAATAG+GGG | + | chr8.4:7405991-7406010 | MS.gene57665:CDS | 40.0% | |
| CAGCTTTCATGTTCAGATCA+AGG | - | chr8.4:7406935-7406954 | None:intergenic | 40.0% | |
| CTCATAACCCTACTAACACT+AGG | - | chr8.4:7404561-7404580 | None:intergenic | 40.0% | |
| CTGTGATTCTCACTAGTTGA+AGG | - | chr8.4:7404705-7404724 | None:intergenic | 40.0% | |
| CTTGCAATGGAATCAAAGAC+TGG | - | chr8.4:7406156-7406175 | None:intergenic | 40.0% | |
| GAACATGAAAGCTGATGAAG+AGG | + | chr8.4:7406941-7406960 | MS.gene57665:CDS | 40.0% | |
| GAGAAAACATCAACAGCTTG+TGG | + | chr8.4:7406545-7406564 | MS.gene57665:CDS | 40.0% | |
| GATTCCATTGCAAGCATAGA+AGG | + | chr8.4:7406162-7406181 | MS.gene57665:CDS | 40.0% | |
| GCACCAAAATCACTGGAATA+GGG | + | chr8.4:7405990-7406009 | MS.gene57665:CDS | 40.0% | |
| GGAATAGTTTCAGATTGCCA+TGG | - | chr8.4:7406306-7406325 | None:intergenic | 40.0% | |
| GTGGATGTTGTGAAGTTTGA+TGG | - | chr8.4:7404305-7404324 | None:intergenic | 40.0% | |
| GTTCTTCTCTTCAATGCTTG+TGG | - | chr8.4:7406712-7406731 | None:intergenic | 40.0% | |
| TAGCAGTAATAAGGTGCATG+AGG | + | chr8.4:7405576-7405595 | MS.gene57665:CDS | 40.0% | |
| TATGTACGGTTACTGAGCTA+TGG | + | chr8.4:7405176-7405195 | MS.gene57665:intron | 40.0% | |
| TATTGCAAGAGAATGTGCCA+TGG | + | chr8.4:7406286-7406305 | MS.gene57665:CDS | 40.0% | |
| TCACTAGTTGAAGGTGAACA+TGG | - | chr8.4:7404696-7404715 | None:intergenic | 40.0% | |
| TCAGAACCTATCTCATATGC+TGG | + | chr8.4:7405540-7405559 | MS.gene57665:CDS | 40.0% | |
| TGAGAGTGAATCAAAGGAGA+AGG | - | chr8.4:7404387-7404406 | None:intergenic | 40.0% | |
| ! | AATGTTTTCTTCTGTCCTGC+AGG | - | chr8.4:7405664-7405683 | None:intergenic | 40.0% |
| ! | CTCGTCAACTCAGTTCTTTT+TGG | - | chr8.4:7404828-7404847 | None:intergenic | 40.0% |
| ! | CTTAAGACAAGCCCTTTTGA+AGG | - | chr8.4:7404268-7404287 | None:intergenic | 40.0% |
| ! | GTCAACTCAGTTCTTTTTGG+TGG | - | chr8.4:7404825-7404844 | None:intergenic | 40.0% |
| ! | TGTTCTGTCTGAAACTGCTA+AGG | - | chr8.4:7404740-7404759 | None:intergenic | 40.0% |
| !! | AGCATTGTTGGTTGGTAGTA+AGG | + | chr8.4:7405215-7405234 | MS.gene57665:intron | 40.0% |
| !! | AGCTGATTTGGTCCTTCAAT+TGG | + | chr8.4:7406464-7406483 | MS.gene57665:CDS | 40.0% |
| !! | ATCAAAGGAGAAGGTGTTGT+TGG | - | chr8.4:7404378-7404397 | None:intergenic | 40.0% |
| !! | ATGAGAGCATTGGAAAGTGA+AGG | - | chr8.4:7404411-7404430 | None:intergenic | 40.0% |
| !! | ATTCTCTTGTGTTGGCTAGA+AGG | + | chr8.4:7404178-7404197 | MS.gene57665:CDS | 40.0% |
| !! | CTCTTCAATTCTAGGGTTCT+TGG | - | chr8.4:7406832-7406851 | None:intergenic | 40.0% |
| !! | TCAAGAGCTCTAGATTGAAG+TGG | - | chr8.4:7404324-7404343 | None:intergenic | 40.0% |
| !! | TGTTGTGAAGTTTGATGGTG+TGG | - | chr8.4:7404300-7404319 | None:intergenic | 40.0% |
| !!! | GTTTGTTTTGGTGTAGACAG+TGG | - | chr8.4:7405969-7405988 | None:intergenic | 40.0% |
| ACGGAATCGAGGTGTAAGAT+TGG | - | chr8.4:7406073-7406092 | None:intergenic | 45.0% | |
| AGTAGGGTTATGAGAGAAGC+TGG | + | chr8.4:7404567-7404586 | MS.gene57665:intron | 45.0% | |
| CTCTTGGGGCTCAAGAAATT+AGG | - | chr8.4:7406780-7406799 | None:intergenic | 45.0% | |
| GAAGGCTGAGAGTGAATCAA+AGG | - | chr8.4:7404393-7404412 | None:intergenic | 45.0% | |
| GAATCGAGGTGTAAGATTGG+AGG | - | chr8.4:7406070-7406089 | None:intergenic | 45.0% | |
| GCACAAGCTCATCAAAGAAG+AGG | + | chr8.4:7404447-7404466 | MS.gene57665:intron | 45.0% | |
| ! | ACTGAGTTGACGAGTACATC+AGG | + | chr8.4:7404834-7404853 | MS.gene57665:CDS | 45.0% |
| ! | CAATGCAGCAATGAGAGCAT+TGG | - | chr8.4:7404421-7404440 | None:intergenic | 45.0% |
| ! | TGCCCCTATTCCAGTGATTT+TGG | - | chr8.4:7405996-7406015 | None:intergenic | 45.0% |
| !! | CAATGGTGCTGCATGATTGT+TGG | - | chr8.4:7406098-7406117 | None:intergenic | 45.0% |
| !! | GTTCTGAGAGATGCTCATCT+TGG | - | chr8.4:7405527-7405546 | None:intergenic | 45.0% |
| ACATGTAGAGGAGTGACCTG+TGG | - | chr8.4:7404213-7404232 | None:intergenic | 50.0% | |
| CCATGAGACTGAAGCCAGAA+AGG | - | chr8.4:7405688-7405707 | None:intergenic | 50.0% | |
| GAGTTGACGAGTACATCAGG+TGG | + | chr8.4:7404837-7404856 | MS.gene57665:CDS | 50.0% | |
| GCTCAATTTCTCAGACCTGC+AGG | + | chr8.4:7405646-7405665 | MS.gene57665:CDS | 50.0% | |
| GCTTGACCCTTCATTCTTCC+AGG | + | chr8.4:7404865-7404884 | MS.gene57665:CDS | 50.0% | |
| TAGAAGGAGAGGTCATCCAC+AGG | + | chr8.4:7404194-7404213 | MS.gene57665:CDS | 50.0% | |
| TGCTGCATGATTGTTGGCGA+CGG | - | chr8.4:7406092-7406111 | None:intergenic | 50.0% | |
| TTGCTGCTGCTGCTGTTCTA+TGG | - | chr8.4:7404475-7404494 | None:intergenic | 50.0% | |
| ! | ACGAGTACATCAGGTGGACT+TGG | + | chr8.4:7404843-7404862 | MS.gene57665:CDS | 50.0% |
| !! | CCTTTCTGGCTTCAGTCTCA+TGG | + | chr8.4:7405685-7405704 | MS.gene57665:CDS | 50.0% |
| !! | CTTGTGTTGGCTAGAAGGAG+AGG | + | chr8.4:7404183-7404202 | MS.gene57665:CDS | 50.0% |
| GATTGTTGGCGACGGAATCG+AGG | - | chr8.4:7406084-7406103 | None:intergenic | 55.0% | |
| GCAGCAGCAGCAACAGCAAA+CGG | + | chr8.4:7404482-7404501 | MS.gene57665:intron | 55.0% | |
| TGAAGCAGCCTCTGCTGTGA+GGG | - | chr8.4:7404148-7404167 | None:intergenic | 55.0% | |
| CTGAAGCAGCCTCTGCTGTG+AGG | - | chr8.4:7404149-7404168 | None:intergenic | 60.0% | |
| GCAGCAGACCCTCACAGCAG+AGG | + | chr8.4:7404137-7404156 | MS.gene57665:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 7404114 | 7407143 | 7404114 | ID=MS.gene57665 |
| chr8.4 | mRNA | 7404114 | 7407143 | 7404114 | ID=MS.gene57665.t1;Parent=MS.gene57665 |
| chr8.4 | exon | 7404114 | 7404370 | 7404114 | ID=MS.gene57665.t1.exon1;Parent=MS.gene57665.t1 |
| chr8.4 | CDS | 7404114 | 7404370 | 7404114 | ID=cds.MS.gene57665.t1;Parent=MS.gene57665.t1 |
| chr8.4 | exon | 7404668 | 7404886 | 7404668 | ID=MS.gene57665.t1.exon2;Parent=MS.gene57665.t1 |
| chr8.4 | CDS | 7404668 | 7404886 | 7404668 | ID=cds.MS.gene57665.t1;Parent=MS.gene57665.t1 |
| chr8.4 | exon | 7405513 | 7405726 | 7405513 | ID=MS.gene57665.t1.exon3;Parent=MS.gene57665.t1 |
| chr8.4 | CDS | 7405513 | 7405726 | 7405513 | ID=cds.MS.gene57665.t1;Parent=MS.gene57665.t1 |
| chr8.4 | exon | 7405925 | 7407143 | 7405925 | ID=MS.gene57665.t1.exon4;Parent=MS.gene57665.t1 |
| chr8.4 | CDS | 7405925 | 7407143 | 7405925 | ID=cds.MS.gene57665.t1;Parent=MS.gene57665.t1 |
| Gene Sequence |
| Protein sequence |
