Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59230.t1 | XP_024642001.1 | 68.8 | 337 | 35 | 3 | 1 | 267 | 53 | 389 | 2.80E-115 | 424.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59230.t1 | P35684 | 59.9 | 337 | 65 | 3 | 1 | 267 | 53 | 389 | 5.6e-104 | 378.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59230.t1 | G7IBY1 | 68.8 | 337 | 35 | 3 | 1 | 267 | 53 | 389 | 2.0e-115 | 424.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene59230 | 0.898493 | 5.03E-77 | -1.69E-46 |
| MS.gene050134 | MS.gene59230 | 0.881111 | 3.15E-70 | -1.69E-46 |
| MS.gene050791 | MS.gene59230 | 0.874513 | 6.37E-68 | -1.69E-46 |
| MS.gene051984 | MS.gene59230 | 0.852318 | 4.99E-61 | -1.69E-46 |
| MS.gene052209 | MS.gene59230 | 0.80928 | 2.05E-50 | -1.69E-46 |
| MS.gene052664 | MS.gene59230 | 0.876716 | 1.12E-68 | -1.69E-46 |
| MS.gene052666 | MS.gene59230 | 0.837664 | 4.55E-57 | -1.69E-46 |
| MS.gene053224 | MS.gene59230 | 0.876573 | 1.25E-68 | -1.69E-46 |
| MS.gene055232 | MS.gene59230 | 0.837961 | 3.82E-57 | -1.69E-46 |
| MS.gene057272 | MS.gene59230 | 0.842981 | 1.85E-58 | -1.69E-46 |
| MS.gene057641 | MS.gene59230 | 0.853372 | 2.50E-61 | -1.69E-46 |
| MS.gene057643 | MS.gene59230 | 0.873346 | 1.58E-67 | -1.69E-46 |
| MS.gene060432 | MS.gene59230 | 0.840575 | 8.00E-58 | -1.69E-46 |
| MS.gene060483 | MS.gene59230 | 0.847371 | 1.21E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59230.t1 | MTR_1g098540 | 68.843 | 337 | 35 | 3 | 1 | 267 | 53 | 389 | 3.51e-144 | 410 |
| MS.gene59230.t1 | MTR_4g094398 | 62.908 | 337 | 55 | 3 | 1 | 267 | 53 | 389 | 2.14e-130 | 375 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59230.t1 | AT1G43170 | 60.597 | 335 | 62 | 4 | 1 | 265 | 53 | 387 | 1.79e-124 | 360 |
| MS.gene59230.t1 | AT1G43170 | 60.597 | 335 | 62 | 4 | 1 | 265 | 53 | 387 | 1.79e-124 | 360 |
| MS.gene59230.t1 | AT1G43170 | 60.597 | 335 | 62 | 4 | 1 | 265 | 53 | 387 | 1.79e-124 | 360 |
| MS.gene59230.t1 | AT1G43170 | 60.597 | 335 | 62 | 4 | 1 | 265 | 53 | 387 | 1.79e-124 | 360 |
| MS.gene59230.t1 | AT1G43170 | 60.597 | 335 | 62 | 4 | 1 | 265 | 53 | 387 | 1.79e-124 | 360 |
| MS.gene59230.t1 | AT1G43170 | 60.597 | 335 | 62 | 4 | 1 | 265 | 53 | 387 | 1.79e-124 | 360 |
| MS.gene59230.t1 | AT1G43170 | 60.597 | 335 | 62 | 4 | 1 | 265 | 53 | 387 | 1.79e-124 | 360 |
| MS.gene59230.t1 | AT1G43170 | 60.597 | 335 | 62 | 4 | 1 | 265 | 53 | 387 | 1.79e-124 | 360 |
| MS.gene59230.t1 | AT1G61580 | 58.982 | 334 | 67 | 3 | 1 | 264 | 53 | 386 | 1.32e-120 | 350 |
| MS.gene59230.t1 | AT1G43170 | 68.493 | 219 | 43 | 1 | 73 | 265 | 86 | 304 | 8.19e-105 | 306 |
Find 82 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTTGAATCTCCATGATA+TGG | 0.254331 | 1.4:-2226295 | None:intergenic |
| ATCGATACCTCTTCCAAGTT+TGG | 0.285033 | 1.4:+2227016 | MS.gene59230:CDS |
| TATCTCAGAGCTTCACAAAA+AGG | 0.335186 | 1.4:+2225241 | MS.gene59230:intron |
| TTGAGGAAGGTTGCATGTAT+TGG | 0.358668 | 1.4:+2226500 | MS.gene59230:CDS |
| CTCACCTATCGAACTCAGTC+TGG | 0.367617 | 1.4:-2226649 | None:intergenic |
| CAGAGTAATAACCCTCTTCT+TGG | 0.375680 | 1.4:-2226933 | None:intergenic |
| TTTGCTTCTCTGATGTTGTC+TGG | 0.376238 | 1.4:-2227051 | None:intergenic |
| TACTTCTTCATTTCTCAAGC+TGG | 0.395996 | 1.4:-2225493 | None:intergenic |
| TCTTTCACTGTTGCCAGAGC+TGG | 0.398591 | 1.4:+2226545 | MS.gene59230:CDS |
| CACTTGAATCTCCATGATAT+GGG | 0.428524 | 1.4:-2226294 | None:intergenic |
| ATTTACAAGCTCGGCAAAGT+TGG | 0.433680 | 1.4:+2226608 | MS.gene59230:CDS |
| ATGAAGGTGTTGTTACTCGT+TGG | 0.437276 | 1.4:+2226442 | MS.gene59230:intron |
| ATGGTTGTTGTCGGTGTTGT+GGG | 0.442307 | 1.4:+2225302 | MS.gene59230:CDS |
| GAAACGACCATGTCCAAACT+TGG | 0.447320 | 1.4:-2227029 | None:intergenic |
| CGAACTCAGTCTGGGCGTCA+TGG | 0.449202 | 1.4:-2226640 | None:intergenic |
| TGAAGGTGTTGTTACTCGTT+GGG | 0.451002 | 1.4:+2226443 | MS.gene59230:intron |
| TATCTCAGATCAGGAAATGA+AGG | 0.461269 | 1.4:+2226253 | MS.gene59230:intron |
| ACCCCTCCCATGGTTGTTGT+CGG | 0.462754 | 1.4:+2225293 | MS.gene59230:CDS |
| GTCTTCCTCGTAAGACTCAC+AGG | 0.464950 | 1.4:+2226474 | MS.gene59230:CDS |
| TGAGAAAGACATTACACCTA+TGG | 0.467448 | 1.4:+2226844 | MS.gene59230:CDS |
| GTAAGACTCACAGGGGTTTG+AGG | 0.468820 | 1.4:+2226483 | MS.gene59230:CDS |
| ACTACCATAATTAAGCTTTG+AGG | 0.473296 | 1.4:-2227087 | None:intergenic |
| CATGGTTGTTGTCGGTGTTG+TGG | 0.479589 | 1.4:+2225301 | MS.gene59230:CDS |
| GACTTCTCGTCTTGCTCTTG+AGG | 0.480840 | 1.4:+2226976 | MS.gene59230:CDS |
| TGTTCAGCTCAGTTCTGTGA+TGG | 0.485951 | 1.4:-2226580 | None:intergenic |
| AACAAGAAAATTTACAAGCT+CGG | 0.491496 | 1.4:+2226599 | MS.gene59230:CDS |
| AGAGTAATAACCCTCTTCTT+GGG | 0.492275 | 1.4:-2226932 | None:intergenic |
| GTATGGTACTTACTGGATCC+TGG | 0.497646 | 1.4:-2224785 | None:intergenic |
| TGCAACTGTTATCCGTGTCT+TGG | 0.501459 | 1.4:+2225516 | MS.gene59230:CDS |
| GACGAGAAGTCTGCTTAAGA+AGG | 0.502167 | 1.4:-2226964 | None:intergenic |
| ACAGAAGAAAGCCCATATCA+TGG | 0.505342 | 1.4:+2226283 | MS.gene59230:CDS |
| AGGGGTCTCGATGATTGTCA+CGG | 0.507650 | 1.4:-2225276 | None:intergenic |
| GTCAGAGAAGTCGAGAAGCC+AGG | 0.515408 | 1.4:+2224767 | MS.gene59230:CDS |
| GTATCCGTTCTGACCAGCTC+TGG | 0.518044 | 1.4:-2226558 | None:intergenic |
| ATGATCAAGGGAGGCTGTGT+TGG | 0.526401 | 1.4:+2226908 | MS.gene59230:CDS |
| GAACTCAGTCTGGGCGTCAT+GGG | 0.529915 | 1.4:-2226639 | None:intergenic |
| ATCTCAGATCAGGAAATGAA+GGG | 0.546799 | 1.4:+2226254 | MS.gene59230:intron |
| CACAACACCGACAACAACCA+TGG | 0.549447 | 1.4:-2225300 | None:intergenic |
| GTTCAATGTTCTAAGACCAC+GGG | 0.551523 | 1.4:-2225339 | None:intergenic |
| ACCGACAACAACCATGGGAG+GGG | 0.558376 | 1.4:-2225294 | None:intergenic |
| AGGTTGCATGTATTGGAGCT+TGG | 0.565352 | 1.4:+2226507 | MS.gene59230:CDS |
| TGTTCAATGTTCTAAGACCA+CGG | 0.566021 | 1.4:-2225340 | None:intergenic |
| TCTCGACTTCTCTGACAATG+TGG | 0.567495 | 1.4:-2224760 | None:intergenic |
| GACTCACAGGGGTTTGAGGA+AGG | 0.568790 | 1.4:+2226487 | MS.gene59230:CDS |
| AAGTCTGCTTAAGAAGGGAC+TGG | 0.577488 | 1.4:-2226958 | None:intergenic |
| ACCTCTTCCAAGTTTGGACA+TGG | 0.582976 | 1.4:+2227022 | MS.gene59230:CDS |
| TCTTCCTCGTAAGACTCACA+GGG | 0.584859 | 1.4:+2226475 | MS.gene59230:CDS |
| CACCGACAACAACCATGGGA+GGG | 0.590277 | 1.4:-2225295 | None:intergenic |
| CTCGACTTCTCTGACAATGT+GGG | 0.590618 | 1.4:-2224759 | None:intergenic |
| CCGTGTCTTGGCTCACACCC+AGG | 0.590901 | 1.4:+2225528 | MS.gene59230:CDS |
| TCACCTATCGAACTCAGTCT+GGG | 0.593125 | 1.4:-2226648 | None:intergenic |
| ACGCCCAGACTGAGTTCGAT+AGG | 0.595359 | 1.4:+2226645 | MS.gene59230:CDS |
| GAGAAAGACATTACACCTAT+GGG | 0.596080 | 1.4:+2226845 | MS.gene59230:CDS |
| GGGGTCTCGATGATTGTCAC+GGG | 0.596471 | 1.4:-2225275 | None:intergenic |
| ACAACACCGACAACAACCAT+GGG | 0.596534 | 1.4:-2225299 | None:intergenic |
| ACCATGTCCAAACTTGGAAG+AGG | 0.600841 | 1.4:-2227023 | None:intergenic |
| ATGGGTGGTTTCCCACACTA+CGG | 0.607609 | 1.4:+2226863 | MS.gene59230:CDS |
| ACAGTGAAAGAAACTCTAGC+AGG | 0.609701 | 1.4:-2226533 | None:intergenic |
| CTGTGTTGGTCCCAAGAAGA+GGG | 0.610053 | 1.4:+2226922 | MS.gene59230:CDS |
| ACGAGAAGTCTGCTTAAGAA+GGG | 0.612938 | 1.4:-2226963 | None:intergenic |
| GCTGTGTTGGTCCCAAGAAG+AGG | 0.613945 | 1.4:+2226921 | MS.gene59230:CDS |
| CCTTGACAATACCGTAGTGT+GGG | 0.616873 | 1.4:-2226874 | None:intergenic |
| GTTGCCAGAGCTGGTCAGAA+CGG | 0.617265 | 1.4:+2226554 | MS.gene59230:CDS |
| AATCATCGAGACCCCTCCCA+TGG | 0.618819 | 1.4:+2225283 | MS.gene59230:CDS |
| CAAGCTCGGCAAAGTTGGAG+AGG | 0.619055 | 1.4:+2226613 | MS.gene59230:CDS |
| CCCACACTACGGTATTGTCA+AGG | 0.620478 | 1.4:+2226874 | MS.gene59230:CDS |
| GAAGGTGTTGTTACTCGTTG+GGG | 0.623077 | 1.4:+2226444 | MS.gene59230:intron |
| TAGTGTGGGAAACCACCCAT+AGG | 0.626093 | 1.4:-2226860 | None:intergenic |
| CCTGGGTGTGAGCCAAGACA+CGG | 0.628233 | 1.4:-2225528 | None:intergenic |
| CAAAGTCCACCTCTGAGCGA+TGG | 0.629441 | 1.4:-2226327 | None:intergenic |
| ACACCGACAACAACCATGGG+AGG | 0.629529 | 1.4:-2225296 | None:intergenic |
| GTGGTACCATCGCTCAGAGG+TGG | 0.634409 | 1.4:+2226321 | MS.gene59230:CDS |
| ATCATGGAGATTCAAGTGAA+CGG | 0.637492 | 1.4:+2226299 | MS.gene59230:CDS |
| TCCTTGACAATACCGTAGTG+TGG | 0.648748 | 1.4:-2226875 | None:intergenic |
| AAAGACATTACACCTATGGG+TGG | 0.665025 | 1.4:+2226848 | MS.gene59230:CDS |
| AAACCCCTGTGAGTCTTACG+AGG | 0.675290 | 1.4:-2226479 | None:intergenic |
| ACACTACGGTATTGTCAAGG+AGG | 0.722752 | 1.4:+2226877 | MS.gene59230:CDS |
| ACGGTGGTACCATCGCTCAG+AGG | 0.723894 | 1.4:+2226318 | MS.gene59230:CDS |
| ATGGAGATTCAAGTGAACGG+TGG | 0.740588 | 1.4:+2226302 | MS.gene59230:CDS |
| TTCAATGTTCTAAGACCACG+GGG | 0.753117 | 1.4:-2225338 | None:intergenic |
| CTTCCTCGTAAGACTCACAG+GGG | 0.755519 | 1.4:+2226476 | MS.gene59230:CDS |
| GGTTATGTGAAAACTCCCCG+TGG | 0.767480 | 1.4:+2225323 | MS.gene59230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGATATCATAAATTTTT+GGG | - | chr1.4:2224877-2224896 | None:intergenic | 10.0% |
| !!! | TAAATGATATCATAAATTTT+TGG | - | chr1.4:2224878-2224897 | None:intergenic | 10.0% |
| !!! | TATCATTTATTTGATATTTT+TGG | + | chr1.4:2224889-2224908 | MS.gene59230:intron | 10.0% |
| !!! | TGATAATTTTAAATAACTAA+TGG | + | chr1.4:2226184-2226203 | MS.gene59230:intron | 10.0% |
| !!! | TTGGATTTATTTTTTATATT+TGG | + | chr1.4:2226035-2226054 | MS.gene59230:intron | 10.0% |
| !! | TATGTAACAATTATCATATT+AGG | + | chr1.4:2226128-2226147 | MS.gene59230:intron | 15.0% |
| !!! | AATGATATCATAAATTTTTG+GGG | - | chr1.4:2224876-2224895 | None:intergenic | 15.0% |
| !!! | TTTATTTTTGAAACAACATA+GGG | - | chr1.4:2225050-2225069 | None:intergenic | 15.0% |
| !!! | TTTTATTTTTGAAACAACAT+AGG | - | chr1.4:2225051-2225070 | None:intergenic | 15.0% |
| !! | ATCTAATTTGATGAATGTTT+AGG | + | chr1.4:2224833-2224852 | MS.gene59230:intron | 20.0% |
| !! | TTAAGCATTTCAAAAAATCA+GGG | - | chr1.4:2225205-2225224 | None:intergenic | 20.0% |
| !!! | ATTTTTTATATTTGGCAGTA+TGG | + | chr1.4:2226043-2226062 | MS.gene59230:intron | 20.0% |
| !!! | CTAGATTTTTCTTAAAAGTT+AGG | - | chr1.4:2225797-2225816 | None:intergenic | 20.0% |
| !!! | TTATTTTTGAAACAACATAG+GGG | - | chr1.4:2225049-2225068 | None:intergenic | 20.0% |
| ! | AAAGAAATAGACAGCATATT+TGG | - | chr1.4:2225560-2225579 | None:intergenic | 25.0% |
| ! | AACAAGAAAATTTACAAGCT+CGG | + | chr1.4:2226599-2226618 | MS.gene59230:CDS | 25.0% |
| ! | ATAAAATGCAAAACCAGATT+TGG | - | chr1.4:2225109-2225128 | None:intergenic | 25.0% |
| ! | ATTTGGCTGAAAATGAATAT+TGG | - | chr1.4:2225092-2225111 | None:intergenic | 25.0% |
| ! | GTATTGTTACCTCAAATTAT+AGG | + | chr1.4:2224917-2224936 | MS.gene59230:intron | 25.0% |
| ! | GTTAAGCATTTCAAAAAATC+AGG | - | chr1.4:2225206-2225225 | None:intergenic | 25.0% |
| ! | TAAATGAATCAAAGCTTGAT+GGG | - | chr1.4:2224810-2224829 | None:intergenic | 25.0% |
| ! | TAAGCATTTCAAAAAATCAG+GGG | - | chr1.4:2225204-2225223 | None:intergenic | 25.0% |
| ! | TTCAGTGAAAAACTAAACAA+AGG | - | chr1.4:2225002-2225021 | None:intergenic | 25.0% |
| ! | TTTGGCTGAAAATGAATATT+GGG | - | chr1.4:2225091-2225110 | None:intergenic | 25.0% |
| !! | CTTTTGCTTCTCATTATATT+AGG | + | chr1.4:2225582-2225601 | MS.gene59230:intron | 25.0% |
| !! | TAATGTGTTATTGTTGATGT+AGG | + | chr1.4:2225164-2225183 | MS.gene59230:intron | 25.0% |
| !!! | ACTTTATTTTGGATGATGTT+TGG | + | chr1.4:2225834-2225853 | MS.gene59230:intron | 25.0% |
| !!! | CTTTATTTTGGATGATGTTT+GGG | + | chr1.4:2225835-2225854 | MS.gene59230:intron | 25.0% |
| AAATAAAGTTCCAGAACTAC+TGG | - | chr1.4:2225823-2225842 | None:intergenic | 30.0% | |
| AACTTCTCTCCTATAATTTG+AGG | - | chr1.4:2224929-2224948 | None:intergenic | 30.0% | |
| GATGAAATGATTGACATCAT+TGG | + | chr1.4:2226399-2226418 | MS.gene59230:intron | 30.0% | |
| GTAAATGAATCAAAGCTTGA+TGG | - | chr1.4:2224811-2224830 | None:intergenic | 30.0% | |
| TGTGTTCTCTTACATTTACA+TGG | + | chr1.4:2225137-2225156 | MS.gene59230:intron | 30.0% | |
| TTAGAACATTGAACACTGTA+TGG | + | chr1.4:2225348-2225367 | MS.gene59230:intron | 30.0% | |
| TTGCTTCTCATTATATTAGG+AGG | + | chr1.4:2225585-2225604 | MS.gene59230:intron | 30.0% | |
| ! | TATTCATTTTCAGCCAAATC+TGG | + | chr1.4:2225093-2225112 | MS.gene59230:intron | 30.0% |
| ! | TCAGAGAAGCAAAAGTTTTA+TGG | + | chr1.4:2227061-2227080 | MS.gene59230:CDS | 30.0% |
| !! | ACTTTGAAACATGTAATCTC+AGG | - | chr1.4:2224961-2224980 | None:intergenic | 30.0% |
| !! | AGTCACAATTTTGATACTAG+TGG | + | chr1.4:2225865-2225884 | MS.gene59230:intron | 30.0% |
| !! | GTCACAATTTTGATACTAGT+GGG | + | chr1.4:2225866-2225885 | MS.gene59230:intron | 30.0% |
| !!! | ATACAACTTTTTTGAGAAGC+AGG | + | chr1.4:2226351-2226370 | MS.gene59230:CDS | 30.0% |
| !!! | GTAGTTCTGGAACTTTATTT+TGG | + | chr1.4:2225823-2225842 | MS.gene59230:intron | 30.0% |
| AAAGCAGTATGAAAGTGATG+AGG | + | chr1.4:2225453-2225472 | MS.gene59230:intron | 35.0% | |
| AACATGCTCTGATTGTTCAT+TGG | + | chr1.4:2226673-2226692 | MS.gene59230:intron | 35.0% | |
| AAGCAGTATGAAAGTGATGA+GGG | + | chr1.4:2225454-2225473 | MS.gene59230:intron | 35.0% | |
| ACGAGATTTCTGACTCTTAT+TGG | + | chr1.4:2226016-2226035 | MS.gene59230:intron | 35.0% | |
| ACTGCAACAGATTTCAGTTT+AGG | + | chr1.4:2226751-2226770 | MS.gene59230:intron | 35.0% | |
| AGAGTAATAACCCTCTTCTT+GGG | - | chr1.4:2226935-2226954 | None:intergenic | 35.0% | |
| ATCATGGAGATTCAAGTGAA+CGG | + | chr1.4:2226299-2226318 | MS.gene59230:CDS | 35.0% | |
| ATCTCAGATCAGGAAATGAA+GGG | + | chr1.4:2226254-2226273 | MS.gene59230:intron | 35.0% | |
| CAAAAAAGGCTGGATAAGTT+TGG | - | chr1.4:2226814-2226833 | None:intergenic | 35.0% | |
| CACTTGAATCTCCATGATAT+GGG | - | chr1.4:2226297-2226316 | None:intergenic | 35.0% | |
| CTCAGTCCTGTTAACAAAAA+AGG | - | chr1.4:2226828-2226847 | None:intergenic | 35.0% | |
| GAGAAAGACATTACACCTAT+GGG | + | chr1.4:2226845-2226864 | MS.gene59230:CDS | 35.0% | |
| GTTTACCTTTATCTCAGATC+AGG | + | chr1.4:2226244-2226263 | MS.gene59230:intron | 35.0% | |
| TACTTCTTCATTTCTCAAGC+TGG | - | chr1.4:2225496-2225515 | None:intergenic | 35.0% | |
| TATCTCAGAGCTTCACAAAA+AGG | + | chr1.4:2225241-2225260 | MS.gene59230:intron | 35.0% | |
| TATCTCAGATCAGGAAATGA+AGG | + | chr1.4:2226253-2226272 | MS.gene59230:intron | 35.0% | |
| TCACTTGAATCTCCATGATA+TGG | - | chr1.4:2226298-2226317 | None:intergenic | 35.0% | |
| TCATCTCAAAAAGCAAAGAG+AGG | - | chr1.4:2225679-2225698 | None:intergenic | 35.0% | |
| TGAGAAAGACATTACACCTA+TGG | + | chr1.4:2226844-2226863 | MS.gene59230:CDS | 35.0% | |
| TGTCAATCATTTCATCCTTC+TGG | - | chr1.4:2226395-2226414 | None:intergenic | 35.0% | |
| ! | CATTTCCTGATCTGAGATAA+AGG | - | chr1.4:2226252-2226271 | None:intergenic | 35.0% |
| ! | GAGGATTTTCTGATGATCAA+GGG | + | chr1.4:2226896-2226915 | MS.gene59230:CDS | 35.0% |
| !! | TGTGAAGCTCTGAGATAATA+GGG | - | chr1.4:2225238-2225257 | None:intergenic | 35.0% |
| !! | TGTTCAATGTTCTAAGACCA+CGG | - | chr1.4:2225343-2225362 | None:intergenic | 35.0% |
| !! | TTGTGAAGCTCTGAGATAAT+AGG | - | chr1.4:2225239-2225258 | None:intergenic | 35.0% |
| !!! | ATCCAGCCTTTTTTGTTAAC+AGG | + | chr1.4:2226819-2226838 | MS.gene59230:intron | 35.0% |
| AAAGACATTACACCTATGGG+TGG | + | chr1.4:2226848-2226867 | MS.gene59230:CDS | 40.0% | |
| AATCTAGTCACCAGTAGTTC+TGG | + | chr1.4:2225810-2225829 | MS.gene59230:intron | 40.0% | |
| ACAGAAGAAAGCCCATATCA+TGG | + | chr1.4:2226283-2226302 | MS.gene59230:CDS | 40.0% | |
| ACAGTGAAAGAAACTCTAGC+AGG | - | chr1.4:2226536-2226555 | None:intergenic | 40.0% | |
| ACGAGAAGTCTGCTTAAGAA+GGG | - | chr1.4:2226966-2226985 | None:intergenic | 40.0% | |
| AGCAGTATGAAAGTGATGAG+GGG | + | chr1.4:2225455-2225474 | MS.gene59230:intron | 40.0% | |
| AGCATATTTGGCAGTTACCT+GGG | - | chr1.4:2225548-2225567 | None:intergenic | 40.0% | |
| ATCGATACCTCTTCCAAGTT+TGG | + | chr1.4:2227016-2227035 | MS.gene59230:CDS | 40.0% | |
| ATTTACAAGCTCGGCAAAGT+TGG | + | chr1.4:2226608-2226627 | MS.gene59230:CDS | 40.0% | |
| CAGAGTAATAACCCTCTTCT+TGG | - | chr1.4:2226936-2226955 | None:intergenic | 40.0% | |
| GTCCTGTTAACAAAAAAGGC+TGG | - | chr1.4:2226824-2226843 | None:intergenic | 40.0% | |
| TAAGAGTCAGAAATCTCGTG+TGG | - | chr1.4:2226015-2226034 | None:intergenic | 40.0% | |
| TCAATGACTCTCGACTCATA+TGG | + | chr1.4:2226066-2226085 | MS.gene59230:intron | 40.0% | |
| TGAGTGAGGAAATTAAGCGT+AGG | + | chr1.4:2225380-2225399 | MS.gene59230:intron | 40.0% | |
| TTGAGGAAGGTTGCATGTAT+TGG | + | chr1.4:2226500-2226519 | MS.gene59230:CDS | 40.0% | |
| TTTGCTTCTCTGATGTTGTC+TGG | - | chr1.4:2227054-2227073 | None:intergenic | 40.0% | |
| ! | GAATCAAAGCTTGATGGGTA+TGG | - | chr1.4:2224805-2224824 | None:intergenic | 40.0% |
| ! | GATTTTCTGATGATCAAGGG+AGG | + | chr1.4:2226899-2226918 | MS.gene59230:CDS | 40.0% |
| ! | GGAGGATTTTCTGATGATCA+AGG | + | chr1.4:2226895-2226914 | MS.gene59230:CDS | 40.0% |
| ! | TTGATGGGTATGGTACTTAC+TGG | - | chr1.4:2224795-2224814 | None:intergenic | 40.0% |
| !! | ATGAAGGTGTTGTTACTCGT+TGG | + | chr1.4:2226442-2226461 | MS.gene59230:intron | 40.0% |
| !! | GTTCAATGTTCTAAGACCAC+GGG | - | chr1.4:2225342-2225361 | None:intergenic | 40.0% |
| !! | TGAAGGTGTTGTTACTCGTT+GGG | + | chr1.4:2226443-2226462 | MS.gene59230:intron | 40.0% |
| !! | TTCAATGTTCTAAGACCACG+GGG | - | chr1.4:2225341-2225360 | None:intergenic | 40.0% |
| AAGTCTGCTTAAGAAGGGAC+TGG | - | chr1.4:2226961-2226980 | None:intergenic | 45.0% | |
| ACAACACCGACAACAACCAT+GGG | - | chr1.4:2225302-2225321 | None:intergenic | 45.0% | |
| ACACTACGGTATTGTCAAGG+AGG | + | chr1.4:2226877-2226896 | MS.gene59230:CDS | 45.0% | |
| ACCAAGGGTAAGGGTTATGA+AGG | + | chr1.4:2226426-2226445 | MS.gene59230:intron | 45.0% | |
| ACCATGTCCAAACTTGGAAG+AGG | - | chr1.4:2227026-2227045 | None:intergenic | 45.0% | |
| ACCTCTTCCAAGTTTGGACA+TGG | + | chr1.4:2227022-2227041 | MS.gene59230:CDS | 45.0% | |
| ACCTTCATAACCCTTACCCT+TGG | - | chr1.4:2226430-2226449 | None:intergenic | 45.0% | |
| ACTAGATCAGAAATCTCGCG+TGG | - | chr1.4:2225755-2225774 | None:intergenic | 45.0% | |
| AGCGTAGGTTCTACAAGAAC+TGG | + | chr1.4:2225395-2225414 | MS.gene59230:intron | 45.0% | |
| AGGTTGCATGTATTGGAGCT+TGG | + | chr1.4:2226507-2226526 | MS.gene59230:CDS | 45.0% | |
| ATGGAGATTCAAGTGAACGG+TGG | + | chr1.4:2226302-2226321 | MS.gene59230:CDS | 45.0% | |
| ATTGGAGTGACCAAGGGTAA+GGG | + | chr1.4:2226417-2226436 | MS.gene59230:intron | 45.0% | |
| CAGCATATTTGGCAGTTACC+TGG | - | chr1.4:2225549-2225568 | None:intergenic | 45.0% | |
| CCTTGACAATACCGTAGTGT+GGG | - | chr1.4:2226877-2226896 | None:intergenic | 45.0% | |
| CTATGATGCTGTGTTCCAGA+AGG | + | chr1.4:2226377-2226396 | MS.gene59230:intron | 45.0% | |
| CTCGACTTCTCTGACAATGT+GGG | - | chr1.4:2224762-2224781 | None:intergenic | 45.0% | |
| CTTCATTTCTCAAGCTGGTC+TGG | - | chr1.4:2225491-2225510 | None:intergenic | 45.0% | |
| CTTGCTGAAAGCCTTCTTCT+TGG | - | chr1.4:2225428-2225447 | None:intergenic | 45.0% | |
| GAAACGACCATGTCCAAACT+TGG | - | chr1.4:2227032-2227051 | None:intergenic | 45.0% | |
| GACATCATTGGAGTGACCAA+GGG | + | chr1.4:2226411-2226430 | MS.gene59230:intron | 45.0% | |
| GACGAGAAGTCTGCTTAAGA+AGG | - | chr1.4:2226967-2226986 | None:intergenic | 45.0% | |
| GTATGGTACTTACTGGATCC+TGG | - | chr1.4:2224788-2224807 | None:intergenic | 45.0% | |
| TCACCTATCGAACTCAGTCT+GGG | - | chr1.4:2226651-2226670 | None:intergenic | 45.0% | |
| TCCTTGACAATACCGTAGTG+TGG | - | chr1.4:2226878-2226897 | None:intergenic | 45.0% | |
| TCTCGACTTCTCTGACAATG+TGG | - | chr1.4:2224763-2224782 | None:intergenic | 45.0% | |
| TCTTCCTCGTAAGACTCACA+GGG | + | chr1.4:2226475-2226494 | MS.gene59230:CDS | 45.0% | |
| TGACATCATTGGAGTGACCA+AGG | + | chr1.4:2226410-2226429 | MS.gene59230:intron | 45.0% | |
| TGCAACTGTTATCCGTGTCT+TGG | + | chr1.4:2225516-2225535 | MS.gene59230:CDS | 45.0% | |
| TGTTCAGCTCAGTTCTGTGA+TGG | - | chr1.4:2226583-2226602 | None:intergenic | 45.0% | |
| ! | CGCTAATTAGGTGCTATGAG+CGG | + | chr1.4:2225984-2226003 | MS.gene59230:intron | 45.0% |
| ! | TATGGACTCAGCATTGAGTG+AGG | + | chr1.4:2225366-2225385 | MS.gene59230:intron | 45.0% |
| !! | ATGGTTGTTGTCGGTGTTGT+GGG | + | chr1.4:2225302-2225321 | MS.gene59230:CDS | 45.0% |
| !! | CTTCTGGAACACAGCATCAT+AGG | - | chr1.4:2226379-2226398 | None:intergenic | 45.0% |
| !! | GAAGGTGTTGTTACTCGTTG+GGG | + | chr1.4:2226444-2226463 | MS.gene59230:intron | 45.0% |
| AAACCCCTGTGAGTCTTACG+AGG | - | chr1.4:2226482-2226501 | None:intergenic | 50.0% | |
| AGGGGTCTCGATGATTGTCA+CGG | - | chr1.4:2225279-2225298 | None:intergenic | 50.0% | |
| ATCTGTGCAAACGCAGCACT+AGG | + | chr1.4:2225711-2225730 | MS.gene59230:intron | 50.0% | |
| ATGATCAAGGGAGGCTGTGT+TGG | + | chr1.4:2226908-2226927 | MS.gene59230:CDS | 50.0% | |
| ATGGGTGGTTTCCCACACTA+CGG | + | chr1.4:2226863-2226882 | MS.gene59230:CDS | 50.0% | |
| CACAACACCGACAACAACCA+TGG | - | chr1.4:2225303-2225322 | None:intergenic | 50.0% | |
| CATTGGAGTGACCAAGGGTA+AGG | + | chr1.4:2226416-2226435 | MS.gene59230:intron | 50.0% | |
| CCCACACTACGGTATTGTCA+AGG | + | chr1.4:2226874-2226893 | MS.gene59230:CDS | 50.0% | |
| CTCACCTATCGAACTCAGTC+TGG | - | chr1.4:2226652-2226671 | None:intergenic | 50.0% | |
| CTGGTGCAAGTCCAAGAAGA+AGG | + | chr1.4:2225414-2225433 | MS.gene59230:intron | 50.0% | |
| CTTCCTCGTAAGACTCACAG+GGG | + | chr1.4:2226476-2226495 | MS.gene59230:CDS | 50.0% | |
| GACTTCTCGTCTTGCTCTTG+AGG | + | chr1.4:2226976-2226995 | MS.gene59230:CDS | 50.0% | |
| GGTTATGTGAAAACTCCCCG+TGG | + | chr1.4:2225323-2225342 | MS.gene59230:CDS | 50.0% | |
| GTAAGACTCACAGGGGTTTG+AGG | + | chr1.4:2226483-2226502 | MS.gene59230:CDS | 50.0% | |
| GTCTTCCTCGTAAGACTCAC+AGG | + | chr1.4:2226474-2226493 | MS.gene59230:CDS | 50.0% | |
| GTGCAAACGCAGCGCTAATT+AGG | + | chr1.4:2225972-2225991 | MS.gene59230:intron | 50.0% | |
| TAGTGTGGGAAACCACCCAT+AGG | - | chr1.4:2226863-2226882 | None:intergenic | 50.0% | |
| TCTTTCACTGTTGCCAGAGC+TGG | + | chr1.4:2226545-2226564 | MS.gene59230:CDS | 50.0% | |
| ! | CATTTCTCAAGCTGGTCTGG+AGG | - | chr1.4:2225488-2225507 | None:intergenic | 50.0% |
| ! | CTGTGTTGGTCCCAAGAAGA+GGG | + | chr1.4:2226922-2226941 | MS.gene59230:CDS | 50.0% |
| !! | CATGGTTGTTGTCGGTGTTG+TGG | + | chr1.4:2225301-2225320 | MS.gene59230:CDS | 50.0% |
| AATCATCGAGACCCCTCCCA+TGG | + | chr1.4:2225283-2225302 | MS.gene59230:CDS | 55.0% | |
| ACACCGACAACAACCATGGG+AGG | - | chr1.4:2225299-2225318 | None:intergenic | 55.0% | |
| ACCCCTCCCATGGTTGTTGT+CGG | + | chr1.4:2225293-2225312 | MS.gene59230:CDS | 55.0% | |
| ACCGACAACAACCATGGGAG+GGG | - | chr1.4:2225297-2225316 | None:intergenic | 55.0% | |
| ACGCCCAGACTGAGTTCGAT+AGG | + | chr1.4:2226645-2226664 | MS.gene59230:CDS | 55.0% | |
| CAAAGTCCACCTCTGAGCGA+TGG | - | chr1.4:2226330-2226349 | None:intergenic | 55.0% | |
| CAAGCTCGGCAAAGTTGGAG+AGG | + | chr1.4:2226613-2226632 | MS.gene59230:CDS | 55.0% | |
| CACCGACAACAACCATGGGA+GGG | - | chr1.4:2225298-2225317 | None:intergenic | 55.0% | |
| GAACTCAGTCTGGGCGTCAT+GGG | - | chr1.4:2226642-2226661 | None:intergenic | 55.0% | |
| GACTCACAGGGGTTTGAGGA+AGG | + | chr1.4:2226487-2226506 | MS.gene59230:CDS | 55.0% | |
| GGGGTCTCGATGATTGTCAC+GGG | - | chr1.4:2225278-2225297 | None:intergenic | 55.0% | |
| GTATCCGTTCTGACCAGCTC+TGG | - | chr1.4:2226561-2226580 | None:intergenic | 55.0% | |
| GTCAGAGAAGTCGAGAAGCC+AGG | + | chr1.4:2224767-2224786 | MS.gene59230:CDS | 55.0% | |
| GTTGCCAGAGCTGGTCAGAA+CGG | + | chr1.4:2226554-2226573 | MS.gene59230:CDS | 55.0% | |
| ! | GCAGCACTAGGTGCTATGAG+CGG | + | chr1.4:2225723-2225742 | MS.gene59230:intron | 55.0% |
| ! | GCTGTGTTGGTCCCAAGAAG+AGG | + | chr1.4:2226921-2226940 | MS.gene59230:CDS | 55.0% |
| ACGGTGGTACCATCGCTCAG+AGG | + | chr1.4:2226318-2226337 | MS.gene59230:CDS | 60.0% | |
| CCTGGGTGTGAGCCAAGACA+CGG | - | chr1.4:2225531-2225550 | None:intergenic | 60.0% | |
| CGAACTCAGTCTGGGCGTCA+TGG | - | chr1.4:2226643-2226662 | None:intergenic | 60.0% | |
| GTGGTACCATCGCTCAGAGG+TGG | + | chr1.4:2226321-2226340 | MS.gene59230:CDS | 60.0% | |
| CCGTGTCTTGGCTCACACCC+AGG | + | chr1.4:2225528-2225547 | MS.gene59230:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 2224755 | 2227099 | 2224755 | ID=MS.gene59230 |
| chr1.4 | mRNA | 2224755 | 2227099 | 2224755 | ID=MS.gene59230.t1;Parent=MS.gene59230 |
| chr1.4 | exon | 2224755 | 2224794 | 2224755 | ID=MS.gene59230.t1.exon1;Parent=MS.gene59230.t1 |
| chr1.4 | CDS | 2224755 | 2224794 | 2224755 | ID=cds.MS.gene59230.t1;Parent=MS.gene59230.t1 |
| chr1.4 | exon | 2225249 | 2225364 | 2225249 | ID=MS.gene59230.t1.exon2;Parent=MS.gene59230.t1 |
| chr1.4 | CDS | 2225249 | 2225364 | 2225249 | ID=cds.MS.gene59230.t1;Parent=MS.gene59230.t1 |
| chr1.4 | exon | 2225492 | 2225549 | 2225492 | ID=MS.gene59230.t1.exon3;Parent=MS.gene59230.t1 |
| chr1.4 | CDS | 2225492 | 2225549 | 2225492 | ID=cds.MS.gene59230.t1;Parent=MS.gene59230.t1 |
| chr1.4 | exon | 2226261 | 2226372 | 2226261 | ID=MS.gene59230.t1.exon4;Parent=MS.gene59230.t1 |
| chr1.4 | CDS | 2226261 | 2226372 | 2226261 | ID=cds.MS.gene59230.t1;Parent=MS.gene59230.t1 |
| chr1.4 | exon | 2226448 | 2226666 | 2226448 | ID=MS.gene59230.t1.exon5;Parent=MS.gene59230.t1 |
| chr1.4 | CDS | 2226448 | 2226666 | 2226448 | ID=cds.MS.gene59230.t1;Parent=MS.gene59230.t1 |
| chr1.4 | exon | 2226841 | 2227099 | 2226841 | ID=MS.gene59230.t1.exon6;Parent=MS.gene59230.t1 |
| chr1.4 | CDS | 2226841 | 2227099 | 2226841 | ID=cds.MS.gene59230.t1;Parent=MS.gene59230.t1 |
| Gene Sequence |
| Protein sequence |
